0s autopkgtest [22:47:22]: starting date and time: 2026-02-09 22:47:22+0000
  0s autopkgtest [22:47:22]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op
  0s autopkgtest [22:47:22]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.anps47jg/out --timeout-copy=6000 --needs-internet=try --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:lattice --apt-upgrade r-cran-adegraphics --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=lattice/0.22-9-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-arm64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@sto01-arm64-11.secgroup --name adt-resolute-arm64-r-cran-adegraphics-20260209-224721-juju-7f2275-prod-proposed-migration-environment-20-7213e52f-529e-4ab9-a612-1c305e68617f --image adt/ubuntu-resolute-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-autopkgtest-workers-arm64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/
  3s Creating nova instance adt-resolute-arm64-r-cran-adegraphics-20260209-224721-juju-7f2275-prod-proposed-migration-environment-20-7213e52f-529e-4ab9-a612-1c305e68617f from image adt/ubuntu-resolute-arm64-server-20260209.img (UUID 793037ca-75af-461b-82de-f8081300b2e3)...
141s autopkgtest [22:49:43]: testbed dpkg architecture: arm64
141s autopkgtest [22:49:43]: testbed apt version: 3.1.15
142s autopkgtest [22:49:44]: @@@@@@@@@@@@@@@@@@@@ test bed setup
142s autopkgtest [22:49:44]: testbed release detected to be: None
142s autopkgtest [22:49:44]: updating testbed package index (apt update)
143s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB]
143s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease
143s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease
143s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease
143s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1645 kB]
145s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [176 kB]
145s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [29.4 kB]
145s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 Packages [246 kB]
145s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 c-n-f Metadata [6216 B]
145s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 c-n-f Metadata [304 B]
145s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 Packages [1580 kB]
148s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 c-n-f Metadata [32.0 kB]
148s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 Packages [21.7 kB]
148s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 c-n-f Metadata [688 B]
149s Fetched 3862 kB in 5s (730 kB/s)
150s Reading package lists...
151s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease
151s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease
151s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease
151s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease
152s Reading package lists...
152s Reading package lists...
152s Building dependency tree...
152s Reading state information...
152s Calculating upgrade...
152s The following packages will be upgraded:
152s   cryptsetup-bin dracut-install iproute2 iptables libcryptsetup12 libip4tc2
152s   libip6tc2 libxtables12 wget
152s 9 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
152s Need to get 2534 kB of archives.
152s After this operation, 18.4 kB of additional disk space will be used.
152s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 iptables arm64 1.8.11-2ubuntu3 [386 kB]
152s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 libip4tc2 arm64 1.8.11-2ubuntu3 [24.3 kB]
152s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 libip6tc2 arm64 1.8.11-2ubuntu3 [24.7 kB]
152s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 libxtables12 arm64 1.8.11-2ubuntu3 [36.7 kB]
153s Get:5 http://ftpmaster.internal/ubuntu resolute/main arm64 iproute2 arm64 6.18.0-1ubuntu1 [1171 kB]
154s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 libcryptsetup12 arm64 2:2.8.0-1ubuntu3 [274 kB]
154s Get:7 http://ftpmaster.internal/ubuntu resolute/main arm64 wget arm64 1.25.0-2ubuntu4 [344 kB]
154s Get:8 http://ftpmaster.internal/ubuntu resolute/main arm64 cryptsetup-bin arm64 2:2.8.0-1ubuntu3 [227 kB]
154s Get:9 http://ftpmaster.internal/ubuntu resolute/main arm64 dracut-install arm64 109-11ubuntu1 [45.3 kB]
155s dpkg-preconfigure: unable to re-open stdin: No such file or directory
155s Fetched 2534 kB in 2s (1389 kB/s)
155s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 136597 files and directories currently installed.)
155s Preparing to unpack .../0-iptables_1.8.11-2ubuntu3_arm64.deb ...
155s Unpacking iptables (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ...
155s Preparing to unpack .../1-libip4tc2_1.8.11-2ubuntu3_arm64.deb ...
155s Unpacking libip4tc2:arm64 (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ...
155s Preparing to unpack .../2-libip6tc2_1.8.11-2ubuntu3_arm64.deb ...
155s Unpacking libip6tc2:arm64 (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ...
155s Preparing to unpack .../3-libxtables12_1.8.11-2ubuntu3_arm64.deb ...
155s Unpacking libxtables12:arm64 (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ...
155s Preparing to unpack .../4-iproute2_6.18.0-1ubuntu1_arm64.deb ...
155s Unpacking iproute2 (6.18.0-1ubuntu1) over (6.16.0-1ubuntu3) ...
155s Preparing to unpack .../5-libcryptsetup12_2%3a2.8.0-1ubuntu3_arm64.deb ...
155s Unpacking libcryptsetup12:arm64 (2:2.8.0-1ubuntu3) over (2:2.8.0-1ubuntu2) ...
156s Preparing to unpack .../6-wget_1.25.0-2ubuntu4_arm64.deb ...
156s Unpacking wget (1.25.0-2ubuntu4) over (1.25.0-2ubuntu3) ...
156s Preparing to unpack .../7-cryptsetup-bin_2%3a2.8.0-1ubuntu3_arm64.deb ...
156s Unpacking cryptsetup-bin (2:2.8.0-1ubuntu3) over (2:2.8.0-1ubuntu2) ...
156s Preparing to unpack .../8-dracut-install_109-11ubuntu1_arm64.deb ...
156s Unpacking dracut-install (109-11ubuntu1) over (109-9ubuntu1) ...
156s Setting up libip4tc2:arm64 (1.8.11-2ubuntu3) ...
156s Setting up wget (1.25.0-2ubuntu4) ...
156s Setting up libip6tc2:arm64 (1.8.11-2ubuntu3) ...
156s Setting up libxtables12:arm64 (1.8.11-2ubuntu3) ...
156s Setting up dracut-install (109-11ubuntu1) ...
156s Setting up libcryptsetup12:arm64 (2:2.8.0-1ubuntu3) ...
156s Setting up cryptsetup-bin (2:2.8.0-1ubuntu3) ...
156s Setting up iptables (1.8.11-2ubuntu3) ...
156s Setting up iproute2 (6.18.0-1ubuntu1) ...
156s Processing triggers for man-db (2.13.1-1build1) ...
157s Processing triggers for install-info (7.2-5) ...
157s Processing triggers for libc-bin (2.42-2ubuntu4) ...
157s autopkgtest [22:49:59]: upgrading testbed (apt dist-upgrade and autopurge)
157s Reading package lists...
158s Building dependency tree...
158s Reading state information...
158s Calculating upgrade...
158s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
158s Reading package lists...
159s Building dependency tree...
159s Reading state information...
159s Solving dependencies...
159s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
161s autopkgtest [22:50:03]: testbed running kernel: Linux 6.19.0-3-generic #3-Ubuntu SMP PREEMPT_DYNAMIC Fri Jan 23 19:46:27 UTC 2026
162s autopkgtest [22:50:04]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-adegraphics
169s Get:1 http://ftpmaster.internal/ubuntu resolute/universe r-cran-adegraphics 1.0-22-1 (dsc) [2404 B]
169s Get:2 http://ftpmaster.internal/ubuntu resolute/universe r-cran-adegraphics 1.0-22-1 (tar) [2847 kB]
169s Get:3 http://ftpmaster.internal/ubuntu resolute/universe r-cran-adegraphics 1.0-22-1 (diff) [3500 B]
169s gpgv: Signature made Thu Dec 11 02:52:52 2025 UTC
169s gpgv:                using RSA key 73471499CC60ED9EEE805946C5BD6C8F2295D502
169s gpgv:                issuer "plessy@debian.org"
169s gpgv: Can't check signature: No public key
169s dpkg-source: warning: cannot verify inline signature for ./r-cran-adegraphics_1.0-22-1.dsc: no acceptable signature found
169s autopkgtest [22:50:11]: testing package r-cran-adegraphics version 1.0-22-1
169s autopkgtest [22:50:11]: build not needed
173s autopkgtest [22:50:15]: test run-unit-test: preparing testbed
174s Reading package lists...
174s Building dependency tree...
174s Reading state information...
174s Solving dependencies...
174s The following NEW packages will be installed:
174s   fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
174s   fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax gdal-data
174s   gdal-plugins javascript-common libabsl20260107 libaec0 libaom3
174s   libarmadillo15 libarpack2t64 libavif16 libblas3 libblosc1 libcairo2
174s   libcfitsio10t64 libdatrie1 libdav1d7 libde265-0 libdeflate0 libfontconfig1
174s   libfreexl1 libfyba0t64 libgav1-2 libgdal38 libgeos-c1t64 libgeos3.14.1
174s   libgeotiff5 libgfortran5 libgif7 libgomp1 libgpgmepp6t64 libgraphite2-3
174s   libharfbuzz0b libhdf4-0 libhdf5-310 libhdf5-hl-310 libheif-plugin-aomdec
174s   libheif-plugin-libde265 libheif1 libhwy1t64 libice6 libjbig0 libjpeg-turbo8
174s   libjpeg8 libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim
174s   libjs-highlight.js libjs-jquery libjs-jquery-datatables
174s   libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-mathjax
174s   libjs-microplugin.js libjs-modernizr libjs-popper.js libjs-prettify
174s   libjs-sifter.js libjs-twitter-bootstrap-datepicker libjxl0.11 libkmlbase1t64
174s   libkmldom1t64 libkmlengine1t64 liblapack3 liblcms2-2 liblerc4 libltdl7
174s   liblua5.4-0 libminizip1t64 libmuparser2v5 libmysqlclient24 libnetcdf22
174s   libnlopt0 libodbc2 libodbcinst2 libopenjp2-7 libpango-1.0-0
174s   libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libpixman-1-0
174s   libpoppler147 libpq5 libproj25 libqhull-r8.0 librttopo1 libsharpyuv0 libsm6
174s   libsnappy1v5 libspatialite8t64 libsuperlu7 libsz2 libtcl8.6 libthai-data
174s   libthai0 libtiff6 libtk8.6 libudunits2-0 libudunits2-data liburiparser1
174s   libwebp7 libxcb-render0 libxcb-shm0 libxerces-c3.2t64 libxft2 libxrender1
174s   libxss1 libxt6t64 libyuv0 mysql-common node-bootstrap-sass node-html5shiv
174s   node-normalize.css pandoc pandoc-data proj-data r-base-core r-cran-abind
174s   r-cran-ade4 r-cran-adegraphics r-cran-backports r-cran-base64enc r-cran-boot
174s   r-cran-broom r-cran-bslib r-cran-cachem r-cran-car r-cran-cardata
174s   r-cran-caret r-cran-class r-cran-classint r-cran-cli r-cran-clock
174s   r-cran-codetools r-cran-colorspace r-cran-commonmark r-cran-conquer
174s   r-cran-cowplot r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-data.table
174s   r-cran-dbi r-cran-deldir r-cran-deriv r-cran-diagram r-cran-digest
174s   r-cran-doby r-cran-dplyr r-cran-e1071 r-cran-evaluate r-cran-fansi
174s   r-cran-farver r-cran-fastmap r-cran-fontawesome r-cran-foreach
174s   r-cran-forecast r-cran-formula r-cran-fracdiff r-cran-fs r-cran-future
174s   r-cran-future.apply r-cran-generics r-cran-ggplot2 r-cran-globals
174s   r-cran-glue r-cran-gower r-cran-gtable r-cran-guerry r-cran-hardhat
174s   r-cran-highr r-cran-htmltools r-cran-httpuv r-cran-interp r-cran-ipred
174s   r-cran-isoband r-cran-iterators r-cran-jpeg r-cran-jquerylib r-cran-jsonlite
174s   r-cran-kernsmooth r-cran-knitr r-cran-labeling r-cran-later r-cran-lattice
174s   r-cran-latticeextra r-cran-lava r-cran-lifecycle r-cran-listenv
174s   r-cran-littler r-cran-lme4 r-cran-lmtest r-cran-lubridate r-cran-magrittr
174s   r-cran-markdown r-cran-mass r-cran-matrix r-cran-matrixmodels
174s   r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-microbenchmark
174s   r-cran-mime r-cran-minqa r-cran-modelmetrics r-cran-modelr r-cran-nlme
174s   r-cran-nloptr r-cran-nnet r-cran-numderiv r-cran-parallelly r-cran-pbkrtest
174s   r-cran-pillar r-cran-pixmap r-cran-pkgconfig r-cran-pkgkitten r-cran-plyr
174s   r-cran-png r-cran-proc r-cran-prodlim r-cran-progressr r-cran-promises
174s   r-cran-proxy r-cran-purrr r-cran-quadprog r-cran-quantmod r-cran-quantreg
174s   r-cran-r6 r-cran-rappdirs r-cran-rbibutils r-cran-rcolorbrewer r-cran-rcpp
174s   r-cran-rcpparmadillo r-cran-rcppeigen r-cran-rdpack r-cran-recipes
174s   r-cran-reformulas r-cran-reshape2 r-cran-rlang r-cran-rmarkdown r-cran-rpart
174s   r-cran-s2 r-cran-sass r-cran-scales r-cran-sf r-cran-shape r-cran-shiny
174s   r-cran-sourcetools r-cran-sp r-cran-sparsem r-cran-sparsevctrs r-cran-spdata
174s   r-cran-spdep r-cran-squarem r-cran-statmod r-cran-stringi r-cran-stringr
174s   r-cran-survival r-cran-tibble r-cran-tidyr r-cran-tidyselect
174s   r-cran-timechange r-cran-timedate r-cran-tinytex r-cran-tseries r-cran-ttr
174s   r-cran-tzdb r-cran-units r-cran-urca r-cran-utf8 r-cran-vctrs
174s   r-cran-viridislite r-cran-withr r-cran-wk r-cran-xfun r-cran-xtable
174s   r-cran-xts r-cran-yaml r-cran-zoo unixodbc-common unzip x11-common xdg-utils
174s   zip
174s 0 upgraded, 292 newly installed, 0 to remove and 0 not upgraded.
