0s autopkgtest [22:50:21]: starting date and time: 2026-02-09 22:50:21+0000 0s autopkgtest [22:50:21]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [22:50:21]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.wgj79vkg/out --timeout-copy=6000 --needs-internet=try --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:lattice --apt-upgrade r-cran-bio3d --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=lattice/0.22-9-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-arm64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@sto01-arm64-8.secgroup --name adt-resolute-arm64-r-cran-bio3d-20260209-225021-juju-7f2275-prod-proposed-migration-environment-15-022c8fba-4189-4e2a-9df4-ca7eb3bd14b2 --image adt/ubuntu-resolute-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-autopkgtest-workers-arm64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 3s Creating nova instance adt-resolute-arm64-r-cran-bio3d-20260209-225021-juju-7f2275-prod-proposed-migration-environment-15-022c8fba-4189-4e2a-9df4-ca7eb3bd14b2 from image adt/ubuntu-resolute-arm64-server-20260209.img (UUID 793037ca-75af-461b-82de-f8081300b2e3)... 143s autopkgtest [22:52:44]: testbed dpkg architecture: arm64 143s autopkgtest [22:52:44]: testbed apt version: 3.1.15 144s autopkgtest [22:52:45]: @@@@@@@@@@@@@@@@@@@@ test bed setup 144s autopkgtest [22:52:45]: testbed release detected to be: None 144s autopkgtest [22:52:45]: updating testbed package index (apt update) 145s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 145s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 145s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 145s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 145s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1645 kB] 148s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [176 kB] 148s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [29.4 kB] 148s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 Packages [246 kB] 148s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 c-n-f Metadata [6216 B] 148s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 c-n-f Metadata [304 B] 148s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 Packages [1580 kB] 151s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 c-n-f Metadata [32.0 kB] 151s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 Packages [21.7 kB] 151s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 c-n-f Metadata [688 B] 153s Fetched 3862 kB in 6s (596 kB/s) 153s Reading package lists... 154s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 154s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 154s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 154s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 155s Reading package lists... 155s Reading package lists... 155s Building dependency tree... 155s Reading state information... 156s Calculating upgrade... 156s The following packages will be upgraded: 156s cryptsetup-bin dracut-install iproute2 iptables libcryptsetup12 libip4tc2 156s libip6tc2 libxtables12 wget 156s 9 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 156s Need to get 2534 kB of archives. 156s After this operation, 18.4 kB of additional disk space will be used. 156s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 iptables arm64 1.8.11-2ubuntu3 [386 kB] 156s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 libip4tc2 arm64 1.8.11-2ubuntu3 [24.3 kB] 156s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 libip6tc2 arm64 1.8.11-2ubuntu3 [24.7 kB] 156s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 libxtables12 arm64 1.8.11-2ubuntu3 [36.7 kB] 156s Get:5 http://ftpmaster.internal/ubuntu resolute/main arm64 iproute2 arm64 6.18.0-1ubuntu1 [1171 kB] 159s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 libcryptsetup12 arm64 2:2.8.0-1ubuntu3 [274 kB] 159s Get:7 http://ftpmaster.internal/ubuntu resolute/main arm64 wget arm64 1.25.0-2ubuntu4 [344 kB] 159s Get:8 http://ftpmaster.internal/ubuntu resolute/main arm64 cryptsetup-bin arm64 2:2.8.0-1ubuntu3 [227 kB] 159s Get:9 http://ftpmaster.internal/ubuntu resolute/main arm64 dracut-install arm64 109-11ubuntu1 [45.3 kB] 159s dpkg-preconfigure: unable to re-open stdin: No such file or directory 159s Fetched 2534 kB in 3s (863 kB/s) 160s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 136597 files and directories currently installed.) 160s Preparing to unpack .../0-iptables_1.8.11-2ubuntu3_arm64.deb ... 160s Unpacking iptables (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 161s Preparing to unpack .../1-libip4tc2_1.8.11-2ubuntu3_arm64.deb ... 161s Unpacking libip4tc2:arm64 (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 161s Preparing to unpack .../2-libip6tc2_1.8.11-2ubuntu3_arm64.deb ... 161s Unpacking libip6tc2:arm64 (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 161s Preparing to unpack .../3-libxtables12_1.8.11-2ubuntu3_arm64.deb ... 161s Unpacking libxtables12:arm64 (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 161s Preparing to unpack .../4-iproute2_6.18.0-1ubuntu1_arm64.deb ... 161s Unpacking iproute2 (6.18.0-1ubuntu1) over (6.16.0-1ubuntu3) ... 161s Preparing to unpack .../5-libcryptsetup12_2%3a2.8.0-1ubuntu3_arm64.deb ... 161s Unpacking libcryptsetup12:arm64 (2:2.8.0-1ubuntu3) over (2:2.8.0-1ubuntu2) ... 161s Preparing to unpack .../6-wget_1.25.0-2ubuntu4_arm64.deb ... 161s Unpacking wget (1.25.0-2ubuntu4) over (1.25.0-2ubuntu3) ... 161s Preparing to unpack .../7-cryptsetup-bin_2%3a2.8.0-1ubuntu3_arm64.deb ... 161s Unpacking cryptsetup-bin (2:2.8.0-1ubuntu3) over (2:2.8.0-1ubuntu2) ... 161s Preparing to unpack .../8-dracut-install_109-11ubuntu1_arm64.deb ... 161s Unpacking dracut-install (109-11ubuntu1) over (109-9ubuntu1) ... 161s Setting up libip4tc2:arm64 (1.8.11-2ubuntu3) ... 161s Setting up wget (1.25.0-2ubuntu4) ... 161s Setting up libip6tc2:arm64 (1.8.11-2ubuntu3) ... 161s Setting up libxtables12:arm64 (1.8.11-2ubuntu3) ... 161s Setting up dracut-install (109-11ubuntu1) ... 161s Setting up libcryptsetup12:arm64 (2:2.8.0-1ubuntu3) ... 161s Setting up cryptsetup-bin (2:2.8.0-1ubuntu3) ... 161s Setting up iptables (1.8.11-2ubuntu3) ... 161s Setting up iproute2 (6.18.0-1ubuntu1) ... 161s Processing triggers for man-db (2.13.1-1build1) ... 162s Processing triggers for install-info (7.2-5) ... 162s Processing triggers for libc-bin (2.42-2ubuntu4) ... 162s autopkgtest [22:53:03]: upgrading testbed (apt dist-upgrade and autopurge) 163s Reading package lists... 163s Building dependency tree... 163s Reading state information... 163s Calculating upgrade... 164s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 164s Reading package lists... 164s Building dependency tree... 164s Reading state information... 164s Solving dependencies... 165s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 167s autopkgtest [22:53:08]: testbed running kernel: Linux 6.19.0-3-generic #3-Ubuntu SMP PREEMPT_DYNAMIC Fri Jan 23 19:46:27 UTC 2026 167s autopkgtest [22:53:08]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-bio3d 171s Get:1 http://ftpmaster.internal/ubuntu resolute/universe r-cran-bio3d 2.4-5-1 (dsc) [2285 B] 171s Get:2 http://ftpmaster.internal/ubuntu resolute/universe r-cran-bio3d 2.4-5-1 (tar) [1544 kB] 171s Get:3 http://ftpmaster.internal/ubuntu resolute/universe r-cran-bio3d 2.4-5-1 (diff) [5468 B] 172s gpgv: Signature made Wed Jan 29 00:14:06 2025 UTC 172s gpgv: using RSA key 73471499CC60ED9EEE805946C5BD6C8F2295D502 172s gpgv: issuer "plessy@debian.org" 172s gpgv: Can't check signature: No public key 172s dpkg-source: warning: cannot verify inline signature for ./r-cran-bio3d_2.4-5-1.dsc: no acceptable signature found 172s autopkgtest [22:53:13]: testing package r-cran-bio3d version 2.4-5-1 172s autopkgtest [22:53:13]: build not needed 174s autopkgtest [22:53:15]: test run-unit-test: preparing testbed 174s Reading package lists... 174s Building dependency tree... 174s Reading state information... 174s Solving dependencies... 175s The following NEW packages will be installed: 175s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 175s fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax 175s javascript-common libamd3 libasan8 libblas3 libboost-dev libboost1.90-dev 175s libc-dev-bin libc6-dev libcairo2 libcolamd3 libcrypt-dev libdatrie1 175s libdeflate0 libfontconfig1 libgcc-15-dev libgfortran5 libglpk40 libgomp1 175s libgraphite2-3 libharfbuzz0b libhdf5-310 libhdf5-hl-310 libhwasan0 libice6 175s libitm1 libjbig0 libjpeg-turbo8 libjpeg8 libjs-bootstrap libjs-bootstrap4 175s libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery 175s libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json 175s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 175s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker liblapack3 175s liblerc4 liblsan0 libltdl7 liblua5.4-0 libnetcdf22 libpango-1.0-0 175s libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libpixman-1-0 175s libsharpyuv0 libsm6 libstdc++-15-dev libsuitesparseconfig7 libsz2 libtcl8.6 175s libthai-data libthai0 libtiff6 libtk8.6 libtsan2 libubsan1 libwebp7 175s libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64 175s linux-libc-dev node-bootstrap-sass node-html5shiv node-normalize.css pandoc 175s pandoc-data r-base-core r-bioc-biocgenerics r-bioc-biostrings 175s r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-iranges r-bioc-s4vectors 175s r-bioc-ucsc.utils r-bioc-xvector r-bioc-zlibbioc r-cran-askpass 175s r-cran-base64enc r-cran-bh r-cran-bigmemory r-cran-bigmemory.sri 175s r-cran-bio3d r-cran-bitops r-cran-brio r-cran-bslib r-cran-cachem 175s r-cran-callr r-cran-cli r-cran-commonmark r-cran-cpp11 r-cran-crayon 175s r-cran-curl r-cran-desc r-cran-diffobj r-cran-digest r-cran-evaluate 175s r-cran-fastmap r-cran-fontawesome r-cran-fs r-cran-glue r-cran-highr 175s r-cran-htmltools r-cran-httpuv r-cran-httr r-cran-igraph r-cran-jquerylib 175s r-cran-jsonlite r-cran-knitr r-cran-later r-cran-lattice r-cran-lifecycle 175s r-cran-littler r-cran-magrittr r-cran-matrix r-cran-memoise r-cran-mime 175s r-cran-ncdf4 r-cran-openssl r-cran-pkgbuild r-cran-pkgconfig 175s r-cran-pkgkitten r-cran-pkgload r-cran-praise r-cran-processx 175s r-cran-promises r-cran-ps r-cran-r6 r-cran-rappdirs r-cran-rcpp r-cran-rcurl 175s r-cran-rlang r-cran-rmarkdown r-cran-rprojroot r-cran-sass r-cran-shiny 175s r-cran-sourcetools r-cran-sys r-cran-testthat r-cran-tinytex r-cran-uuid 175s r-cran-vctrs r-cran-waldo r-cran-withr r-cran-xfun r-cran-xml r-cran-xtable 175s r-cran-yaml rpcsvc-proto unzip x11-common xdg-utils zip zlib1g-dev 175s 0 upgraded, 176 newly installed, 0 to remove and 0 not upgraded. 175s Need to get 195 MB of archives. 175s After this operation, 760 MB of additional disk space will be used. 175s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-mono all 2.37-8build1 [502 kB] 175s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-core all 2.37-8build1 [834 kB] 176s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 fontconfig-config arm64 2.17.1-3ubuntu1 [38.5 kB] 176s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 libfontconfig1 arm64 2.17.1-3ubuntu1 [144 kB] 176s Get:5 http://ftpmaster.internal/ubuntu resolute/main arm64 fontconfig arm64 2.17.1-3ubuntu1 [181 kB] 176s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1build1 [531 kB] 177s Get:7 http://ftpmaster.internal/ubuntu resolute/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-6 [119 kB] 177s Get:8 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-mathjax all 2.7.9+dfsg-1build1 [2283 kB] 180s Get:9 http://ftpmaster.internal/ubuntu resolute/main arm64 javascript-common all 12+nmu1build1 [4864 B] 180s Get:10 http://ftpmaster.internal/ubuntu resolute/main arm64 libgomp1 arm64 15.2.0-12ubuntu1 [147 kB] 180s Get:11 http://ftpmaster.internal/ubuntu resolute/main arm64 libsuitesparseconfig7 arm64 1:7.12.1+dfsg-1 [22.0 kB] 180s Get:12 http://ftpmaster.internal/ubuntu resolute/universe arm64 libamd3 arm64 1:7.12.1+dfsg-1 [34.6 kB] 180s Get:13 http://ftpmaster.internal/ubuntu resolute/main arm64 libasan8 arm64 15.2.0-12ubuntu1 [2920 kB] 185s Get:14 http://ftpmaster.internal/ubuntu resolute/main arm64 libblas3 arm64 3.12.1-7ubuntu1 [181 kB] 185s Get:15 http://ftpmaster.internal/ubuntu resolute/main arm64 libitm1 arm64 15.2.0-12ubuntu1 [27.8 kB] 185s Get:16 http://ftpmaster.internal/ubuntu resolute/main arm64 liblsan0 arm64 15.2.0-12ubuntu1 [1316 kB] 187s Get:17 http://ftpmaster.internal/ubuntu resolute/main arm64 libtsan2 arm64 15.2.0-12ubuntu1 [2688 kB] 191s Get:18 http://ftpmaster.internal/ubuntu resolute/main arm64 libubsan1 arm64 15.2.0-12ubuntu1 [1175 kB] 193s Get:19 http://ftpmaster.internal/ubuntu resolute/main arm64 libhwasan0 arm64 15.2.0-12ubuntu1 [1638 kB] 195s Get:20 http://ftpmaster.internal/ubuntu resolute/main arm64 libgcc-15-dev arm64 15.2.0-12ubuntu1 [2600 kB] 199s Get:21 http://ftpmaster.internal/ubuntu resolute/main arm64 libc-dev-bin arm64 2.42-2ubuntu4 [22.5 kB] 199s Get:22 http://ftpmaster.internal/ubuntu resolute/main arm64 linux-libc-dev arm64 6.19.0-3.3 [1819 kB] 202s Get:23 http://ftpmaster.internal/ubuntu resolute/main arm64 libcrypt-dev arm64 1:4.5.1-1 [123 kB] 202s Get:24 http://ftpmaster.internal/ubuntu resolute/main arm64 rpcsvc-proto arm64 1.4.3-1build1 [65.6 kB] 202s Get:25 http://ftpmaster.internal/ubuntu resolute/main arm64 libc6-dev arm64 2.42-2ubuntu4 [1765 kB] 205s Get:26 http://ftpmaster.internal/ubuntu resolute/main arm64 libstdc++-15-dev arm64 15.2.0-12ubuntu1 [2549 kB] 210s Get:27 http://ftpmaster.internal/ubuntu resolute/main arm64 libboost1.90-dev arm64 1.90.0-2ubuntu1 [11.5 MB] 227s Get:28 http://ftpmaster.internal/ubuntu resolute/main arm64 libboost-dev arm64 1.90.0.0ubuntu3 [4764 B] 227s Get:29 http://ftpmaster.internal/ubuntu resolute/main arm64 libpixman-1-0 arm64 0.46.4-1 [204 kB] 227s Get:30 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-render0 arm64 1.17.0-2ubuntu1 [16.4 kB] 227s Get:31 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-shm0 arm64 1.17.0-2ubuntu1 [5938 B] 227s Get:32 http://ftpmaster.internal/ubuntu resolute/main arm64 libxrender1 arm64 1:0.9.12-1 [19.5 kB] 227s Get:33 http://ftpmaster.internal/ubuntu resolute/main arm64 libcairo2 arm64 1.18.4-3 [556 kB] 228s Get:34 http://ftpmaster.internal/ubuntu resolute/main arm64 libcolamd3 arm64 1:7.12.1+dfsg-1 [27.1 kB] 228s Get:35 http://ftpmaster.internal/ubuntu resolute/main arm64 libdatrie1 arm64 0.2.14-1 [19.6 kB] 228s Get:36 http://ftpmaster.internal/ubuntu resolute/main arm64 libdeflate0 arm64 1.23-2build1 [46.8 kB] 228s Get:37 http://ftpmaster.internal/ubuntu resolute/main arm64 libgfortran5 arm64 15.2.0-12ubuntu1 [451 kB] 228s Get:38 http://ftpmaster.internal/ubuntu resolute/main arm64 libltdl7 arm64 2.5.4-9 [43.3 kB] 228s Get:39 http://ftpmaster.internal/ubuntu resolute/universe arm64 libglpk40 arm64 5.0-2 [347 kB] 229s Get:40 http://ftpmaster.internal/ubuntu resolute/main arm64 libgraphite2-3 arm64 1.3.14-11ubuntu1 [72.1 kB] 229s Get:41 http://ftpmaster.internal/ubuntu resolute/main arm64 libharfbuzz0b arm64 12.3.2-1 [510 kB] 229s Get:42 http://ftpmaster.internal/ubuntu resolute/universe arm64 libsz2 arm64 1.1.5-1 [17.0 kB] 229s Get:43 http://ftpmaster.internal/ubuntu resolute/universe arm64 libhdf5-310 arm64 1.14.6+repack-2 [1287 kB] 231s Get:44 http://ftpmaster.internal/ubuntu resolute/universe arm64 libhdf5-hl-310 arm64 1.14.6+repack-2 [59.1 kB] 231s Get:45 http://ftpmaster.internal/ubuntu resolute/main arm64 x11-common all 1:7.7+24ubuntu1 [22.4 kB] 231s Get:46 http://ftpmaster.internal/ubuntu resolute/main arm64 libice6 arm64 2:1.1.1-1build1 [43.0 kB] 231s Get:47 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg-turbo8 arm64 2.1.5-4ubuntu3 [161 kB] 231s Get:48 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 231s Get:49 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-bootstrap all 3.4.1+dfsg-6 [129 kB] 231s Get:50 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-popper.js all 1.16.1+ds-6build1 [53.8 kB] 231s Get:51 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-bootstrap4 all 4.6.2+dfsg-1 [532 kB] 232s Get:52 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-d3 all 3.5.17-4build1 [136 kB] 232s Get:53 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 232s Get:54 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-highlight.js all 10.7.3+dfsg-2 [144 kB] 232s Get:55 http://ftpmaster.internal/ubuntu resolute/main arm64 libjs-jquery all 3.7.1+dfsg+~3.5.33-1build1 [321 kB] 232s Get:56 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2build1 [145 kB] 232s Get:57 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 