0s autopkgtest [22:58:00]: starting date and time: 2026-02-09 22:58:00+0000 0s autopkgtest [22:58:00]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [22:58:00]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.ru1ea7tn/out --timeout-copy=6000 --needs-internet=try --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:lattice --apt-upgrade r-cran-fit.models --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=lattice/0.22-9-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-arm64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@sto01-arm64-17.secgroup --name adt-resolute-arm64-r-cran-fit.models-20260209-225800-juju-7f2275-prod-proposed-migration-environment-2-bdbe3da7-b648-4ec3-9c79-9cb927c548a0 --image adt/ubuntu-resolute-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-autopkgtest-workers-arm64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 3s Creating nova instance adt-resolute-arm64-r-cran-fit.models-20260209-225800-juju-7f2275-prod-proposed-migration-environment-2-bdbe3da7-b648-4ec3-9c79-9cb927c548a0 from image adt/ubuntu-resolute-arm64-server-20260209.img (UUID 793037ca-75af-461b-82de-f8081300b2e3)... 120s autopkgtest [23:00:00]: testbed dpkg architecture: arm64 120s autopkgtest [23:00:00]: testbed apt version: 3.1.15 121s autopkgtest [23:00:01]: @@@@@@@@@@@@@@@@@@@@ test bed setup 121s autopkgtest [23:00:01]: testbed release detected to be: None 122s autopkgtest [23:00:02]: updating testbed package index (apt update) 122s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 122s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 122s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 122s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 122s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [176 kB] 122s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1645 kB] 125s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [29.4 kB] 125s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 Packages [246 kB] 125s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 c-n-f Metadata [6216 B] 125s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 c-n-f Metadata [304 B] 125s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 Packages [1580 kB] 128s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 c-n-f Metadata [32.0 kB] 128s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 Packages [21.7 kB] 128s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 c-n-f Metadata [688 B] 129s Fetched 3862 kB in 6s (645 kB/s) 130s Reading package lists... 131s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 131s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 131s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 131s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 132s Reading package lists... 132s Reading package lists... 132s Building dependency tree... 132s Reading state information... 132s Calculating upgrade... 133s The following packages will be upgraded: 133s cryptsetup-bin dracut-install iproute2 iptables libcryptsetup12 libip4tc2 133s libip6tc2 libxtables12 wget 133s 9 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 133s Need to get 2534 kB of archives. 133s After this operation, 18.4 kB of additional disk space will be used. 133s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 iptables arm64 1.8.11-2ubuntu3 [386 kB] 133s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 libip4tc2 arm64 1.8.11-2ubuntu3 [24.3 kB] 133s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 libip6tc2 arm64 1.8.11-2ubuntu3 [24.7 kB] 133s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 libxtables12 arm64 1.8.11-2ubuntu3 [36.7 kB] 133s Get:5 http://ftpmaster.internal/ubuntu resolute/main arm64 iproute2 arm64 6.18.0-1ubuntu1 [1171 kB] 135s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 libcryptsetup12 arm64 2:2.8.0-1ubuntu3 [274 kB] 135s Get:7 http://ftpmaster.internal/ubuntu resolute/main arm64 wget arm64 1.25.0-2ubuntu4 [344 kB] 135s Get:8 http://ftpmaster.internal/ubuntu resolute/main arm64 cryptsetup-bin arm64 2:2.8.0-1ubuntu3 [227 kB] 135s Get:9 http://ftpmaster.internal/ubuntu resolute/main arm64 dracut-install arm64 109-11ubuntu1 [45.3 kB] 135s dpkg-preconfigure: unable to re-open stdin: No such file or directory 135s Fetched 2534 kB in 2s (1225 kB/s) 135s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 136597 files and directories currently installed.) 135s Preparing to unpack .../0-iptables_1.8.11-2ubuntu3_arm64.deb ... 135s Unpacking iptables (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 135s Preparing to unpack .../1-libip4tc2_1.8.11-2ubuntu3_arm64.deb ... 135s Unpacking libip4tc2:arm64 (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 135s Preparing to unpack .../2-libip6tc2_1.8.11-2ubuntu3_arm64.deb ... 135s Unpacking libip6tc2:arm64 (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 136s Preparing to unpack .../3-libxtables12_1.8.11-2ubuntu3_arm64.deb ... 136s Unpacking libxtables12:arm64 (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 136s Preparing to unpack .../4-iproute2_6.18.0-1ubuntu1_arm64.deb ... 136s Unpacking iproute2 (6.18.0-1ubuntu1) over (6.16.0-1ubuntu3) ... 136s Preparing to unpack .../5-libcryptsetup12_2%3a2.8.0-1ubuntu3_arm64.deb ... 136s Unpacking libcryptsetup12:arm64 (2:2.8.0-1ubuntu3) over (2:2.8.0-1ubuntu2) ... 136s Preparing to unpack .../6-wget_1.25.0-2ubuntu4_arm64.deb ... 136s Unpacking wget (1.25.0-2ubuntu4) over (1.25.0-2ubuntu3) ... 136s Preparing to unpack .../7-cryptsetup-bin_2%3a2.8.0-1ubuntu3_arm64.deb ... 136s Unpacking cryptsetup-bin (2:2.8.0-1ubuntu3) over (2:2.8.0-1ubuntu2) ... 136s Preparing to unpack .../8-dracut-install_109-11ubuntu1_arm64.deb ... 136s Unpacking dracut-install (109-11ubuntu1) over (109-9ubuntu1) ... 136s Setting up libip4tc2:arm64 (1.8.11-2ubuntu3) ... 136s Setting up wget (1.25.0-2ubuntu4) ... 136s Setting up libip6tc2:arm64 (1.8.11-2ubuntu3) ... 136s Setting up libxtables12:arm64 (1.8.11-2ubuntu3) ... 136s Setting up dracut-install (109-11ubuntu1) ... 136s Setting up libcryptsetup12:arm64 (2:2.8.0-1ubuntu3) ... 136s Setting up cryptsetup-bin (2:2.8.0-1ubuntu3) ... 136s Setting up iptables (1.8.11-2ubuntu3) ... 136s Setting up iproute2 (6.18.0-1ubuntu1) ... 137s Processing triggers for man-db (2.13.1-1build1) ... 138s Processing triggers for install-info (7.2-5) ... 138s Processing triggers for libc-bin (2.42-2ubuntu4) ... 138s autopkgtest [23:00:18]: upgrading testbed (apt dist-upgrade and autopurge) 138s Reading package lists... 138s Building dependency tree... 138s Reading state information... 138s Calculating upgrade... 139s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 139s Reading package lists... 139s Building dependency tree... 139s Reading state information... 139s Solving dependencies... 140s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 142s autopkgtest [23:00:22]: testbed running kernel: Linux 6.19.0-3-generic #3-Ubuntu SMP PREEMPT_DYNAMIC Fri Jan 23 19:46:27 UTC 2026 142s autopkgtest [23:00:22]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-fit.models 144s Get:1 http://ftpmaster.internal/ubuntu resolute/universe r-cran-fit.models 0.64-1build1 (dsc) [2143 B] 144s Get:2 http://ftpmaster.internal/ubuntu resolute/universe r-cran-fit.models 0.64-1build1 (tar) [32.5 kB] 144s Get:3 http://ftpmaster.internal/ubuntu resolute/universe r-cran-fit.models 0.64-1build1 (diff) [2440 B] 144s gpgv: Signature made Fri Nov 28 21:47:43 2025 UTC 144s gpgv: using RSA key 92FE4F8B40CADC4ECCD60C1F5961FDBE9C619809 144s gpgv: Can't check signature: No public key 144s dpkg-source: warning: cannot verify inline signature for ./r-cran-fit.models_0.64-1build1.dsc: no acceptable signature found 144s autopkgtest [23:00:24]: testing package r-cran-fit.models version 0.64-1build1 144s autopkgtest [23:00:24]: build not needed 146s autopkgtest [23:00:26]: test run-unit-test: preparing testbed 146s Reading package lists... 