174s Need to get 263 MB of archives.
174s After this operation, 755 MB of additional disk space will be used.
174s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-mono all 2.37-8build1 [502 kB]
174s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-core all 2.37-8build1 [834 kB]
176s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 fontconfig-config arm64 2.17.1-3ubuntu1 [38.5 kB]
176s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 libfontconfig1 arm64 2.17.1-3ubuntu1 [144 kB]
176s Get:5 http://ftpmaster.internal/ubuntu resolute/main arm64 fontconfig arm64 2.17.1-3ubuntu1 [181 kB]
176s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1build1 [531 kB]
176s Get:7 http://ftpmaster.internal/ubuntu resolute/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-6 [119 kB]
176s Get:8 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-mathjax all 2.7.9+dfsg-1build1 [2283 kB]
180s Get:9 http://ftpmaster.internal/ubuntu resolute/universe arm64 gdal-data all 3.12.1+dfsg-1 [278 kB]
180s Get:10 http://ftpmaster.internal/ubuntu resolute/universe arm64 gdal-plugins arm64 3.12.1+dfsg-1 [26.8 kB]
180s Get:11 http://ftpmaster.internal/ubuntu resolute/main arm64 javascript-common all 12+nmu1build1 [4864 B]
180s Get:12 http://ftpmaster.internal/ubuntu resolute/main arm64 libabsl20260107 arm64 20260107.0-1 [563 kB]
181s Get:13 http://ftpmaster.internal/ubuntu resolute/universe arm64 libaec0 arm64 1.1.5-1 [21.8 kB]
181s Get:14 http://ftpmaster.internal/ubuntu resolute/main arm64 libaom3 arm64 3.13.1-2 [1773 kB]
184s Get:15 http://ftpmaster.internal/ubuntu resolute/main arm64 libblas3 arm64 3.12.1-7ubuntu1 [181 kB]
184s Get:16 http://ftpmaster.internal/ubuntu resolute/main arm64 libgfortran5 arm64 15.2.0-12ubuntu1 [451 kB]
184s Get:17 http://ftpmaster.internal/ubuntu resolute/main arm64 liblapack3 arm64 3.12.1-7ubuntu1 [2299 kB]
188s Get:18 http://ftpmaster.internal/ubuntu resolute/universe arm64 libarpack2t64 arm64 3.9.1-6 [94.9 kB]
188s Get:19 http://ftpmaster.internal/ubuntu resolute/universe arm64 libsuperlu7 arm64 7.0.1+dfsg1-2 [171 kB]
188s Get:20 http://ftpmaster.internal/ubuntu resolute/universe arm64 libarmadillo15 arm64 1:15.2.1+dfsg-2 [108 kB]
188s Get:21 http://ftpmaster.internal/ubuntu resolute/universe arm64 libdav1d7 arm64 1.5.3-1 [297 kB]
188s Get:22 http://ftpmaster.internal/ubuntu resolute/universe arm64 libgav1-2 arm64 0.20.0-2build1 [547 kB]
189s Get:23 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg-turbo8 arm64 2.1.5-4ubuntu3 [161 kB]
189s Get:24 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B]
189s Get:25 http://ftpmaster.internal/ubuntu resolute/main arm64 libyuv0 arm64 0.0.1922.20260106-1 [160 kB]
189s Get:26 http://ftpmaster.internal/ubuntu resolute/universe arm64 libavif16 arm64 1.3.0-1ubuntu3 [112 kB]
189s Get:27 http://ftpmaster.internal/ubuntu resolute/main arm64 libsnappy1v5 arm64 1.2.2-2 [30.1 kB]
189s Get:28 http://ftpmaster.internal/ubuntu resolute/universe arm64 libblosc1 arm64 1.21.5+ds-2 [25.9 kB]
189s Get:29 http://ftpmaster.internal/ubuntu resolute/main arm64 libpixman-1-0 arm64 0.46.4-1 [204 kB]
189s Get:30 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-render0 arm64 1.17.0-2ubuntu1 [16.4 kB]
189s Get:31 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-shm0 arm64 1.17.0-2ubuntu1 [5938 B]
189s Get:32 http://ftpmaster.internal/ubuntu resolute/main arm64 libxrender1 arm64 1:0.9.12-1 [19.5 kB]
189s Get:33 http://ftpmaster.internal/ubuntu resolute/main arm64 libcairo2 arm64 1.18.4-3 [556 kB]
190s Get:34 http://ftpmaster.internal/ubuntu resolute/universe arm64 libcfitsio10t64 arm64 4.6.3-1 [517 kB]
190s Get:35 http://ftpmaster.internal/ubuntu resolute/main arm64 libdatrie1 arm64 0.2.14-1 [19.6 kB]
190s Get:36 http://ftpmaster.internal/ubuntu resolute/main arm64 libde265-0 arm64 1.0.16-1build1 [148 kB]
190s Get:37 http://ftpmaster.internal/ubuntu resolute/main arm64 libdeflate0 arm64 1.23-2build1 [46.8 kB]
190s Get:38 http://ftpmaster.internal/ubuntu resolute/universe arm64 libfyba0t64 arm64 4.1.1-11build2 [119 kB]
190s Get:39 http://ftpmaster.internal/ubuntu resolute/universe arm64 libminizip1t64 arm64 1:1.3.dfsg+really1.3.1-1ubuntu2 [24.4 kB]
190s Get:40 http://ftpmaster.internal/ubuntu resolute/universe arm64 libfreexl1 arm64 2.0.0-1build3 [42.4 kB]
190s Get:41 http://ftpmaster.internal/ubuntu resolute/universe arm64 libgeos3.14.1 arm64 3.14.1-2 [935 kB]
192s Get:42 http://ftpmaster.internal/ubuntu resolute/universe arm64 libgeos-c1t64 arm64 3.14.1-2 [110 kB]
192s Get:43 http://ftpmaster.internal/ubuntu resolute/universe arm64 proj-data all 9.7.1-1 [7950 kB]
207s Get:44 http://ftpmaster.internal/ubuntu resolute/main arm64 libjbig0 arm64 2.1-6.1ubuntu3 [29.2 kB]
207s Get:45 http://ftpmaster.internal/ubuntu resolute/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu2 [174 kB]
207s Get:46 http://ftpmaster.internal/ubuntu resolute/main arm64 libsharpyuv0 arm64 1.5.0-0.1build1 [16.7 kB]
207s Get:47 http://ftpmaster.internal/ubuntu resolute/main arm64 libwebp7 arm64 1.5.0-0.1build1 [205 kB]
207s Get:48 http://ftpmaster.internal/ubuntu resolute/main arm64 libtiff6 arm64 4.7.0-3ubuntu3 [196 kB]
207s Get:49 http://ftpmaster.internal/ubuntu resolute/universe arm64 libproj25 arm64 9.7.1-1 [1370 kB]
210s Get:50 http://ftpmaster.internal/ubuntu resolute/universe arm64 libgeotiff5 arm64 1.7.4-1build1 [62.0 kB]
210s Get:51 http://ftpmaster.internal/ubuntu resolute/main arm64 libgif7 arm64 5.2.2-1ubuntu3 [35.8 kB]
210s Get:52 http://ftpmaster.internal/ubuntu resolute/universe arm64 libsz2 arm64 1.1.5-1 [17.0 kB]
210s Get:53 http://ftpmaster.internal/ubuntu resolute/universe arm64 libhdf4-0 arm64 4.3.1-2 [304 kB]
210s Get:54 http://ftpmaster.internal/ubuntu resolute/universe arm64 libhdf5-310 arm64 1.14.6+repack-2 [1287 kB]
212s Get:55 http://ftpmaster.internal/ubuntu resolute/main arm64 libheif-plugin-aomdec arm64 1.21.2-1 [13.9 kB]
212s Get:56 http://ftpmaster.internal/ubuntu resolute/main arm64 libheif-plugin-libde265 arm64 1.21.2-1 [9696 B]
212s Get:57 http://ftpmaster.internal/ubuntu resolute/main arm64 libheif1 arm64 1.21.2-1 [502 kB]
212s Get:58 http://ftpmaster.internal/ubuntu resolute/main arm64 libhwy1t64 arm64 1.3.0-2 [513 kB]
212s Get:59 http://ftpmaster.internal/ubuntu resolute/main arm64 liblcms2-2 arm64 2.17-1 [170 kB]
212s Get:60 http://ftpmaster.internal/ubuntu resolute/main arm64 libjxl0.11 arm64 0.11.1-6ubuntu1 [909 kB]
214s Get:61 http://ftpmaster.internal/ubuntu resolute/universe arm64 liburiparser1 arm64 0.9.8+dfsg-2 [36.3 kB]
214s Get:62 http://ftpmaster.internal/ubuntu resolute/universe arm64 libkmlbase1t64 arm64 1.3.0-13 [48.2 kB]
214s Get:63 http://ftpmaster.internal/ubuntu resolute/universe arm64 libkmldom1t64 arm64 1.3.0-13 [143 kB]
214s Get:64 http://ftpmaster.internal/ubuntu resolute/universe arm64 libkmlengine1t64 arm64 1.3.0-13 [68.9 kB]
214s Get:65 http://ftpmaster.internal/ubuntu resolute/main arm64 libgomp1 arm64 15.2.0-12ubuntu1 [147 kB]
214s Get:66 http://ftpmaster.internal/ubuntu resolute/universe arm64 libmuparser2v5 arm64 2.3.4-2 [129 kB]
214s Get:67 http://ftpmaster.internal/ubuntu resolute/main arm64 mysql-common all 5.8+1.1.1ubuntu2 [7002 B]
214s Get:68 http://ftpmaster.internal/ubuntu resolute/main arm64 libmysqlclient24 arm64 8.4.8-0ubuntu1 [1244 kB]
216s Get:69 http://ftpmaster.internal/ubuntu resolute/universe arm64 libhdf5-hl-310 arm64 1.14.6+repack-2 [59.1 kB]
216s Get:70 http://ftpmaster.internal/ubuntu resolute/universe arm64 libnetcdf22 arm64 1:4.9.3-1build1 [555 kB]
217s Get:71 http://ftpmaster.internal/ubuntu resolute/main arm64 libltdl7 arm64 2.5.4-9 [43.3 kB]
217s Get:72 http://ftpmaster.internal/ubuntu resolute/main arm64 libodbc2 arm64 2.3.14-1 [143 kB]
217s Get:73 http://ftpmaster.internal/ubuntu resolute/main arm64 unixodbc-common all 2.3.14-1 [8792 B]
217s Get:74 http://ftpmaster.internal/ubuntu resolute/main arm64 libodbcinst2 arm64 2.3.14-1 [30.6 kB]
217s Get:75 http://ftpmaster.internal/ubuntu resolute/main arm64 libopenjp2-7 arm64 2.5.4-1 [180 kB]
217s Get:76 http://ftpmaster.internal/ubuntu resolute/main arm64 libgpgmepp6t64 arm64 1.24.2-3ubuntu2 [117 kB]
217s Get:77 http://ftpmaster.internal/ubuntu resolute/main arm64 libpoppler147 arm64 25.03.0-11.1 [1149 kB]
219s Get:78 http://ftpmaster.internal/ubuntu resolute/main arm64 libpq5 arm64 18.1-2 [151 kB]
219s Get:79 http://ftpmaster.internal/ubuntu resolute/universe arm64 libqhull-r8.0 arm64 2020.2-8 [191 kB]
219s Get:80 http://ftpmaster.internal/ubuntu resolute/universe arm64 librttopo1 arm64 1.1.0-4build1 [188 kB]
219s Get:81 http://ftpmaster.internal/ubuntu resolute/universe arm64 libspatialite8t64 arm64 5.1.0-3ubuntu1 [1816 kB]
222s Get:82 http://ftpmaster.internal/ubuntu resolute/universe arm64 libxerces-c3.2t64 arm64 3.2.4+debian-1.3build2 [913 kB]
223s Get:83 http://ftpmaster.internal/ubuntu resolute/universe arm64 libgdal38 arm64 3.12.1+dfsg-1 [10.4 MB]
241s Get:84 http://ftpmaster.internal/ubuntu resolute/main arm64 libgraphite2-3 arm64 1.3.14-11ubuntu1 [72.1 kB]
241s Get:85 http://ftpmaster.internal/ubuntu resolute/main arm64 libharfbuzz0b arm64 12.3.2-1 [510 kB]
241s Get:86 http://ftpmaster.internal/ubuntu resolute/main arm64 x11-common all 1:7.7+24ubuntu1 [22.4 kB]
241s Get:87 http://ftpmaster.internal/ubuntu resolute/main arm64 libice6 arm64 2:1.1.1-1build1 [43.0 kB]
241s Get:88 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-bootstrap all 3.4.1+dfsg-6 [129 kB]
241s Get:89 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-popper.js all 1.16.1+ds-6build1 [53.8 kB]
242s Get:90 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-bootstrap4 all 4.6.2+dfsg-1 [532 kB]
243s Get:91 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-d3 all 3.5.17-4build1 [136 kB]
243s Get:92 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB]
243s Get:93 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-highlight.js all 10.7.3+dfsg-2 [144 kB]
243s Get:94 http://ftpmaster.internal/ubuntu resolute/main arm64 libjs-jquery all 3.7.1+dfsg+~3.5.33-1build1 [321 kB]
243s Get:95 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2build1 [145 kB]