232s Get:58 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-2 [3946 B] 232s Get:59 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 232s Get:60 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1build1 [251 kB] 232s Get:61 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-json all 0~20221030+~1.0.8-1build1 [20.6 kB] 232s Get:62 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-prettify all 2015.12.04+dfsg-3 [41.4 kB] 232s Get:63 http://ftpmaster.internal/ubuntu resolute/main arm64 liblapack3 arm64 3.12.1-7ubuntu1 [2299 kB] 236s Get:64 http://ftpmaster.internal/ubuntu resolute/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu2 [174 kB] 236s Get:65 http://ftpmaster.internal/ubuntu resolute/main arm64 liblua5.4-0 arm64 5.4.8-1 [171 kB] 236s Get:66 http://ftpmaster.internal/ubuntu resolute/universe arm64 libnetcdf22 arm64 1:4.9.3-1build1 [555 kB] 236s Get:67 http://ftpmaster.internal/ubuntu resolute/main arm64 libthai-data all 0.1.30-1 [155 kB] 236s Get:68 http://ftpmaster.internal/ubuntu resolute/main arm64 libthai0 arm64 0.1.30-1 [18.3 kB] 236s Get:69 http://ftpmaster.internal/ubuntu resolute/main arm64 libpango-1.0-0 arm64 1.57.0-1 [238 kB] 236s Get:70 http://ftpmaster.internal/ubuntu resolute/main arm64 libpangoft2-1.0-0 arm64 1.57.0-1 [51.5 kB] 236s Get:71 http://ftpmaster.internal/ubuntu resolute/main arm64 libpangocairo-1.0-0 arm64 1.57.0-1 [27.9 kB] 236s Get:72 http://ftpmaster.internal/ubuntu resolute/main arm64 libpaper2 arm64 2.2.5-0.3build1 [17.3 kB] 236s Get:73 http://ftpmaster.internal/ubuntu resolute/main arm64 libpaper-utils arm64 2.2.5-0.3build1 [15.4 kB] 236s Get:74 http://ftpmaster.internal/ubuntu resolute/main arm64 libsharpyuv0 arm64 1.5.0-0.1build1 [16.7 kB] 236s Get:75 http://ftpmaster.internal/ubuntu resolute/main arm64 libsm6 arm64 2:1.2.6-1build1 [16.8 kB] 236s Get:76 http://ftpmaster.internal/ubuntu resolute/main arm64 libtcl8.6 arm64 8.6.17+dfsg-1build1 [983 kB] 238s Get:77 http://ftpmaster.internal/ubuntu resolute/main arm64 libjbig0 arm64 2.1-6.1ubuntu3 [29.2 kB] 238s Get:78 http://ftpmaster.internal/ubuntu resolute/main arm64 libwebp7 arm64 1.5.0-0.1build1 [205 kB] 238s Get:79 http://ftpmaster.internal/ubuntu resolute/main arm64 libtiff6 arm64 4.7.0-3ubuntu3 [196 kB] 238s Get:80 http://ftpmaster.internal/ubuntu resolute/main arm64 libxft2 arm64 2.3.6-1build2 [43.2 kB] 238s Get:81 http://ftpmaster.internal/ubuntu resolute/main arm64 libxss1 arm64 1:1.2.3-1build4 [7102 B] 238s Get:82 http://ftpmaster.internal/ubuntu resolute/main arm64 libtk8.6 arm64 8.6.17-1 [811 kB] 239s Get:83 http://ftpmaster.internal/ubuntu resolute/main arm64 libxt6t64 arm64 1:1.2.1-1.3 [168 kB] 239s Get:84 http://ftpmaster.internal/ubuntu resolute/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 239s Get:85 http://ftpmaster.internal/ubuntu resolute/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 239s Get:86 http://ftpmaster.internal/ubuntu resolute/universe arm64 node-normalize.css all 8.0.1-5.1 [10.4 kB] 239s Get:87 http://ftpmaster.internal/ubuntu resolute/universe arm64 pandoc-data all 3.1.11.1-3build1 [78.8 kB] 239s Get:88 http://ftpmaster.internal/ubuntu resolute/universe arm64 pandoc arm64 3.1.11.1+ds-4 [28.0 MB] 283s Get:89 http://ftpmaster.internal/ubuntu resolute/main arm64 zip arm64 3.0-15ubuntu3 [170 kB] 283s Get:90 http://ftpmaster.internal/ubuntu resolute/main arm64 unzip arm64 6.0-29ubuntu1 [176 kB] 283s Get:91 http://ftpmaster.internal/ubuntu resolute/main arm64 xdg-utils all 1.2.1-2ubuntu2 [66.1 kB] 283s Get:92 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-base-core arm64 4.5.2-1ubuntu2 [28.6 MB] 326s Get:93 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-biocgenerics all 0.52.0-2 [624 kB] 327s Get:94 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-s4vectors arm64 0.44.0+dfsg-2 [2054 kB] 330s Get:95 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-iranges arm64 2.40.1-3 [2301 kB] 335s Get:96 http://ftpmaster.internal/ubuntu resolute/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu2 [899 kB] 336s Get:97 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB] 336s Get:98 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-xvector arm64 0.46.0-2 [618 kB] 337s Get:99 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-curl arm64 7.0.0+dfsg-1 [202 kB] 337s Get:100 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-jsonlite arm64 1.9.1+dfsg-1 [445 kB] 337s Get:101 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-mime arm64 0.12-2 [35.8 kB] 337s Get:102 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-sys arm64 3.4.3-1 [45.2 kB] 337s Get:103 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-askpass arm64 1.2.1-1 [24.8 kB] 337s Get:104 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-openssl arm64 2.3.2+dfsg-1 [406 kB] 337s Get:105 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-r6 all 2.6.1-1 [101 kB] 337s Get:106 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 337s Get:107 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-ucsc.utils all 1.2.0+ds-2 [77.2 kB] 337s Get:108 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB] 356s Get:109 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-genomeinfodb all 1.42.3+dfsg-1 [3887 kB] 361s Get:110 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-crayon all 1.5.3-1 [165 kB] 361s Get:111 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-biostrings arm64 2.74.1+dfsg-2 [13.3 MB] 391s Get:112 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-base64enc arm64 0.1-3-3build1 [28.5 kB] 391s Get:113 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-bh all 1.84.0-1 [5962 B] 391s Get:114 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-bigmemory.sri all 0.1.8-1 [13.4 kB] 391s Get:115 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-littler arm64 0.3.22-1 [85.1 kB] 391s Get:116 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 391s Get:117 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rcpp arm64 1.1.0-1 [2011 kB] 394s Get:118 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-uuid arm64 1.2-1-1 [48.7 kB] 394s Get:119 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-bigmemory arm64 4.6.4-2 [458 kB] 395s Get:120 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-bio3d arm64 2.4-5-1 [3013 kB] 399s Get:121 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-bitops arm64 1.0-9-1 [30.2 kB] 399s Get:122 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-brio arm64 1.1.5-1 [39.1 kB] 399s Get:123 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rlang arm64 1.1.5-3 [1706 kB] 401s Get:124 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-fastmap arm64 1.2.0-1 [70.6 kB] 401s Get:125 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-cachem arm64 1.1.0-1 [74.1 kB] 401s Get:126 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-digest arm64 0.6.39-1 [196 kB] 401s Get:127 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-htmltools arm64 0.5.8.1-1 [373 kB] 401s Get:128 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-5 [13.7 kB] 401s Get:129 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-cli arm64 3.6.4-1 [1374 kB] 404s Get:130 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-lifecycle all 1.0.5+dfsg-1 [120 kB] 404s Get:131 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-memoise all 2.0.1-1build1 [54.5 kB] 404s Get:132 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-fs arm64 1.6.5+dfsg-1 [244 kB] 404s Get:133 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rappdirs arm64 0.3.3-1build1 [49.5 kB] 404s Get:134 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-sass arm64 0.4.9+dfsg-1 [957 kB] 405s Get:135 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-bslib all 0.9.0+dfsg-3build1 [4560 kB] 413s Get:136 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-ps arm64 1.9.0-1 [407 kB] 413s Get:137 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-processx arm64 3.8.6-1 [363 kB] 413s Get:138 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-callr all 3.7.6-1 [458 kB] 413s Get:139 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-commonmark arm64 1.9.5-1 [130 kB] 413s Get:140 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-cpp11 all 0.5.3-1 [242 kB] 413s Get:141 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-desc all 1.4.3-1 [359 kB] 413s Get:142 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-diffobj arm64 0.3.5-1build1 [1154 kB] 415s Get:143 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-evaluate all 1.0.5-1 [117 kB] 415s Get:144 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-fontawesome all 0.5.3-1 [1331 kB] 417s Get:145 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-glue arm64 1.8.0-1 [163 kB] 417s Get:146 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-xfun arm64 0.55+dfsg-1 [587 kB] 418s Get:147 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 418s Get:148 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-later arm64 1.4.1+dfsg-1 [141 kB] 418s Get:149 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 418s Get:150 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-promises arm64 1.3.2+dfsg-1 [290 kB] 418s Get:151 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-httpuv arm64 1.6.15+dfsg-1 [489 kB] 418s Get:152 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 r-cran-lattice arm64 0.22-9-1 [1399 kB] 420s Get:153 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-matrix arm64 1.7-4-1 [4146 kB] 426s Get:154 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-pkgconfig all 2.0.3-2build2 [20.4 kB] 426s Get:155 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 428s Get:156 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-igraph arm64 2.1.4-1build1 [5151 kB] 436s Get:157 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-yaml arm64 2.3.10-1 [108 kB] 436s Get:158 http://ftpmaster.internal/ubuntu resolute/main arm64 libjs-mathjax all 2.7.9+dfsg-1build1 [6017 kB] 445s Get:159 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-knitr all 1.51+dfsg-1 [847 kB] 446s Get:160 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-ncdf4 arm64 1.23-1build1 [277 kB] 447s Get:161 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-pkgbuild all 1.4.8-1 [219 kB] 447s Get:162 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rprojroot all 2.1.1-1 [131 kB] 447s Get:163 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-pkgload all 1.4.1-1 [252 kB] 448s Get:164 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-praise all 1.0.0-4build2 [20.9 kB] 448s Get:165 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rcurl arm64 1.98-1.16+dfsg-1 [806 kB] 449s Get:166 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-tinytex all 0.58-1 [148 kB] 449s Get:167 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-modernizr all 3.13.0-0.1build1 [100 kB] 449s Get:168 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-xtable all 1:1.8-4-2build1 [691 kB] 450s Get:169 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 450s Get:170 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 450s Get:171 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 451s Get:172 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB] 456s Get:173 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rmarkdown all 2.30+dfsg-1 [1501 kB] 458s Get:174 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-waldo all 0.6.2-1 [153 kB] 458s Get:175 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-testthat arm64 3.2.3-1 [1644 kB] 461s Get:176 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-xml arm64 3.99-0.20-1 [1749 kB] 464s Preconfiguring packages ... 464s Fetched 195 MB in 4min 48s (677 kB/s) 464s Selecting previously unselected package fonts-dejavu-mono. 464s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 136600 files and directories currently installed.) 464s Preparing to unpack .../000-fonts-dejavu-mono_2.37-8build1_all.deb ... 464s Unpacking fonts-dejavu-mono (2.37-8build1) ... 464s Selecting previously unselected package fonts-dejavu-core. 464s Preparing to unpack .../001-fonts-dejavu-core_2.37-8build1_all.deb ... 464s Unpacking fonts-dejavu-core (2.37-8build1) ... 464s Selecting previously unselected package fontconfig-config. 464s Preparing to unpack .../002-fontconfig-config_2.17.1-3ubuntu1_arm64.deb ... 464s Unpacking fontconfig-config (2.17.1-3ubuntu1) ... 464s Selecting previously unselected package libfontconfig1:arm64. 464s Preparing to unpack .../003-libfontconfig1_2.17.1-3ubuntu1_arm64.deb ... 464s Unpacking libfontconfig1:arm64 (2.17.1-3ubuntu1) ... 464s Selecting previously unselected package fontconfig. 464s Preparing to unpack .../004-fontconfig_2.17.1-3ubuntu1_arm64.deb ... 464s Unpacking fontconfig (2.17.1-3ubuntu1) ... 464s Selecting previously unselected package fonts-font-awesome. 464s Preparing to unpack .../005-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1build1_all.deb ... 464s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1build1) ... 464s Selecting previously unselected package fonts-glyphicons-halflings. 464s Preparing to unpack .../006-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-6_all.deb ... 464s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-6) ... 464s Selecting previously unselected package fonts-mathjax. 464s Preparing to unpack .../007-fonts-mathjax_2.7.9+dfsg-1build1_all.deb ... 464s Unpacking fonts-mathjax (2.7.9+dfsg-1build1) ... 465s Selecting previously unselected package javascript-common. 465s Preparing to unpack .../008-javascript-common_12+nmu1build1_all.deb ... 465s Unpacking javascript-common (12+nmu1build1) ... 465s Selecting previously unselected package libgomp1:arm64. 465s Preparing to unpack .../009-libgomp1_15.2.0-12ubuntu1_arm64.deb ... 465s Unpacking libgomp1:arm64 (15.2.0-12ubuntu1) ... 465s Selecting previously unselected package libsuitesparseconfig7:arm64. 465s Preparing to unpack .../010-libsuitesparseconfig7_1%3a7.12.1+dfsg-1_arm64.deb ... 465s Unpacking libsuitesparseconfig7:arm64 (1:7.12.1+dfsg-1) ... 465s Selecting previously unselected package libamd3:arm64. 465s Preparing to unpack .../011-libamd3_1%3a7.12.1+dfsg-1_arm64.deb ... 465s Unpacking libamd3:arm64 (1:7.12.1+dfsg-1) ... 465s Selecting previously unselected package libasan8:arm64. 465s Preparing to unpack .../012-libasan8_15.2.0-12ubuntu1_arm64.deb ... 465s Unpacking libasan8:arm64 (15.2.0-12ubuntu1) ... 465s Selecting previously unselected package libblas3:arm64. 465s Preparing to unpack .../013-libblas3_3.12.1-7ubuntu1_arm64.deb ... 465s Unpacking libblas3:arm64 (3.12.1-7ubuntu1) ... 465s Selecting previously unselected package libitm1:arm64. 465s Preparing to unpack .../014-libitm1_15.2.0-12ubuntu1_arm64.deb ... 465s Unpacking libitm1:arm64 (15.2.0-12ubuntu1) ... 465s Selecting previously unselected package liblsan0:arm64. 465s Preparing to unpack .../015-liblsan0_15.2.0-12ubuntu1_arm64.deb ... 465s Unpacking liblsan0:arm64 (15.2.0-12ubuntu1) ... 465s Selecting previously unselected package libtsan2:arm64. 465s Preparing to unpack .../016-libtsan2_15.2.0-12ubuntu1_arm64.deb ... 465s Unpacking libtsan2:arm64 (15.2.0-12ubuntu1) ... 465s Selecting previously unselected package libubsan1:arm64. 465s Preparing to unpack .../017-libubsan1_15.2.0-12ubuntu1_arm64.deb ... 465s Unpacking libubsan1:arm64 (15.2.0-12ubuntu1) ... 465s Selecting previously unselected package libhwasan0:arm64. 465s Preparing to unpack .../018-libhwasan0_15.2.0-12ubuntu1_arm64.deb ... 465s Unpacking libhwasan0:arm64 (15.2.0-12ubuntu1) ... 465s Selecting previously unselected package libgcc-15-dev:arm64. 465s Preparing to unpack .../019-libgcc-15-dev_15.2.0-12ubuntu1_arm64.deb ... 465s Unpacking libgcc-15-dev:arm64 (15.2.0-12ubuntu1) ... 465s Selecting previously unselected package libc-dev-bin. 465s Preparing to unpack .../020-libc-dev-bin_2.42-2ubuntu4_arm64.deb ... 465s Unpacking libc-dev-bin (2.42-2ubuntu4) ... 465s Selecting previously unselected package linux-libc-dev:arm64. 465s Preparing to unpack .../021-linux-libc-dev_6.19.0-3.3_arm64.deb ... 465s Unpacking linux-libc-dev:arm64 (6.19.0-3.3) ... 465s Selecting previously unselected package libcrypt-dev:arm64. 465s Preparing to unpack .../022-libcrypt-dev_1%3a4.5.1-1_arm64.deb ... 465s Unpacking libcrypt-dev:arm64 (1:4.5.1-1) ... 466s Selecting previously unselected package rpcsvc-proto. 466s Preparing to unpack .../023-rpcsvc-proto_1.4.3-1build1_arm64.deb ... 466s Unpacking rpcsvc-proto (1.4.3-1build1) ... 466s Selecting previously unselected package libc6-dev:arm64. 466s Preparing to unpack .../024-libc6-dev_2.42-2ubuntu4_arm64.deb ... 