146s Building dependency tree... 146s Reading state information... 146s Solving dependencies... 147s The following NEW packages will be installed: 147s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono libblas3 147s libcairo2 libdatrie1 libdeflate0 libfontconfig1 libgfortran5 libgomp1 147s libgraphite2-3 libharfbuzz0b libice6 libjbig0 libjpeg-turbo8 libjpeg8 147s liblapack3 liblerc4 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 147s libpaper-utils libpaper2 libpixman-1-0 libsharpyuv0 libsm6 libtcl8.6 147s libthai-data libthai0 libtiff6 libtk8.6 libwebp7 libxcb-render0 libxcb-shm0 147s libxft2 libxrender1 libxss1 libxt6t64 r-base-core r-cran-fit.models 147s r-cran-lattice r-cran-mass unzip x11-common xdg-utils zip 147s 0 upgraded, 47 newly installed, 0 to remove and 0 not upgraded. 147s Need to get 41.3 MB of archives. 147s After this operation, 83.2 MB of additional disk space will be used. 147s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-mono all 2.37-8build1 [502 kB] 147s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-core all 2.37-8build1 [834 kB] 148s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 fontconfig-config arm64 2.17.1-3ubuntu1 [38.5 kB] 148s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 libfontconfig1 arm64 2.17.1-3ubuntu1 [144 kB] 148s Get:5 http://ftpmaster.internal/ubuntu resolute/main arm64 fontconfig arm64 2.17.1-3ubuntu1 [181 kB] 148s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 libblas3 arm64 3.12.1-7ubuntu1 [181 kB] 148s Get:7 http://ftpmaster.internal/ubuntu resolute/main arm64 libpixman-1-0 arm64 0.46.4-1 [204 kB] 148s Get:8 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-render0 arm64 1.17.0-2ubuntu1 [16.4 kB] 148s Get:9 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-shm0 arm64 1.17.0-2ubuntu1 [5938 B] 148s Get:10 http://ftpmaster.internal/ubuntu resolute/main arm64 libxrender1 arm64 1:0.9.12-1 [19.5 kB] 148s Get:11 http://ftpmaster.internal/ubuntu resolute/main arm64 libcairo2 arm64 1.18.4-3 [556 kB] 149s Get:12 http://ftpmaster.internal/ubuntu resolute/main arm64 libdatrie1 arm64 0.2.14-1 [19.6 kB] 149s Get:13 http://ftpmaster.internal/ubuntu resolute/main arm64 libdeflate0 arm64 1.23-2build1 [46.8 kB] 149s Get:14 http://ftpmaster.internal/ubuntu resolute/main arm64 libgfortran5 arm64 15.2.0-12ubuntu1 [451 kB] 150s Get:15 http://ftpmaster.internal/ubuntu resolute/main arm64 libgomp1 arm64 15.2.0-12ubuntu1 [147 kB] 150s Get:16 http://ftpmaster.internal/ubuntu resolute/main arm64 libgraphite2-3 arm64 1.3.14-11ubuntu1 [72.1 kB] 150s Get:17 http://ftpmaster.internal/ubuntu resolute/main arm64 libharfbuzz0b arm64 12.3.2-1 [510 kB] 150s Get:18 http://ftpmaster.internal/ubuntu resolute/main arm64 x11-common all 1:7.7+24ubuntu1 [22.4 kB] 150s Get:19 http://ftpmaster.internal/ubuntu resolute/main arm64 libice6 arm64 2:1.1.1-1build1 [43.0 kB] 150s Get:20 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg-turbo8 arm64 2.1.5-4ubuntu3 [161 kB] 150s Get:21 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 150s Get:22 http://ftpmaster.internal/ubuntu resolute/main arm64 liblapack3 arm64 3.12.1-7ubuntu1 [2299 kB] 155s Get:23 http://ftpmaster.internal/ubuntu resolute/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu2 [174 kB] 155s Get:24 http://ftpmaster.internal/ubuntu resolute/main arm64 libthai-data all 0.1.30-1 [155 kB] 155s Get:25 http://ftpmaster.internal/ubuntu resolute/main arm64 libthai0 arm64 0.1.30-1 [18.3 kB] 155s Get:26 http://ftpmaster.internal/ubuntu resolute/main arm64 libpango-1.0-0 arm64 1.57.0-1 [238 kB] 155s Get:27 http://ftpmaster.internal/ubuntu resolute/main arm64 libpangoft2-1.0-0 arm64 1.57.0-1 [51.5 kB] 155s Get:28 http://ftpmaster.internal/ubuntu resolute/main arm64 libpangocairo-1.0-0 arm64 1.57.0-1 [27.9 kB] 155s Get:29 http://ftpmaster.internal/ubuntu resolute/main arm64 libpaper2 arm64 2.2.5-0.3build1 [17.3 kB] 155s Get:30 http://ftpmaster.internal/ubuntu resolute/main arm64 libpaper-utils arm64 2.2.5-0.3build1 [15.4 kB] 155s Get:31 http://ftpmaster.internal/ubuntu resolute/main arm64 libsharpyuv0 arm64 1.5.0-0.1build1 [16.7 kB] 155s Get:32 http://ftpmaster.internal/ubuntu resolute/main arm64 libsm6 arm64 2:1.2.6-1build1 [16.8 kB] 155s Get:33 http://ftpmaster.internal/ubuntu resolute/main arm64 libtcl8.6 arm64 8.6.17+dfsg-1build1 [983 kB] 158s Get:34 http://ftpmaster.internal/ubuntu resolute/main arm64 libjbig0 arm64 2.1-6.1ubuntu3 [29.2 kB] 158s Get:35 http://ftpmaster.internal/ubuntu resolute/main arm64 libwebp7 arm64 1.5.0-0.1build1 [205 kB] 158s Get:36 http://ftpmaster.internal/ubuntu resolute/main arm64 libtiff6 arm64 4.7.0-3ubuntu3 [196 kB] 158s Get:37 http://ftpmaster.internal/ubuntu resolute/main arm64 libxft2 arm64 2.3.6-1build2 [43.2 kB] 158s Get:38 http://ftpmaster.internal/ubuntu resolute/main arm64 libxss1 arm64 1:1.2.3-1build4 [7102 B] 158s Get:39 http://ftpmaster.internal/ubuntu resolute/main arm64 libtk8.6 arm64 8.6.17-1 [811 kB] 160s Get:40 http://ftpmaster.internal/ubuntu resolute/main arm64 libxt6t64 arm64 1:1.2.1-1.3 [168 kB] 160s Get:41 http://ftpmaster.internal/ubuntu resolute/main arm64 zip arm64 3.0-15ubuntu3 [170 kB] 160s Get:42 http://ftpmaster.internal/ubuntu resolute/main arm64 unzip arm64 6.0-29ubuntu1 [176 kB] 160s Get:43 http://ftpmaster.internal/ubuntu resolute/main arm64 xdg-utils all 1.2.1-2ubuntu2 [66.1 kB] 160s Get:44 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-base-core arm64 4.5.2-1ubuntu2 [28.6 MB] 218s Get:45 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 r-cran-lattice arm64 0.22-9-1 [1399 kB] 220s Get:46 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-fit.models all 0.64-1build1 [145 kB] 220s Get:47 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-mass arm64 7.3-65-1 [1109 kB] 223s Preconfiguring packages ... 223s Fetched 41.3 MB in 1min 16s (547 kB/s) 223s Selecting previously unselected package fonts-dejavu-mono. 223s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 136600 files and directories currently installed.) 223s Preparing to unpack .../00-fonts-dejavu-mono_2.37-8build1_all.deb ... 223s Unpacking fonts-dejavu-mono (2.37-8build1) ... 223s Selecting previously unselected package fonts-dejavu-core. 223s Preparing to unpack .../01-fonts-dejavu-core_2.37-8build1_all.deb ... 223s Unpacking fonts-dejavu-core (2.37-8build1) ... 223s Selecting previously unselected package fontconfig-config. 223s Preparing to unpack .../02-fontconfig-config_2.17.1-3ubuntu1_arm64.deb ... 223s Unpacking fontconfig-config (2.17.1-3ubuntu1) ... 223s Selecting previously unselected package libfontconfig1:arm64. 223s Preparing to unpack .../03-libfontconfig1_2.17.1-3ubuntu1_arm64.deb ... 223s Unpacking libfontconfig1:arm64 (2.17.1-3ubuntu1) ... 223s Selecting previously unselected package fontconfig. 223s Preparing to unpack .../04-fontconfig_2.17.1-3ubuntu1_arm64.deb ... 223s Unpacking fontconfig (2.17.1-3ubuntu1) ... 223s Selecting previously unselected package libblas3:arm64. 223s Preparing to unpack .../05-libblas3_3.12.1-7ubuntu1_arm64.deb ... 223s Unpacking libblas3:arm64 (3.12.1-7ubuntu1) ... 223s Selecting previously unselected package libpixman-1-0:arm64. 223s Preparing to unpack .../06-libpixman-1-0_0.46.4-1_arm64.deb ... 223s Unpacking libpixman-1-0:arm64 (0.46.4-1) ... 223s Selecting previously unselected package libxcb-render0:arm64. 223s Preparing to unpack .../07-libxcb-render0_1.17.0-2ubuntu1_arm64.deb ... 223s Unpacking libxcb-render0:arm64 (1.17.0-2ubuntu1) ... 223s Selecting previously unselected package libxcb-shm0:arm64. 223s Preparing to unpack .../08-libxcb-shm0_1.17.0-2ubuntu1_arm64.deb ... 223s Unpacking libxcb-shm0:arm64 (1.17.0-2ubuntu1) ... 223s Selecting previously unselected package libxrender1:arm64. 223s Preparing to unpack .../09-libxrender1_1%3a0.9.12-1_arm64.deb ... 223s Unpacking libxrender1:arm64 (1:0.9.12-1) ... 223s Selecting previously unselected package libcairo2:arm64. 