243s Get:96 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB]
243s Get:97 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-2 [3946 B]
243s Get:98 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB]
243s Get:99 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1build1 [251 kB]
243s Get:100 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-json all 0~20221030+~1.0.8-1build1 [20.6 kB]
243s Get:101 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-prettify all 2015.12.04+dfsg-3 [41.4 kB]
243s Get:102 http://ftpmaster.internal/ubuntu resolute/main arm64 liblua5.4-0 arm64 5.4.8-1 [171 kB]
243s Get:103 http://ftpmaster.internal/ubuntu resolute/main arm64 libthai-data all 0.1.30-1 [155 kB]
243s Get:104 http://ftpmaster.internal/ubuntu resolute/main arm64 libthai0 arm64 0.1.30-1 [18.3 kB]
243s Get:105 http://ftpmaster.internal/ubuntu resolute/main arm64 libpango-1.0-0 arm64 1.57.0-1 [238 kB]
243s Get:106 http://ftpmaster.internal/ubuntu resolute/main arm64 libpangoft2-1.0-0 arm64 1.57.0-1 [51.5 kB]
243s Get:107 http://ftpmaster.internal/ubuntu resolute/main arm64 libpangocairo-1.0-0 arm64 1.57.0-1 [27.9 kB]
243s Get:108 http://ftpmaster.internal/ubuntu resolute/main arm64 libpaper2 arm64 2.2.5-0.3build1 [17.3 kB]
243s Get:109 http://ftpmaster.internal/ubuntu resolute/main arm64 libpaper-utils arm64 2.2.5-0.3build1 [15.4 kB]
243s Get:110 http://ftpmaster.internal/ubuntu resolute/main arm64 libsm6 arm64 2:1.2.6-1build1 [16.8 kB]
243s Get:111 http://ftpmaster.internal/ubuntu resolute/main arm64 libtcl8.6 arm64 8.6.17+dfsg-1build1 [983 kB]
245s Get:112 http://ftpmaster.internal/ubuntu resolute/main arm64 libxft2 arm64 2.3.6-1build2 [43.2 kB]
245s Get:113 http://ftpmaster.internal/ubuntu resolute/main arm64 libxss1 arm64 1:1.2.3-1build4 [7102 B]
245s Get:114 http://ftpmaster.internal/ubuntu resolute/main arm64 libtk8.6 arm64 8.6.17-1 [811 kB]
247s Get:115 http://ftpmaster.internal/ubuntu resolute/universe arm64 libudunits2-data all 2.2.28-8 [19.3 kB]
247s Get:116 http://ftpmaster.internal/ubuntu resolute/universe arm64 libudunits2-0 arm64 2.2.28-8 [53.0 kB]
247s Get:117 http://ftpmaster.internal/ubuntu resolute/main arm64 libxt6t64 arm64 1:1.2.1-1.3 [168 kB]
247s Get:118 http://ftpmaster.internal/ubuntu resolute/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB]
247s Get:119 http://ftpmaster.internal/ubuntu resolute/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB]
247s Get:120 http://ftpmaster.internal/ubuntu resolute/universe arm64 node-normalize.css all 8.0.1-5.1 [10.4 kB]
247s Get:121 http://ftpmaster.internal/ubuntu resolute/universe arm64 pandoc-data all 3.1.11.1-3build1 [78.8 kB]
247s Get:122 http://ftpmaster.internal/ubuntu resolute/universe arm64 pandoc arm64 3.1.11.1+ds-4 [28.0 MB]
297s Get:123 http://ftpmaster.internal/ubuntu resolute/main arm64 zip arm64 3.0-15ubuntu3 [170 kB]
297s Get:124 http://ftpmaster.internal/ubuntu resolute/main arm64 unzip arm64 6.0-29ubuntu1 [176 kB]
297s Get:125 http://ftpmaster.internal/ubuntu resolute/main arm64 xdg-utils all 1.2.1-2ubuntu2 [66.1 kB]
297s Get:126 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-base-core arm64 4.5.2-1ubuntu2 [28.6 MB]
345s Get:127 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-abind all 1.4-8-1build1 [67.0 kB]
345s Get:128 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-mass arm64 7.3-65-1 [1109 kB]
348s Get:129 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-pixmap all 0.4-14-1 [217 kB]
348s Get:130 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 r-cran-lattice arm64 0.22-9-1 [1399 kB]
349s Get:131 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-sp arm64 1:2.2-0+dfsg-1 [1443 kB]
352s Get:132 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-littler arm64 0.3.22-1 [85.1 kB]
352s Get:133 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB]
352s Get:134 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rcpp arm64 1.1.0-1 [2011 kB]
356s Get:135 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rcpparmadillo arm64 15.2.3-1-1 [916 kB]
357s Get:136 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-ade4 arm64 1.7-23-1 [5381 kB]
365s Get:137 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-kernsmooth arm64 2.23-26-1build1 [93.6 kB]
365s Get:138 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-png arm64 0.1-8-1build2 [40.1 kB]
365s Get:139 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-jpeg arm64 0.1-10-1 [30.8 kB]
365s Get:140 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build2 [54.0 kB]
365s Get:141 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-deldir arm64 2.0-4-1build1 [270 kB]
365s Get:142 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-matrix arm64 1.7-4-1 [4146 kB]
372s Get:143 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rcppeigen arm64 0.3.4.0.2-1 [1422 kB]
374s Get:144 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-interp arm64 1.1-6-1 [1433 kB]
376s Get:145 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-latticeextra all 0.6-31-1 [2177 kB]
380s Get:146 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-adegraphics all 1.0-22-1 [3298 kB]
385s Get:147 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-backports arm64 1.5.0-2 [121 kB]
385s Get:148 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-base64enc arm64 0.1-3-3build1 [28.5 kB]
385s Get:149 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-boot all 1.3-32-1 [636 kB]
386s Get:150 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-cli arm64 3.6.4-1 [1374 kB]
389s Get:151 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-generics all 0.1.4-1 [84.0 kB]
389s Get:152 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-glue arm64 1.8.0-1 [163 kB]
389s Get:153 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rlang arm64 1.1.5-3 [1706 kB]
392s Get:154 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-lifecycle all 1.0.5+dfsg-1 [120 kB]
392s Get:155 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB]
392s Get:156 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB]
392s Get:157 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB]
394s Get:158 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-pillar all 1.11.1+dfsg-1 [456 kB]
394s Get:159 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-r6 all 2.6.1-1 [101 kB]
394s Get:160 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-fansi arm64 1.0.6-2 [627 kB]
395s Get:161 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-pkgconfig all 2.0.3-2build2 [20.4 kB]
395s Get:162 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-3 [420 kB]
395s Get:163 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-withr all 3.0.2+dfsg-1 [214 kB]
395s Get:164 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-tidyselect arm64 1.2.1+dfsg-1 [222 kB]
395s Get:165 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-dplyr arm64 1.1.4-4 [1534 kB]
397s Get:166 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-purrr arm64 1.0.4-1 [552 kB]
398s Get:167 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-stringi arm64 1.8.4-1build2 [901 kB]
399s Get:168 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB]
399s Get:169 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-cpp11 all 0.5.3-1 [242 kB]
399s Get:170 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-tidyr arm64 1.3.1-1 [1154 kB]
401s Get:171 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-broom all 1.0.12+dfsg-1 [1708 kB]
404s Get:172 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-fastmap arm64 1.2.0-1 [70.6 kB]
404s Get:173 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-cachem arm64 1.1.0-1 [74.1 kB]
404s Get:174 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-digest arm64 0.6.39-1 [196 kB]
404s Get:175 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-htmltools arm64 0.5.8.1-1 [373 kB]
404s Get:176 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-5 [13.7 kB]
404s Get:177 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-jsonlite arm64 1.9.1+dfsg-1 [445 kB]
404s Get:178 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-memoise all 2.0.1-1build1 [54.5 kB]
404s Get:179 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-mime arm64 0.12-2 [35.8 kB]
404s Get:180 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-fs arm64 1.6.5+dfsg-1 [244 kB]
404s Get:181 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rappdirs arm64 0.3.3-1build1 [49.5 kB]
404s Get:182 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-sass arm64 0.4.9+dfsg-1 [957 kB]
405s Get:183 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-bslib all 0.9.0+dfsg-3build1 [4560 kB]
412s Get:184 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-cardata all 3.0.6-1 [1687 kB]
415s Get:185 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-formula all 1.2-5-1 [158 kB]
415s Get:186 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-nlme arm64 3.1.168-1 [2310 kB]
418s Get:187 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-mgcv arm64 1.9-4-1 [3546 kB]
424s Get:188 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-nnet arm64 7.3-20-1 [113 kB]
424s Get:189 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-minqa arm64 1.2.8-1 [112 kB]
424s Get:190 http://ftpmaster.internal/ubuntu resolute/universe arm64 libnlopt0 arm64 2.7.1-7ubuntu1 [177 kB]
424s Get:191 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-nloptr arm64 2.2.1-2 [250 kB]
424s Get:192 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rbibutils arm64 2.3-1 [1016 kB]
425s Get:193 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rdpack all 2.6.3-1 [636 kB]
426s Get:194 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-reformulas all 0.4.4-1 [151 kB]
426s Get:195 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-statmod arm64 1.5.0-1 [294 kB]
426s Get:196 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-lme4 arm64 1.1-38-1 [4177 kB]
434s Get:197 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-numderiv all 2016.8-1.1-3build1 [116 kB]
434s Get:198 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-gtable all 0.3.6+dfsg-1 [199 kB]