466s Unpacking libc6-dev:arm64 (2.42-2ubuntu4) ... 466s Selecting previously unselected package libstdc++-15-dev:arm64. 466s Preparing to unpack .../025-libstdc++-15-dev_15.2.0-12ubuntu1_arm64.deb ... 466s Unpacking libstdc++-15-dev:arm64 (15.2.0-12ubuntu1) ... 466s Selecting previously unselected package libboost1.90-dev:arm64. 466s Preparing to unpack .../026-libboost1.90-dev_1.90.0-2ubuntu1_arm64.deb ... 466s Unpacking libboost1.90-dev:arm64 (1.90.0-2ubuntu1) ... 467s Selecting previously unselected package libboost-dev:arm64. 467s Preparing to unpack .../027-libboost-dev_1.90.0.0ubuntu3_arm64.deb ... 467s Unpacking libboost-dev:arm64 (1.90.0.0ubuntu3) ... 467s Selecting previously unselected package libpixman-1-0:arm64. 467s Preparing to unpack .../028-libpixman-1-0_0.46.4-1_arm64.deb ... 467s Unpacking libpixman-1-0:arm64 (0.46.4-1) ... 467s Selecting previously unselected package libxcb-render0:arm64. 467s Preparing to unpack .../029-libxcb-render0_1.17.0-2ubuntu1_arm64.deb ... 467s Unpacking libxcb-render0:arm64 (1.17.0-2ubuntu1) ... 467s Selecting previously unselected package libxcb-shm0:arm64. 467s Preparing to unpack .../030-libxcb-shm0_1.17.0-2ubuntu1_arm64.deb ... 467s Unpacking libxcb-shm0:arm64 (1.17.0-2ubuntu1) ... 467s Selecting previously unselected package libxrender1:arm64. 467s Preparing to unpack .../031-libxrender1_1%3a0.9.12-1_arm64.deb ... 467s Unpacking libxrender1:arm64 (1:0.9.12-1) ... 467s Selecting previously unselected package libcairo2:arm64. 467s Preparing to unpack .../032-libcairo2_1.18.4-3_arm64.deb ... 467s Unpacking libcairo2:arm64 (1.18.4-3) ... 468s Selecting previously unselected package libcolamd3:arm64. 468s Preparing to unpack .../033-libcolamd3_1%3a7.12.1+dfsg-1_arm64.deb ... 468s Unpacking libcolamd3:arm64 (1:7.12.1+dfsg-1) ... 468s Selecting previously unselected package libdatrie1:arm64. 468s Preparing to unpack .../034-libdatrie1_0.2.14-1_arm64.deb ... 468s Unpacking libdatrie1:arm64 (0.2.14-1) ... 468s Selecting previously unselected package libdeflate0:arm64. 468s Preparing to unpack .../035-libdeflate0_1.23-2build1_arm64.deb ... 468s Unpacking libdeflate0:arm64 (1.23-2build1) ... 468s Selecting previously unselected package libgfortran5:arm64. 468s Preparing to unpack .../036-libgfortran5_15.2.0-12ubuntu1_arm64.deb ... 468s Unpacking libgfortran5:arm64 (15.2.0-12ubuntu1) ... 468s Selecting previously unselected package libltdl7:arm64. 468s Preparing to unpack .../037-libltdl7_2.5.4-9_arm64.deb ... 468s Unpacking libltdl7:arm64 (2.5.4-9) ... 468s Selecting previously unselected package libglpk40:arm64. 468s Preparing to unpack .../038-libglpk40_5.0-2_arm64.deb ... 468s Unpacking libglpk40:arm64 (5.0-2) ... 468s Selecting previously unselected package libgraphite2-3:arm64. 468s Preparing to unpack .../039-libgraphite2-3_1.3.14-11ubuntu1_arm64.deb ... 468s Unpacking libgraphite2-3:arm64 (1.3.14-11ubuntu1) ... 468s Selecting previously unselected package libharfbuzz0b:arm64. 468s Preparing to unpack .../040-libharfbuzz0b_12.3.2-1_arm64.deb ... 468s Unpacking libharfbuzz0b:arm64 (12.3.2-1) ... 468s Selecting previously unselected package libsz2:arm64. 468s Preparing to unpack .../041-libsz2_1.1.5-1_arm64.deb ... 468s Unpacking libsz2:arm64 (1.1.5-1) ... 468s Selecting previously unselected package libhdf5-310:arm64. 468s Preparing to unpack .../042-libhdf5-310_1.14.6+repack-2_arm64.deb ... 468s Unpacking libhdf5-310:arm64 (1.14.6+repack-2) ... 468s Selecting previously unselected package libhdf5-hl-310:arm64. 468s Preparing to unpack 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unselected package libjs-jquery. 469s Preparing to unpack .../054-libjs-jquery_3.7.1+dfsg+~3.5.33-1build1_all.deb ... 469s Unpacking libjs-jquery (3.7.1+dfsg+~3.5.33-1build1) ... 469s Selecting previously unselected package libjs-jquery-datatables. 469s Preparing to unpack .../055-libjs-jquery-datatables_1.11.5+dfsg-2build1_all.deb ... 469s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2build1) ... 469s Selecting previously unselected package libjs-sifter.js. 469s Preparing to unpack .../056-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 469s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 469s Selecting previously unselected package libjs-microplugin.js. 469s Preparing to unpack .../057-libjs-microplugin.js_0.0.3+dfsg-2_all.deb ... 469s Unpacking libjs-microplugin.js (0.0.3+dfsg-2) ... 469s Selecting previously unselected package libjs-jquery-selectize.js. 469s Preparing to unpack .../058-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 469s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 469s Selecting previously unselected package libjs-jquery-ui. 469s Preparing to unpack .../059-libjs-jquery-ui_1.13.2+dfsg-1build1_all.deb ... 469s Unpacking libjs-jquery-ui (1.13.2+dfsg-1build1) ... 469s Selecting previously unselected package libjs-json. 469s Preparing to unpack .../060-libjs-json_0~20221030+~1.0.8-1build1_all.deb ... 469s Unpacking libjs-json (0~20221030+~1.0.8-1build1) ... 469s Selecting previously unselected package libjs-prettify. 469s Preparing to unpack .../061-libjs-prettify_2015.12.04+dfsg-3_all.deb ... 469s Unpacking libjs-prettify (2015.12.04+dfsg-3) ... 469s Selecting previously unselected package liblapack3:arm64. 469s Preparing to unpack .../062-liblapack3_3.12.1-7ubuntu1_arm64.deb ... 469s Unpacking liblapack3:arm64 (3.12.1-7ubuntu1) ... 469s Selecting previously unselected package liblerc4:arm64. 469s Preparing to unpack .../063-liblerc4_4.0.0+ds-5ubuntu2_arm64.deb ... 469s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu2) ... 469s Selecting previously unselected package liblua5.4-0:arm64. 469s Preparing to unpack .../064-liblua5.4-0_5.4.8-1_arm64.deb ... 469s Unpacking liblua5.4-0:arm64 (5.4.8-1) ... 469s Selecting previously unselected package libnetcdf22:arm64. 469s Preparing to unpack .../065-libnetcdf22_1%3a4.9.3-1build1_arm64.deb ... 469s Unpacking libnetcdf22:arm64 (1:4.9.3-1build1) ... 469s Selecting previously unselected package libthai-data. 469s Preparing to unpack .../066-libthai-data_0.1.30-1_all.deb ... 469s Unpacking libthai-data (0.1.30-1) ... 469s Selecting previously unselected package libthai0:arm64. 469s Preparing to unpack .../067-libthai0_0.1.30-1_arm64.deb ... 469s Unpacking libthai0:arm64 (0.1.30-1) ... 469s Selecting previously unselected package libpango-1.0-0:arm64. 469s Preparing to unpack .../068-libpango-1.0-0_1.57.0-1_arm64.deb ... 469s Unpacking libpango-1.0-0:arm64 (1.57.0-1) ... 469s Selecting previously unselected package libpangoft2-1.0-0:arm64. 469s Preparing to unpack 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.../074-libsm6_2%3a1.2.6-1build1_arm64.deb ... 470s Unpacking libsm6:arm64 (2:1.2.6-1build1) ... 470s Selecting previously unselected package libtcl8.6:arm64. 470s Preparing to unpack .../075-libtcl8.6_8.6.17+dfsg-1build1_arm64.deb ... 470s Unpacking libtcl8.6:arm64 (8.6.17+dfsg-1build1) ... 470s Selecting previously unselected package libjbig0:arm64. 470s Preparing to unpack .../076-libjbig0_2.1-6.1ubuntu3_arm64.deb ... 470s Unpacking libjbig0:arm64 (2.1-6.1ubuntu3) ... 470s Selecting previously unselected package libwebp7:arm64. 470s Preparing to unpack .../077-libwebp7_1.5.0-0.1build1_arm64.deb ... 470s Unpacking libwebp7:arm64 (1.5.0-0.1build1) ... 470s Selecting previously unselected package libtiff6:arm64. 470s Preparing to unpack .../078-libtiff6_4.7.0-3ubuntu3_arm64.deb ... 470s Unpacking libtiff6:arm64 (4.7.0-3ubuntu3) ... 470s Selecting previously unselected package libxft2:arm64. 470s Preparing to unpack .../079-libxft2_2.3.6-1build2_arm64.deb ... 470s Unpacking libxft2:arm64 (2.3.6-1build2) ... 470s Selecting previously unselected package libxss1:arm64. 470s Preparing to unpack .../080-libxss1_1%3a1.2.3-1build4_arm64.deb ... 470s Unpacking libxss1:arm64 (1:1.2.3-1build4) ... 470s Selecting previously unselected package libtk8.6:arm64. 470s Preparing to unpack .../081-libtk8.6_8.6.17-1_arm64.deb ... 470s Unpacking libtk8.6:arm64 (8.6.17-1) ... 470s Selecting previously unselected package libxt6t64:arm64. 470s Preparing to unpack .../082-libxt6t64_1%3a1.2.1-1.3_arm64.deb ... 470s Unpacking libxt6t64:arm64 (1:1.2.1-1.3) ... 470s Selecting previously unselected package node-bootstrap-sass. 470s Preparing to unpack .../083-node-bootstrap-sass_3.4.3-2_all.deb ... 470s Unpacking node-bootstrap-sass (3.4.3-2) ... 470s Selecting previously unselected package node-html5shiv. 470s Preparing to unpack .../084-node-html5shiv_3.7.3+dfsg-5_all.deb ... 470s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 470s Selecting previously unselected package node-normalize.css. 470s Preparing to unpack .../085-node-normalize.css_8.0.1-5.1_all.deb ... 470s Unpacking node-normalize.css (8.0.1-5.1) ... 470s Selecting previously unselected package pandoc-data. 470s Preparing to unpack .../086-pandoc-data_3.1.11.1-3build1_all.deb ... 470s Unpacking pandoc-data (3.1.11.1-3build1) ... 470s Selecting previously unselected package pandoc. 470s Preparing to unpack .../087-pandoc_3.1.11.1+ds-4_arm64.deb ... 470s Unpacking pandoc (3.1.11.1+ds-4) ... 471s Selecting previously unselected package zip. 471s Preparing to unpack .../088-zip_3.0-15ubuntu3_arm64.deb ... 471s Unpacking zip (3.0-15ubuntu3) ... 471s Selecting previously unselected package unzip. 472s Preparing to unpack .../089-unzip_6.0-29ubuntu1_arm64.deb ... 472s Unpacking unzip (6.0-29ubuntu1) ... 472s Selecting previously unselected package xdg-utils. 472s Preparing to unpack .../090-xdg-utils_1.2.1-2ubuntu2_all.deb ... 472s Unpacking xdg-utils (1.2.1-2ubuntu2) ... 472s Selecting previously unselected package r-base-core. 472s Preparing to unpack .../091-r-base-core_4.5.2-1ubuntu2_arm64.deb ... 472s Unpacking r-base-core (4.5.2-1ubuntu2) ... 472s Selecting previously unselected package r-bioc-biocgenerics. 472s Preparing to unpack .../092-r-bioc-biocgenerics_0.52.0-2_all.deb ... 472s Unpacking r-bioc-biocgenerics (0.52.0-2) ... 472s Selecting previously unselected package r-bioc-s4vectors. 472s Preparing to unpack .../093-r-bioc-s4vectors_0.44.0+dfsg-2_arm64.deb ... 472s Unpacking r-bioc-s4vectors (0.44.0+dfsg-2) ... 472s Selecting previously unselected package r-bioc-iranges. 472s Preparing to unpack .../094-r-bioc-iranges_2.40.1-3_arm64.deb ... 472s Unpacking r-bioc-iranges (2.40.1-3) ... 472s Selecting previously unselected package zlib1g-dev:arm64. 472s Preparing to unpack .../095-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu2_arm64.deb ... 472s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu2) ... 472s Selecting previously unselected package r-bioc-zlibbioc. 472s Preparing to unpack .../096-r-bioc-zlibbioc_1.52.0+dfsg-2_all.deb ... 472s Unpacking r-bioc-zlibbioc (1.52.0+dfsg-2) ... 472s Selecting previously unselected package r-bioc-xvector. 472s Preparing to unpack .../097-r-bioc-xvector_0.46.0-2_arm64.deb ... 472s Unpacking r-bioc-xvector (0.46.0-2) ... 472s Selecting previously unselected package r-cran-curl. 472s Preparing to unpack .../098-r-cran-curl_7.0.0+dfsg-1_arm64.deb ... 472s Unpacking r-cran-curl (7.0.0+dfsg-1) ... 472s Selecting previously unselected package r-cran-jsonlite. 472s Preparing to unpack .../099-r-cran-jsonlite_1.9.1+dfsg-1_arm64.deb ... 472s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ... 472s Selecting previously unselected package r-cran-mime. 472s Preparing to unpack .../100-r-cran-mime_0.12-2_arm64.deb ... 472s Unpacking r-cran-mime (0.12-2) ... 472s Selecting previously unselected package r-cran-sys. 472s Preparing to unpack .../101-r-cran-sys_3.4.3-1_arm64.deb ... 472s Unpacking r-cran-sys (3.4.3-1) ... 473s Selecting previously unselected package r-cran-askpass. 473s Preparing to unpack .../102-r-cran-askpass_1.2.1-1_arm64.deb ... 473s Unpacking r-cran-askpass (1.2.1-1) ... 473s Selecting previously unselected package r-cran-openssl. 473s Preparing to unpack .../103-r-cran-openssl_2.3.2+dfsg-1_arm64.deb ... 473s Unpacking r-cran-openssl (2.3.2+dfsg-1) ... 473s Selecting previously unselected package r-cran-r6. 473s Preparing to unpack .../104-r-cran-r6_2.6.1-1_all.deb ... 473s Unpacking r-cran-r6 (2.6.1-1) ... 473s Selecting previously unselected package r-cran-httr. 473s Preparing to unpack .../105-r-cran-httr_1.4.7+dfsg-1_all.deb ... 473s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 473s Selecting previously unselected package r-bioc-ucsc.utils. 473s Preparing to unpack .../106-r-bioc-ucsc.utils_1.2.0+ds-2_all.deb ... 473s Unpacking r-bioc-ucsc.utils (1.2.0+ds-2) ... 473s Selecting previously unselected package r-bioc-genomeinfodbdata. 473s Preparing to unpack .../107-r-bioc-genomeinfodbdata_1.2.13-2_all.deb ... 473s Unpacking r-bioc-genomeinfodbdata (1.2.13-2) ... 473s Selecting previously unselected package r-bioc-genomeinfodb. 473s Preparing to unpack .../108-r-bioc-genomeinfodb_1.42.3+dfsg-1_all.deb ... 473s Unpacking r-bioc-genomeinfodb (1.42.3+dfsg-1) ... 473s Selecting previously unselected package r-cran-crayon. 473s Preparing to unpack .../109-r-cran-crayon_1.5.3-1_all.deb ... 473s Unpacking r-cran-crayon (1.5.3-1) ... 473s Selecting previously unselected package r-bioc-biostrings. 473s Preparing to unpack .../110-r-bioc-biostrings_2.74.1+dfsg-2_arm64.deb ... 473s Unpacking r-bioc-biostrings (2.74.1+dfsg-2) ... 473s Selecting previously unselected package r-cran-base64enc. 473s Preparing to unpack .../111-r-cran-base64enc_0.1-3-3build1_arm64.deb ... 473s Unpacking r-cran-base64enc (0.1-3-3build1) ... 473s Selecting previously unselected package r-cran-bh. 473s Preparing to unpack .../112-r-cran-bh_1.84.0-1_all.deb ... 473s Unpacking r-cran-bh (1.84.0-1) ... 473s Selecting previously unselected package r-cran-bigmemory.sri. 473s Preparing to unpack .../113-r-cran-bigmemory.sri_0.1.8-1_all.deb ... 473s Unpacking r-cran-bigmemory.sri (0.1.8-1) ... 473s Selecting previously unselected package r-cran-littler. 473s Preparing to unpack .../114-r-cran-littler_0.3.22-1_arm64.deb ... 473s Unpacking r-cran-littler (0.3.22-1) ... 473s Selecting previously unselected package r-cran-pkgkitten. 473s Preparing to unpack .../115-r-cran-pkgkitten_0.2.4-1_all.deb ... 473s Unpacking r-cran-pkgkitten (0.2.4-1) ... 473s Selecting previously unselected package r-cran-rcpp. 473s Preparing to unpack .../116-r-cran-rcpp_1.1.0-1_arm64.deb ... 473s Unpacking r-cran-rcpp (1.1.0-1) ... 474s Selecting previously unselected package r-cran-uuid. 474s Preparing to unpack .../117-r-cran-uuid_1.2-1-1_arm64.deb ... 474s Unpacking r-cran-uuid (1.2-1-1) ... 474s Selecting previously unselected package r-cran-bigmemory. 474s Preparing to unpack .../118-r-cran-bigmemory_4.6.4-2_arm64.deb ... 474s Unpacking r-cran-bigmemory (4.6.4-2) ... 474s Selecting previously unselected package r-cran-bio3d. 474s Preparing to unpack .../119-r-cran-bio3d_2.4-5-1_arm64.deb ... 474s Unpacking r-cran-bio3d (2.4-5-1) ... 474s Selecting previously unselected package r-cran-bitops. 474s Preparing to unpack .../120-r-cran-bitops_1.0-9-1_arm64.deb ... 474s Unpacking r-cran-bitops (1.0-9-1) ... 474s Selecting previously unselected package r-cran-brio. 474s Preparing to unpack .../121-r-cran-brio_1.1.5-1_arm64.deb ... 474s Unpacking r-cran-brio (1.1.5-1) ... 474s Selecting previously unselected package r-cran-rlang. 474s Preparing to unpack .../122-r-cran-rlang_1.1.5-3_arm64.deb ... 474s Unpacking r-cran-rlang (1.1.5-3) ... 474s Selecting previously unselected package r-cran-fastmap. 474s Preparing to unpack .../123-r-cran-fastmap_1.2.0-1_arm64.deb ... 474s Unpacking r-cran-fastmap (1.2.0-1) ... 474s Selecting previously unselected package r-cran-cachem. 474s Preparing to unpack .../124-r-cran-cachem_1.1.0-1_arm64.deb ... 474s Unpacking r-cran-cachem (1.1.0-1) ... 474s Selecting previously unselected package r-cran-digest. 474s Preparing to unpack .../125-r-cran-digest_0.6.39-1_arm64.deb ... 474s Unpacking r-cran-digest (0.6.39-1) ... 474s Selecting previously unselected package r-cran-htmltools. 474s Preparing to unpack .../126-r-cran-htmltools_0.5.8.1-1_arm64.deb ... 474s Unpacking r-cran-htmltools (0.5.8.1-1) ... 474s Selecting previously unselected package r-cran-jquerylib. 474s Preparing to unpack .../127-r-cran-jquerylib_0.1.4+dfsg-5_all.deb ... 474s Unpacking r-cran-jquerylib (0.1.4+dfsg-5) ... 474s Selecting previously unselected package r-cran-cli. 474s Preparing to unpack .../128-r-cran-cli_3.6.4-1_arm64.deb ... 474s Unpacking r-cran-cli (3.6.4-1) ... 474s Selecting previously unselected package r-cran-lifecycle. 474s Preparing to unpack .../129-r-cran-lifecycle_1.0.5+dfsg-1_all.deb ... 