223s Preparing to unpack .../10-libcairo2_1.18.4-3_arm64.deb ... 223s Unpacking libcairo2:arm64 (1.18.4-3) ... 223s Selecting previously unselected package libdatrie1:arm64. 223s Preparing to unpack .../11-libdatrie1_0.2.14-1_arm64.deb ... 223s Unpacking libdatrie1:arm64 (0.2.14-1) ... 223s Selecting previously unselected package libdeflate0:arm64. 223s Preparing to unpack .../12-libdeflate0_1.23-2build1_arm64.deb ... 223s Unpacking libdeflate0:arm64 (1.23-2build1) ... 223s Selecting previously unselected package libgfortran5:arm64. 223s Preparing to unpack .../13-libgfortran5_15.2.0-12ubuntu1_arm64.deb ... 223s Unpacking libgfortran5:arm64 (15.2.0-12ubuntu1) ... 223s Selecting previously unselected package libgomp1:arm64. 224s Preparing to unpack .../14-libgomp1_15.2.0-12ubuntu1_arm64.deb ... 224s Unpacking libgomp1:arm64 (15.2.0-12ubuntu1) ... 224s Selecting previously unselected package libgraphite2-3:arm64. 224s Preparing to unpack .../15-libgraphite2-3_1.3.14-11ubuntu1_arm64.deb ... 224s Unpacking libgraphite2-3:arm64 (1.3.14-11ubuntu1) ... 224s Selecting previously unselected package libharfbuzz0b:arm64. 224s Preparing to unpack .../16-libharfbuzz0b_12.3.2-1_arm64.deb ... 224s Unpacking libharfbuzz0b:arm64 (12.3.2-1) ... 224s Selecting previously unselected package x11-common. 224s Preparing to unpack .../17-x11-common_1%3a7.7+24ubuntu1_all.deb ... 224s Unpacking x11-common (1:7.7+24ubuntu1) ... 224s Selecting previously unselected package libice6:arm64. 224s Preparing to unpack .../18-libice6_2%3a1.1.1-1build1_arm64.deb ... 224s Unpacking libice6:arm64 (2:1.1.1-1build1) ... 224s Selecting previously unselected package libjpeg-turbo8:arm64. 224s Preparing to unpack .../19-libjpeg-turbo8_2.1.5-4ubuntu3_arm64.deb ... 224s Unpacking libjpeg-turbo8:arm64 (2.1.5-4ubuntu3) ... 224s Selecting previously unselected package libjpeg8:arm64. 224s Preparing to unpack .../20-libjpeg8_8c-2ubuntu11_arm64.deb ... 224s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 224s Selecting previously unselected package liblapack3:arm64. 224s Preparing to unpack .../21-liblapack3_3.12.1-7ubuntu1_arm64.deb ... 224s Unpacking liblapack3:arm64 (3.12.1-7ubuntu1) ... 224s Selecting previously unselected package liblerc4:arm64. 224s Preparing to unpack .../22-liblerc4_4.0.0+ds-5ubuntu2_arm64.deb ... 224s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu2) ... 224s Selecting previously unselected package libthai-data. 224s Preparing to unpack .../23-libthai-data_0.1.30-1_all.deb ... 224s Unpacking libthai-data (0.1.30-1) ... 224s Selecting previously unselected package libthai0:arm64. 224s Preparing to unpack .../24-libthai0_0.1.30-1_arm64.deb ... 224s Unpacking libthai0:arm64 (0.1.30-1) ... 224s Selecting previously unselected package libpango-1.0-0:arm64. 224s Preparing to unpack .../25-libpango-1.0-0_1.57.0-1_arm64.deb ... 224s Unpacking libpango-1.0-0:arm64 (1.57.0-1) ... 224s Selecting previously unselected package libpangoft2-1.0-0:arm64. 224s Preparing to unpack .../26-libpangoft2-1.0-0_1.57.0-1_arm64.deb ... 224s Unpacking libpangoft2-1.0-0:arm64 (1.57.0-1) ... 224s Selecting previously unselected package libpangocairo-1.0-0:arm64. 224s Preparing to unpack .../27-libpangocairo-1.0-0_1.57.0-1_arm64.deb ... 224s Unpacking libpangocairo-1.0-0:arm64 (1.57.0-1) ... 224s Selecting previously unselected package libpaper2:arm64. 224s Preparing to unpack .../28-libpaper2_2.2.5-0.3build1_arm64.deb ... 224s Unpacking libpaper2:arm64 (2.2.5-0.3build1) ... 224s Selecting previously unselected package libpaper-utils. 224s Preparing to unpack .../29-libpaper-utils_2.2.5-0.3build1_arm64.deb ... 224s Unpacking libpaper-utils (2.2.5-0.3build1) ... 224s Selecting previously unselected package libsharpyuv0:arm64. 224s Preparing to unpack .../30-libsharpyuv0_1.5.0-0.1build1_arm64.deb ... 224s Unpacking libsharpyuv0:arm64 (1.5.0-0.1build1) ... 224s Selecting previously unselected package libsm6:arm64. 224s Preparing to unpack .../31-libsm6_2%3a1.2.6-1build1_arm64.deb ... 224s Unpacking libsm6:arm64 (2:1.2.6-1build1) ... 224s Selecting previously unselected package libtcl8.6:arm64. 224s Preparing to unpack .../32-libtcl8.6_8.6.17+dfsg-1build1_arm64.deb ... 224s Unpacking libtcl8.6:arm64 (8.6.17+dfsg-1build1) ... 224s Selecting previously unselected package libjbig0:arm64. 224s Preparing to unpack .../33-libjbig0_2.1-6.1ubuntu3_arm64.deb ... 224s Unpacking libjbig0:arm64 (2.1-6.1ubuntu3) ... 224s Selecting previously unselected package libwebp7:arm64. 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228s Creating config file /etc/R/Renviron with new version 228s Setting up r-cran-lattice (0.22-9-1) ... 228s Setting up r-cran-fit.models (0.64-1build1) ... 228s Setting up r-cran-mass (7.3-65-1) ... 228s Processing triggers for install-info (7.2-5) ... 228s Processing triggers for libc-bin (2.42-2ubuntu4) ... 228s Processing triggers for man-db (2.13.1-1build1) ... 230s autopkgtest [23:01:50]: test run-unit-test: [----------------------- 230s BEGIN TEST glmfm.R 230s 230s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 230s Copyright (C) 2025 The R Foundation for Statistical Computing 230s Platform: aarch64-unknown-linux-gnu 230s 230s R is free software and comes with ABSOLUTELY NO WARRANTY. 230s You are welcome to redistribute it under certain conditions. 230s Type 'license()' or 'licence()' for distribution details. 230s 230s R is a collaborative project with many contributors. 230s Type 'contributors()' for more information and 230s 'citation()' on how to cite R or R packages in publications. 230s 230s Type 'demo()' for some demos, 'help()' for on-line help, or 230s 'help.start()' for an HTML browser interface to help. 230s Type 'q()' to quit R. 230s 230s > options(warn = 2) 230s > 230s > library(fit.models) 230s > library(MASS) 230s > 230s > ################################################################################ 230s > # Test models with differenct formulas 230s > ################################################################################ 230s > 230s > counts <- c(18, 17, 15, 20, 10, 20, 25, 13, 12) 230s > outcome <- gl(3, 1, 9) 230s > treatment <- c(gl(3,2), gl(3,1)) 230s > d.AD <- data.frame(treatment, outcome, counts) 230s > 230s > trt <- glm(counts ~ treatment, family = poisson()) 230s > out <- glm(counts ~ outcome, family = poisson()) 230s > 230s > fm1 <- fit.models(trt, out) 230s > print(fm1) 230s 230s Calls: 230s trt: glm(formula = counts ~ treatment, family = poisson()) 230s out: glm(formula = counts ~ outcome, family = poisson()) 230s 230s Coefficients: 230s (Intercept) treatment2 treatment3 outcome2 outcome3 230s trt 2.9957 -0.2231 -0.3567 230s out 3.0445 -0.4543 -0.293 230s 230s > print(fm1.sum <- summary(fm1, correlation = TRUE)) 230s 230s Calls: 230s trt: glm(formula = counts ~ treatment, family = poisson()) 230s out: glm(formula = counts ~ outcome, family = poisson()) 230s 230s Deviance Residuals: 230s Min 1Q Median 3Q Max 230s trt: -1.1272 -0.6887 -0.4550 0.9622 1.506 230s out: -0.9666 -0.6712 -0.1696 0.8472 1.049 230s 230s Coefficients: 230s Estimate Std. Error z value Pr(>|z|) 230s (Intercept): trt: 2.9957 0.1291 23.205 <2e-16 *** 230s out: 3.0445 0.1260 24.165 <2e-16 *** 230s 230s treatment2: trt: -0.2231 0.1936 -1.152 0.2492 230s out: 230s 230s treatment3: trt: -0.3567 0.2012 -1.773 0.0763 . 