434s Get:199 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-isoband arm64 0.2.7-1 [1481 kB]
436s Get:200 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-farver arm64 2.1.2-1 [1344 kB]
438s Get:201 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-labeling all 0.4.3-1 [62.1 kB]
438s Get:202 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-viridislite all 0.4.3-1 [1088 kB]
440s Get:203 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-scales all 1.4.0-1 [725 kB]
441s Get:204 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-ggplot2 all 3.5.1+dfsg-1 [3940 kB]
447s Get:205 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-cowplot all 1.1.3+dfsg-1 [614 kB]
447s Get:206 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-deriv all 4.2.0-1 [154 kB]
447s Get:207 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-colorspace arm64 2.1-1+dfsg-1 [1563 kB]
450s Get:208 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-fracdiff arm64 1.5-3-1 [108 kB]
450s Get:209 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-zoo arm64 1.8-15-1 [1025 kB]
451s Get:210 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-lmtest arm64 0.9.40-1build1 [400 kB]
451s Get:211 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-timedate arm64 4052.112-1 [1298 kB]
453s Get:212 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-quadprog arm64 1.5-8-1build2 [31.9 kB]
454s Get:213 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-xts arm64 0.14.1-1 [1189 kB]
455s Get:214 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-curl arm64 7.0.0+dfsg-1 [202 kB]
455s Get:215 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-ttr arm64 0.24.4-1 [509 kB]
455s Get:216 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-quantmod all 0.4.28-1 [1037 kB]
457s Get:217 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-tseries arm64 0.10-59-3 [381 kB]
457s Get:218 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-urca arm64 1.3-4-1build1 [1050 kB]
459s Get:219 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-forecast arm64 8.23.0-1 [1564 kB]
461s Get:220 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-modelr all 0.1.11-1 [195 kB]
461s Get:221 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-microbenchmark arm64 1.5.0-1 [67.5 kB]
461s Get:222 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-doby all 4.7.1-3 [4741 kB]
471s Get:223 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-evaluate all 1.0.5-1 [117 kB]
471s Get:224 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-xfun arm64 0.55+dfsg-1 [587 kB]
472s Get:225 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-highr all 0.11+dfsg-1 [38.5 kB]
472s Get:226 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-yaml arm64 2.3.10-1 [108 kB]
472s Get:227 http://ftpmaster.internal/ubuntu resolute/main arm64 libjs-mathjax all 2.7.9+dfsg-1build1 [6017 kB]
480s Get:228 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-knitr all 1.51+dfsg-1 [847 kB]
482s Get:229 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-pbkrtest all 0.5.5-1 [217 kB]
482s Get:230 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-sparsem arm64 1.84-2-1 [812 kB]
483s Get:231 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-matrixmodels all 0.5-4-1 [351 kB]
483s Get:232 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-survival arm64 3.8-6-1 [8270 kB]
494s Get:233 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-matrixstats arm64 1.5.0-1 [496 kB]
494s Get:234 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-class arm64 7.3-23-1 [90.5 kB]
494s Get:235 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-proxy arm64 0.4-27-1 [181 kB]
494s Get:236 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-e1071 arm64 1.7-17-1 [576 kB]
495s Get:237 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-codetools all 0.2-20-1build1 [91.1 kB]
495s Get:238 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-iterators all 1.0.14-1build1 [336 kB]
495s Get:239 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-foreach all 1.5.2-1build1 [124 kB]
495s Get:240 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-data.table arm64 1.17.0+dfsg-1 [2129 kB]
498s Get:241 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-modelmetrics arm64 1.2.2.2-1build2 [143 kB]
498s Get:242 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-plyr arm64 1.8.9-1 [831 kB]
500s Get:243 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-proc arm64 1.18.5-1 [963 kB]
501s Get:244 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-tzdb arm64 0.5.0-1 [530 kB]
502s Get:245 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-clock arm64 0.7.2-1 [1829 kB]
505s Get:246 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-gower arm64 1.0.2-1 [208 kB]
505s Get:247 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-sparsevctrs arm64 0.2.0-2 [169 kB]
505s Get:248 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-hardhat all 1.4.2+dfsg-1 [596 kB]
506s Get:249 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rpart arm64 4.1.24-1build1 [665 kB]
507s Get:250 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-shape all 1.4.6.1-1 [749 kB]
508s Get:251 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-diagram all 1.6.5-2 [656 kB]
509s Get:252 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-globals all 0.19.0-1 [160 kB]
509s Get:253 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-listenv all 0.10.0+dfsg-1 [113 kB]
509s Get:254 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-parallelly arm64 1.42.0-1 [540 kB]
510s Get:255 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-future all 1.34.0+dfsg-1 [646 kB]
511s Get:256 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-future.apply all 1.11.3+dfsg-1 [175 kB]
511s Get:257 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-progressr all 0.15.1-1 [353 kB]
511s Get:258 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-squarem all 2021.1-1build1 [180 kB]
511s Get:259 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-lava all 1.8.2+dfsg-1 [2210 kB]
515s Get:260 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-prodlim arm64 2024.06.25-1 [415 kB]
515s Get:261 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-ipred arm64 0.9-15-1 [386 kB]
515s Get:262 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-timechange arm64 0.3.0-2 [175 kB]
515s Get:263 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-lubridate arm64 1.9.4+dfsg-1 [1009 kB]
517s Get:264 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-recipes all 1.1.0+dfsg-1 [2035 kB]
520s Get:265 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-reshape2 arm64 1.4.4-2build2 [118 kB]
520s Get:266 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-caret arm64 7.0-1+dfsg-1 [3461 kB]
525s Get:267 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-conquer arm64 1.3.3-1 [440 kB]
525s Get:268 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-quantreg arm64 6.1-1 [1437 kB]
527s Get:269 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-car all 3.1-5-1 [1526 kB]
529s Get:270 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-classint arm64 0.4-11+dfsg-1 [108 kB]
529s Get:271 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-commonmark arm64 1.9.5-1 [130 kB]
529s Get:272 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-crayon all 1.5.3-1 [165 kB]
529s Get:273 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-dbi all 1.2.3-1build1 [855 kB]
530s Get:274 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-fontawesome all 0.5.3-1 [1331 kB]
533s Get:275 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-guerry all 1.8.3-1 [1230 kB]
534s Get:276 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-later arm64 1.4.1+dfsg-1 [141 kB]
534s Get:277 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-promises arm64 1.3.2+dfsg-1 [290 kB]
534s Get:278 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-httpuv arm64 1.6.15+dfsg-1 [489 kB]
534s Get:279 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-markdown all 1.13-1 [162 kB]
534s Get:280 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-tinytex all 0.58-1 [148 kB]
534s Get:281 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-modernizr all 3.13.0-0.1build1 [100 kB]
534s Get:282 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-xtable all 1:1.8-4-2build1 [691 kB]
535s Get:283 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB]
535s Get:284 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB]
535s Get:285 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB]
539s Get:286 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rmarkdown all 2.30+dfsg-1 [1501 kB]
542s Get:287 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-wk arm64 0.9.4-1 [1790 kB]
544s Get:288 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-s2 arm64 1.1.9-1build1 [1766 kB]
547s Get:289 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-units arm64 0.8-7+dfsg-2 [289 kB]
547s Get:290 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-sf arm64 1.0-19+dfsg-2build2 [3240 kB]
553s Get:291 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-spdata all 2.3.4-1 [3684 kB]
559s Get:292 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-spdep arm64 1.3-5+dfsg-1 [2168 kB]
563s Preconfiguring packages ...
563s Fetched 263 MB in 6min 28s (678 kB/s)
563s Selecting previously unselected package fonts-dejavu-mono.
563s (Reading database ... 
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563s Preparing to unpack .../000-fonts-dejavu-mono_2.37-8build1_all.deb ...
563s Unpacking fonts-dejavu-mono (2.37-8build1) ...
563s Selecting previously unselected package fonts-dejavu-core.
563s Preparing to unpack .../001-fonts-dejavu-core_2.37-8build1_all.deb ...
563s Unpacking fonts-dejavu-core (2.37-8build1) ...
563s Selecting previously unselected package fontconfig-config.
563s Preparing to unpack .../002-fontconfig-config_2.17.1-3ubuntu1_arm64.deb ...
563s Unpacking fontconfig-config (2.17.1-3ubuntu1) ...
563s Selecting previously unselected package libfontconfig1:arm64.