474s Unpacking r-cran-lifecycle (1.0.5+dfsg-1) ... 474s Selecting previously unselected package r-cran-memoise. 474s Preparing to unpack .../130-r-cran-memoise_2.0.1-1build1_all.deb ... 474s Unpacking r-cran-memoise (2.0.1-1build1) ... 474s Selecting previously unselected package r-cran-fs. 474s Preparing to unpack .../131-r-cran-fs_1.6.5+dfsg-1_arm64.deb ... 474s Unpacking r-cran-fs (1.6.5+dfsg-1) ... 474s Selecting previously unselected package r-cran-rappdirs. 474s Preparing to unpack .../132-r-cran-rappdirs_0.3.3-1build1_arm64.deb ... 474s Unpacking r-cran-rappdirs (0.3.3-1build1) ... 474s Selecting previously unselected package r-cran-sass. 474s Preparing to unpack .../133-r-cran-sass_0.4.9+dfsg-1_arm64.deb ... 474s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 474s Selecting previously unselected package r-cran-bslib. 475s Preparing to unpack .../134-r-cran-bslib_0.9.0+dfsg-3build1_all.deb ... 475s Unpacking r-cran-bslib (0.9.0+dfsg-3build1) ... 475s Selecting previously unselected package r-cran-ps. 475s Preparing to unpack .../135-r-cran-ps_1.9.0-1_arm64.deb ... 475s Unpacking r-cran-ps (1.9.0-1) ... 475s Selecting previously unselected package r-cran-processx. 475s Preparing to unpack .../136-r-cran-processx_3.8.6-1_arm64.deb ... 475s Unpacking r-cran-processx (3.8.6-1) ... 475s Selecting previously unselected package r-cran-callr. 475s Preparing to unpack .../137-r-cran-callr_3.7.6-1_all.deb ... 475s Unpacking r-cran-callr (3.7.6-1) ... 475s Selecting previously unselected package r-cran-commonmark. 475s Preparing to unpack .../138-r-cran-commonmark_1.9.5-1_arm64.deb ... 475s Unpacking r-cran-commonmark (1.9.5-1) ... 475s Selecting previously unselected package r-cran-cpp11. 475s Preparing to unpack .../139-r-cran-cpp11_0.5.3-1_all.deb ... 475s Unpacking r-cran-cpp11 (0.5.3-1) ... 475s Selecting previously unselected package r-cran-desc. 475s Preparing to unpack .../140-r-cran-desc_1.4.3-1_all.deb ... 475s Unpacking r-cran-desc (1.4.3-1) ... 475s Selecting previously unselected package r-cran-diffobj. 475s Preparing to unpack .../141-r-cran-diffobj_0.3.5-1build1_arm64.deb ... 475s Unpacking r-cran-diffobj (0.3.5-1build1) ... 475s Selecting previously unselected package r-cran-evaluate. 475s Preparing to unpack .../142-r-cran-evaluate_1.0.5-1_all.deb ... 475s Unpacking r-cran-evaluate (1.0.5-1) ... 475s Selecting previously unselected package r-cran-fontawesome. 475s Preparing to unpack .../143-r-cran-fontawesome_0.5.3-1_all.deb ... 475s Unpacking r-cran-fontawesome (0.5.3-1) ... 475s Selecting previously unselected package r-cran-glue. 475s Preparing to unpack .../144-r-cran-glue_1.8.0-1_arm64.deb ... 475s Unpacking r-cran-glue (1.8.0-1) ... 475s Selecting previously unselected package r-cran-xfun. 475s Preparing to unpack .../145-r-cran-xfun_0.55+dfsg-1_arm64.deb ... 475s Unpacking r-cran-xfun (0.55+dfsg-1) ... 475s Selecting previously unselected package r-cran-highr. 475s Preparing to unpack .../146-r-cran-highr_0.11+dfsg-1_all.deb ... 475s Unpacking r-cran-highr (0.11+dfsg-1) ... 475s Selecting previously unselected package r-cran-later. 475s Preparing to unpack .../147-r-cran-later_1.4.1+dfsg-1_arm64.deb ... 475s Unpacking r-cran-later (1.4.1+dfsg-1) ... 475s Selecting previously unselected package r-cran-magrittr. 475s Preparing to unpack .../148-r-cran-magrittr_2.0.3-1_arm64.deb ... 475s Unpacking r-cran-magrittr (2.0.3-1) ... 475s Selecting previously unselected package r-cran-promises. 475s Preparing to unpack .../149-r-cran-promises_1.3.2+dfsg-1_arm64.deb ... 475s Unpacking r-cran-promises (1.3.2+dfsg-1) ... 475s Selecting previously unselected package r-cran-httpuv. 476s Preparing to unpack .../150-r-cran-httpuv_1.6.15+dfsg-1_arm64.deb ... 476s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 476s Selecting previously unselected package r-cran-lattice. 476s Preparing to unpack .../151-r-cran-lattice_0.22-9-1_arm64.deb ... 476s Unpacking r-cran-lattice (0.22-9-1) ... 476s Selecting previously unselected package r-cran-matrix. 476s Preparing to unpack .../152-r-cran-matrix_1.7-4-1_arm64.deb ... 476s Unpacking r-cran-matrix (1.7-4-1) ... 476s Selecting previously unselected package r-cran-pkgconfig. 476s Preparing to unpack .../153-r-cran-pkgconfig_2.0.3-2build2_all.deb ... 476s Unpacking r-cran-pkgconfig (2.0.3-2build2) ... 476s Selecting previously unselected package r-cran-vctrs. 476s Preparing to unpack .../154-r-cran-vctrs_0.6.5-1_arm64.deb ... 476s Unpacking r-cran-vctrs (0.6.5-1) ... 476s Selecting previously unselected package r-cran-igraph. 476s Preparing to unpack .../155-r-cran-igraph_2.1.4-1build1_arm64.deb ... 476s Unpacking r-cran-igraph (2.1.4-1build1) ... 476s Selecting previously unselected package r-cran-yaml. 476s Preparing to unpack .../156-r-cran-yaml_2.3.10-1_arm64.deb ... 476s Unpacking r-cran-yaml (2.3.10-1) ... 476s Selecting previously unselected package libjs-mathjax. 476s Preparing to unpack .../157-libjs-mathjax_2.7.9+dfsg-1build1_all.deb ... 476s Unpacking libjs-mathjax (2.7.9+dfsg-1build1) ... 476s Selecting previously unselected package r-cran-knitr. 476s Preparing to unpack .../158-r-cran-knitr_1.51+dfsg-1_all.deb ... 476s Unpacking r-cran-knitr (1.51+dfsg-1) ... 476s Selecting previously unselected package r-cran-ncdf4. 477s Preparing to unpack .../159-r-cran-ncdf4_1.23-1build1_arm64.deb ... 477s Unpacking r-cran-ncdf4 (1.23-1build1) ... 477s Selecting previously unselected package r-cran-pkgbuild. 477s Preparing to unpack .../160-r-cran-pkgbuild_1.4.8-1_all.deb ... 477s Unpacking r-cran-pkgbuild (1.4.8-1) ... 477s Selecting previously unselected package r-cran-rprojroot. 477s Preparing to unpack .../161-r-cran-rprojroot_2.1.1-1_all.deb ... 477s Unpacking r-cran-rprojroot (2.1.1-1) ... 477s Selecting previously unselected package r-cran-pkgload. 477s Preparing to unpack .../162-r-cran-pkgload_1.4.1-1_all.deb ... 477s Unpacking r-cran-pkgload (1.4.1-1) ... 477s Selecting previously unselected package r-cran-praise. 477s Preparing to unpack .../163-r-cran-praise_1.0.0-4build2_all.deb ... 477s Unpacking r-cran-praise (1.0.0-4build2) ... 477s Selecting previously unselected package r-cran-rcurl. 477s Preparing to unpack .../164-r-cran-rcurl_1.98-1.16+dfsg-1_arm64.deb ... 477s Unpacking r-cran-rcurl (1.98-1.16+dfsg-1) ... 477s Selecting previously unselected package r-cran-tinytex. 477s Preparing to unpack .../165-r-cran-tinytex_0.58-1_all.deb ... 477s Unpacking r-cran-tinytex (0.58-1) ... 477s Selecting previously unselected package libjs-modernizr. 477s Preparing to unpack .../166-libjs-modernizr_3.13.0-0.1build1_all.deb ... 477s Unpacking libjs-modernizr (3.13.0-0.1build1) ... 477s Selecting previously unselected package r-cran-xtable. 477s Preparing to unpack .../167-r-cran-xtable_1%3a1.8-4-2build1_all.deb ... 477s Unpacking r-cran-xtable (1:1.8-4-2build1) ... 477s Selecting previously unselected package r-cran-sourcetools. 477s Preparing to unpack .../168-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 477s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 477s Selecting previously unselected package r-cran-withr. 477s Preparing to unpack .../169-r-cran-withr_3.0.2+dfsg-1_all.deb ... 477s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 477s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 477s Preparing to unpack .../170-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 477s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 477s Selecting previously unselected package r-cran-shiny. 477s Preparing to unpack .../171-r-cran-shiny_1.10.0+dfsg-2_all.deb ... 477s Unpacking r-cran-shiny (1.10.0+dfsg-2) ... 477s Selecting previously unselected package r-cran-rmarkdown. 477s Preparing to unpack .../172-r-cran-rmarkdown_2.30+dfsg-1_all.deb ... 477s Unpacking r-cran-rmarkdown (2.30+dfsg-1) ... 477s Selecting previously unselected package r-cran-waldo. 477s Preparing to unpack .../173-r-cran-waldo_0.6.2-1_all.deb ... 477s Unpacking r-cran-waldo (0.6.2-1) ... 477s 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up libc6-dev:arm64 (2.42-2ubuntu4) ... 479s Setting up libfontconfig1:arm64 (2.17.1-3ubuntu1) ... 479s Setting up libsm6:arm64 (2:1.2.6-1build1) ... 479s Setting up libhdf5-hl-310:arm64 (1.14.6+repack-2) ... 479s Setting up fontconfig (2.17.1-3ubuntu1) ... 481s Regenerating fonts cache... done. 481s Setting up libxft2:arm64 (2.3.6-1build2) ... 481s Setting up libtk8.6:arm64 (8.6.17-1) ... 481s Setting up libpango-1.0-0:arm64 (1.57.0-1) ... 481s Setting up libnetcdf22:arm64 (1:4.9.3-1build1) ... 481s Setting up libcairo2:arm64 (1.18.4-3) ... 481s Setting up libstdc++-15-dev:arm64 (15.2.0-12ubuntu1) ... 481s Setting up libxt6t64:arm64 (1:1.2.1-1.3) ... 481s Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu2) ... 481s Setting up libboost1.90-dev:arm64 (1.90.0-2ubuntu1) ... 481s Setting up libboost-dev:arm64 (1.90.0.0ubuntu3) ... 481s Setting up libpangoft2-1.0-0:arm64 (1.57.0-1) ... 481s Setting up libpangocairo-1.0-0:arm64 (1.57.0-1) ... 481s Setting up r-base-core (4.5.2-1ubuntu2) ... 481s Creating config file /etc/R/Renviron with new version 481s Setting up r-cran-crayon (1.5.3-1) ... 481s Setting up r-cran-sourcetools (0.1.7-1-1) ... 481s Setting up r-cran-lattice (0.22-9-1) ... 481s Setting up r-cran-ps (1.9.0-1) ... 481s Setting up r-cran-xml (3.99-0.20-1) ... 481s Setting up r-cran-commonmark (1.9.5-1) ... 481s Setting up r-cran-r6 (2.6.1-1) ... 481s Setting up r-cran-pkgkitten (0.2.4-1) ... 481s Setting up r-cran-magrittr (2.0.3-1) ... 481s Setting up r-cran-rappdirs (0.3.3-1build1) ... 481s Setting up r-bioc-genomeinfodbdata (1.2.13-2) ... 481s Setting up r-cran-littler (0.3.22-1) ... 481s Setting up r-cran-bh (1.84.0-1) ... 481s Setting up r-cran-ncdf4 (1.23-1build1) ... 481s Setting up r-cran-fs (1.6.5+dfsg-1) ... 481s Setting up r-cran-rcpp (1.1.0-1) ... 481s Setting up r-cran-curl (7.0.0+dfsg-1) ... 481s Setting up r-cran-brio (1.1.5-1) ... 481s Setting up r-cran-diffobj (0.3.5-1build1) ... 481s Setting up r-cran-bigmemory.sri (0.1.8-1) ... 481s Setting up r-bioc-biocgenerics (0.52.0-2) ... 481s Setting up r-cran-rlang (1.1.5-3) ... 481s Setting up r-cran-bio3d (2.4-5-1) ... 481s Setting up r-cran-uuid (1.2-1-1) ... 481s Setting up r-cran-xfun (0.55+dfsg-1) ... 481s Setting up r-cran-sys (3.4.3-1) ... 481s Setting up r-cran-withr (3.0.2+dfsg-1) ... 481s Setting up r-cran-processx (3.8.6-1) ... 481s Setting up r-cran-mime (0.12-2) ... 481s Setting up r-cran-praise (1.0.0-4build2) ... 481s Setting up r-cran-base64enc (0.1-3-3build1) ... 481s Setting up r-cran-digest (0.6.39-1) ... 481s Setting up r-cran-yaml (2.3.10-1) ... 481s Setting up r-cran-evaluate (1.0.5-1) ... 481s Setting up r-cran-bigmemory (4.6.4-2) ... 481s Setting up r-cran-highr (0.11+dfsg-1) ... 481s Setting up r-cran-glue (1.8.0-1) ... 481s Setting up r-cran-xtable (1:1.8-4-2build1) ... 481s Setting up r-cran-cli (3.6.4-1) ... 481s Setting up r-cran-lifecycle (1.0.5+dfsg-1) ... 481s Setting up r-cran-bitops (1.0-9-1) ... 481s Setting up r-cran-rprojroot (2.1.1-1) ... 481s Setting up r-bioc-zlibbioc (1.52.0+dfsg-2) ... 481s Setting up r-cran-askpass (1.2.1-1) ... 481s Setting up r-cran-fastmap (1.2.0-1) ... 481s Setting up r-cran-jsonlite (1.9.1+dfsg-1) ... 481s Setting up r-cran-pkgconfig (2.0.3-2build2) ... 481s Setting up r-cran-cpp11 (0.5.3-1) ... 481s Setting up r-bioc-s4vectors (0.44.0+dfsg-2) ... 481s Setting up r-cran-waldo (0.6.2-1) ... 481s Setting up r-cran-later (1.4.1+dfsg-1) ... 481s Setting up r-cran-matrix (1.7-4-1) ... 481s Setting up r-cran-htmltools (0.5.8.1-1) ... 481s Setting up r-cran-tinytex (0.58-1) ... 481s Setting up r-cran-knitr (1.51+dfsg-1) ... 481s Setting up r-cran-cachem (1.1.0-1) ... 481s Setting up r-cran-sass (0.4.9+dfsg-1) ... 481s Setting up r-bioc-iranges (2.40.1-3) ... 481s Setting up r-cran-rcurl (1.98-1.16+dfsg-1) ... 481s Setting up r-cran-vctrs (0.6.5-1) ... 481s Setting up r-cran-openssl (2.3.2+dfsg-1) ... 481s Setting up r-cran-callr (3.7.6-1) ... 481s Setting up r-cran-desc (1.4.3-1) ... 481s Setting up r-cran-fontawesome (0.5.3-1) ... 481s Setting up r-cran-igraph (2.1.4-1build1) ... 481s Setting up r-cran-jquerylib (0.1.4+dfsg-5) ... 481s Setting up r-cran-httr (1.4.7+dfsg-1) ... 481s Setting up r-cran-memoise (2.0.1-1build1) ... 481s Setting up r-cran-promises (1.3.2+dfsg-1) ... 481s Setting up r-bioc-xvector (0.46.0-2) ... 481s Setting up r-cran-pkgbuild (1.4.8-1) ... 481s Setting up r-cran-pkgload (1.4.1-1) ... 481s Setting up r-bioc-ucsc.utils (1.2.0+ds-2) ... 481s Setting up r-cran-httpuv (1.6.15+dfsg-1) ... 481s Setting up r-cran-testthat (3.2.3-1) ... 481s Setting up r-bioc-genomeinfodb (1.42.3+dfsg-1) ... 481s Setting up r-cran-bslib (0.9.0+dfsg-3build1) ... 481s Setting up r-bioc-biostrings (2.74.1+dfsg-2) ... 481s Setting up r-cran-shiny (1.10.0+dfsg-2) ... 481s Setting up r-cran-rmarkdown (2.30+dfsg-1) ... 481s Processing triggers for libc-bin (2.42-2ubuntu4) ... 481s Processing triggers for man-db (2.13.1-1build1) ... 482s Processing triggers for install-info (7.2-5) ... 483s autopkgtest [22:58:24]: test run-unit-test: [----------------------- 483s BEGIN TEST testthat.R 483s 483s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 483s Copyright (C) 2025 The R Foundation for Statistical Computing 483s Platform: aarch64-unknown-linux-gnu 483s 483s R is free software and comes with ABSOLUTELY NO WARRANTY. 483s You are welcome to redistribute it under certain conditions. 483s Type 'license()' or 'licence()' for distribution details. 483s 483s R is a collaborative project with many contributors. 483s Type 'contributors()' for more information and 483s 'citation()' on how to cite R or R packages in publications. 483s 483s Type 'demo()' for some demos, 'help()' for on-line help, or 483s 'help.start()' for an HTML browser interface to help. 483s Type 'q()' to quit R. 483s 483s > library(testthat) 483s > test_check("bio3d") 483s Loading required package: bio3d 490s [ FAIL 0 | WARN 0 | SKIP 29 | PASS 174 ] 490s 490s == Skipped tests (29) ========================================================== 490s * On CRAN (29): 'test-aanma.R:5:3', 'test-aanma.pdbs.R:10:3', 490s 'test-clean.pdb.R:24:3', 'test-cmap.R:20:3', 'test-cna.R:5:3', 490s 'test-core.find.R:5:3', 'test-dccm.R:27:3', 'test-dccm.R:47:3', 490s 'test-dssp.R:4:3', 'test-fitting.R:64:3', 'test-fitting.R:91:4', 490s 'test-fitting.R:116:4', 'test-get.pdb.R:4:3', 'test-get.pdb.R:24:3', 490s 'test-get.seq.R:4:3', 'test-mol2.R:34:3', 'test-mol2.R:49:3', 490s 'test-mol2.R:82:3', 'test-nma.pdbs.R:5:3', 'test-pdb.annotate.R:5:3', 490s 'test-pdbsplit.R:5:3', 'test-read.all.R:6:3', 'test-read.cif.R:5:3', 490s 'test-read.cif.R:49:3', 'test-read.ncdf.R:4:4', 'test-read.pdb.R:43:3', 490s 'test-read.pdb.R:121:3', 'test-read.pdb.R:141:3', 'test-seqaln.R:5:3' 490s 490s [ FAIL 0 | WARN 0 | SKIP 29 | PASS 174 ] 490s > 490s autopkgtest [22:58:31]: test run-unit-test: -----------------------] 491s run-unit-test PASS 491s autopkgtest [22:58:32]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 491s autopkgtest [22:58:32]: test pkg-r-autopkgtest: preparing testbed 509s Creating nova instance adt-resolute-arm64-r-cran-bio3d-20260209-225021-juju-7f2275-prod-proposed-migration-environment-15-022c8fba-4189-4e2a-9df4-ca7eb3bd14b2 from image adt/ubuntu-resolute-arm64-server-20260209.img (UUID 793037ca-75af-461b-82de-f8081300b2e3)... 622s autopkgtest [23:00:43]: testbed dpkg architecture: arm64 622s autopkgtest [23:00:43]: testbed apt version: 3.1.15 622s autopkgtest [23:00:43]: @@@@@@@@@@@@@@@@@@@@ test bed setup 622s autopkgtest [23:00:43]: testbed release detected to be: resolute 623s autopkgtest [23:00:44]: updating testbed package index (apt update) 623s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 623s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 623s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 623s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 624s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1645 kB] 626s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [29.4 kB] 626s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [176 kB] 626s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 Packages [246 kB] 626s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 c-n-f Metadata [6216 B] 626s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 c-n-f Metadata [304 B] 626s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 Packages [1580 kB] 629s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 c-n-f Metadata [32.0 kB] 629s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 Packages [21.7 kB] 629s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 c-n-f Metadata [688 B] 630s Fetched 3862 kB in 6s (685 kB/s) 631s Reading package lists... 