230s out: 230s 230s outcome2: trt: 230s out: -0.4543 0.2022 -2.247 0.0246 * 230s 230s outcome3: trt: 230s out: -0.2930 0.1927 -1.520 0.1285 230s --- 230s Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1 230s 230s Null deviance: 230s trt: 10.58 on 8 degrees of freedom 230s out: 10.58 on 8 degrees of freedom 230s 230s Residual deviance: 230s trt: 7.267 on 6 degrees of freedom 230s out: 5.129 on 6 degrees of freedom 230s 230s Correlations: 230s trt: 230s (Intercept) treatment2 230s treatment2 -0.67 230s treatment3 -0.64 0.43 230s 230s out: 230s (Intercept) outcome2 230s outcome2 -0.62 230s outcome3 -0.65 0.41 230s 230s > 230s > pdf("fm1.pdf") 230s > plot(fm1, 1) 230s > plot(fm1, 2) 230s > plot(fm1, 3) 231s > plot(fm1, 4) 231s > plot(fm1, 5) 231s > plot(fm1, 6) 231s > dev.off() 231s null device 231s 1 231s > 231s > rm(fm1, fm1.sum) 231s > file.remove("fm1.pdf") 231s [1] TRUE 231s > 231s > 231s > ################################################################################ 231s > # Test models with different formulas 231s > ################################################################################ 231s > 231s > 231s > ## an example with offsets from Venables & Ripley (2002, p.189) 231s > utils::data(anorexia, package = "MASS") 231s > 231s > offset <- glm(Postwt ~ Prewt + Treat + offset(Prewt), family = gaussian, 231s + data = anorexia) 231s > 231s > no.offset <- glm(Postwt - Prewt ~ Treat, family = gaussian, data = anorexia) 231s > 231s > fm2 <- fit.models(offset, no.offset) 231s > print(fm2) 231s 231s Calls: 231s offset: glm(formula = Postwt ~ Prewt + Treat + offset(Prewt), family = gaussian, 231s data = anorexia) 231s no.offset: glm(formula = Postwt - Prewt ~ Treat, family = gaussian, data = anorexia) 231s 231s Coefficients: 231s (Intercept) Prewt TreatCont TreatFT 231s offset 49.7711 -0.5655 -4.0971 4.563 231s no.offset 3.0069 -3.4569 4.258 231s 231s > print(fm2.sum <- summary(fm2, correlation = TRUE)) 231s 231s Calls: 231s offset: glm(formula = Postwt ~ Prewt + Treat + offset(Prewt), family = gaussian, 231s data = anorexia) 231s no.offset: glm(formula = Postwt - Prewt ~ Treat, family = gaussian, data = anorexia) 231s 231s Deviance Residuals: 231s Min 1Q Median 3Q Max 231s offset: -14.11 -4.277 -0.5484 5.484 15.29 231s no.offset: -12.56 -4.543 -1.0069 3.846 17.89 231s 231s Coefficients: 231s Estimate Std. Error z value Pr(>|z|) 231s (Intercept): offset: 49.7711 13.3910 3.717 0.000410 *** 231s no.offset: 3.0069 1.3980 2.151 0.034992 * 231s 231s Prewt: offset: -0.5655 0.1612 -3.509 0.000803 *** 231s no.offset: 231s 231s TreatCont: offset: -4.0971 1.8935 -2.164 0.033999 * 231s no.offset: -3.4569 2.0333 -1.700 0.093608 . 231s 231s TreatFT: offset: 4.5631 2.1333 2.139 0.036035 * 231s no.offset: 4.2578 2.2996 1.852 0.068376 . 231s --- 231s Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1 231s 231s Null deviance: 231s offset: 4525 on 71 degrees of freedom 231s no.offset: 4525 on 71 degrees of freedom 231s 231s Residual deviance: 231s offset: 3311 on 68 degrees of freedom 231s no.offset: 3911 on 69 degrees of freedom 231s 231s Correlations: 231s offset: 231s (Intercept) Prewt TreatCont 231s Prewt -1.00 231s TreatCont -0.16 0.10 231s TreatFT -0.02 -0.04 0.41 231s 231s no.offset: 231s (Intercept) TreatCont 231s TreatCont -0.69 231s TreatFT -0.61 0.42 231s 231s > 231s > pdf("fm2.pdf") 231s > plot(fm2, 1) 231s > plot(fm2, 2) 231s > plot(fm2, 3) 231s > plot(fm2, 4) 231s > plot(fm2, 5) 231s > plot(fm2, 6) 231s > dev.off() 231s null device 231s 1 231s > 231s > rm(fm2, fm2.sum) 231s > file.remove("fm2.pdf") 231s [1] TRUE 231s > 231s > 231s > ################################################################################ 231s > # Test models with different formulas and subsets 231s > ################################################################################ 231s > 231s > m1 <- glm(Postwt ~ Prewt + Treat, family = gaussian, 231s + data = subset(anorexia, Prewt > 75)) 231s > 231s > m2 <- glm(Postwt ~ Treat, family = gaussian, data = anorexia) 231s > 231s > fm3 <- fit.models(m1, m2) 231s > print(fm3) 231s 231s Calls: 231s m1: glm(formula = Postwt ~ Prewt + Treat, family = gaussian, data = subset(anorexia, 231s Prewt > 75)) 231s m2: glm(formula = Postwt ~ Treat, family = gaussian, data = anorexia) 231s 231s Coefficients: 231s (Intercept) Prewt TreatCont TreatFT 231s m1 18.2207 0.8093 -4.6651 4.141 231s m2 85.6966 -4.5889 4.798 231s 231s > print(fm3.sum <- summary(fm3, correlation = TRUE)) 231s 231s Calls: 231s m1: glm(formula = Postwt ~ Prewt + Treat, family = gaussian, data = subset(anorexia, 231s Prewt > 75)) 231s m2: glm(formula = Postwt ~ Treat, family = gaussian, data = anorexia) 231s 231s Deviance Residuals: 231s Min 1Q Median 3Q Max 231s m1: -12.31 -4.747 -0.463868 4.579 13.59 231s m2: -15.29 -3.730 -0.002122 4.781 17.90 231s 231s Coefficients: 231s Estimate Std. Error z value Pr(>|z|) 231s (Intercept): m1: 18.2207 15.0442 1.211 0.2304 231s m2: 85.6966 1.3534 63.321 < 2e-16 *** 231s 231s Prewt: m1: 0.8093 0.1803 4.488 3.12e-05 *** 231s m2: 231s 231s TreatCont: m1: -4.6651 1.8353 -2.542 0.0135 * 231s m2: -4.5889 1.9684 -2.331 0.0227 * 231s 231s TreatFT: m1: 4.1408 2.0463 2.024 0.0473 * 231s m2: 4.7976 2.2262 2.155 0.0347 * 231s --- 231s Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1 231s 231s Null deviance: 231s m1: 4431 on 66 degrees of freedom 231s m2: 4584 on 71 degrees of freedom 231s 231s Residual deviance: 231s m1: 2676 on 63 degrees of freedom 231s m2: 3665 on 69 degrees of freedom 231s 231s Correlations: 231s m1: 231s (Intercept) Prewt TreatCont 231s Prewt -1.00 231s TreatCont -0.09 0.04 231s TreatFT 0.01 -0.06 0.40 231s 231s m2: 231s (Intercept) TreatCont 231s TreatCont -0.69 231s TreatFT -0.61 0.42 231s 231s > 231s > pdf("fm3.pdf") 231s > plot(fm3, 1) 231s > plot(fm3, 2) 231s > plot(fm3, 3) 231s > plot(fm3, 4) 231s > plot(fm3, 5) 231s > plot(fm3, 6) 231s > dev.off() 231s null device 231s 1 231s > 231s > rm(fm3, fm3.sum) 231s > file.remove("fm3.pdf") 231s [1] TRUE 231s > 231s > 231s > ################################################################################ 231s > 231s > 231s > 231s BEGIN TEST lmfm.R 231s 231s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 231s Copyright (C) 2025 The R Foundation for Statistical Computing 231s Platform: aarch64-unknown-linux-gnu 231s 231s R is free software and comes with ABSOLUTELY NO WARRANTY. 231s You are welcome to redistribute it under certain conditions. 231s Type 'license()' or 'licence()' for distribution details. 231s 231s R is a collaborative project with many contributors. 231s Type 'contributors()' for more information and 231s 'citation()' on how to cite R or R packages in publications. 231s 231s Type 'demo()' for some demos, 'help()' for on-line help, or 231s 'help.start()' for an HTML browser interface to help. 231s Type 'q()' to quit R. 231s 231s > options(warn = 2) 231s > 231s > data(stackloss) 231s > 231s > library(fit.models) 231s > library(MASS) 231s > 231s > # add rlm to the lmfm fit.models class 231s > fmclass.add.class("lmfm", "rlm") 231s > 231s > ################################################################################ 231s > # Test original syntax 231s > ################################################################################ 231s > 231s > fm1 <- fit.models(list(Robust = "rlm", LS = "lm"), stack.loss ~ ., data = stackloss) 231s rlm is already registered in the fit.models registry 231s > print(fm1) 231s 231s Calls: 231s Robust: rlm(formula = stack.loss ~ ., data = stackloss) 231s LS: lm(formula = stack.loss ~ ., data = stackloss) 231s 231s Coefficients: 231s (Intercept) Air.Flow Water.Temp Acid.Conc. 231s Robust -41.0265 0.8294 0.9261 -0.128 231s LS -39.9197 0.7156 1.2953 -0.152 231s 231s > print(fm1.sum <- summary(fm1, correlation = TRUE)) 231s 231s Calls: 231s Robust: rlm(formula = stack.loss ~ ., data = stackloss) 231s LS: lm(formula = stack.loss ~ ., data = stackloss) 231s 231s Residual Statistics: 231s Min 1Q Median 3Q Max 231s Robust: -8.918 -1.731 0.06187 1.543 6.502 231s LS: -7.238 -1.712 -0.45509 2.361 5.698 231s 231s Coefficients: 231s Estimate Std. Error t value Pr(>|t|) 231s (Intercept): Robust: -41.0265 9.8073 -4.183 231s LS: -39.9197 11.8960 -3.356 0.00375 ** 231s 231s Air.Flow: Robust: 0.8294 0.1112 7.460 231s LS: 0.7156 0.1349 5.307 5.8e-05 *** 231s 231s Water.Temp: Robust: 0.9261 0.3034 3.052 231s LS: 1.2953 0.3680 3.520 0.00263 ** 231s 231s Acid.Conc.: Robust: -0.1278 0.1289 -0.992 231s LS: -0.1521 0.1563 -0.973 0.34405 231s --- 231s Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1 