563s Preparing to unpack .../003-libfontconfig1_2.17.1-3ubuntu1_arm64.deb ...
563s Unpacking libfontconfig1:arm64 (2.17.1-3ubuntu1) ...
563s Selecting previously unselected package fontconfig.
563s Preparing to unpack .../004-fontconfig_2.17.1-3ubuntu1_arm64.deb ...
563s Unpacking fontconfig (2.17.1-3ubuntu1) ...
563s Selecting previously unselected package fonts-font-awesome.
564s Preparing to unpack .../005-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1build1_all.deb ...
564s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1build1) ...
564s Selecting previously unselected package fonts-glyphicons-halflings.
564s Preparing to unpack .../006-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-6_all.deb ...
564s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-6) ...
564s Selecting previously unselected package fonts-mathjax.
564s Preparing to unpack .../007-fonts-mathjax_2.7.9+dfsg-1build1_all.deb ...
564s Unpacking fonts-mathjax (2.7.9+dfsg-1build1) ...
564s Selecting previously unselected package gdal-data.
564s Preparing to unpack .../008-gdal-data_3.12.1+dfsg-1_all.deb ...
564s Unpacking gdal-data (3.12.1+dfsg-1) ...
564s Selecting previously unselected package gdal-plugins:arm64.
564s Preparing to unpack .../009-gdal-plugins_3.12.1+dfsg-1_arm64.deb ...
564s Unpacking gdal-plugins:arm64 (3.12.1+dfsg-1) ...
564s Selecting previously unselected package javascript-common.
564s Preparing to unpack .../010-javascript-common_12+nmu1build1_all.deb ...
564s Unpacking javascript-common (12+nmu1build1) ...
564s Selecting previously unselected package libabsl20260107:arm64.
564s Preparing to unpack .../011-libabsl20260107_20260107.0-1_arm64.deb ...
564s Unpacking libabsl20260107:arm64 (20260107.0-1) ...
564s Selecting previously unselected package libaec0:arm64.
564s Preparing to unpack .../012-libaec0_1.1.5-1_arm64.deb ...
564s Unpacking libaec0:arm64 (1.1.5-1) ...
564s Selecting previously unselected package libaom3:arm64.
564s Preparing to unpack .../013-libaom3_3.13.1-2_arm64.deb ...
564s Unpacking libaom3:arm64 (3.13.1-2) ...
564s Selecting previously unselected package libblas3:arm64.
564s Preparing to unpack .../014-libblas3_3.12.1-7ubuntu1_arm64.deb ...
564s Unpacking libblas3:arm64 (3.12.1-7ubuntu1) ...
564s Selecting previously unselected package libgfortran5:arm64.
564s Preparing to unpack .../015-libgfortran5_15.2.0-12ubuntu1_arm64.deb ...
564s Unpacking libgfortran5:arm64 (15.2.0-12ubuntu1) ...
564s Selecting previously unselected package liblapack3:arm64.
564s Preparing to unpack .../016-liblapack3_3.12.1-7ubuntu1_arm64.deb ...
564s Unpacking liblapack3:arm64 (3.12.1-7ubuntu1) ...
564s Selecting previously unselected package libarpack2t64:arm64.
564s Preparing to unpack .../017-libarpack2t64_3.9.1-6_arm64.deb ...
564s Unpacking libarpack2t64:arm64 (3.9.1-6) ...
564s Selecting previously unselected package libsuperlu7:arm64.
564s Preparing to unpack .../018-libsuperlu7_7.0.1+dfsg1-2_arm64.deb ...
564s Unpacking libsuperlu7:arm64 (7.0.1+dfsg1-2) ...
564s Selecting previously unselected package libarmadillo15.
564s Preparing to unpack .../019-libarmadillo15_1%3a15.2.1+dfsg-2_arm64.deb ...
564s Unpacking libarmadillo15 (1:15.2.1+dfsg-2) ...
564s Selecting previously unselected package libdav1d7:arm64.
564s Preparing to unpack .../020-libdav1d7_1.5.3-1_arm64.deb ...
564s Unpacking libdav1d7:arm64 (1.5.3-1) ...
564s Selecting previously unselected package libgav1-2:arm64.
564s Preparing to unpack .../021-libgav1-2_0.20.0-2build1_arm64.deb ...
564s Unpacking libgav1-2:arm64 (0.20.0-2build1) ...
564s Selecting previously unselected package libjpeg-turbo8:arm64.
565s Preparing to unpack .../022-libjpeg-turbo8_2.1.5-4ubuntu3_arm64.deb ...
565s Unpacking libjpeg-turbo8:arm64 (2.1.5-4ubuntu3) ...
565s Selecting previously unselected package libjpeg8:arm64.
565s Preparing to unpack .../023-libjpeg8_8c-2ubuntu11_arm64.deb ...
565s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ...
565s Selecting previously unselected package libyuv0:arm64.
565s Preparing to unpack .../024-libyuv0_0.0.1922.20260106-1_arm64.deb ...
565s Unpacking libyuv0:arm64 (0.0.1922.20260106-1) ...
565s Selecting previously unselected package libavif16:arm64.
565s Preparing to unpack .../025-libavif16_1.3.0-1ubuntu3_arm64.deb ...
565s Unpacking libavif16:arm64 (1.3.0-1ubuntu3) ...
565s Selecting previously unselected package libsnappy1v5:arm64.
565s Preparing to unpack .../026-libsnappy1v5_1.2.2-2_arm64.deb ...
565s Unpacking libsnappy1v5:arm64 (1.2.2-2) ...
565s Selecting previously unselected package libblosc1:arm64.
565s Preparing to unpack .../027-libblosc1_1.21.5+ds-2_arm64.deb ...
565s Unpacking libblosc1:arm64 (1.21.5+ds-2) ...
565s Selecting previously unselected package libpixman-1-0:arm64.
565s Preparing to unpack .../028-libpixman-1-0_0.46.4-1_arm64.deb ...
565s Unpacking libpixman-1-0:arm64 (0.46.4-1) ...
565s Selecting previously unselected package libxcb-render0:arm64.
565s Preparing to unpack .../029-libxcb-render0_1.17.0-2ubuntu1_arm64.deb ...
565s Unpacking libxcb-render0:arm64 (1.17.0-2ubuntu1) ...
565s Selecting previously unselected package libxcb-shm0:arm64.
565s Preparing to unpack .../030-libxcb-shm0_1.17.0-2ubuntu1_arm64.deb ...
565s Unpacking libxcb-shm0:arm64 (1.17.0-2ubuntu1) ...
565s Selecting previously unselected package libxrender1:arm64.
565s Preparing to unpack .../031-libxrender1_1%3a0.9.12-1_arm64.deb ...
565s Unpacking libxrender1:arm64 (1:0.9.12-1) ...
565s Selecting previously unselected package libcairo2:arm64.
565s Preparing to unpack .../032-libcairo2_1.18.4-3_arm64.deb ...
565s Unpacking libcairo2:arm64 (1.18.4-3) ...
565s Selecting previously unselected package libcfitsio10t64:arm64.
565s Preparing to unpack .../033-libcfitsio10t64_4.6.3-1_arm64.deb ...
565s Unpacking libcfitsio10t64:arm64 (4.6.3-1) ...
565s Selecting previously unselected package libdatrie1:arm64.
565s Preparing to unpack .../034-libdatrie1_0.2.14-1_arm64.deb ...
565s Unpacking libdatrie1:arm64 (0.2.14-1) ...
565s Selecting previously unselected package libde265-0:arm64.
565s Preparing to unpack .../035-libde265-0_1.0.16-1build1_arm64.deb ...
565s Unpacking libde265-0:arm64 (1.0.16-1build1) ...
565s Selecting previously unselected package libdeflate0:arm64.
565s Preparing to unpack .../036-libdeflate0_1.23-2build1_arm64.deb ...
565s Unpacking libdeflate0:arm64 (1.23-2build1) ...
565s Selecting previously unselected package libfyba0t64:arm64.
565s Preparing to unpack .../037-libfyba0t64_4.1.1-11build2_arm64.deb ...
565s Unpacking libfyba0t64:arm64 (4.1.1-11build2) ...
565s Selecting previously unselected package libminizip1t64:arm64.
565s Preparing to unpack .../038-libminizip1t64_1%3a1.3.dfsg+really1.3.1-1ubuntu2_arm64.deb ...
565s Unpacking libminizip1t64:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu2) ...
565s Selecting previously unselected package libfreexl1:arm64.
565s Preparing to unpack .../039-libfreexl1_2.0.0-1build3_arm64.deb ...
565s Unpacking libfreexl1:arm64 (2.0.0-1build3) ...
565s Selecting previously unselected package libgeos3.14.1:arm64.
565s Preparing to unpack .../040-libgeos3.14.1_3.14.1-2_arm64.deb ...
565s Unpacking libgeos3.14.1:arm64 (3.14.1-2) ...
565s Selecting previously unselected package libgeos-c1t64:arm64.
565s Preparing to unpack .../041-libgeos-c1t64_3.14.1-2_arm64.deb ...
565s Unpacking libgeos-c1t64:arm64 (3.14.1-2) ...
565s Selecting previously unselected package proj-data.
565s Preparing to unpack .../042-proj-data_9.7.1-1_all.deb ...
565s Unpacking proj-data (9.7.1-1) ...
566s Selecting previously unselected package libjbig0:arm64.
566s Preparing to unpack .../043-libjbig0_2.1-6.1ubuntu3_arm64.deb ...
566s Unpacking libjbig0:arm64 (2.1-6.1ubuntu3) ...
566s Selecting previously unselected package liblerc4:arm64.
566s Preparing to unpack .../044-liblerc4_4.0.0+ds-5ubuntu2_arm64.deb ...
566s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu2) ...
566s Selecting previously unselected package libsharpyuv0:arm64.
566s Preparing to unpack .../045-libsharpyuv0_1.5.0-0.1build1_arm64.deb ...
566s Unpacking libsharpyuv0:arm64 (1.5.0-0.1build1) ...
566s Selecting previously unselected package libwebp7:arm64.
566s Preparing to unpack .../046-libwebp7_1.5.0-0.1build1_arm64.deb ...
566s Unpacking libwebp7:arm64 (1.5.0-0.1build1) ...
566s Selecting previously unselected package libtiff6:arm64.
566s Preparing to unpack .../047-libtiff6_4.7.0-3ubuntu3_arm64.deb ...
566s Unpacking libtiff6:arm64 (4.7.0-3ubuntu3) ...
566s Selecting previously unselected package libproj25:arm64.
566s Preparing to unpack .../048-libproj25_9.7.1-1_arm64.deb ...
566s Unpacking libproj25:arm64 (9.7.1-1) ...
566s Selecting previously unselected package libgeotiff5:arm64.
566s Preparing to unpack .../049-libgeotiff5_1.7.4-1build1_arm64.deb ...
566s Unpacking libgeotiff5:arm64 (1.7.4-1build1) ...
566s Selecting previously unselected package libgif7:arm64.
566s Preparing to unpack .../050-libgif7_5.2.2-1ubuntu3_arm64.deb ...
566s Unpacking libgif7:arm64 (5.2.2-1ubuntu3) ...
566s Selecting previously unselected package libsz2:arm64.
566s Preparing to unpack .../051-libsz2_1.1.5-1_arm64.deb ...