632s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 632s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 632s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 632s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 633s Reading package lists... 633s Reading package lists... 633s Building dependency tree... 633s Reading state information... 633s Calculating upgrade... 634s The following packages will be upgraded: 634s cryptsetup-bin dracut-install iproute2 iptables libcryptsetup12 libip4tc2 634s libip6tc2 libxtables12 wget 634s 9 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 634s Need to get 2534 kB of archives. 634s After this operation, 18.4 kB of additional disk space will be used. 634s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 iptables arm64 1.8.11-2ubuntu3 [386 kB] 634s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 libip4tc2 arm64 1.8.11-2ubuntu3 [24.3 kB] 634s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 libip6tc2 arm64 1.8.11-2ubuntu3 [24.7 kB] 634s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 libxtables12 arm64 1.8.11-2ubuntu3 [36.7 kB] 634s Get:5 http://ftpmaster.internal/ubuntu resolute/main arm64 iproute2 arm64 6.18.0-1ubuntu1 [1171 kB] 636s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 libcryptsetup12 arm64 2:2.8.0-1ubuntu3 [274 kB] 636s Get:7 http://ftpmaster.internal/ubuntu resolute/main arm64 wget arm64 1.25.0-2ubuntu4 [344 kB] 636s Get:8 http://ftpmaster.internal/ubuntu resolute/main arm64 cryptsetup-bin arm64 2:2.8.0-1ubuntu3 [227 kB] 636s Get:9 http://ftpmaster.internal/ubuntu resolute/main arm64 dracut-install arm64 109-11ubuntu1 [45.3 kB] 636s dpkg-preconfigure: unable to re-open stdin: No such file or directory 636s Fetched 2534 kB in 2s (1319 kB/s) 636s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 136597 files and directories currently installed.) 636s Preparing to unpack .../0-iptables_1.8.11-2ubuntu3_arm64.deb ... 636s Unpacking iptables (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 636s Preparing to unpack .../1-libip4tc2_1.8.11-2ubuntu3_arm64.deb ... 636s Unpacking libip4tc2:arm64 (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 636s Preparing to unpack .../2-libip6tc2_1.8.11-2ubuntu3_arm64.deb ... 636s Unpacking libip6tc2:arm64 (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 637s Preparing to unpack .../3-libxtables12_1.8.11-2ubuntu3_arm64.deb ... 637s Unpacking libxtables12:arm64 (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 637s Preparing to unpack .../4-iproute2_6.18.0-1ubuntu1_arm64.deb ... 637s Unpacking iproute2 (6.18.0-1ubuntu1) over (6.16.0-1ubuntu3) ... 637s Preparing to unpack .../5-libcryptsetup12_2%3a2.8.0-1ubuntu3_arm64.deb ... 637s Unpacking libcryptsetup12:arm64 (2:2.8.0-1ubuntu3) over (2:2.8.0-1ubuntu2) ... 637s Preparing to unpack .../6-wget_1.25.0-2ubuntu4_arm64.deb ... 637s Unpacking wget (1.25.0-2ubuntu4) over (1.25.0-2ubuntu3) ... 637s Preparing to unpack .../7-cryptsetup-bin_2%3a2.8.0-1ubuntu3_arm64.deb ... 637s Unpacking cryptsetup-bin (2:2.8.0-1ubuntu3) over (2:2.8.0-1ubuntu2) ... 637s Preparing to unpack .../8-dracut-install_109-11ubuntu1_arm64.deb ... 637s Unpacking dracut-install (109-11ubuntu1) over (109-9ubuntu1) ... 637s Setting up libip4tc2:arm64 (1.8.11-2ubuntu3) ... 637s Setting up wget (1.25.0-2ubuntu4) ... 637s Setting up libip6tc2:arm64 (1.8.11-2ubuntu3) ... 637s Setting up libxtables12:arm64 (1.8.11-2ubuntu3) ... 637s Setting up dracut-install (109-11ubuntu1) ... 637s Setting up libcryptsetup12:arm64 (2:2.8.0-1ubuntu3) ... 637s Setting up cryptsetup-bin (2:2.8.0-1ubuntu3) ... 637s Setting up iptables (1.8.11-2ubuntu3) ... 638s Setting up iproute2 (6.18.0-1ubuntu1) ... 638s Processing triggers for man-db (2.13.1-1build1) ... 639s Processing triggers for install-info (7.2-5) ... 639s Processing triggers for libc-bin (2.42-2ubuntu4) ... 639s autopkgtest [23:01:00]: upgrading testbed (apt dist-upgrade and autopurge) 639s Reading package lists... 640s Building dependency tree... 640s Reading state information... 640s Calculating upgrade... 640s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 640s Reading package lists... 641s Building dependency tree... 641s Reading state information... 641s Solving dependencies... 641s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 644s Reading package lists... 644s Building dependency tree... 644s Reading state information... 644s Solving dependencies... 645s The following NEW packages will be installed: 645s build-essential cpp cpp-15 cpp-15-aarch64-linux-gnu cpp-aarch64-linux-gnu 645s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 645s fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax g++ g++-15 645s g++-15-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-15 645s gcc-15-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-15 645s gfortran-15-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 645s javascript-common libamd3 libasan8 libblas-dev libblas3 libboost-dev 645s libboost1.90-dev libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 645s libcolamd3 libcrypt-dev libdatrie1 libdeflate-dev libdeflate0 libfontconfig1 645s libgcc-15-dev libgfortran-15-dev libgfortran5 libglpk40 libgomp1 645s libgraphite2-3 libharfbuzz0b libhdf5-310 libhdf5-hl-310 libhwasan0 libice6 645s libicu-dev libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 645s libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4 645s libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery 645s libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json 645s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 645s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 645s liblapack-dev liblapack3 liblerc4 liblsan0 libltdl7 liblua5.4-0 liblzma-dev 645s libmpc3 libncurses-dev libnetcdf22 libpango-1.0-0 libpangocairo-1.0-0 645s libpangoft2-1.0-0 libpaper-utils libpaper2 libpcre2-16-0 libpcre2-32-0 645s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 645s libreadline-dev libsharpyuv0 libsm6 libstdc++-15-dev libsuitesparseconfig7 645s libsz2 libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 645s libtsan2 libubsan1 libwebp7 libxcb-render0 libxcb-shm0 libxft2 libxrender1 645s libxss1 libxt6t64 libzstd-dev linux-libc-dev node-bootstrap-sass 645s node-html5shiv node-normalize.css pandoc pandoc-data pkg-r-autopkgtest 645s pkgconf pkgconf-bin r-base-core r-base-dev r-bioc-biocgenerics 645s r-bioc-biostrings r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-iranges 645s r-bioc-s4vectors r-bioc-ucsc.utils r-bioc-xvector r-bioc-zlibbioc 645s r-cran-askpass r-cran-base64enc r-cran-bh r-cran-bigmemory 645s r-cran-bigmemory.sri r-cran-bio3d r-cran-bitops r-cran-brio r-cran-bslib 645s r-cran-cachem r-cran-callr r-cran-cli r-cran-commonmark r-cran-cpp11 645s r-cran-crayon r-cran-curl r-cran-desc r-cran-diffobj r-cran-digest 645s r-cran-evaluate r-cran-fastmap r-cran-fontawesome r-cran-fs r-cran-glue 645s r-cran-highr r-cran-htmltools r-cran-httpuv r-cran-httr r-cran-igraph 645s r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-later r-cran-lattice 645s r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-matrix r-cran-memoise 645s r-cran-mime r-cran-ncdf4 r-cran-openssl r-cran-pkgbuild r-cran-pkgconfig 645s r-cran-pkgkitten r-cran-pkgload r-cran-praise r-cran-processx 645s r-cran-promises r-cran-ps r-cran-r6 r-cran-rappdirs r-cran-rcpp r-cran-rcurl 645s r-cran-rlang r-cran-rmarkdown r-cran-rprojroot r-cran-sass r-cran-shiny 645s r-cran-sourcetools r-cran-sys r-cran-testthat r-cran-tinytex r-cran-uuid 645s r-cran-vctrs r-cran-waldo r-cran-withr r-cran-xfun r-cran-xml r-cran-xtable 645s r-cran-yaml rpcsvc-proto unzip x11-common xdg-utils zip zlib1g-dev 645s 0 upgraded, 222 newly installed, 0 to remove and 0 not upgraded. 645s Need to get 278 MB of archives. 645s After this operation, 1042 MB of additional disk space will be used. 645s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 libc-dev-bin arm64 2.42-2ubuntu4 [22.5 kB] 645s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 linux-libc-dev arm64 6.19.0-3.3 [1819 kB] 648s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 libcrypt-dev arm64 1:4.5.1-1 [123 kB] 648s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 rpcsvc-proto arm64 1.4.3-1build1 [65.6 kB] 648s Get:5 http://ftpmaster.internal/ubuntu resolute/main arm64 libc6-dev arm64 2.42-2ubuntu4 [1765 kB] 651s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 libisl23 arm64 0.27-1build1 [676 kB] 652s Get:7 http://ftpmaster.internal/ubuntu resolute/main arm64 libmpc3 arm64 1.3.1-2 [55.6 kB] 652s Get:8 http://ftpmaster.internal/ubuntu resolute/main arm64 cpp-15-aarch64-linux-gnu arm64 15.2.0-12ubuntu1 [11.7 MB] 673s Get:9 http://ftpmaster.internal/ubuntu resolute/main arm64 cpp-15 arm64 15.2.0-12ubuntu1 [1030 B] 673s Get:10 http://ftpmaster.internal/ubuntu resolute/main arm64 cpp-aarch64-linux-gnu arm64 4:15.2.0-4ubuntu1 [5736 B] 673s Get:11 http://ftpmaster.internal/ubuntu resolute/main arm64 cpp arm64 4:15.2.0-4ubuntu1 [22.4 kB] 673s Get:12 http://ftpmaster.internal/ubuntu resolute/main arm64 libcc1-0 arm64 15.2.0-12ubuntu1 [49.0 kB] 673s Get:13 http://ftpmaster.internal/ubuntu resolute/main arm64 libgomp1 arm64 15.2.0-12ubuntu1 [147 kB] 673s Get:14 http://ftpmaster.internal/ubuntu resolute/main arm64 libitm1 arm64 15.2.0-12ubuntu1 [27.8 kB] 673s Get:15 http://ftpmaster.internal/ubuntu resolute/main arm64 libasan8 arm64 15.2.0-12ubuntu1 [2920 kB] 677s Get:16 http://ftpmaster.internal/ubuntu resolute/main arm64 liblsan0 arm64 15.2.0-12ubuntu1 [1316 kB] 680s Get:17 http://ftpmaster.internal/ubuntu resolute/main arm64 libtsan2 arm64 15.2.0-12ubuntu1 [2688 kB] 685s Get:18 http://ftpmaster.internal/ubuntu resolute/main arm64 libubsan1 arm64 15.2.0-12ubuntu1 [1175 kB] 686s Get:19 http://ftpmaster.internal/ubuntu resolute/main arm64 libhwasan0 arm64 15.2.0-12ubuntu1 [1638 kB] 689s Get:20 http://ftpmaster.internal/ubuntu resolute/main arm64 libgcc-15-dev arm64 15.2.0-12ubuntu1 [2600 kB] 695s Get:21 http://ftpmaster.internal/ubuntu resolute/main arm64 gcc-15-aarch64-linux-gnu arm64 15.2.0-12ubuntu1 [23.1 MB] 761s Get:22 http://ftpmaster.internal/ubuntu resolute/main arm64 gcc-15 arm64 15.2.0-12ubuntu1 [519 kB] 761s Get:23 http://ftpmaster.internal/ubuntu resolute/main arm64 gcc-aarch64-linux-gnu arm64 4:15.2.0-4ubuntu1 [1206 B] 761s Get:24 http://ftpmaster.internal/ubuntu resolute/main arm64 gcc arm64 4:15.2.0-4ubuntu1 [5016 B] 761s Get:25 http://ftpmaster.internal/ubuntu resolute/main arm64 libstdc++-15-dev arm64 15.2.0-12ubuntu1 [2549 kB] 768s Get:26 http://ftpmaster.internal/ubuntu resolute/main arm64 g++-15-aarch64-linux-gnu arm64 15.2.0-12ubuntu1 [13.2 MB] 794s Get:27 http://ftpmaster.internal/ubuntu resolute/main arm64 g++-15 arm64 15.2.0-12ubuntu1 [25.3 kB] 794s Get:28 http://ftpmaster.internal/ubuntu resolute/main arm64 g++-aarch64-linux-gnu arm64 4:15.2.0-4ubuntu1 [956 B] 794s Get:29 http://ftpmaster.internal/ubuntu resolute/main arm64 g++ arm64 4:15.2.0-4ubuntu1 [1080 B] 794s Get:30 http://ftpmaster.internal/ubuntu resolute/main arm64 build-essential arm64 12.12ubuntu2 [5254 B] 794s Get:31 http://ftpmaster.internal/ubuntu resolute/main arm64 dctrl-tools arm64 2.24-3build4 [102 kB] 794s Get:32 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-mono all 2.37-8build1 [502 kB] 794s Get:33 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-core all 2.37-8build1 [834 kB] 796s Get:34 http://ftpmaster.internal/ubuntu resolute/main arm64 fontconfig-config arm64 2.17.1-3ubuntu1 [38.5 kB] 796s Get:35 http://ftpmaster.internal/ubuntu resolute/main arm64 libfontconfig1 arm64 2.17.1-3ubuntu1 [144 kB] 796s Get:36 http://ftpmaster.internal/ubuntu resolute/main arm64 fontconfig arm64 2.17.1-3ubuntu1 [181 kB] 796s Get:37 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1build1 [531 kB] 797s Get:38 http://ftpmaster.internal/ubuntu resolute/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-6 [119 kB] 797s Get:39 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-mathjax all 2.7.9+dfsg-1build1 [2283 kB] 801s Get:40 http://ftpmaster.internal/ubuntu resolute/main arm64 libgfortran5 arm64 15.2.0-12ubuntu1 [451 kB] 801s Get:41 http://ftpmaster.internal/ubuntu resolute/main arm64 libgfortran-15-dev arm64 15.2.0-12ubuntu1 [490 kB] 801s Get:42 http://ftpmaster.internal/ubuntu resolute/main arm64 gfortran-15-aarch64-linux-gnu arm64 15.2.0-12ubuntu1 [12.5 MB] 826s Get:43 http://ftpmaster.internal/ubuntu resolute/main arm64 gfortran-15 arm64 15.2.0-12ubuntu1 [18.1 kB] 826s Get:44 http://ftpmaster.internal/ubuntu resolute/main arm64 gfortran-aarch64-linux-gnu arm64 4:15.2.0-4ubuntu1 [1022 B] 826s Get:45 http://ftpmaster.internal/ubuntu resolute/main arm64 gfortran arm64 4:15.2.0-4ubuntu1 [1160 B] 826s Get:46 http://ftpmaster.internal/ubuntu resolute/main arm64 icu-devtools arm64 78.2-1ubuntu1 [207 kB] 826s Get:47 http://ftpmaster.internal/ubuntu resolute/main arm64 javascript-common all 12+nmu1build1 [4864 B] 826s Get:48 http://ftpmaster.internal/ubuntu resolute/main arm64 libsuitesparseconfig7 arm64 1:7.12.1+dfsg-1 [22.0 kB] 826s Get:49 http://ftpmaster.internal/ubuntu resolute/universe arm64 libamd3 arm64 1:7.12.1+dfsg-1 [34.6 kB] 826s Get:50 http://ftpmaster.internal/ubuntu resolute/main arm64 libblas3 arm64 3.12.1-7ubuntu1 [181 kB] 826s Get:51 http://ftpmaster.internal/ubuntu resolute/main arm64 libblas-dev arm64 3.12.1-7ubuntu1 [160 kB] 826s Get:52 http://ftpmaster.internal/ubuntu resolute/main arm64 libboost1.90-dev arm64 1.90.0-2ubuntu1 [11.5 MB] 848s Get:53 http://ftpmaster.internal/ubuntu resolute/main arm64 libboost-dev arm64 1.90.0.0ubuntu3 [4764 B] 848s Get:54 http://ftpmaster.internal/ubuntu resolute/main arm64 libbz2-dev arm64 1.0.8-6build2 [34.9 kB] 848s Get:55 http://ftpmaster.internal/ubuntu resolute/main arm64 libpixman-1-0 arm64 0.46.4-1 [204 kB] 848s Get:56 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-render0 arm64 1.17.0-2ubuntu1 [16.4 kB] 848s Get:57 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-shm0 arm64 1.17.0-2ubuntu1 [5938 B] 848s Get:58 http://ftpmaster.internal/ubuntu resolute/main arm64 libxrender1 arm64 1:0.9.12-1 [19.5 kB] 848s Get:59 http://ftpmaster.internal/ubuntu resolute/main arm64 libcairo2 arm64 1.18.4-3 [556 kB] 849s Get:60 http://ftpmaster.internal/ubuntu resolute/main arm64 libcolamd3 arm64 1:7.12.1+dfsg-1 [27.1 kB] 849s Get:61 http://ftpmaster.internal/ubuntu resolute/main arm64 libdatrie1 arm64 0.2.14-1 [19.6 kB] 849s Get:62 http://ftpmaster.internal/ubuntu resolute/main arm64 libdeflate0 arm64 1.23-2build1 [46.8 kB] 849s Get:63 http://ftpmaster.internal/ubuntu resolute/main arm64 libdeflate-dev arm64 1.23-2build1 [54.3 kB] 849s Get:64 http://ftpmaster.internal/ubuntu resolute/main arm64 libltdl7 arm64 2.5.4-9 [43.3 kB] 849s Get:65 http://ftpmaster.internal/ubuntu resolute/universe arm64 libglpk40 arm64 5.0-2 [347 kB] 849s Get:66 http://ftpmaster.internal/ubuntu resolute/main arm64 libgraphite2-3 arm64 1.3.14-11ubuntu1 [72.1 kB] 849s Get:67 http://ftpmaster.internal/ubuntu resolute/main arm64 libharfbuzz0b arm64 12.3.2-1 [510 kB] 849s Get:68 http://ftpmaster.internal/ubuntu resolute/universe arm64 libsz2 arm64 1.1.5-1 [17.0 kB] 849s Get:69 http://ftpmaster.internal/ubuntu resolute/universe arm64 libhdf5-310 arm64 1.14.6+repack-2 [1287 kB] 853s Get:70 http://ftpmaster.internal/ubuntu resolute/universe arm64 libhdf5-hl-310 arm64 1.14.6+repack-2 [59.1 kB] 853s Get:71 http://ftpmaster.internal/ubuntu resolute/main arm64 x11-common all 1:7.7+24ubuntu1 [22.4 kB] 853s Get:72 http://ftpmaster.internal/ubuntu resolute/main arm64 libice6 arm64 2:1.1.1-1build1 [43.0 kB] 853s Get:73 http://ftpmaster.internal/ubuntu resolute/main arm64 libicu-dev arm64 78.2-1ubuntu1 [12.5 MB] 892s Get:74 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg-turbo8 arm64 2.1.5-4ubuntu3 [161 kB] 892s Get:75 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg-turbo8-dev arm64 2.1.5-4ubuntu3 [301 kB] 892s Get:76 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 892s Get:77 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 892s Get:78 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 892s Get:79 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-bootstrap all 3.4.1+dfsg-6 [129 kB] 892s Get:80 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-popper.js all 1.16.1+ds-6build1 [53.8 kB] 892s Get:81 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-bootstrap4 all 4.6.2+dfsg-1 [532 kB] 893s Get:82 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-d3 all 3.5.17-4build1 [136 kB] 