231s 231s Residual Scale Estimates: 231s Robust: 2.441 on 17 degrees of freedom 231s LS: 3.243 on 17 degrees of freedom 231s 231s Multiple R-squared: 231s LS: 0.9136 231s 231s Correlations: 231s Robust: 231s (Intercept) Air.Flow Water.Temp 231s Air.Flow 0.18 231s Water.Temp -0.15 -0.74 231s Acid.Conc. -0.90 -0.34 0.00 231s 231s LS: 231s (Intercept) Air.Flow Water.Temp 231s Air.Flow 0.18 231s Water.Temp -0.15 -0.74 231s Acid.Conc. -0.90 -0.34 0.00 231s 231s > 231s > pdf("fm1.pdf") 232s > plot(fm1, 1) 232s > plot(fm1, 2) 232s > plot(fm1, 3) 232s > plot(fm1, 4) 232s > plot(fm1, 5) 232s > plot(fm1, 6) 232s > plot(fm1, 7) 232s > plot(fm1, 8) 232s > plot(fm1, 9) 232s > dev.off() 232s null device 232s 1 232s > 232s > rm(fm1, fm1.sum) 232s > file.remove("fm1.pdf") 232s [1] TRUE 232s > 232s > 232s > ################################################################################ 232s > # Test models with different subsets 232s > ################################################################################ 232s > 232s > complete <- lm(stack.loss ~ ., data = stackloss) 232s > clean <- lm(stack.loss ~ ., data = stackloss, subset = -c(1, 2, 4, 21)) 232s > fm2 <- fit.models(Clean = clean, Complete = complete) 232s > print(fm2) 232s 232s Calls: 232s Clean: lm(formula = stack.loss ~ ., data = stackloss, subset = -c(1, 232s 2, 4, 21)) 232s Complete: lm(formula = stack.loss ~ ., data = stackloss) 232s 232s Coefficients: 232s (Intercept) Air.Flow Water.Temp Acid.Conc. 232s Clean -42.0003 0.9555 0.5556 -0.113 232s Complete -39.9197 0.7156 1.2953 -0.152 232s 232s > print(fm2.sum <- summary(fm2, correlation = TRUE)) 232s 232s Calls: 232s Clean: lm(formula = stack.loss ~ ., data = stackloss, subset = -c(1, 232s 2, 4, 21)) 232s Complete: lm(formula = stack.loss ~ ., data = stackloss) 232s 232s Residual Statistics: 232s Min 1Q Median 3Q Max 232s Clean: -3.122 -1.333 -0.03041 0.9755 3.652 232s Complete: -7.238 -1.712 -0.45509 2.3614 5.698 232s 232s Coefficients: 232s Estimate Std. Error t value Pr(>|t|) 232s (Intercept): Clean: -42.00028 7.08242 -5.930 4.98e-05 *** 232s Complete: -39.91967 11.89600 -3.356 0.00375 ** 232s 232s Air.Flow: Clean: 0.95550 0.11018 8.672 9.15e-07 *** 232s Complete: 0.71564 0.13486 5.307 5.80e-05 *** 232s 232s Water.Temp: Clean: 0.55561 0.25128 2.211 0.04556 * 232s Complete: 1.29529 0.36802 3.520 0.00263 ** 232s 232s Acid.Conc.: Clean: -0.11339 0.09821 -1.155 0.26904 232s Complete: -0.15212 0.15629 -0.973 0.34405 232s --- 232s Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1 232s 232s Residual Scale Estimates: 232s Clean: 1.896 on 13 degrees of freedom 232s Complete: 3.243 on 17 degrees of freedom 232s 232s Multiple R-squared: 232s Clean: 0.9428 232s Complete: 0.9136 232s 232s Correlations: 232s Clean: 232s (Intercept) Air.Flow Water.Temp 232s Air.Flow 0.01 232s Water.Temp -0.10 -0.61 232s Acid.Conc. -0.79 -0.40 -0.07 232s 232s Complete: 232s (Intercept) Air.Flow Water.Temp 232s Air.Flow 0.18 232s Water.Temp -0.15 -0.74 232s Acid.Conc. -0.90 -0.34 0.00 232s 232s > 232s > pdf("fm2.pdf") 232s > plot(fm2, 1) 232s > plot(fm2, 2) 232s > plot(fm2, 3) 232s > plot(fm2, 4) 232s > plot(fm2, 5) 232s > plot(fm2, 6) 232s > plot(fm2, 7) 232s > plot(fm2, 8) 232s > plot(fm2, 9) 232s > dev.off() 232s null device 232s 1 232s > 232s > rm(fm2, fm2.sum) 232s > file.remove("fm2.pdf") 232s [1] TRUE 232s > 232s > 232s > ################################################################################ 232s > # Test models with different formulas 232s > ################################################################################ 232s > 232s > m1 <- lm(stack.loss ~ Air.Flow + Water.Temp, data = stackloss) 232s > m2 <- lm(stack.loss ~ Water.Temp + Acid.Conc., data = stackloss) 232s > fm3 <- fit.models(m1, m2) 232s > print(fm3) 232s 232s Calls: 232s m1: lm(formula = stack.loss ~ Air.Flow + Water.Temp, data = stackloss) 232s m2: lm(formula = stack.loss ~ Water.Temp + Acid.Conc., data = stackloss) 232s 232s Coefficients: 232s (Intercept) Air.Flow Water.Temp Acid.Conc. 232s m1 -50.3588 0.6712 1.2954 232s m2 -51.2361 2.7320 0.129 232s 232s > print(fm3.sum <- summary(fm3, correlation = TRUE)) 232s 232s Calls: 232s m1: lm(formula = stack.loss ~ Air.Flow + Water.Temp, data = stackloss) 232s m2: lm(formula = stack.loss ~ Water.Temp + Acid.Conc., data = stackloss) 232s 232s Residual Statistics: 232s Min 1Q Median 3Q Max 232s m1: -7.529 -1.75 0.1894 2.116 5.659 232s m2: -7.820 -2.86 -0.6656 3.123 8.329 232s 232s Coefficients: 232s Estimate Std. Error t value Pr(>|t|) 232s (Intercept): m1: -50.3588 5.1383 -9.801 1.22e-08 *** 232s m2: -51.2361 18.5374 -2.764 0.01279 * 232s 232s Air.Flow: m1: 0.6712 0.1267 5.298 4.90e-05 *** 232s m2: 232s 232s Water.Temp: m1: 1.2954 0.3675 3.525 0.00242 ** 232s m2: 2.7320 0.3949 6.919 1.82e-06 *** 232s 232s Acid.Conc.: m1: 232s m2: 0.1290 0.2329 0.554 0.58657 232s --- 232s Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1 232s 232s Residual Scale Estimates: 232s m1: 3.239 on 18 degrees of freedom 232s m2: 5.137 on 18 degrees of freedom 232s 232s Multiple R-squared: 232s m1: 0.9088 232s m2: 0.7704 232s 232s Correlations: 232s m1: 232s (Intercept) Air.Flow 232s Air.Flow -0.31 232s Water.Temp -0.34 -0.78 232s 232s m2: 232s (Intercept) Water.Temp 232s Water.Temp -0.03 232s Acid.Conc. -0.91 -0.39 232s 232s > 232s > pdf("fm3.pdf") 232s > plot(fm3, 1) 233s > plot(fm3, 2) 233s > plot(fm3, 3) 233s > plot(fm3, 4) 233s > plot(fm3, 5) 233s > plot(fm3, 6) 233s > plot(fm3, 7) 233s > plot(fm3, 8) 233s > plot(fm3, 9) 233s > dev.off() 233s null device 233s 1 233s > 233s > rm(fm3, fm3.sum) 233s > file.remove("fm3.pdf") 233s [1] TRUE 233s > 233s > 233s > ################################################################################ 233s > # Test models with different formulas and different subsets 233s > ################################################################################ 233s > 233s > m1 <- lm(stack.loss ~ Air.Flow + Water.Temp, data = stackloss, subset = -c(1, 2, 4, 21)) 233s > m2 <- lm(stack.loss ~ Water.Temp + Acid.Conc., data = stackloss) 233s > fm4 <- fit.models(m1, m2) 233s > print(fm4) 233s 233s Calls: 233s m1: lm(formula = stack.loss ~ Air.Flow + Water.Temp, data = stackloss, 233s subset = -c(1, 2, 4, 21)) 233s m2: lm(formula = stack.loss ~ Water.Temp + Acid.Conc., data = stackloss) 233s 233s Coefficients: 233s (Intercept) Air.Flow Water.Temp Acid.Conc. 233s m1 -48.4451 0.9052 0.5367 233s m2 -51.2361 2.7320 0.129 233s 233s > print(fm4.sum <- summary(fm4, correlation = TRUE)) 233s 233s Calls: 233s m1: lm(formula = stack.loss ~ Air.Flow + Water.Temp, data = stackloss, 233s subset = -c(1, 2, 4, 21)) 233s m2: lm(formula = stack.loss ~ Water.Temp + Acid.Conc., data = stackloss) 233s 233s Residual Statistics: 233s Min 1Q Median 3Q Max 233s m1: -2.719 -1.486 0.2814 0.9865 4.136 233s m2: -7.820 -2.860 -0.6656 3.1235 8.329 233s 233s Coefficients: 233s Estimate Std. Error t value Pr(>|t|) 233s (Intercept): m1: -48.4451 4.4107 -10.983 2.89e-08 *** 233s m2: -51.2361 18.5374 -2.764 0.0128 * 233s 233s Air.Flow: m1: 0.9052 0.1024 8.839 4.21e-07 *** 233s m2: 233s 233s Water.Temp: m1: 0.5367 0.2537 2.115 0.0528 . 