566s Unpacking libsz2:arm64 (1.1.5-1) ...
566s Selecting previously unselected package libhdf4-0:arm64.
566s Preparing to unpack .../052-libhdf4-0_4.3.1-2_arm64.deb ...
566s Unpacking libhdf4-0:arm64 (4.3.1-2) ...
566s Selecting previously unselected package libhdf5-310:arm64.
566s Preparing to unpack .../053-libhdf5-310_1.14.6+repack-2_arm64.deb ...
566s Unpacking libhdf5-310:arm64 (1.14.6+repack-2) ...
566s Selecting previously unselected package libheif-plugin-aomdec:arm64.
566s Preparing to unpack .../054-libheif-plugin-aomdec_1.21.2-1_arm64.deb ...
566s Unpacking libheif-plugin-aomdec:arm64 (1.21.2-1) ...
566s Selecting previously unselected package libheif-plugin-libde265:arm64.
566s Preparing to unpack .../055-libheif-plugin-libde265_1.21.2-1_arm64.deb ...
566s Unpacking libheif-plugin-libde265:arm64 (1.21.2-1) ...
566s Selecting previously unselected package libheif1:arm64.
566s Preparing to unpack .../056-libheif1_1.21.2-1_arm64.deb ...
566s Unpacking libheif1:arm64 (1.21.2-1) ...
566s Selecting previously unselected package libhwy1t64:arm64.
566s Preparing to unpack .../057-libhwy1t64_1.3.0-2_arm64.deb ...
566s Unpacking libhwy1t64:arm64 (1.3.0-2) ...
566s Selecting previously unselected package liblcms2-2:arm64.
566s Preparing to unpack .../058-liblcms2-2_2.17-1_arm64.deb ...
566s Unpacking liblcms2-2:arm64 (2.17-1) ...
566s Selecting previously unselected package libjxl0.11:arm64.
566s Preparing to unpack .../059-libjxl0.11_0.11.1-6ubuntu1_arm64.deb ...
566s Unpacking libjxl0.11:arm64 (0.11.1-6ubuntu1) ...
566s Selecting previously unselected package liburiparser1:arm64.
566s Preparing to unpack .../060-liburiparser1_0.9.8+dfsg-2_arm64.deb ...
566s Unpacking liburiparser1:arm64 (0.9.8+dfsg-2) ...
566s Selecting previously unselected package libkmlbase1t64:arm64.
566s Preparing to unpack .../061-libkmlbase1t64_1.3.0-13_arm64.deb ...
566s Unpacking libkmlbase1t64:arm64 (1.3.0-13) ...
566s Selecting previously unselected package libkmldom1t64:arm64.
567s Preparing to unpack .../062-libkmldom1t64_1.3.0-13_arm64.deb ...
567s Unpacking libkmldom1t64:arm64 (1.3.0-13) ...
567s Selecting previously unselected package libkmlengine1t64:arm64.
567s Preparing to unpack .../063-libkmlengine1t64_1.3.0-13_arm64.deb ...
567s Unpacking libkmlengine1t64:arm64 (1.3.0-13) ...
567s Selecting previously unselected package libgomp1:arm64.
567s Preparing to unpack .../064-libgomp1_15.2.0-12ubuntu1_arm64.deb ...
567s Unpacking libgomp1:arm64 (15.2.0-12ubuntu1) ...
567s Selecting previously unselected package libmuparser2v5:arm64.
567s Preparing to unpack .../065-libmuparser2v5_2.3.4-2_arm64.deb ...
567s Unpacking libmuparser2v5:arm64 (2.3.4-2) ...
567s Selecting previously unselected package mysql-common.
567s Preparing to unpack .../066-mysql-common_5.8+1.1.1ubuntu2_all.deb ...
567s Unpacking mysql-common (5.8+1.1.1ubuntu2) ...
567s Selecting previously unselected package libmysqlclient24:arm64.
567s Preparing to unpack .../067-libmysqlclient24_8.4.8-0ubuntu1_arm64.deb ...
567s Unpacking libmysqlclient24:arm64 (8.4.8-0ubuntu1) ...
567s Selecting previously unselected package libhdf5-hl-310:arm64.
567s Preparing to unpack .../068-libhdf5-hl-310_1.14.6+repack-2_arm64.deb ...
567s Unpacking libhdf5-hl-310:arm64 (1.14.6+repack-2) ...
567s Selecting previously unselected package libnetcdf22:arm64.
567s Preparing to unpack .../069-libnetcdf22_1%3a4.9.3-1build1_arm64.deb ...
567s Unpacking libnetcdf22:arm64 (1:4.9.3-1build1) ...
567s Selecting previously unselected package libltdl7:arm64.
567s Preparing to unpack .../070-libltdl7_2.5.4-9_arm64.deb ...
567s Unpacking libltdl7:arm64 (2.5.4-9) ...
567s Selecting previously unselected package libodbc2:arm64.
567s Preparing to unpack .../071-libodbc2_2.3.14-1_arm64.deb ...
567s Unpacking libodbc2:arm64 (2.3.14-1) ...
567s Selecting previously unselected package unixodbc-common.
567s Preparing to unpack .../072-unixodbc-common_2.3.14-1_all.deb ...
567s Unpacking unixodbc-common (2.3.14-1) ...
567s Selecting previously unselected package libodbcinst2:arm64.
567s Preparing to unpack .../073-libodbcinst2_2.3.14-1_arm64.deb ...
567s Unpacking libodbcinst2:arm64 (2.3.14-1) ...
567s Selecting previously unselected package libopenjp2-7:arm64.
567s Preparing to unpack .../074-libopenjp2-7_2.5.4-1_arm64.deb ...
567s Unpacking libopenjp2-7:arm64 (2.5.4-1) ...
567s Selecting previously unselected package libgpgmepp6t64:arm64.
567s Preparing to unpack .../075-libgpgmepp6t64_1.24.2-3ubuntu2_arm64.deb ...
567s Unpacking libgpgmepp6t64:arm64 (1.24.2-3ubuntu2) ...
567s Selecting previously unselected package libpoppler147:arm64.
567s Preparing to unpack .../076-libpoppler147_25.03.0-11.1_arm64.deb ...
567s Unpacking libpoppler147:arm64 (25.03.0-11.1) ...
567s Selecting previously unselected package libpq5:arm64.
567s Preparing to unpack .../077-libpq5_18.1-2_arm64.deb ...
567s Unpacking libpq5:arm64 (18.1-2) ...
567s Selecting previously unselected package libqhull-r8.0:arm64.
567s Preparing to unpack .../078-libqhull-r8.0_2020.2-8_arm64.deb ...
567s Unpacking libqhull-r8.0:arm64 (2020.2-8) ...
567s Selecting previously unselected package librttopo1:arm64.
567s Preparing to unpack .../079-librttopo1_1.1.0-4build1_arm64.deb ...
567s Unpacking librttopo1:arm64 (1.1.0-4build1) ...
567s Selecting previously unselected package libspatialite8t64:arm64.
567s Preparing to unpack .../080-libspatialite8t64_5.1.0-3ubuntu1_arm64.deb ...
567s Unpacking libspatialite8t64:arm64 (5.1.0-3ubuntu1) ...
567s Selecting previously unselected package libxerces-c3.2t64:arm64.
567s Preparing to unpack .../081-libxerces-c3.2t64_3.2.4+debian-1.3build2_arm64.deb ...
567s Unpacking libxerces-c3.2t64:arm64 (3.2.4+debian-1.3build2) ...
567s Selecting previously unselected package libgdal38:arm64.
567s Preparing to unpack .../082-libgdal38_3.12.1+dfsg-1_arm64.deb ...
567s Unpacking libgdal38:arm64 (3.12.1+dfsg-1) ...
568s Selecting previously unselected package libgraphite2-3:arm64.
568s Preparing to unpack .../083-libgraphite2-3_1.3.14-11ubuntu1_arm64.deb ...
568s Unpacking libgraphite2-3:arm64 (1.3.14-11ubuntu1) ...
568s Selecting previously unselected package libharfbuzz0b:arm64.
568s Preparing to unpack .../084-libharfbuzz0b_12.3.2-1_arm64.deb ...
568s Unpacking libharfbuzz0b:arm64 (12.3.2-1) ...
568s Selecting previously unselected package x11-common.
568s Preparing to unpack .../085-x11-common_1%3a7.7+24ubuntu1_all.deb ...
568s Unpacking x11-common (1:7.7+24ubuntu1) ...
568s Selecting previously unselected package libice6:arm64.
568s Preparing to unpack .../086-libice6_2%3a1.1.1-1build1_arm64.deb ...
568s Unpacking libice6:arm64 (2:1.1.1-1build1) ...
568s Selecting previously unselected package libjs-bootstrap.
568s Preparing to unpack .../087-libjs-bootstrap_3.4.1+dfsg-6_all.deb ...
568s Unpacking libjs-bootstrap (3.4.1+dfsg-6) ...
568s Selecting previously unselected package libjs-popper.js.
568s Preparing to unpack .../088-libjs-popper.js_1.16.1+ds-6build1_all.deb ...
568s Unpacking libjs-popper.js (1.16.1+ds-6build1) ...
568s Selecting previously unselected package libjs-bootstrap4.
568s Preparing to unpack .../089-libjs-bootstrap4_4.6.2+dfsg-1_all.deb ...
568s Unpacking libjs-bootstrap4 (4.6.2+dfsg-1) ...
568s Selecting previously unselected package libjs-d3.
568s Preparing to unpack .../090-libjs-d3_3.5.17-4build1_all.deb ...
568s Unpacking libjs-d3 (3.5.17-4build1) ...
568s Selecting previously unselected package libjs-es5-shim.
568s Preparing to unpack .../091-libjs-es5-shim_4.6.7-2_all.deb ...
568s Unpacking libjs-es5-shim (4.6.7-2) ...
568s Selecting previously unselected package libjs-highlight.js.
568s Preparing to unpack .../092-libjs-highlight.js_10.7.3+dfsg-2_all.deb ...
568s Unpacking libjs-highlight.js (10.7.3+dfsg-2) ...
568s Selecting previously unselected package libjs-jquery.
568s Preparing to unpack .../093-libjs-jquery_3.7.1+dfsg+~3.5.33-1build1_all.deb ...
568s Unpacking libjs-jquery (3.7.1+dfsg+~3.5.33-1build1) ...
568s Selecting previously unselected package libjs-jquery-datatables.
568s Preparing to unpack .../094-libjs-jquery-datatables_1.11.5+dfsg-2build1_all.deb ...
568s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2build1) ...
568s Selecting previously unselected package libjs-sifter.js.
568s Preparing to unpack .../095-libjs-sifter.js_0.6.0+dfsg-3_all.deb ...
568s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ...
568s Selecting previously unselected package libjs-microplugin.js.
568s Preparing to unpack .../096-libjs-microplugin.js_0.0.3+dfsg-2_all.deb ...
568s Unpacking libjs-microplugin.js (0.0.3+dfsg-2) ...
568s Selecting previously unselected package libjs-jquery-selectize.js.
568s Preparing to unpack .../097-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ...
568s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ...
568s Selecting previously unselected package libjs-jquery-ui.
568s Preparing to unpack .../098-libjs-jquery-ui_1.13.2+dfsg-1build1_all.deb ...
568s Unpacking libjs-jquery-ui (1.13.2+dfsg-1build1) ...