893s Get:83 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 893s Get:84 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-highlight.js all 10.7.3+dfsg-2 [144 kB] 893s Get:85 http://ftpmaster.internal/ubuntu resolute/main arm64 libjs-jquery all 3.7.1+dfsg+~3.5.33-1build1 [321 kB] 893s Get:86 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2build1 [145 kB] 893s Get:87 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 893s Get:88 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-2 [3946 B] 893s Get:89 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 893s Get:90 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1build1 [251 kB] 893s Get:91 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-json all 0~20221030+~1.0.8-1build1 [20.6 kB] 893s Get:92 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-prettify all 2015.12.04+dfsg-3 [41.4 kB] 893s Get:93 http://ftpmaster.internal/ubuntu resolute/main arm64 liblapack3 arm64 3.12.1-7ubuntu1 [2299 kB] 897s Get:94 http://ftpmaster.internal/ubuntu resolute/main arm64 liblapack-dev arm64 3.12.1-7ubuntu1 [4456 kB] 907s Get:95 http://ftpmaster.internal/ubuntu resolute/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu2 [174 kB] 907s Get:96 http://ftpmaster.internal/ubuntu resolute/main arm64 liblua5.4-0 arm64 5.4.8-1 [171 kB] 907s Get:97 http://ftpmaster.internal/ubuntu resolute/main arm64 libncurses-dev arm64 6.6+20251231-1 [391 kB] 907s Get:98 http://ftpmaster.internal/ubuntu resolute/universe arm64 libnetcdf22 arm64 1:4.9.3-1build1 [555 kB] 908s Get:99 http://ftpmaster.internal/ubuntu resolute/main arm64 libthai-data all 0.1.30-1 [155 kB] 908s Get:100 http://ftpmaster.internal/ubuntu resolute/main arm64 libthai0 arm64 0.1.30-1 [18.3 kB] 908s Get:101 http://ftpmaster.internal/ubuntu resolute/main arm64 libpango-1.0-0 arm64 1.57.0-1 [238 kB] 908s Get:102 http://ftpmaster.internal/ubuntu resolute/main arm64 libpangoft2-1.0-0 arm64 1.57.0-1 [51.5 kB] 908s Get:103 http://ftpmaster.internal/ubuntu resolute/main arm64 libpangocairo-1.0-0 arm64 1.57.0-1 [27.9 kB] 908s Get:104 http://ftpmaster.internal/ubuntu resolute/main arm64 libpaper2 arm64 2.2.5-0.3build1 [17.3 kB] 908s Get:105 http://ftpmaster.internal/ubuntu resolute/main arm64 libpaper-utils arm64 2.2.5-0.3build1 [15.4 kB] 908s Get:106 http://ftpmaster.internal/ubuntu resolute/main arm64 libpcre2-16-0 arm64 10.46-1 [225 kB] 908s Get:107 http://ftpmaster.internal/ubuntu resolute/main arm64 libpcre2-32-0 arm64 10.46-1 [213 kB] 908s Get:108 http://ftpmaster.internal/ubuntu resolute/main arm64 libpcre2-posix3 arm64 10.46-1 [7300 B] 908s Get:109 http://ftpmaster.internal/ubuntu resolute/main arm64 libpcre2-dev arm64 10.46-1 [772 kB] 910s Get:110 http://ftpmaster.internal/ubuntu resolute/main arm64 libpkgconf3 arm64 1.8.1-4build1 [33.7 kB] 910s Get:111 http://ftpmaster.internal/ubuntu resolute/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu2 [899 kB] 912s Get:112 http://ftpmaster.internal/ubuntu resolute/main arm64 libpng-dev arm64 1.6.54-1 [268 kB] 912s Get:113 http://ftpmaster.internal/ubuntu resolute/main arm64 libreadline-dev arm64 8.3-3 [199 kB] 912s Get:114 http://ftpmaster.internal/ubuntu resolute/main arm64 libsharpyuv0 arm64 1.5.0-0.1build1 [16.7 kB] 912s Get:115 http://ftpmaster.internal/ubuntu resolute/main arm64 libsm6 arm64 2:1.2.6-1build1 [16.8 kB] 912s Get:116 http://ftpmaster.internal/ubuntu resolute/main arm64 libtcl8.6 arm64 8.6.17+dfsg-1build1 [983 kB] 914s Get:117 http://ftpmaster.internal/ubuntu resolute/main arm64 libjbig0 arm64 2.1-6.1ubuntu3 [29.2 kB] 914s Get:118 http://ftpmaster.internal/ubuntu resolute/main arm64 libwebp7 arm64 1.5.0-0.1build1 [205 kB] 914s Get:119 http://ftpmaster.internal/ubuntu resolute/main arm64 libtiff6 arm64 4.7.0-3ubuntu3 [196 kB] 914s Get:120 http://ftpmaster.internal/ubuntu resolute/main arm64 libxft2 arm64 2.3.6-1build2 [43.2 kB] 914s Get:121 http://ftpmaster.internal/ubuntu resolute/main arm64 libxss1 arm64 1:1.2.3-1build4 [7102 B] 914s Get:122 http://ftpmaster.internal/ubuntu resolute/main arm64 libtk8.6 arm64 8.6.17-1 [811 kB] 916s Get:123 http://ftpmaster.internal/ubuntu resolute/main arm64 libxt6t64 arm64 1:1.2.1-1.3 [168 kB] 916s Get:124 http://ftpmaster.internal/ubuntu resolute/main arm64 libzstd-dev arm64 1.5.7+dfsg-3 [349 kB] 916s Get:125 http://ftpmaster.internal/ubuntu resolute/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 916s Get:126 http://ftpmaster.internal/ubuntu resolute/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 916s Get:127 http://ftpmaster.internal/ubuntu resolute/universe arm64 node-normalize.css all 8.0.1-5.1 [10.4 kB] 916s Get:128 http://ftpmaster.internal/ubuntu resolute/universe arm64 pandoc-data all 3.1.11.1-3build1 [78.8 kB] 916s Get:129 http://ftpmaster.internal/ubuntu resolute/universe arm64 pandoc arm64 3.1.11.1+ds-4 [28.0 MB] 971s Get:130 http://ftpmaster.internal/ubuntu resolute/main arm64 zip arm64 3.0-15ubuntu3 [170 kB] 971s Get:131 http://ftpmaster.internal/ubuntu resolute/main arm64 unzip arm64 6.0-29ubuntu1 [176 kB] 971s Get:132 http://ftpmaster.internal/ubuntu resolute/main arm64 xdg-utils all 1.2.1-2ubuntu2 [66.1 kB] 971s Get:133 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-base-core arm64 4.5.2-1ubuntu2 [28.6 MB] 1016s Get:134 http://ftpmaster.internal/ubuntu resolute/main arm64 liblzma-dev arm64 5.8.2-2 [180 kB] 1016s Get:135 http://ftpmaster.internal/ubuntu resolute/main arm64 pkgconf-bin arm64 1.8.1-4build1 [21.7 kB] 1016s Get:136 http://ftpmaster.internal/ubuntu resolute/main arm64 pkgconf arm64 1.8.1-4build1 [16.8 kB] 1016s Get:137 http://ftpmaster.internal/ubuntu resolute/main arm64 libtirpc-dev arm64 1.3.6+ds-1 [202 kB] 1016s Get:138 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-base-dev all 4.5.2-1ubuntu2 [1880 B] 1016s Get:139 http://ftpmaster.internal/ubuntu resolute/universe arm64 pkg-r-autopkgtest all 20250812 [6158 B] 1016s Get:140 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-biocgenerics all 0.52.0-2 [624 kB] 1017s Get:141 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-s4vectors arm64 0.44.0+dfsg-2 [2054 kB] 1022s Get:142 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-iranges arm64 2.40.1-3 [2301 kB] 1027s Get:143 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB] 1027s Get:144 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-xvector arm64 0.46.0-2 [618 kB] 1028s Get:145 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-curl arm64 7.0.0+dfsg-1 [202 kB] 1028s Get:146 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-jsonlite arm64 1.9.1+dfsg-1 [445 kB] 1028s Get:147 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-mime arm64 0.12-2 [35.8 kB] 1028s Get:148 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-sys arm64 3.4.3-1 [45.2 kB] 1028s Get:149 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-askpass arm64 1.2.1-1 [24.8 kB] 1028s Get:150 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-openssl arm64 2.3.2+dfsg-1 [406 kB] 1028s Get:151 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-r6 all 2.6.1-1 [101 kB] 1028s Get:152 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 1028s Get:153 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-ucsc.utils all 1.2.0+ds-2 [77.2 kB] 1028s Get:154 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB] 1055s Get:155 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-genomeinfodb all 1.42.3+dfsg-1 [3887 kB] 1061s Get:156 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-crayon all 1.5.3-1 [165 kB] 1061s Get:157 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-biostrings arm64 2.74.1+dfsg-2 [13.3 MB] 1081s Get:158 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-base64enc arm64 0.1-3-3build1 [28.5 kB] 1081s Get:159 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-bh all 1.84.0-1 [5962 B] 1081s Get:160 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-bigmemory.sri all 0.1.8-1 [13.4 kB] 1081s Get:161 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-littler arm64 0.3.22-1 [85.1 kB] 1081s Get:162 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 1081s Get:163 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rcpp arm64 1.1.0-1 [2011 kB] 1084s Get:164 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-uuid arm64 1.2-1-1 [48.7 kB] 1084s Get:165 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-bigmemory arm64 4.6.4-2 [458 kB] 1085s Get:166 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-bio3d arm64 2.4-5-1 [3013 kB] 1089s Get:167 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-bitops arm64 1.0-9-1 [30.2 kB] 1089s Get:168 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-brio arm64 1.1.5-1 [39.1 kB] 1089s Get:169 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rlang arm64 1.1.5-3 [1706 kB] 1091s Get:170 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-fastmap arm64 1.2.0-1 [70.6 kB] 1091s Get:171 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-cachem arm64 1.1.0-1 [74.1 kB] 1091s Get:172 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-digest arm64 0.6.39-1 [196 kB] 1091s Get:173 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-htmltools arm64 0.5.8.1-1 [373 kB] 1091s Get:174 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-5 [13.7 kB] 1091s Get:175 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-cli arm64 3.6.4-1 [1374 kB] 1093s Get:176 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-lifecycle all 1.0.5+dfsg-1 [120 kB] 1093s Get:177 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-memoise all 2.0.1-1build1 [54.5 kB] 1093s Get:178 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-fs arm64 1.6.5+dfsg-1 [244 kB] 1093s Get:179 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rappdirs arm64 0.3.3-1build1 [49.5 kB] 1093s Get:180 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-sass arm64 0.4.9+dfsg-1 [957 kB] 1095s Get:181 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-bslib all 0.9.0+dfsg-3build1 [4560 kB] 1103s Get:182 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-ps arm64 1.9.0-1 [407 kB] 1103s Get:183 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-processx arm64 3.8.6-1 [363 kB] 1103s Get:184 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-callr all 3.7.6-1 [458 kB] 1103s Get:185 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-commonmark arm64 1.9.5-1 [130 kB] 1103s Get:186 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-cpp11 all 0.5.3-1 [242 kB] 1103s Get:187 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-desc all 1.4.3-1 [359 kB] 1103s Get:188 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-diffobj arm64 0.3.5-1build1 [1154 kB] 1105s Get:189 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-evaluate all 1.0.5-1 [117 kB] 1105s Get:190 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-fontawesome all 0.5.3-1 [1331 kB] 1107s Get:191 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-glue arm64 1.8.0-1 [163 kB] 1107s Get:192 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-xfun arm64 0.55+dfsg-1 [587 kB] 1108s Get:193 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 1108s Get:194 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-later arm64 1.4.1+dfsg-1 [141 kB] 1108s Get:195 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 1108s Get:196 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-promises arm64 1.3.2+dfsg-1 [290 kB] 1108s Get:197 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-httpuv arm64 1.6.15+dfsg-1 [489 kB] 1108s Get:198 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 r-cran-lattice arm64 0.22-9-1 [1399 kB] 1110s Get:199 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-matrix arm64 1.7-4-1 [4146 kB] 1116s Get:200 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-pkgconfig all 2.0.3-2build2 [20.4 kB] 1116s Get:201 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 1118s Get:202 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-igraph arm64 2.1.4-1build1 [5151 kB] 1125s Get:203 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-yaml arm64 2.3.10-1 [108 kB] 1125s Get:204 http://ftpmaster.internal/ubuntu resolute/main arm64 libjs-mathjax all 2.7.9+dfsg-1build1 [6017 kB] 1135s Get:205 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-knitr all 1.51+dfsg-1 [847 kB] 1136s Get:206 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-ncdf4 arm64 1.23-1build1 [277 kB] 1136s Get:207 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-pkgbuild all 1.4.8-1 [219 kB] 1136s Get:208 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rprojroot all 2.1.1-1 [131 kB] 1136s Get:209 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-pkgload all 1.4.1-1 [252 kB] 1136s Get:210 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-praise all 1.0.0-4build2 [20.9 kB] 1136s Get:211 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rcurl arm64 1.98-1.16+dfsg-1 [806 kB] 1137s Get:212 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-tinytex all 0.58-1 [148 kB] 1137s Get:213 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-modernizr all 3.13.0-0.1build1 [100 kB] 1137s Get:214 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-xtable all 1:1.8-4-2build1 [691 kB] 1138s Get:215 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 1138s Get:216 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 1138s Get:217 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 1138s Get:218 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB] 1144s Get:219 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rmarkdown all 2.30+dfsg-1 [1501 kB] 1146s Get:220 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-waldo all 0.6.2-1 [153 kB] 1146s Get:221 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-testthat arm64 3.2.3-1 [1644 kB] 1150s Get:222 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-xml arm64 3.99-0.20-1 [1749 kB] 1153s Preconfiguring packages ... 1153s Fetched 278 MB in 8min 28s (548 kB/s) 1153s Selecting previously unselected package libc-dev-bin. 1153s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 136600 files and directories currently installed.) 1153s Preparing to unpack .../000-libc-dev-bin_2.42-2ubuntu4_arm64.deb ... 1153s Unpacking libc-dev-bin (2.42-2ubuntu4) ... 1153s Selecting previously unselected package linux-libc-dev:arm64. 1153s Preparing to unpack .../001-linux-libc-dev_6.19.0-3.3_arm64.deb ... 1153s Unpacking linux-libc-dev:arm64 (6.19.0-3.3) ... 1154s Selecting previously unselected package libcrypt-dev:arm64. 1154s Preparing to unpack .../002-libcrypt-dev_1%3a4.5.1-1_arm64.deb ... 1154s Unpacking libcrypt-dev:arm64 (1:4.5.1-1) ... 1154s Selecting previously unselected package rpcsvc-proto. 1154s Preparing to unpack .../003-rpcsvc-proto_1.4.3-1build1_arm64.deb ... 1154s Unpacking rpcsvc-proto (1.4.3-1build1) ... 1154s Selecting previously unselected package libc6-dev:arm64. 1154s Preparing to unpack .../004-libc6-dev_2.42-2ubuntu4_arm64.deb ... 1154s Unpacking libc6-dev:arm64 (2.42-2ubuntu4) ... 1154s Selecting previously unselected package libisl23:arm64. 1154s Preparing to unpack .../005-libisl23_0.27-1build1_arm64.deb ... 1154s Unpacking libisl23:arm64 (0.27-1build1) ... 1154s Selecting previously unselected package libmpc3:arm64. 1154s Preparing to unpack .../006-libmpc3_1.3.1-2_arm64.deb ... 1154s Unpacking libmpc3:arm64 (1.3.1-2) ... 1154s Selecting previously unselected package cpp-15-aarch64-linux-gnu. 1154s Preparing to unpack .../007-cpp-15-aarch64-linux-gnu_15.2.0-12ubuntu1_arm64.deb ... 1154s Unpacking cpp-15-aarch64-linux-gnu (15.2.0-12ubuntu1) ... 1154s Selecting previously unselected package cpp-15. 1154s Preparing to unpack .../008-cpp-15_15.2.0-12ubuntu1_arm64.deb ... 1154s Unpacking cpp-15 (15.2.0-12ubuntu1) ... 1154s Selecting previously unselected package cpp-aarch64-linux-gnu. 1154s Preparing to unpack .../009-cpp-aarch64-linux-gnu_4%3a15.2.0-4ubuntu1_arm64.deb ... 1154s Unpacking cpp-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 1154s Selecting previously unselected package cpp. 1154s Preparing to unpack .../010-cpp_4%3a15.2.0-4ubuntu1_arm64.deb ... 1154s Unpacking cpp (4:15.2.0-4ubuntu1) ... 1154s Selecting previously unselected package libcc1-0:arm64. 1154s Preparing to unpack .../011-libcc1-0_15.2.0-12ubuntu1_arm64.deb ... 1154s Unpacking libcc1-0:arm64 (15.2.0-12ubuntu1) ... 1154s Selecting previously unselected package libgomp1:arm64. 1154s Preparing to unpack .../012-libgomp1_15.2.0-12ubuntu1_arm64.deb ... 1154s Unpacking libgomp1:arm64 (15.2.0-12ubuntu1) ... 1154s Selecting previously unselected package libitm1:arm64. 