233s m2: 2.7320 0.3949 6.919 1.82e-06 *** 233s 233s Acid.Conc.: m1: 233s m2: 0.1290 0.2329 0.554 0.5866 233s --- 233s Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1 233s 233s Residual Scale Estimates: 233s m1: 1.918 on 14 degrees of freedom 233s m2: 5.137 on 18 degrees of freedom 233s 233s Multiple R-squared: 233s m1: 0.9369 233s m2: 0.7704 233s 233s Correlations: 233s m1: 233s (Intercept) Air.Flow 233s Air.Flow -0.53 233s Water.Temp -0.24 -0.69 233s 233s m2: 233s (Intercept) Water.Temp 233s Water.Temp -0.03 233s Acid.Conc. -0.91 -0.39 233s 233s > 233s > pdf("fm4.pdf") 233s > plot(fm4, 1) 233s > plot(fm4, 2) 233s > plot(fm4, 3) 233s > plot(fm4, 4) 233s > plot(fm4, 5) 233s > plot(fm4, 6) 233s > plot(fm4, 7) 233s > plot(fm4, 8) 233s > plot(fm4, 9) 233s > dev.off() 233s null device 233s 1 233s > 233s > rm(fm4, fm4.sum) 233s > file.remove("fm4.pdf") 233s [1] TRUE 233s > 233s > 233s > ################################################################################ 233s > # Test simple linear regression 233s > ################################################################################ 233s > 233s > fm5 <- fit.models(list(Robust = "rlm", LS = "lm"), stack.loss ~ Acid.Conc., data = stackloss) 233s > print(fm5) 233s 233s Calls: 233s Robust: rlm(formula = stack.loss ~ Acid.Conc., data = stackloss) 233s LS: lm(formula = stack.loss ~ Acid.Conc., data = stackloss) 233s 233s Coefficients: 233s (Intercept) Acid.Conc. 233s Robust -32.07 0.547 233s LS -47.96 0.759 233s 233s > print(fm5.sum <- summary(fm5, correlation = TRUE)) 233s 233s Calls: 233s Robust: rlm(formula = stack.loss ~ Acid.Conc., data = stackloss) 233s LS: lm(formula = stack.loss ~ Acid.Conc., data = stackloss) 233s 233s Residual Statistics: 233s Min 1Q Median 3Q Max 233s Robust: -8.649 -2.744 0.1617 2.446 25.35 233s LS: -11.584 -5.584 -3.0659 1.247 22.42 233s 233s Coefficients: 233s Estimate Std. Error t value Pr(>|t|) 233s (Intercept): Robust: -32.0654 21.6292 -1.483 233s LS: -47.9632 34.5044 -1.390 0.1806 233s 233s Acid.Conc.: Robust: 0.5474 0.2502 2.188 233s LS: 0.7590 0.3992 1.901 0.0725 . 233s --- 233s Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1 233s 233s Residual Scale Estimates: 233s Robust: 4.037 on 19 degrees of freedom 233s LS: 9.565 on 19 degrees of freedom 233s 233s Multiple R-squared: 233s LS: 0.1599 233s 233s Correlations: 233s Robust: 233s (Intercept) 233s Acid.Conc. -1.00 233s 233s LS: 233s (Intercept) 233s Acid.Conc. -1.00 233s 233s > 233s > pdf("fm5.pdf") 233s > plot(fm5, 1) 233s > plot(fm5, 2) 234s > plot(fm5, 3) 234s > plot(fm5, 4) 234s > plot(fm5, 5) 234s > plot(fm5, 6) 234s > plot(fm5, 7) 234s > plot(fm5, 8) 234s > plot(fm5, 9) 234s > plot(fm5, 10) 234s > dev.off() 234s null device 234s 1 234s > 234s > rm(fm5, fm5.sum) 234s > file.remove("fm5.pdf") 234s [1] TRUE 234s > 234s > 234s > ################################################################################ 234s > 234s > 234s > 234s autopkgtest [23:01:54]: test run-unit-test: -----------------------] 235s run-unit-test PASS 235s autopkgtest [23:01:55]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 235s autopkgtest [23:01:55]: test pkg-r-autopkgtest: preparing testbed 235s Reading package lists... 235s Building dependency tree... 235s Reading state information... 236s Solving dependencies... 236s The following NEW packages will be installed: 236s build-essential cpp cpp-15 cpp-15-aarch64-linux-gnu cpp-aarch64-linux-gnu 236s dctrl-tools g++ g++-15 g++-15-aarch64-linux-gnu g++-aarch64-linux-gnu gcc 236s gcc-15 gcc-15-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-15 236s gfortran-15-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 236s libasan8 libblas-dev libbz2-dev libc-dev-bin libc6-dev libcc1-0 libcrypt-dev 236s libdeflate-dev libgcc-15-dev libgfortran-15-dev libhwasan0 libicu-dev 236s libisl23 libitm1 libjpeg-dev libjpeg-turbo8-dev libjpeg8-dev liblapack-dev 236s liblsan0 liblzma-dev libmpc3 libncurses-dev libpcre2-16-0 libpcre2-32-0 236s libpcre2-dev libpcre2-posix3 libpkgconf3 libpng-dev libreadline-dev 236s libstdc++-15-dev libtirpc-dev libtsan2 libubsan1 libzstd-dev linux-libc-dev 236s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-dev rpcsvc-proto zlib1g-dev 236s 0 upgraded, 60 newly installed, 0 to remove and 0 not upgraded. 236s Need to get 103 MB of archives. 236s After this operation, 377 MB of additional disk space will be used. 236s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 libc-dev-bin arm64 2.42-2ubuntu4 [22.5 kB] 236s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 linux-libc-dev arm64 6.19.0-3.3 [1819 kB] 239s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 libcrypt-dev arm64 1:4.5.1-1 [123 kB] 239s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 rpcsvc-proto arm64 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http://ftpmaster.internal/ubuntu resolute/main arm64 gfortran-15-aarch64-linux-gnu arm64 15.2.0-12ubuntu1 [12.5 MB] 389s Get:33 http://ftpmaster.internal/ubuntu resolute/main arm64 gfortran-15 arm64 15.2.0-12ubuntu1 [18.1 kB] 389s Get:34 http://ftpmaster.internal/ubuntu resolute/main arm64 gfortran-aarch64-linux-gnu arm64 4:15.2.0-4ubuntu1 [1022 B] 389s Get:35 http://ftpmaster.internal/ubuntu resolute/main arm64 gfortran arm64 4:15.2.0-4ubuntu1 [1160 B] 389s Get:36 http://ftpmaster.internal/ubuntu resolute/main arm64 icu-devtools arm64 78.2-1ubuntu1 [207 kB] 389s Get:37 http://ftpmaster.internal/ubuntu resolute/main arm64 libblas-dev arm64 3.12.1-7ubuntu1 [160 kB] 389s Get:38 http://ftpmaster.internal/ubuntu resolute/main arm64 libbz2-dev arm64 1.0.8-6build2 [34.9 kB] 389s Get:39 http://ftpmaster.internal/ubuntu resolute/main arm64 libdeflate-dev arm64 1.23-2build1 [54.3 kB] 389s Get:40 http://ftpmaster.internal/ubuntu resolute/main arm64 libicu-dev arm64 78.2-1ubuntu1 [12.5 MB] 414s Get:41 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg-turbo8-dev arm64 2.1.5-4ubuntu3 [301 kB] 414s Get:42 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 414s Get:43 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 414s Get:44 http://ftpmaster.internal/ubuntu resolute/main arm64 liblapack-dev arm64 3.12.1-7ubuntu1 [4456 kB] 434s Get:45 http://ftpmaster.internal/ubuntu resolute/main arm64 libncurses-dev arm64 6.6+20251231-1 [391 kB] 434s Get:46 http://ftpmaster.internal/ubuntu resolute/main arm64 libpcre2-16-0 arm64 10.46-1 [225 kB] 434s Get:47 http://ftpmaster.internal/ubuntu resolute/main arm64 libpcre2-32-0 arm64 10.46-1 [213 kB] 434s Get:48 http://ftpmaster.internal/ubuntu resolute/main arm64 libpcre2-posix3 arm64 10.46-1 [7300 B] 434s Get:49 http://ftpmaster.internal/ubuntu resolute/main arm64 libpcre2-dev arm64 10.46-1 [772 kB] 435s Get:50 http://ftpmaster.internal/ubuntu resolute/main arm64 libpkgconf3 arm64 1.8.1-4build1 [33.7 kB] 435s Get:51 http://ftpmaster.internal/ubuntu resolute/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu2 [899 kB] 437s Get:52 http://ftpmaster.internal/ubuntu resolute/main arm64 libpng-dev arm64 1.6.54-1 [268 kB] 437s Get:53 http://ftpmaster.internal/ubuntu resolute/main arm64 libreadline-dev arm64 8.3-3 [199 kB] 437s Get:54 http://ftpmaster.internal/ubuntu resolute/main arm64 libzstd-dev arm64 1.5.7+dfsg-3 [349 kB] 437s Get:55 http://ftpmaster.internal/ubuntu resolute/main arm64 liblzma-dev arm64 5.8.2-2 [180 kB] 437s Get:56 http://ftpmaster.internal/ubuntu resolute/main arm64 pkgconf-bin arm64 1.8.1-4build1 [21.7 kB] 437s Get:57 http://ftpmaster.internal/ubuntu resolute/main arm64 pkgconf arm64 1.8.1-4build1 [16.8 kB] 437s Get:58 http://ftpmaster.internal/ubuntu resolute/main arm64 libtirpc-dev arm64 1.3.6+ds-1 [202 kB] 437s Get:59 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-base-dev all 4.5.2-1ubuntu2 [1880 B] 437s Get:60 http://ftpmaster.internal/ubuntu resolute/universe arm64 pkg-r-autopkgtest all 20250812 [6158 B] 437s Fetched 103 MB in 3min 21s (511 kB/s) 437s Selecting previously unselected package libc-dev-bin. 437s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 138962 files and directories currently installed.) 437s Preparing to unpack .../00-libc-dev-bin_2.42-2ubuntu4_arm64.deb ... 437s Unpacking libc-dev-bin (2.42-2ubuntu4) ... 437s Selecting previously unselected package linux-libc-dev:arm64. 437s Preparing to unpack .../01-linux-libc-dev_6.19.0-3.3_arm64.deb ... 437s Unpacking linux-libc-dev:arm64 (6.19.0-3.3) ... 438s Selecting previously unselected package libcrypt-dev:arm64. 438s Preparing to unpack .../02-libcrypt-dev_1%3a4.5.1-1_arm64.deb ... 438s Unpacking libcrypt-dev:arm64 (1:4.5.1-1) ... 438s Selecting previously unselected package rpcsvc-proto. 438s Preparing to unpack .../03-rpcsvc-proto_1.4.3-1build1_arm64.deb ... 