569s Selecting previously unselected package libjs-json.
569s Preparing to unpack .../099-libjs-json_0~20221030+~1.0.8-1build1_all.deb ...
569s Unpacking libjs-json (0~20221030+~1.0.8-1build1) ...
569s Selecting previously unselected package libjs-prettify.
569s Preparing to unpack .../100-libjs-prettify_2015.12.04+dfsg-3_all.deb ...
569s Unpacking libjs-prettify (2015.12.04+dfsg-3) ...
569s Selecting previously unselected package liblua5.4-0:arm64.
569s Preparing to unpack .../101-liblua5.4-0_5.4.8-1_arm64.deb ...
569s Unpacking liblua5.4-0:arm64 (5.4.8-1) ...
569s Selecting previously unselected package libthai-data.
569s Preparing to unpack .../102-libthai-data_0.1.30-1_all.deb ...
569s Unpacking libthai-data (0.1.30-1) ...
569s Selecting previously unselected package libthai0:arm64.
569s Preparing to unpack .../103-libthai0_0.1.30-1_arm64.deb ...
569s Unpacking libthai0:arm64 (0.1.30-1) ...
569s Selecting previously unselected package libpango-1.0-0:arm64.
569s Preparing to unpack .../104-libpango-1.0-0_1.57.0-1_arm64.deb ...
569s Unpacking libpango-1.0-0:arm64 (1.57.0-1) ...
569s Selecting previously unselected package libpangoft2-1.0-0:arm64.
569s Preparing to unpack .../105-libpangoft2-1.0-0_1.57.0-1_arm64.deb ...
569s Unpacking libpangoft2-1.0-0:arm64 (1.57.0-1) ...
569s Selecting previously unselected package libpangocairo-1.0-0:arm64.
569s Preparing to unpack .../106-libpangocairo-1.0-0_1.57.0-1_arm64.deb ...
569s Unpacking libpangocairo-1.0-0:arm64 (1.57.0-1) ...
569s Selecting previously unselected package libpaper2:arm64.
569s Preparing to unpack .../107-libpaper2_2.2.5-0.3build1_arm64.deb ...
569s Unpacking libpaper2:arm64 (2.2.5-0.3build1) ...
569s Selecting previously unselected package libpaper-utils.
569s Preparing to unpack .../108-libpaper-utils_2.2.5-0.3build1_arm64.deb ...
569s Unpacking libpaper-utils (2.2.5-0.3build1) ...
569s Selecting previously unselected package libsm6:arm64.
569s Preparing to unpack .../109-libsm6_2%3a1.2.6-1build1_arm64.deb ...
569s Unpacking libsm6:arm64 (2:1.2.6-1build1) ...
569s Selecting previously unselected package libtcl8.6:arm64.
569s Preparing to unpack .../110-libtcl8.6_8.6.17+dfsg-1build1_arm64.deb ...
569s Unpacking libtcl8.6:arm64 (8.6.17+dfsg-1build1) ...
569s Selecting previously unselected package libxft2:arm64.
569s Preparing to unpack .../111-libxft2_2.3.6-1build2_arm64.deb ...
569s Unpacking libxft2:arm64 (2.3.6-1build2) ...
569s Selecting previously unselected package libxss1:arm64.
569s Preparing to unpack .../112-libxss1_1%3a1.2.3-1build4_arm64.deb ...
569s Unpacking libxss1:arm64 (1:1.2.3-1build4) ...
569s Selecting previously unselected package libtk8.6:arm64.
569s Preparing to unpack .../113-libtk8.6_8.6.17-1_arm64.deb ...
569s Unpacking libtk8.6:arm64 (8.6.17-1) ...
569s Selecting previously unselected package libudunits2-data.
569s Preparing to unpack .../114-libudunits2-data_2.2.28-8_all.deb ...
569s Unpacking libudunits2-data (2.2.28-8) ...
569s Selecting previously unselected package libudunits2-0:arm64.
569s Preparing to unpack .../115-libudunits2-0_2.2.28-8_arm64.deb ...
569s Unpacking libudunits2-0:arm64 (2.2.28-8) ...
569s Selecting previously unselected package libxt6t64:arm64.
569s Preparing to unpack .../116-libxt6t64_1%3a1.2.1-1.3_arm64.deb ...
569s Unpacking libxt6t64:arm64 (1:1.2.1-1.3) ...
569s Selecting previously unselected package node-bootstrap-sass.
569s Preparing to unpack .../117-node-bootstrap-sass_3.4.3-2_all.deb ...
569s Unpacking node-bootstrap-sass (3.4.3-2) ...
569s Selecting previously unselected package node-html5shiv.
569s Preparing to unpack .../118-node-html5shiv_3.7.3+dfsg-5_all.deb ...
569s Unpacking node-html5shiv (3.7.3+dfsg-5) ...
569s Selecting previously unselected package node-normalize.css.
569s Preparing to unpack .../119-node-normalize.css_8.0.1-5.1_all.deb ...
569s Unpacking node-normalize.css (8.0.1-5.1) ...
569s Selecting previously unselected package pandoc-data.
570s Preparing to unpack .../120-pandoc-data_3.1.11.1-3build1_all.deb ...
570s Unpacking pandoc-data (3.1.11.1-3build1) ...
570s Selecting previously unselected package pandoc.
570s Preparing to unpack .../121-pandoc_3.1.11.1+ds-4_arm64.deb ...
570s Unpacking pandoc (3.1.11.1+ds-4) ...
570s Selecting previously unselected package zip.
570s Preparing to unpack .../122-zip_3.0-15ubuntu3_arm64.deb ...
570s Unpacking zip (3.0-15ubuntu3) ...
570s Selecting previously unselected package unzip.
570s Preparing to unpack .../123-unzip_6.0-29ubuntu1_arm64.deb ...
570s Unpacking unzip (6.0-29ubuntu1) ...
570s Selecting previously unselected package xdg-utils.
570s Preparing to unpack .../124-xdg-utils_1.2.1-2ubuntu2_all.deb ...
570s Unpacking xdg-utils (1.2.1-2ubuntu2) ...
571s Selecting previously unselected package r-base-core.
571s Preparing to unpack .../125-r-base-core_4.5.2-1ubuntu2_arm64.deb ...
571s Unpacking r-base-core (4.5.2-1ubuntu2) ...
571s Selecting previously unselected package r-cran-abind.
571s Preparing to unpack .../126-r-cran-abind_1.4-8-1build1_all.deb ...
571s Unpacking r-cran-abind (1.4-8-1build1) ...
571s Selecting previously unselected package r-cran-mass.
571s Preparing to unpack .../127-r-cran-mass_7.3-65-1_arm64.deb ...
571s Unpacking r-cran-mass (7.3-65-1) ...
571s Selecting previously unselected package r-cran-pixmap.
571s Preparing to unpack .../128-r-cran-pixmap_0.4-14-1_all.deb ...
571s Unpacking r-cran-pixmap (0.4-14-1) ...
571s Selecting previously unselected package r-cran-lattice.
571s Preparing to unpack .../129-r-cran-lattice_0.22-9-1_arm64.deb ...
571s Unpacking r-cran-lattice (0.22-9-1) ...
571s Selecting previously unselected package r-cran-sp.
571s Preparing to unpack .../130-r-cran-sp_1%3a2.2-0+dfsg-1_arm64.deb ...
571s Unpacking r-cran-sp (1:2.2-0+dfsg-1) ...
571s Selecting previously unselected package r-cran-littler.
571s Preparing to unpack .../131-r-cran-littler_0.3.22-1_arm64.deb ...
571s Unpacking r-cran-littler (0.3.22-1) ...
571s Selecting previously unselected package r-cran-pkgkitten.
571s Preparing to unpack .../132-r-cran-pkgkitten_0.2.4-1_all.deb ...
571s Unpacking r-cran-pkgkitten (0.2.4-1) ...
571s Selecting previously unselected package r-cran-rcpp.
571s Preparing to unpack .../133-r-cran-rcpp_1.1.0-1_arm64.deb ...
571s Unpacking r-cran-rcpp (1.1.0-1) ...
571s Selecting previously unselected package r-cran-rcpparmadillo.
571s Preparing to unpack .../134-r-cran-rcpparmadillo_15.2.3-1-1_arm64.deb ...
571s Unpacking r-cran-rcpparmadillo (15.2.3-1-1) ...
571s Selecting previously unselected package r-cran-ade4.
571s Preparing to unpack .../135-r-cran-ade4_1.7-23-1_arm64.deb ...
571s Unpacking r-cran-ade4 (1.7-23-1) ...
571s Selecting previously unselected package r-cran-kernsmooth.
571s Preparing to unpack .../136-r-cran-kernsmooth_2.23-26-1build1_arm64.deb ...
571s Unpacking r-cran-kernsmooth (2.23-26-1build1) ...
571s Selecting previously unselected package r-cran-png.
572s Preparing to unpack .../137-r-cran-png_0.1-8-1build2_arm64.deb ...
572s Unpacking r-cran-png (0.1-8-1build2) ...
572s Selecting previously unselected package r-cran-jpeg.
572s Preparing to unpack .../138-r-cran-jpeg_0.1-10-1_arm64.deb ...
572s Unpacking r-cran-jpeg (0.1-10-1) ...
572s Selecting previously unselected package r-cran-rcolorbrewer.
572s Preparing to unpack .../139-r-cran-rcolorbrewer_1.1-3-1build2_all.deb ...
572s Unpacking r-cran-rcolorbrewer (1.1-3-1build2) ...
572s Selecting previously unselected package r-cran-deldir.
572s Preparing to unpack .../140-r-cran-deldir_2.0-4-1build1_arm64.deb ...
572s Unpacking r-cran-deldir (2.0-4-1build1) ...
572s Selecting previously unselected package r-cran-matrix.
572s Preparing to unpack .../141-r-cran-matrix_1.7-4-1_arm64.deb ...
572s Unpacking r-cran-matrix (1.7-4-1) ...
572s Selecting previously unselected package r-cran-rcppeigen.
572s Preparing to unpack .../142-r-cran-rcppeigen_0.3.4.0.2-1_arm64.deb ...
572s Unpacking r-cran-rcppeigen (0.3.4.0.2-1) ...
572s Selecting previously unselected package r-cran-interp.
572s Preparing to unpack .../143-r-cran-interp_1.1-6-1_arm64.deb ...
572s Unpacking r-cran-interp (1.1-6-1) ...
572s Selecting previously unselected package r-cran-latticeextra.
572s Preparing to unpack .../144-r-cran-latticeextra_0.6-31-1_all.deb ...
572s Unpacking r-cran-latticeextra (0.6-31-1) ...
572s Selecting previously unselected package r-cran-adegraphics.
572s Preparing to unpack .../145-r-cran-adegraphics_1.0-22-1_all.deb ...
572s Unpacking r-cran-adegraphics (1.0-22-1) ...
572s Selecting previously unselected package r-cran-backports.
572s Preparing to unpack .../146-r-cran-backports_1.5.0-2_arm64.deb ...
572s Unpacking r-cran-backports (1.5.0-2) ...
572s Selecting previously unselected package r-cran-base64enc.
572s Preparing to unpack .../147-r-cran-base64enc_0.1-3-3build1_arm64.deb ...
572s Unpacking r-cran-base64enc (0.1-3-3build1) ...