1154s Preparing to unpack .../013-libitm1_15.2.0-12ubuntu1_arm64.deb ... 1154s Unpacking libitm1:arm64 (15.2.0-12ubuntu1) ... 1154s Selecting previously unselected package libasan8:arm64. 1154s Preparing to unpack .../014-libasan8_15.2.0-12ubuntu1_arm64.deb ... 1154s Unpacking libasan8:arm64 (15.2.0-12ubuntu1) ... 1154s Selecting previously unselected package liblsan0:arm64. 1154s Preparing to unpack .../015-liblsan0_15.2.0-12ubuntu1_arm64.deb ... 1154s Unpacking liblsan0:arm64 (15.2.0-12ubuntu1) ... 1154s Selecting previously unselected package libtsan2:arm64. 1154s Preparing to unpack .../016-libtsan2_15.2.0-12ubuntu1_arm64.deb ... 1154s Unpacking libtsan2:arm64 (15.2.0-12ubuntu1) ... 1155s Selecting previously unselected package libubsan1:arm64. 1155s Preparing to unpack .../017-libubsan1_15.2.0-12ubuntu1_arm64.deb ... 1155s Unpacking libubsan1:arm64 (15.2.0-12ubuntu1) ... 1155s Selecting previously unselected package libhwasan0:arm64. 1155s Preparing to unpack .../018-libhwasan0_15.2.0-12ubuntu1_arm64.deb ... 1155s Unpacking libhwasan0:arm64 (15.2.0-12ubuntu1) ... 1155s Selecting previously unselected package libgcc-15-dev:arm64. 1155s Preparing to unpack .../019-libgcc-15-dev_15.2.0-12ubuntu1_arm64.deb ... 1155s Unpacking libgcc-15-dev:arm64 (15.2.0-12ubuntu1) ... 1155s Selecting previously unselected package gcc-15-aarch64-linux-gnu. 1155s Preparing to unpack .../020-gcc-15-aarch64-linux-gnu_15.2.0-12ubuntu1_arm64.deb ... 1155s Unpacking gcc-15-aarch64-linux-gnu (15.2.0-12ubuntu1) ... 1155s Selecting previously unselected package gcc-15. 1155s Preparing to unpack .../021-gcc-15_15.2.0-12ubuntu1_arm64.deb ... 1155s Unpacking gcc-15 (15.2.0-12ubuntu1) ... 1155s Selecting previously unselected package gcc-aarch64-linux-gnu. 1155s Preparing to unpack .../022-gcc-aarch64-linux-gnu_4%3a15.2.0-4ubuntu1_arm64.deb ... 1155s Unpacking gcc-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 1155s Selecting previously unselected package gcc. 1155s Preparing to unpack .../023-gcc_4%3a15.2.0-4ubuntu1_arm64.deb ... 1155s Unpacking gcc (4:15.2.0-4ubuntu1) ... 1155s Selecting previously unselected package libstdc++-15-dev:arm64. 1155s Preparing to unpack .../024-libstdc++-15-dev_15.2.0-12ubuntu1_arm64.deb ... 1155s Unpacking libstdc++-15-dev:arm64 (15.2.0-12ubuntu1) ... 1156s Selecting previously unselected package g++-15-aarch64-linux-gnu. 1156s Preparing to unpack .../025-g++-15-aarch64-linux-gnu_15.2.0-12ubuntu1_arm64.deb ... 1156s Unpacking g++-15-aarch64-linux-gnu (15.2.0-12ubuntu1) ... 1156s Selecting previously unselected package g++-15. 1156s Preparing to unpack .../026-g++-15_15.2.0-12ubuntu1_arm64.deb ... 1156s Unpacking g++-15 (15.2.0-12ubuntu1) ... 1156s Selecting previously unselected package g++-aarch64-linux-gnu. 1156s Preparing to unpack .../027-g++-aarch64-linux-gnu_4%3a15.2.0-4ubuntu1_arm64.deb ... 1156s Unpacking g++-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 1156s Selecting previously unselected package g++. 1156s Preparing to unpack .../028-g++_4%3a15.2.0-4ubuntu1_arm64.deb ... 1156s Unpacking g++ (4:15.2.0-4ubuntu1) ... 1156s Selecting previously unselected package build-essential. 1156s Preparing to unpack .../029-build-essential_12.12ubuntu2_arm64.deb ... 1156s Unpacking build-essential (12.12ubuntu2) ... 1156s Selecting previously unselected package dctrl-tools. 1156s Preparing to unpack .../030-dctrl-tools_2.24-3build4_arm64.deb ... 1156s Unpacking dctrl-tools (2.24-3build4) ... 1156s Selecting previously unselected package fonts-dejavu-mono. 1156s Preparing to unpack .../031-fonts-dejavu-mono_2.37-8build1_all.deb ... 1156s Unpacking fonts-dejavu-mono (2.37-8build1) ... 1156s Selecting previously unselected package fonts-dejavu-core. 1156s Preparing to unpack .../032-fonts-dejavu-core_2.37-8build1_all.deb ... 1156s Unpacking fonts-dejavu-core (2.37-8build1) ... 1156s Selecting previously unselected package fontconfig-config. 1156s Preparing to unpack .../033-fontconfig-config_2.17.1-3ubuntu1_arm64.deb ... 1156s Unpacking fontconfig-config (2.17.1-3ubuntu1) ... 1156s Selecting previously unselected package libfontconfig1:arm64. 1156s Preparing to unpack .../034-libfontconfig1_2.17.1-3ubuntu1_arm64.deb ... 1156s Unpacking libfontconfig1:arm64 (2.17.1-3ubuntu1) ... 1156s Selecting previously unselected package fontconfig. 1156s Preparing to unpack .../035-fontconfig_2.17.1-3ubuntu1_arm64.deb ... 1156s Unpacking fontconfig (2.17.1-3ubuntu1) ... 1157s Selecting previously unselected package fonts-font-awesome. 1157s Preparing to unpack .../036-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1build1_all.deb ... 1157s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1build1) ... 1157s Selecting previously unselected package fonts-glyphicons-halflings. 1157s Preparing to unpack .../037-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-6_all.deb ... 1157s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-6) ... 1157s Selecting previously unselected package fonts-mathjax. 1157s Preparing to unpack .../038-fonts-mathjax_2.7.9+dfsg-1build1_all.deb ... 1157s Unpacking fonts-mathjax (2.7.9+dfsg-1build1) ... 1157s Selecting previously unselected package libgfortran5:arm64. 1157s Preparing to unpack .../039-libgfortran5_15.2.0-12ubuntu1_arm64.deb ... 1157s Unpacking libgfortran5:arm64 (15.2.0-12ubuntu1) ... 1157s Selecting previously unselected package libgfortran-15-dev:arm64. 1157s Preparing to unpack .../040-libgfortran-15-dev_15.2.0-12ubuntu1_arm64.deb ... 1157s Unpacking libgfortran-15-dev:arm64 (15.2.0-12ubuntu1) ... 1157s Selecting previously unselected package gfortran-15-aarch64-linux-gnu. 1157s Preparing to unpack .../041-gfortran-15-aarch64-linux-gnu_15.2.0-12ubuntu1_arm64.deb ... 1157s Unpacking gfortran-15-aarch64-linux-gnu (15.2.0-12ubuntu1) ... 1157s Selecting previously unselected package gfortran-15. 1157s Preparing to unpack .../042-gfortran-15_15.2.0-12ubuntu1_arm64.deb ... 1157s Unpacking gfortran-15 (15.2.0-12ubuntu1) ... 1157s Selecting previously unselected package gfortran-aarch64-linux-gnu. 1157s Preparing to unpack .../043-gfortran-aarch64-linux-gnu_4%3a15.2.0-4ubuntu1_arm64.deb ... 1157s Unpacking gfortran-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 1157s Selecting previously unselected package gfortran. 1157s Preparing to unpack .../044-gfortran_4%3a15.2.0-4ubuntu1_arm64.deb ... 1157s Unpacking gfortran (4:15.2.0-4ubuntu1) ... 1157s Selecting previously unselected package icu-devtools. 1157s Preparing to unpack .../045-icu-devtools_78.2-1ubuntu1_arm64.deb ... 1157s Unpacking icu-devtools (78.2-1ubuntu1) ... 1157s Selecting previously unselected package javascript-common. 1157s Preparing to unpack .../046-javascript-common_12+nmu1build1_all.deb ... 1157s Unpacking javascript-common (12+nmu1build1) ... 1157s Selecting previously unselected package libsuitesparseconfig7:arm64. 1157s Preparing to unpack .../047-libsuitesparseconfig7_1%3a7.12.1+dfsg-1_arm64.deb ... 1157s Unpacking libsuitesparseconfig7:arm64 (1:7.12.1+dfsg-1) ... 1157s Selecting previously unselected package libamd3:arm64. 1157s Preparing to unpack .../048-libamd3_1%3a7.12.1+dfsg-1_arm64.deb ... 1157s Unpacking libamd3:arm64 (1:7.12.1+dfsg-1) ... 1157s Selecting previously unselected package libblas3:arm64. 1157s Preparing to unpack .../049-libblas3_3.12.1-7ubuntu1_arm64.deb ... 1157s Unpacking libblas3:arm64 (3.12.1-7ubuntu1) ... 1157s Selecting previously unselected package libblas-dev:arm64. 1157s Preparing to unpack .../050-libblas-dev_3.12.1-7ubuntu1_arm64.deb ... 1157s Unpacking libblas-dev:arm64 (3.12.1-7ubuntu1) ... 1157s Selecting previously unselected package libboost1.90-dev:arm64. 1157s Preparing to unpack .../051-libboost1.90-dev_1.90.0-2ubuntu1_arm64.deb ... 1157s Unpacking libboost1.90-dev:arm64 (1.90.0-2ubuntu1) ... 1159s Selecting previously unselected package libboost-dev:arm64. 1159s Preparing to unpack .../052-libboost-dev_1.90.0.0ubuntu3_arm64.deb ... 1159s Unpacking libboost-dev:arm64 (1.90.0.0ubuntu3) ... 1159s Selecting previously unselected package libbz2-dev:arm64. 1159s Preparing to unpack .../053-libbz2-dev_1.0.8-6build2_arm64.deb ... 1159s Unpacking libbz2-dev:arm64 (1.0.8-6build2) ... 1159s Selecting previously unselected package libpixman-1-0:arm64. 1159s Preparing to unpack .../054-libpixman-1-0_0.46.4-1_arm64.deb ... 1159s Unpacking libpixman-1-0:arm64 (0.46.4-1) ... 1159s Selecting previously unselected package libxcb-render0:arm64. 1159s Preparing to unpack .../055-libxcb-render0_1.17.0-2ubuntu1_arm64.deb ... 1159s Unpacking libxcb-render0:arm64 (1.17.0-2ubuntu1) ... 1159s Selecting previously unselected package libxcb-shm0:arm64. 1159s Preparing to unpack .../056-libxcb-shm0_1.17.0-2ubuntu1_arm64.deb ... 1159s Unpacking libxcb-shm0:arm64 (1.17.0-2ubuntu1) ... 1159s Selecting previously unselected package libxrender1:arm64. 1159s Preparing to unpack .../057-libxrender1_1%3a0.9.12-1_arm64.deb ... 1159s Unpacking libxrender1:arm64 (1:0.9.12-1) ... 1159s Selecting previously unselected package libcairo2:arm64. 1159s Preparing to unpack .../058-libcairo2_1.18.4-3_arm64.deb ... 1159s Unpacking libcairo2:arm64 (1.18.4-3) ... 1159s Selecting previously unselected package libcolamd3:arm64. 1159s Preparing to unpack .../059-libcolamd3_1%3a7.12.1+dfsg-1_arm64.deb ... 1159s Unpacking libcolamd3:arm64 (1:7.12.1+dfsg-1) ... 1159s Selecting previously unselected package libdatrie1:arm64. 1159s Preparing to unpack .../060-libdatrie1_0.2.14-1_arm64.deb ... 1159s Unpacking libdatrie1:arm64 (0.2.14-1) ... 1159s Selecting previously unselected package libdeflate0:arm64. 1159s Preparing to unpack .../061-libdeflate0_1.23-2build1_arm64.deb ... 1159s Unpacking libdeflate0:arm64 (1.23-2build1) ... 1159s Selecting previously unselected package libdeflate-dev:arm64. 1159s Preparing to unpack .../062-libdeflate-dev_1.23-2build1_arm64.deb ... 1159s Unpacking libdeflate-dev:arm64 (1.23-2build1) ... 1159s Selecting previously unselected package libltdl7:arm64. 1159s Preparing to unpack .../063-libltdl7_2.5.4-9_arm64.deb ... 1159s Unpacking libltdl7:arm64 (2.5.4-9) ... 1159s Selecting previously unselected package libglpk40:arm64. 1159s Preparing to unpack .../064-libglpk40_5.0-2_arm64.deb ... 1159s Unpacking libglpk40:arm64 (5.0-2) ... 1159s Selecting previously unselected package libgraphite2-3:arm64. 1159s Preparing to unpack .../065-libgraphite2-3_1.3.14-11ubuntu1_arm64.deb ... 1159s Unpacking libgraphite2-3:arm64 (1.3.14-11ubuntu1) ... 1159s Selecting previously unselected package libharfbuzz0b:arm64. 1160s Preparing to unpack .../066-libharfbuzz0b_12.3.2-1_arm64.deb ... 1160s Unpacking libharfbuzz0b:arm64 (12.3.2-1) ... 1160s Selecting previously unselected package libsz2:arm64. 1160s Preparing to unpack .../067-libsz2_1.1.5-1_arm64.deb ... 1160s Unpacking libsz2:arm64 (1.1.5-1) ... 1160s Selecting previously unselected package libhdf5-310:arm64. 1160s Preparing to unpack .../068-libhdf5-310_1.14.6+repack-2_arm64.deb ... 1160s Unpacking libhdf5-310:arm64 (1.14.6+repack-2) ... 1160s Selecting previously unselected package libhdf5-hl-310:arm64. 1160s Preparing to unpack .../069-libhdf5-hl-310_1.14.6+repack-2_arm64.deb ... 1160s Unpacking libhdf5-hl-310:arm64 (1.14.6+repack-2) ... 1160s Selecting previously unselected package x11-common. 1160s Preparing to unpack .../070-x11-common_1%3a7.7+24ubuntu1_all.deb ... 1160s Unpacking x11-common (1:7.7+24ubuntu1) ... 1160s Selecting previously unselected package libice6:arm64. 1160s Preparing to unpack .../071-libice6_2%3a1.1.1-1build1_arm64.deb ... 1160s Unpacking libice6:arm64 (2:1.1.1-1build1) ... 1160s Selecting previously unselected package libicu-dev:arm64. 1160s Preparing to unpack .../072-libicu-dev_78.2-1ubuntu1_arm64.deb ... 1160s Unpacking libicu-dev:arm64 (78.2-1ubuntu1) ... 1160s Selecting previously unselected package libjpeg-turbo8:arm64. 1160s Preparing to unpack .../073-libjpeg-turbo8_2.1.5-4ubuntu3_arm64.deb ... 1160s Unpacking libjpeg-turbo8:arm64 (2.1.5-4ubuntu3) ... 1160s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 1160s Preparing to unpack .../074-libjpeg-turbo8-dev_2.1.5-4ubuntu3_arm64.deb ... 1160s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-4ubuntu3) ... 1160s Selecting previously unselected package libjpeg8:arm64. 1160s Preparing to unpack .../075-libjpeg8_8c-2ubuntu11_arm64.deb ... 1160s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 1160s Selecting previously unselected package libjpeg8-dev:arm64. 1160s Preparing to unpack .../076-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 1160s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 1160s Selecting previously unselected package libjpeg-dev:arm64. 1160s Preparing to unpack .../077-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 1160s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 1160s Selecting previously unselected package libjs-bootstrap. 1160s Preparing to unpack .../078-libjs-bootstrap_3.4.1+dfsg-6_all.deb ... 1160s Unpacking libjs-bootstrap (3.4.1+dfsg-6) ... 1160s Selecting previously unselected package libjs-popper.js. 1160s Preparing to unpack .../079-libjs-popper.js_1.16.1+ds-6build1_all.deb ... 1160s Unpacking libjs-popper.js (1.16.1+ds-6build1) ... 1160s Selecting previously unselected package libjs-bootstrap4. 1160s Preparing to unpack .../080-libjs-bootstrap4_4.6.2+dfsg-1_all.deb ... 1161s Unpacking libjs-bootstrap4 (4.6.2+dfsg-1) ... 1161s Selecting previously unselected package libjs-d3. 1161s Preparing to unpack .../081-libjs-d3_3.5.17-4build1_all.deb ... 1161s Unpacking libjs-d3 (3.5.17-4build1) ... 1161s Selecting previously unselected package libjs-es5-shim. 1161s Preparing to unpack .../082-libjs-es5-shim_4.6.7-2_all.deb ... 1161s Unpacking libjs-es5-shim (4.6.7-2) ... 1161s Selecting previously unselected package libjs-highlight.js. 1161s Preparing to unpack .../083-libjs-highlight.js_10.7.3+dfsg-2_all.deb ... 1161s Unpacking libjs-highlight.js (10.7.3+dfsg-2) ... 1161s Selecting previously unselected package libjs-jquery. 1161s Preparing to unpack .../084-libjs-jquery_3.7.1+dfsg+~3.5.33-1build1_all.deb ... 1161s Unpacking libjs-jquery (3.7.1+dfsg+~3.5.33-1build1) ... 1161s Selecting previously unselected package libjs-jquery-datatables. 1161s Preparing to unpack .../085-libjs-jquery-datatables_1.11.5+dfsg-2build1_all.deb ... 1161s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2build1) ... 1161s Selecting previously unselected package libjs-sifter.js. 1161s Preparing to unpack .../086-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 1161s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 1161s Selecting previously unselected package libjs-microplugin.js. 1161s Preparing to unpack .../087-libjs-microplugin.js_0.0.3+dfsg-2_all.deb ... 1161s Unpacking libjs-microplugin.js (0.0.3+dfsg-2) ... 1161s Selecting previously unselected package libjs-jquery-selectize.js. 1161s Preparing to unpack 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1162s Selecting previously unselected package libpkgconf3:arm64. 1162s Preparing to unpack .../109-libpkgconf3_1.8.1-4build1_arm64.deb ... 1162s Unpacking libpkgconf3:arm64 (1.8.1-4build1) ... 1162s Selecting previously unselected package zlib1g-dev:arm64. 1162s Preparing to unpack .../110-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu2_arm64.deb ... 1162s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu2) ... 1162s Selecting previously unselected package libpng-dev:arm64. 1162s Preparing to unpack .../111-libpng-dev_1.6.54-1_arm64.deb ... 1162s Unpacking libpng-dev:arm64 (1.6.54-1) ... 1162s Selecting previously unselected package libreadline-dev:arm64. 1162s Preparing to unpack .../112-libreadline-dev_8.3-3_arm64.deb ... 1162s Unpacking libreadline-dev:arm64 (8.3-3) ... 1162s Selecting previously unselected package libsharpyuv0:arm64. 1162s Preparing to unpack .../113-libsharpyuv0_1.5.0-0.1build1_arm64.deb ... 1162s Unpacking libsharpyuv0:arm64 (1.5.0-0.1build1) ... 1162s 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1163s Unpacking node-bootstrap-sass (3.4.3-2) ... 1163s Selecting previously unselected package node-html5shiv. 1163s Preparing to unpack .../125-node-html5shiv_3.7.3+dfsg-5_all.deb ... 1163s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 1163s Selecting previously unselected package node-normalize.css. 1163s Preparing to unpack .../126-node-normalize.css_8.0.1-5.1_all.deb ... 1163s Unpacking node-normalize.css (8.0.1-5.1) ... 1163s Selecting previously unselected package pandoc-data. 1163s Preparing to unpack .../127-pandoc-data_3.1.11.1-3build1_all.deb ... 1163s Unpacking pandoc-data (3.1.11.1-3build1) ... 1163s Selecting previously unselected package pandoc. 