438s Unpacking rpcsvc-proto (1.4.3-1build1) ... 438s Selecting previously unselected package libc6-dev:arm64. 438s Preparing to unpack .../04-libc6-dev_2.42-2ubuntu4_arm64.deb ... 438s Unpacking libc6-dev:arm64 (2.42-2ubuntu4) ... 438s Selecting previously unselected package libisl23:arm64. 438s Preparing to unpack .../05-libisl23_0.27-1build1_arm64.deb ... 438s Unpacking libisl23:arm64 (0.27-1build1) ... 438s Selecting previously unselected package libmpc3:arm64. 438s Preparing to unpack .../06-libmpc3_1.3.1-2_arm64.deb ... 438s Unpacking libmpc3:arm64 (1.3.1-2) ... 438s Selecting previously unselected package cpp-15-aarch64-linux-gnu. 438s Preparing to unpack .../07-cpp-15-aarch64-linux-gnu_15.2.0-12ubuntu1_arm64.deb ... 438s Unpacking cpp-15-aarch64-linux-gnu (15.2.0-12ubuntu1) ... 438s Selecting previously unselected package cpp-15. 438s Preparing to unpack .../08-cpp-15_15.2.0-12ubuntu1_arm64.deb ... 438s Unpacking cpp-15 (15.2.0-12ubuntu1) ... 438s Selecting previously unselected package cpp-aarch64-linux-gnu. 438s Preparing to unpack .../09-cpp-aarch64-linux-gnu_4%3a15.2.0-4ubuntu1_arm64.deb ... 438s Unpacking cpp-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 438s Selecting previously unselected package cpp. 438s Preparing to unpack .../10-cpp_4%3a15.2.0-4ubuntu1_arm64.deb ... 438s Unpacking cpp (4:15.2.0-4ubuntu1) ... 438s Selecting previously unselected package libcc1-0:arm64. 438s Preparing to unpack .../11-libcc1-0_15.2.0-12ubuntu1_arm64.deb ... 438s Unpacking libcc1-0:arm64 (15.2.0-12ubuntu1) ... 438s Selecting previously unselected package libitm1:arm64. 438s Preparing to unpack .../12-libitm1_15.2.0-12ubuntu1_arm64.deb ... 438s Unpacking libitm1:arm64 (15.2.0-12ubuntu1) ... 438s Selecting previously unselected package libasan8:arm64. 438s Preparing to unpack .../13-libasan8_15.2.0-12ubuntu1_arm64.deb ... 438s Unpacking libasan8:arm64 (15.2.0-12ubuntu1) ... 438s Selecting previously unselected package liblsan0:arm64. 438s Preparing to unpack .../14-liblsan0_15.2.0-12ubuntu1_arm64.deb ... 438s Unpacking liblsan0:arm64 (15.2.0-12ubuntu1) ... 438s Selecting previously unselected package libtsan2:arm64. 438s Preparing to unpack .../15-libtsan2_15.2.0-12ubuntu1_arm64.deb ... 438s Unpacking libtsan2:arm64 (15.2.0-12ubuntu1) ... 438s Selecting previously unselected package libubsan1:arm64. 439s Preparing to unpack .../16-libubsan1_15.2.0-12ubuntu1_arm64.deb ... 439s Unpacking libubsan1:arm64 (15.2.0-12ubuntu1) ... 439s Selecting previously unselected package libhwasan0:arm64. 439s Preparing to unpack .../17-libhwasan0_15.2.0-12ubuntu1_arm64.deb ... 439s Unpacking libhwasan0:arm64 (15.2.0-12ubuntu1) ... 439s Selecting previously unselected package libgcc-15-dev:arm64. 439s Preparing to unpack .../18-libgcc-15-dev_15.2.0-12ubuntu1_arm64.deb ... 439s Unpacking libgcc-15-dev:arm64 (15.2.0-12ubuntu1) ... 439s Selecting previously unselected package gcc-15-aarch64-linux-gnu. 439s Preparing to unpack .../19-gcc-15-aarch64-linux-gnu_15.2.0-12ubuntu1_arm64.deb ... 439s Unpacking gcc-15-aarch64-linux-gnu (15.2.0-12ubuntu1) ... 439s Selecting previously unselected package gcc-15. 439s Preparing to unpack .../20-gcc-15_15.2.0-12ubuntu1_arm64.deb ... 439s Unpacking gcc-15 (15.2.0-12ubuntu1) ... 439s Selecting previously unselected package gcc-aarch64-linux-gnu. 439s Preparing to unpack .../21-gcc-aarch64-linux-gnu_4%3a15.2.0-4ubuntu1_arm64.deb ... 439s Unpacking gcc-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 439s Selecting previously unselected package gcc. 439s Preparing to unpack .../22-gcc_4%3a15.2.0-4ubuntu1_arm64.deb ... 439s Unpacking gcc (4:15.2.0-4ubuntu1) ... 439s Selecting previously unselected package libstdc++-15-dev:arm64. 439s Preparing to unpack .../23-libstdc++-15-dev_15.2.0-12ubuntu1_arm64.deb ... 439s Unpacking libstdc++-15-dev:arm64 (15.2.0-12ubuntu1) ... 439s Selecting previously unselected package g++-15-aarch64-linux-gnu. 439s Preparing to unpack .../24-g++-15-aarch64-linux-gnu_15.2.0-12ubuntu1_arm64.deb ... 439s Unpacking g++-15-aarch64-linux-gnu (15.2.0-12ubuntu1) ... 440s Selecting previously unselected package g++-15. 440s Preparing to unpack .../25-g++-15_15.2.0-12ubuntu1_arm64.deb ... 440s Unpacking g++-15 (15.2.0-12ubuntu1) ... 440s Selecting previously unselected package g++-aarch64-linux-gnu. 440s Preparing to unpack .../26-g++-aarch64-linux-gnu_4%3a15.2.0-4ubuntu1_arm64.deb ... 440s Unpacking g++-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 440s Selecting previously unselected package g++. 440s Preparing to unpack .../27-g++_4%3a15.2.0-4ubuntu1_arm64.deb ... 440s Unpacking g++ (4:15.2.0-4ubuntu1) ... 440s Selecting previously unselected package build-essential. 440s Preparing to unpack .../28-build-essential_12.12ubuntu2_arm64.deb ... 440s Unpacking build-essential (12.12ubuntu2) ... 440s Selecting previously unselected package dctrl-tools. 440s Preparing to unpack .../29-dctrl-tools_2.24-3build4_arm64.deb ... 440s Unpacking dctrl-tools (2.24-3build4) ... 440s Selecting previously unselected package libgfortran-15-dev:arm64. 440s Preparing to unpack .../30-libgfortran-15-dev_15.2.0-12ubuntu1_arm64.deb ... 440s Unpacking libgfortran-15-dev:arm64 (15.2.0-12ubuntu1) ... 440s Selecting previously unselected package gfortran-15-aarch64-linux-gnu. 440s Preparing to unpack .../31-gfortran-15-aarch64-linux-gnu_15.2.0-12ubuntu1_arm64.deb ... 440s Unpacking gfortran-15-aarch64-linux-gnu (15.2.0-12ubuntu1) ... 440s Selecting previously unselected package gfortran-15. 440s Preparing to unpack .../32-gfortran-15_15.2.0-12ubuntu1_arm64.deb ... 440s Unpacking gfortran-15 (15.2.0-12ubuntu1) ... 440s Selecting previously unselected package gfortran-aarch64-linux-gnu. 440s Preparing to unpack .../33-gfortran-aarch64-linux-gnu_4%3a15.2.0-4ubuntu1_arm64.deb ... 440s Unpacking gfortran-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 440s Selecting previously unselected package gfortran. 440s Preparing to unpack .../34-gfortran_4%3a15.2.0-4ubuntu1_arm64.deb ... 440s Unpacking gfortran (4:15.2.0-4ubuntu1) ... 440s Selecting previously unselected package icu-devtools. 440s Preparing to unpack .../35-icu-devtools_78.2-1ubuntu1_arm64.deb ... 440s Unpacking icu-devtools (78.2-1ubuntu1) ... 440s Selecting previously unselected package libblas-dev:arm64. 440s Preparing to unpack .../36-libblas-dev_3.12.1-7ubuntu1_arm64.deb ... 440s Unpacking libblas-dev:arm64 (3.12.1-7ubuntu1) ... 440s Selecting previously unselected package libbz2-dev:arm64. 440s Preparing to unpack .../37-libbz2-dev_1.0.8-6build2_arm64.deb ... 440s Unpacking libbz2-dev:arm64 (1.0.8-6build2) ... 440s Selecting previously unselected package libdeflate-dev:arm64. 440s Preparing to unpack .../38-libdeflate-dev_1.23-2build1_arm64.deb ... 440s Unpacking libdeflate-dev:arm64 (1.23-2build1) ... 440s Selecting previously unselected package libicu-dev:arm64. 440s Preparing to unpack .../39-libicu-dev_78.2-1ubuntu1_arm64.deb ... 440s Unpacking libicu-dev:arm64 (78.2-1ubuntu1) ... 441s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 441s Preparing to unpack .../40-libjpeg-turbo8-dev_2.1.5-4ubuntu3_arm64.deb ... 441s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-4ubuntu3) ... 441s Selecting previously unselected package libjpeg8-dev:arm64. 441s Preparing to unpack .../41-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 441s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 441s Selecting previously unselected package libjpeg-dev:arm64. 441s Preparing to unpack .../42-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 441s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 441s Selecting previously unselected package liblapack-dev:arm64. 441s Preparing to unpack .../43-liblapack-dev_3.12.1-7ubuntu1_arm64.deb ... 441s Unpacking liblapack-dev:arm64 (3.12.1-7ubuntu1) ... 441s Selecting previously unselected package libncurses-dev:arm64. 441s Preparing to unpack .../44-libncurses-dev_6.6+20251231-1_arm64.deb ... 441s Unpacking libncurses-dev:arm64 (6.6+20251231-1) ... 441s Selecting previously unselected package libpcre2-16-0:arm64. 441s Preparing to unpack .../45-libpcre2-16-0_10.46-1_arm64.deb ... 441s Unpacking libpcre2-16-0:arm64 (10.46-1) ... 441s Selecting previously unselected package libpcre2-32-0:arm64. 441s Preparing to unpack .../46-libpcre2-32-0_10.46-1_arm64.deb ... 441s Unpacking libpcre2-32-0:arm64 (10.46-1) ... 441s Selecting previously unselected package libpcre2-posix3:arm64. 441s Preparing to unpack .../47-libpcre2-posix3_10.46-1_arm64.deb ... 441s Unpacking libpcre2-posix3:arm64 (10.46-1) ... 441s Selecting previously unselected package libpcre2-dev:arm64. 441s Preparing to unpack .../48-libpcre2-dev_10.46-1_arm64.deb ... 441s Unpacking libpcre2-dev:arm64 (10.46-1) ... 441s Selecting previously unselected package libpkgconf3:arm64. 441s Preparing to unpack .../49-libpkgconf3_1.8.1-4build1_arm64.deb ... 441s Unpacking libpkgconf3:arm64 (1.8.1-4build1) ... 441s Selecting previously unselected package zlib1g-dev:arm64. 441s Preparing to unpack .../50-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu2_arm64.deb ... 441s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu2) ... 441s Selecting previously unselected package libpng-dev:arm64. 441s Preparing to unpack .../51-libpng-dev_1.6.54-1_arm64.deb ... 441s Unpacking libpng-dev:arm64 (1.6.54-1) ... 441s Selecting previously unselected package libreadline-dev:arm64. 441s Preparing to unpack .../52-libreadline-dev_8.3-3_arm64.deb ... 441s Unpacking libreadline-dev:arm64 (8.3-3) ... 441s Selecting previously unselected package libzstd-dev:arm64. 441s Preparing to unpack .../53-libzstd-dev_1.5.7+dfsg-3_arm64.deb ... 441s Unpacking libzstd-dev:arm64 (1.5.7+dfsg-3) ... 441s Selecting previously unselected package liblzma-dev:arm64. 441s Preparing to unpack .../54-liblzma-dev_5.8.2-2_arm64.deb ... 441s Unpacking liblzma-dev:arm64 (5.8.2-2) ... 441s Selecting previously unselected package pkgconf-bin. 441s Preparing to unpack .../55-pkgconf-bin_1.8.1-4build1_arm64.deb ... 441s Unpacking pkgconf-bin (1.8.1-4build1) ... 441s Selecting previously unselected package pkgconf:arm64. 442s Preparing to unpack .../56-pkgconf_1.8.1-4build1_arm64.deb ... 442s Unpacking pkgconf:arm64 (1.8.1-4build1) ... 442s Selecting previously unselected package libtirpc-dev:arm64. 442s Preparing to unpack .../57-libtirpc-dev_1.3.6+ds-1_arm64.deb ... 442s Unpacking libtirpc-dev:arm64 (1.3.6+ds-1) ... 442s Selecting previously unselected package r-base-dev. 442s Preparing to unpack .../58-r-base-dev_4.5.2-1ubuntu2_all.deb ... 442s Unpacking r-base-dev (4.5.2-1ubuntu2) ... 442s Selecting previously unselected package pkg-r-autopkgtest. 442s Preparing to unpack .../59-pkg-r-autopkgtest_20250812_all.deb ... 442s Unpacking pkg-r-autopkgtest (20250812) ... 442s Setting up libzstd-dev:arm64 (1.5.7+dfsg-3) ... 442s Setting up linux-libc-dev:arm64 (6.19.0-3.3) ... 442s Setting up libpcre2-16-0:arm64 (10.46-1) ... 442s Setting up libpcre2-32-0:arm64 (10.46-1) ... 442s Setting up libtirpc-dev:arm64 (1.3.6+ds-1) ... 442s Setting up libpkgconf3:arm64 (1.8.1-4build1) ... 442s Setting up rpcsvc-proto (1.4.3-1build1) ... 442s Setting up libmpc3:arm64 (1.3.1-2) ... 442s Setting up icu-devtools (78.2-1ubuntu1) ... 442s Setting up pkgconf-bin (1.8.1-4build1) ... 442s Setting up liblzma-dev:arm64 (5.8.2-2) ... 442s Setting up libubsan1:arm64 (15.2.0-12ubuntu1) ... 442s Setting up libpcre2-posix3:arm64 (10.46-1) ... 442s Setting up libhwasan0:arm64 (15.2.0-12ubuntu1) ... 442s Setting up libcrypt-dev:arm64 (1:4.5.1-1) ... 442s Setting up libasan8:arm64 (15.2.0-12ubuntu1) ... 442s Setting up libtsan2:arm64 (15.2.0-12ubuntu1) ... 442s Setting up libisl23:arm64 (0.27-1build1) ... 442s Setting up libc-dev-bin (2.42-2ubuntu4) ... 442s Setting up libdeflate-dev:arm64 (1.23-2build1) ... 442s Setting up libcc1-0:arm64 (15.2.0-12ubuntu1) ... 442s Setting up liblsan0:arm64 (15.2.0-12ubuntu1) ... 442s Setting up libblas-dev:arm64 (3.12.1-7ubuntu1) ... 442s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode 442s Setting up dctrl-tools (2.24-3build4) ... 442s Setting up libitm1:arm64 (15.2.0-12ubuntu1) ... 442s Setting up cpp-15-aarch64-linux-gnu (15.2.0-12ubuntu1) ... 442s Setting up libgcc-15-dev:arm64 (15.2.0-12ubuntu1) ... 442s Setting up libgfortran-15-dev:arm64 (15.2.0-12ubuntu1) ... 442s Setting up pkgconf:arm64 (1.8.1-4build1) ... 442s Setting up cpp-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 442s Setting up liblapack-dev:arm64 (3.12.1-7ubuntu1) ... 442s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode 442s Setting up cpp-15 (15.2.0-12ubuntu1) ... 442s Setting up cpp (4:15.2.0-4ubuntu1) ... 442s Setting up libc6-dev:arm64 (2.42-2ubuntu4) ... 442s Setting up libicu-dev:arm64 (78.2-1ubuntu1) ... 442s Setting up libbz2-dev:arm64 (1.0.8-6build2) ... 442s Setting up libjpeg-turbo8-dev:arm64 (2.1.5-4ubuntu3) ... 442s Setting up libncurses-dev:arm64 (6.6+20251231-1) ... 442s Setting up gcc-15-aarch64-linux-gnu (15.2.0-12ubuntu1) ... 442s Setting up libpcre2-dev:arm64 (10.46-1) ... 442s Setting up libreadline-dev:arm64 (8.3-3) ... 442s Setting up gcc-15 (15.2.0-12ubuntu1) ... 442s Setting up libstdc++-15-dev:arm64 (15.2.0-12ubuntu1) ... 442s Setting up gfortran-15-aarch64-linux-gnu (15.2.0-12ubuntu1) ... 442s Setting up g++-15-aarch64-linux-gnu (15.2.0-12ubuntu1) ... 442s Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu2) ... 442s Setting up libjpeg8-dev:arm64 (8c-2ubuntu11) ... 442s Setting up g++-15 (15.2.0-12ubuntu1) ... 442s Setting up gfortran-15 (15.2.0-12ubuntu1) ... 442s Setting up gcc-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 442s Setting up libpng-dev:arm64 (1.6.54-1) ... 442s Setting up libjpeg-dev:arm64 (8c-2ubuntu11) ... 442s Setting up gcc (4:15.2.0-4ubuntu1) ... 442s Setting up g++-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 442s Setting up gfortran-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 442s Setting up gfortran (4:15.2.0-4ubuntu1) ... 442s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 442s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 442s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 442s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 442s Setting up g++ (4:15.2.0-4ubuntu1) ... 442s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 442s Setting up build-essential (12.12ubuntu2) ... 442s Setting up r-base-dev (4.5.2-1ubuntu2) ... 442s Setting up pkg-r-autopkgtest (20250812) ... 442s Processing triggers for libc-bin (2.42-2ubuntu4) ... 442s Processing triggers for man-db (2.13.1-1build1) ... 443s Processing triggers for install-info (7.2-5) ... 444s autopkgtest [23:05:24]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 444s autopkgtest [23:05:24]: test pkg-r-autopkgtest: [----------------------- 444s Test: Try to load the R library fit.models 444s 444s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 444s Copyright (C) 2025 The R Foundation for Statistical Computing 444s Platform: aarch64-unknown-linux-gnu 444s 444s R is free software and comes with ABSOLUTELY NO WARRANTY. 444s You are welcome to redistribute it under certain conditions. 444s Type 'license()' or 'licence()' for distribution details. 444s 444s R is a collaborative project with many contributors. 444s Type 'contributors()' for more information and 444s 'citation()' on how to cite R or R packages in publications. 444s 444s Type 'demo()' for some demos, 'help()' for on-line help, or 444s 'help.start()' for an HTML browser interface to help. 444s Type 'q()' to quit R. 444s 444s > library('fit.models') 444s > 444s autopkgtest [23:05:24]: test pkg-r-autopkgtest: -----------------------] 445s pkg-r-autopkgtest PASS 445s autopkgtest [23:05:25]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 445s autopkgtest [23:05:25]: @@@@@@@@@@@@@@@@@@@@ summary 445s run-unit-test PASS 445s pkg-r-autopkgtest PASS