1163s Preparing to unpack .../128-pandoc_3.1.11.1+ds-4_arm64.deb ... 1163s Unpacking pandoc (3.1.11.1+ds-4) ... 1164s Selecting previously unselected package zip. 1164s Preparing to unpack .../129-zip_3.0-15ubuntu3_arm64.deb ... 1164s Unpacking zip (3.0-15ubuntu3) ... 1164s Selecting previously unselected package unzip. 1164s Preparing to unpack .../130-unzip_6.0-29ubuntu1_arm64.deb ... 1164s Unpacking unzip (6.0-29ubuntu1) ... 1164s Selecting previously unselected package xdg-utils. 1164s Preparing to unpack .../131-xdg-utils_1.2.1-2ubuntu2_all.deb ... 1164s Unpacking xdg-utils (1.2.1-2ubuntu2) ... 1164s Selecting previously unselected package r-base-core. 1164s Preparing to unpack .../132-r-base-core_4.5.2-1ubuntu2_arm64.deb ... 1164s Unpacking r-base-core (4.5.2-1ubuntu2) ... 1165s Selecting previously unselected package liblzma-dev:arm64. 1165s Preparing to unpack .../133-liblzma-dev_5.8.2-2_arm64.deb ... 1165s Unpacking liblzma-dev:arm64 (5.8.2-2) ... 1165s Selecting previously unselected package pkgconf-bin. 1165s Preparing to unpack .../134-pkgconf-bin_1.8.1-4build1_arm64.deb ... 1165s Unpacking pkgconf-bin (1.8.1-4build1) ... 1165s Selecting previously unselected package pkgconf:arm64. 1165s Preparing to unpack .../135-pkgconf_1.8.1-4build1_arm64.deb ... 1165s Unpacking pkgconf:arm64 (1.8.1-4build1) ... 1165s Selecting previously unselected package libtirpc-dev:arm64. 1165s Preparing to unpack .../136-libtirpc-dev_1.3.6+ds-1_arm64.deb ... 1165s Unpacking libtirpc-dev:arm64 (1.3.6+ds-1) ... 1165s Selecting previously unselected package r-base-dev. 1165s Preparing to unpack .../137-r-base-dev_4.5.2-1ubuntu2_all.deb ... 1165s Unpacking r-base-dev (4.5.2-1ubuntu2) ... 1165s Selecting previously unselected package pkg-r-autopkgtest. 1165s Preparing to unpack .../138-pkg-r-autopkgtest_20250812_all.deb ... 1165s Unpacking pkg-r-autopkgtest (20250812) ... 1165s Selecting previously unselected package r-bioc-biocgenerics. 1165s Preparing to unpack .../139-r-bioc-biocgenerics_0.52.0-2_all.deb ... 1165s Unpacking r-bioc-biocgenerics (0.52.0-2) ... 1165s Selecting previously unselected package r-bioc-s4vectors. 1165s Preparing to unpack .../140-r-bioc-s4vectors_0.44.0+dfsg-2_arm64.deb ... 1165s Unpacking r-bioc-s4vectors (0.44.0+dfsg-2) ... 1165s Selecting previously unselected package r-bioc-iranges. 1165s Preparing to unpack .../141-r-bioc-iranges_2.40.1-3_arm64.deb ... 1165s Unpacking r-bioc-iranges (2.40.1-3) ... 1165s Selecting previously unselected package r-bioc-zlibbioc. 1165s Preparing to unpack .../142-r-bioc-zlibbioc_1.52.0+dfsg-2_all.deb ... 1165s Unpacking r-bioc-zlibbioc (1.52.0+dfsg-2) ... 1165s Selecting previously unselected package r-bioc-xvector. 1165s Preparing to unpack .../143-r-bioc-xvector_0.46.0-2_arm64.deb ... 1165s Unpacking r-bioc-xvector (0.46.0-2) ... 1165s Selecting previously unselected package r-cran-curl. 1165s Preparing to unpack .../144-r-cran-curl_7.0.0+dfsg-1_arm64.deb ... 1165s Unpacking r-cran-curl (7.0.0+dfsg-1) ... 1165s Selecting previously unselected package r-cran-jsonlite. 1165s Preparing to unpack .../145-r-cran-jsonlite_1.9.1+dfsg-1_arm64.deb ... 1165s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ... 1165s Selecting previously unselected package r-cran-mime. 1165s Preparing to unpack .../146-r-cran-mime_0.12-2_arm64.deb ... 1165s Unpacking r-cran-mime (0.12-2) ... 1165s Selecting previously unselected package r-cran-sys. 1165s Preparing to unpack .../147-r-cran-sys_3.4.3-1_arm64.deb ... 1165s Unpacking r-cran-sys (3.4.3-1) ... 1165s Selecting previously unselected package r-cran-askpass. 1165s Preparing to unpack .../148-r-cran-askpass_1.2.1-1_arm64.deb ... 1165s Unpacking r-cran-askpass (1.2.1-1) ... 1165s Selecting previously unselected package r-cran-openssl. 1165s Preparing to unpack .../149-r-cran-openssl_2.3.2+dfsg-1_arm64.deb ... 1165s Unpacking r-cran-openssl (2.3.2+dfsg-1) ... 1165s Selecting previously unselected package r-cran-r6. 1165s Preparing to unpack .../150-r-cran-r6_2.6.1-1_all.deb ... 1165s Unpacking r-cran-r6 (2.6.1-1) ... 1165s Selecting previously unselected package r-cran-httr. 1165s Preparing to unpack .../151-r-cran-httr_1.4.7+dfsg-1_all.deb ... 1165s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 1165s Selecting previously unselected package r-bioc-ucsc.utils. 1166s Preparing to unpack .../152-r-bioc-ucsc.utils_1.2.0+ds-2_all.deb ... 1166s Unpacking r-bioc-ucsc.utils (1.2.0+ds-2) ... 1166s Selecting previously unselected package r-bioc-genomeinfodbdata. 1166s Preparing to unpack .../153-r-bioc-genomeinfodbdata_1.2.13-2_all.deb ... 1166s Unpacking r-bioc-genomeinfodbdata (1.2.13-2) ... 1166s Selecting previously unselected package r-bioc-genomeinfodb. 1166s Preparing to unpack .../154-r-bioc-genomeinfodb_1.42.3+dfsg-1_all.deb ... 1166s Unpacking r-bioc-genomeinfodb (1.42.3+dfsg-1) ... 1166s Selecting previously unselected package r-cran-crayon. 1166s Preparing to unpack .../155-r-cran-crayon_1.5.3-1_all.deb ... 1166s Unpacking r-cran-crayon (1.5.3-1) ... 1166s Selecting previously unselected package r-bioc-biostrings. 1166s Preparing to unpack .../156-r-bioc-biostrings_2.74.1+dfsg-2_arm64.deb ... 1166s Unpacking r-bioc-biostrings (2.74.1+dfsg-2) ... 1166s Selecting previously unselected package r-cran-base64enc. 1166s Preparing to unpack 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Unpacking r-cran-rlang (1.1.5-3) ... 1167s Selecting previously unselected package r-cran-fastmap. 1167s Preparing to unpack .../169-r-cran-fastmap_1.2.0-1_arm64.deb ... 1167s Unpacking r-cran-fastmap (1.2.0-1) ... 1167s Selecting previously unselected package r-cran-cachem. 1167s Preparing to unpack .../170-r-cran-cachem_1.1.0-1_arm64.deb ... 1167s Unpacking r-cran-cachem (1.1.0-1) ... 1167s Selecting previously unselected package r-cran-digest. 1167s Preparing to unpack .../171-r-cran-digest_0.6.39-1_arm64.deb ... 1167s Unpacking r-cran-digest (0.6.39-1) ... 1167s Selecting previously unselected package r-cran-htmltools. 1167s Preparing to unpack .../172-r-cran-htmltools_0.5.8.1-1_arm64.deb ... 1167s Unpacking r-cran-htmltools (0.5.8.1-1) ... 1167s Selecting previously unselected package r-cran-jquerylib. 1167s Preparing to unpack .../173-r-cran-jquerylib_0.1.4+dfsg-5_all.deb ... 1167s Unpacking r-cran-jquerylib (0.1.4+dfsg-5) ... 1167s Selecting previously unselected package r-cran-cli. 1167s Preparing to unpack .../174-r-cran-cli_3.6.4-1_arm64.deb ... 1167s Unpacking r-cran-cli (3.6.4-1) ... 1167s Selecting previously unselected package r-cran-lifecycle. 1167s Preparing to unpack .../175-r-cran-lifecycle_1.0.5+dfsg-1_all.deb ... 1167s Unpacking r-cran-lifecycle (1.0.5+dfsg-1) ... 1167s Selecting previously unselected package r-cran-memoise. 1167s Preparing to unpack .../176-r-cran-memoise_2.0.1-1build1_all.deb ... 1167s Unpacking r-cran-memoise (2.0.1-1build1) ... 1167s Selecting previously unselected package r-cran-fs. 1167s Preparing to unpack .../177-r-cran-fs_1.6.5+dfsg-1_arm64.deb ... 1167s Unpacking r-cran-fs (1.6.5+dfsg-1) ... 1167s Selecting previously unselected package r-cran-rappdirs. 1167s Preparing to unpack .../178-r-cran-rappdirs_0.3.3-1build1_arm64.deb ... 1167s Unpacking r-cran-rappdirs (0.3.3-1build1) ... 1167s Selecting previously unselected package r-cran-sass. 1167s Preparing to unpack .../179-r-cran-sass_0.4.9+dfsg-1_arm64.deb ... 1167s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 1167s Selecting previously unselected package r-cran-bslib. 1167s Preparing to unpack .../180-r-cran-bslib_0.9.0+dfsg-3build1_all.deb ... 1167s Unpacking r-cran-bslib (0.9.0+dfsg-3build1) ... 1167s Selecting previously unselected package r-cran-ps. 1167s Preparing to unpack .../181-r-cran-ps_1.9.0-1_arm64.deb ... 1167s Unpacking r-cran-ps (1.9.0-1) ... 1167s Selecting previously unselected package r-cran-processx. 1167s Preparing to unpack .../182-r-cran-processx_3.8.6-1_arm64.deb ... 1167s Unpacking r-cran-processx (3.8.6-1) ... 1167s Selecting previously unselected package r-cran-callr. 1167s Preparing to unpack .../183-r-cran-callr_3.7.6-1_all.deb ... 1167s Unpacking r-cran-callr (3.7.6-1) ... 1167s Selecting previously unselected package r-cran-commonmark. 1167s Preparing to unpack .../184-r-cran-commonmark_1.9.5-1_arm64.deb ... 1167s Unpacking r-cran-commonmark (1.9.5-1) ... 1167s Selecting previously unselected package r-cran-cpp11. 1168s Preparing to unpack .../185-r-cran-cpp11_0.5.3-1_all.deb ... 1168s Unpacking r-cran-cpp11 (0.5.3-1) ... 1168s Selecting previously unselected package r-cran-desc. 1168s Preparing to unpack .../186-r-cran-desc_1.4.3-1_all.deb ... 1168s Unpacking r-cran-desc (1.4.3-1) ... 1168s Selecting previously unselected package r-cran-diffobj. 1168s Preparing to unpack .../187-r-cran-diffobj_0.3.5-1build1_arm64.deb ... 1168s Unpacking r-cran-diffobj (0.3.5-1build1) ... 1168s Selecting previously unselected package r-cran-evaluate. 1168s Preparing to unpack .../188-r-cran-evaluate_1.0.5-1_all.deb ... 1168s Unpacking r-cran-evaluate (1.0.5-1) ... 1168s Selecting previously unselected package r-cran-fontawesome. 1168s Preparing to unpack .../189-r-cran-fontawesome_0.5.3-1_all.deb ... 1168s Unpacking r-cran-fontawesome (0.5.3-1) ... 1168s Selecting previously unselected package r-cran-glue. 1168s Preparing to unpack .../190-r-cran-glue_1.8.0-1_arm64.deb ... 1168s Unpacking r-cran-glue (1.8.0-1) ... 1168s Selecting previously unselected package r-cran-xfun. 1168s Preparing to unpack .../191-r-cran-xfun_0.55+dfsg-1_arm64.deb ... 1168s Unpacking r-cran-xfun (0.55+dfsg-1) ... 1168s Selecting previously unselected package r-cran-highr. 1168s Preparing to unpack .../192-r-cran-highr_0.11+dfsg-1_all.deb ... 1168s Unpacking r-cran-highr (0.11+dfsg-1) ... 1168s Selecting previously unselected package r-cran-later. 1168s Preparing to unpack .../193-r-cran-later_1.4.1+dfsg-1_arm64.deb ... 1168s Unpacking r-cran-later (1.4.1+dfsg-1) ... 1168s Selecting previously unselected package r-cran-magrittr. 1168s Preparing to unpack .../194-r-cran-magrittr_2.0.3-1_arm64.deb ... 1168s Unpacking r-cran-magrittr (2.0.3-1) ... 1168s Selecting previously unselected package r-cran-promises. 1168s Preparing to unpack .../195-r-cran-promises_1.3.2+dfsg-1_arm64.deb ... 1168s Unpacking r-cran-promises (1.3.2+dfsg-1) ... 1168s Selecting previously unselected package r-cran-httpuv. 1168s Preparing to unpack .../196-r-cran-httpuv_1.6.15+dfsg-1_arm64.deb ... 1168s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 1168s Selecting previously unselected package r-cran-lattice. 1168s Preparing to unpack .../197-r-cran-lattice_0.22-9-1_arm64.deb ... 1168s Unpacking r-cran-lattice (0.22-9-1) ... 1168s Selecting previously unselected package r-cran-matrix. 1168s Preparing to unpack .../198-r-cran-matrix_1.7-4-1_arm64.deb ... 1168s Unpacking r-cran-matrix (1.7-4-1) ... 1168s Selecting previously unselected package r-cran-pkgconfig. 1168s Preparing to unpack .../199-r-cran-pkgconfig_2.0.3-2build2_all.deb ... 1168s Unpacking r-cran-pkgconfig (2.0.3-2build2) ... 1168s Selecting previously unselected package r-cran-vctrs. 1168s Preparing to unpack .../200-r-cran-vctrs_0.6.5-1_arm64.deb ... 1168s Unpacking r-cran-vctrs (0.6.5-1) ... 1168s Selecting previously unselected package r-cran-igraph. 1168s Preparing to unpack .../201-r-cran-igraph_2.1.4-1build1_arm64.deb ... 1168s Unpacking r-cran-igraph (2.1.4-1build1) ... 1169s Selecting previously unselected package r-cran-yaml. 1169s Preparing to unpack .../202-r-cran-yaml_2.3.10-1_arm64.deb ... 1169s Unpacking r-cran-yaml (2.3.10-1) ... 1169s Selecting previously unselected package libjs-mathjax. 1169s Preparing to unpack .../203-libjs-mathjax_2.7.9+dfsg-1build1_all.deb ... 1169s Unpacking libjs-mathjax (2.7.9+dfsg-1build1) ... 1169s Selecting previously unselected package r-cran-knitr. 1169s Preparing to unpack .../204-r-cran-knitr_1.51+dfsg-1_all.deb ... 1169s Unpacking r-cran-knitr (1.51+dfsg-1) ... 1169s Selecting previously unselected package r-cran-ncdf4. 1169s Preparing to unpack .../205-r-cran-ncdf4_1.23-1build1_arm64.deb ... 1169s Unpacking r-cran-ncdf4 (1.23-1build1) ... 1169s Selecting previously unselected package r-cran-pkgbuild. 1169s Preparing to unpack .../206-r-cran-pkgbuild_1.4.8-1_all.deb ... 1169s Unpacking r-cran-pkgbuild (1.4.8-1) ... 1169s Selecting previously unselected package r-cran-rprojroot. 1169s 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libjs-modernizr (3.13.0-0.1build1) ... 1170s Selecting previously unselected package r-cran-xtable. 1170s Preparing to unpack .../213-r-cran-xtable_1%3a1.8-4-2build1_all.deb ... 1170s Unpacking r-cran-xtable (1:1.8-4-2build1) ... 1170s Selecting previously unselected package r-cran-sourcetools. 1170s Preparing to unpack .../214-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 1170s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 1170s Selecting previously unselected package r-cran-withr. 1170s Preparing to unpack .../215-r-cran-withr_3.0.2+dfsg-1_all.deb ... 1170s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 1170s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 1170s Preparing to unpack .../216-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 1170s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 1170s Selecting previously unselected package r-cran-shiny. 1170s Preparing to unpack .../217-r-cran-shiny_1.10.0+dfsg-2_all.deb ... 1170s 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up libsharpyuv0:arm64 (1.5.0-0.1build1) ... 1170s Setting up fonts-mathjax (2.7.9+dfsg-1build1) ... 1170s Setting up liblerc4:arm64 (4.0.0+ds-5ubuntu2) ... 1170s Setting up libzstd-dev:arm64 (1.5.7+dfsg-3) ... 1170s Setting up libjs-mathjax (2.7.9+dfsg-1build1) ... 1170s Setting up libxrender1:arm64 (1:0.9.12-1) ... 1170s Setting up libdatrie1:arm64 (0.2.14-1) ... 1170s Setting up libjs-popper.js (1.16.1+ds-6build1) ... 1170s Setting up libxcb-render0:arm64 (1.17.0-2ubuntu1) ... 1170s Setting up libjs-sifter.js (0.6.0+dfsg-3) ... 1170s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-6) ... 1170s Setting up unzip (6.0-29ubuntu1) ... 1170s Setting up x11-common (1:7.7+24ubuntu1) ... 1171s Setting up node-html5shiv (3.7.3+dfsg-5) ... 1171s Setting up libdeflate0:arm64 (1.23-2build1) ... 1171s Setting up linux-libc-dev:arm64 (6.19.0-3.3) ... 1171s Setting up libjs-microplugin.js (0.0.3+dfsg-2) ... 1171s Setting up libxcb-shm0:arm64 (1.17.0-2ubuntu1) ... 1171s Setting up 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(1:1.8-4-2build1) ... 1174s Setting up r-cran-cli (3.6.4-1) ... 1174s Setting up gfortran (4:15.2.0-4ubuntu1) ... 1174s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 1174s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 1174s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 1174s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 1174s Setting up r-cran-lifecycle (1.0.5+dfsg-1) ... 1174s Setting up r-cran-bitops (1.0-9-1) ... 1174s Setting up r-cran-rprojroot (2.1.1-1) ... 1174s Setting up r-bioc-zlibbioc (1.52.0+dfsg-2) ... 1174s Setting up r-cran-askpass (1.2.1-1) ... 1174s Setting up r-cran-fastmap (1.2.0-1) ... 1174s Setting up r-cran-jsonlite (1.9.1+dfsg-1) ... 1174s 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(2.42-2ubuntu4) ... 1174s Processing triggers for man-db (2.13.1-1build1) ... 1174s Processing triggers for install-info (7.2-5) ... 1236s autopkgtest [23:10:57]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 1236s autopkgtest [23:10:57]: test pkg-r-autopkgtest: [----------------------- 1237s Test: Try to load the R library bio3d 1237s 1237s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 1237s Copyright (C) 2025 The R Foundation for Statistical Computing 1237s Platform: aarch64-unknown-linux-gnu 1237s 1237s R is free software and comes with ABSOLUTELY NO WARRANTY. 1237s You are welcome to redistribute it under certain conditions. 1237s Type 'license()' or 'licence()' for distribution details. 1237s 1237s R is a collaborative project with many contributors. 1237s Type 'contributors()' for more information and 1237s 'citation()' on how to cite R or R packages in publications. 1237s 1237s Type 'demo()' for some demos, 'help()' for on-line help, or 1237s 'help.start()' for an HTML browser interface to help. 1237s Type 'q()' to quit R. 1237s 1237s > library('bio3d') 1237s > 1237s autopkgtest [23:10:58]: test pkg-r-autopkgtest: -----------------------] 1238s autopkgtest [23:10:59]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 1238s pkg-r-autopkgtest PASS 1238s autopkgtest [23:10:59]: @@@@@@@@@@@@@@@@@@@@ summary 1238s run-unit-test PASS 1238s pkg-r-autopkgtest PASS