572s Selecting previously unselected package r-cran-boot.
572s Preparing to unpack .../148-r-cran-boot_1.3-32-1_all.deb ...
572s Unpacking r-cran-boot (1.3-32-1) ...
572s Selecting previously unselected package r-cran-cli.
572s Preparing to unpack .../149-r-cran-cli_3.6.4-1_arm64.deb ...
572s Unpacking r-cran-cli (3.6.4-1) ...
572s Selecting previously unselected package r-cran-generics.
572s Preparing to unpack .../150-r-cran-generics_0.1.4-1_all.deb ...
572s Unpacking r-cran-generics (0.1.4-1) ...
572s Selecting previously unselected package r-cran-glue.
572s Preparing to unpack .../151-r-cran-glue_1.8.0-1_arm64.deb ...
572s Unpacking r-cran-glue (1.8.0-1) ...
572s Selecting previously unselected package r-cran-rlang.
572s Preparing to unpack .../152-r-cran-rlang_1.1.5-3_arm64.deb ...
572s Unpacking r-cran-rlang (1.1.5-3) ...
572s Selecting previously unselected package r-cran-lifecycle.
572s Preparing to unpack .../153-r-cran-lifecycle_1.0.5+dfsg-1_all.deb ...
572s Unpacking r-cran-lifecycle (1.0.5+dfsg-1) ...
572s Selecting previously unselected package r-cran-magrittr.
572s Preparing to unpack .../154-r-cran-magrittr_2.0.3-1_arm64.deb ...
572s Unpacking r-cran-magrittr (2.0.3-1) ...
572s Selecting previously unselected package r-cran-utf8.
572s Preparing to unpack .../155-r-cran-utf8_1.2.4-1_arm64.deb ...
572s Unpacking r-cran-utf8 (1.2.4-1) ...
573s Selecting previously unselected package r-cran-vctrs.
573s Preparing to unpack .../156-r-cran-vctrs_0.6.5-1_arm64.deb ...
573s Unpacking r-cran-vctrs (0.6.5-1) ...
573s Selecting previously unselected package r-cran-pillar.
573s Preparing to unpack .../157-r-cran-pillar_1.11.1+dfsg-1_all.deb ...
573s Unpacking r-cran-pillar (1.11.1+dfsg-1) ...
573s Selecting previously unselected package r-cran-r6.
573s Preparing to unpack .../158-r-cran-r6_2.6.1-1_all.deb ...
573s Unpacking r-cran-r6 (2.6.1-1) ...
573s Selecting previously unselected package r-cran-fansi.
573s Preparing to unpack .../159-r-cran-fansi_1.0.6-2_arm64.deb ...
573s Unpacking r-cran-fansi (1.0.6-2) ...
573s Selecting previously unselected package r-cran-pkgconfig.
573s Preparing to unpack .../160-r-cran-pkgconfig_2.0.3-2build2_all.deb ...
573s Unpacking r-cran-pkgconfig (2.0.3-2build2) ...
573s Selecting previously unselected package r-cran-tibble.
573s Preparing to unpack .../161-r-cran-tibble_3.2.1+dfsg-3_arm64.deb ...
573s Unpacking r-cran-tibble (3.2.1+dfsg-3) ...
573s Selecting previously unselected package r-cran-withr.
573s Preparing to unpack .../162-r-cran-withr_3.0.2+dfsg-1_all.deb ...
573s Unpacking r-cran-withr (3.0.2+dfsg-1) ...
573s Selecting previously unselected package r-cran-tidyselect.
573s Preparing to unpack .../163-r-cran-tidyselect_1.2.1+dfsg-1_arm64.deb ...
573s Unpacking r-cran-tidyselect (1.2.1+dfsg-1) ...
573s Selecting previously unselected package r-cran-dplyr.
573s Preparing to unpack .../164-r-cran-dplyr_1.1.4-4_arm64.deb ...
573s Unpacking r-cran-dplyr (1.1.4-4) ...
573s Selecting previously unselected package r-cran-purrr.
573s Preparing to unpack .../165-r-cran-purrr_1.0.4-1_arm64.deb ...
573s Unpacking r-cran-purrr (1.0.4-1) ...
573s Selecting previously unselected package r-cran-stringi.
573s Preparing to unpack .../166-r-cran-stringi_1.8.4-1build2_arm64.deb ...
573s Unpacking r-cran-stringi (1.8.4-1build2) ...
573s Selecting previously unselected package r-cran-stringr.
573s Preparing to unpack .../167-r-cran-stringr_1.5.1-1_all.deb ...
573s Unpacking r-cran-stringr (1.5.1-1) ...
573s Selecting previously unselected package r-cran-cpp11.
573s Preparing to unpack .../168-r-cran-cpp11_0.5.3-1_all.deb ...
573s Unpacking r-cran-cpp11 (0.5.3-1) ...
573s Selecting previously unselected package r-cran-tidyr.
573s Preparing to unpack .../169-r-cran-tidyr_1.3.1-1_arm64.deb ...
573s Unpacking r-cran-tidyr (1.3.1-1) ...
573s Selecting previously unselected package r-cran-broom.
573s Preparing to unpack .../170-r-cran-broom_1.0.12+dfsg-1_all.deb ...
573s Unpacking r-cran-broom (1.0.12+dfsg-1) ...
573s Selecting previously unselected package r-cran-fastmap.
573s Preparing to unpack .../171-r-cran-fastmap_1.2.0-1_arm64.deb ...
573s Unpacking r-cran-fastmap (1.2.0-1) ...
573s Selecting previously unselected package r-cran-cachem.
573s Preparing to unpack .../172-r-cran-cachem_1.1.0-1_arm64.deb ...
573s Unpacking r-cran-cachem (1.1.0-1) ...
573s Selecting previously unselected package r-cran-digest.
573s Preparing to unpack .../173-r-cran-digest_0.6.39-1_arm64.deb ...
573s Unpacking r-cran-digest (0.6.39-1) ...
573s Selecting previously unselected package r-cran-htmltools.
573s Preparing to unpack .../174-r-cran-htmltools_0.5.8.1-1_arm64.deb ...
573s Unpacking r-cran-htmltools (0.5.8.1-1) ...
573s Selecting previously unselected package r-cran-jquerylib.
573s Preparing to unpack .../175-r-cran-jquerylib_0.1.4+dfsg-5_all.deb ...
573s Unpacking r-cran-jquerylib (0.1.4+dfsg-5) ...
574s Selecting previously unselected package r-cran-jsonlite.
574s Preparing to unpack .../176-r-cran-jsonlite_1.9.1+dfsg-1_arm64.deb ...
574s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ...
574s Selecting previously unselected package r-cran-memoise.
574s Preparing to unpack .../177-r-cran-memoise_2.0.1-1build1_all.deb ...
574s Unpacking r-cran-memoise (2.0.1-1build1) ...
574s Selecting previously unselected package r-cran-mime.
574s Preparing to unpack .../178-r-cran-mime_0.12-2_arm64.deb ...
574s Unpacking r-cran-mime (0.12-2) ...
574s Selecting previously unselected package r-cran-fs.
574s Preparing to unpack .../179-r-cran-fs_1.6.5+dfsg-1_arm64.deb ...
574s Unpacking r-cran-fs (1.6.5+dfsg-1) ...
574s Selecting previously unselected package r-cran-rappdirs.
574s Preparing to unpack .../180-r-cran-rappdirs_0.3.3-1build1_arm64.deb ...
574s Unpacking r-cran-rappdirs (0.3.3-1build1) ...
574s Selecting previously unselected package r-cran-sass.
574s Preparing to unpack .../181-r-cran-sass_0.4.9+dfsg-1_arm64.deb ...
574s Unpacking r-cran-sass (0.4.9+dfsg-1) ...
574s Selecting previously unselected package r-cran-bslib.
574s Preparing to unpack .../182-r-cran-bslib_0.9.0+dfsg-3build1_all.deb ...
574s Unpacking r-cran-bslib (0.9.0+dfsg-3build1) ...
574s Selecting previously unselected package r-cran-cardata.
574s Preparing to unpack .../183-r-cran-cardata_3.0.6-1_all.deb ...
574s Unpacking r-cran-cardata (3.0.6-1) ...
574s Selecting previously unselected package r-cran-formula.
574s Preparing to unpack .../184-r-cran-formula_1.2-5-1_all.deb ...
574s Unpacking r-cran-formula (1.2-5-1) ...
574s Selecting previously unselected package r-cran-nlme.
574s Preparing to unpack .../185-r-cran-nlme_3.1.168-1_arm64.deb ...
574s Unpacking r-cran-nlme (3.1.168-1) ...
574s Selecting previously unselected package r-cran-mgcv.
575s Preparing to unpack .../186-r-cran-mgcv_1.9-4-1_arm64.deb ...
575s Unpacking r-cran-mgcv (1.9-4-1) ...
575s Selecting previously unselected package r-cran-nnet.
575s Preparing to unpack .../187-r-cran-nnet_7.3-20-1_arm64.deb ...
575s Unpacking r-cran-nnet (7.3-20-1) ...
575s Selecting previously unselected package r-cran-minqa.
575s Preparing to unpack .../188-r-cran-minqa_1.2.8-1_arm64.deb ...
575s Unpacking r-cran-minqa (1.2.8-1) ...
575s Selecting previously unselected package libnlopt0:arm64.
575s Preparing to unpack .../189-libnlopt0_2.7.1-7ubuntu1_arm64.deb ...
575s Unpacking libnlopt0:arm64 (2.7.1-7ubuntu1) ...
575s Selecting previously unselected package r-cran-nloptr.
575s Preparing to unpack .../190-r-cran-nloptr_2.2.1-2_arm64.deb ...
575s Unpacking r-cran-nloptr (2.2.1-2) ...
575s Selecting previously unselected package r-cran-rbibutils.
575s Preparing to unpack .../191-r-cran-rbibutils_2.3-1_arm64.deb ...
575s Unpacking r-cran-rbibutils (2.3-1) ...
575s Selecting previously unselected package r-cran-rdpack.
575s Preparing to unpack .../192-r-cran-rdpack_2.6.3-1_all.deb ...
575s Unpacking r-cran-rdpack (2.6.3-1) ...
575s Selecting previously unselected package r-cran-reformulas.
575s Preparing to unpack .../193-r-cran-reformulas_0.4.4-1_all.deb ...
575s Unpacking r-cran-reformulas (0.4.4-1) ...
575s Selecting previously unselected package r-cran-statmod.
575s Preparing to unpack .../194-r-cran-statmod_1.5.0-1_arm64.deb ...
575s Unpacking r-cran-statmod (1.5.0-1) ...
575s Selecting previously unselected package r-cran-lme4.
575s Preparing to unpack .../195-r-cran-lme4_1.1-38-1_arm64.deb ...
575s Unpacking r-cran-lme4 (1.1-38-1) ...
575s Selecting previously unselected package r-cran-numderiv.
575s Preparing to unpack .../196-r-cran-numderiv_2016.8-1.1-3build1_all.deb ...
575s Unpacking r-cran-numderiv (2016.8-1.1-3build1) ...
575s Selecting previously unselected package r-cran-gtable.
575s Preparing to unpack .../197-r-cran-gtable_0.3.6+dfsg-1_all.deb ...
575s Unpacking r-cran-gtable (0.3.6+dfsg-1) ...
575s Selecting previously unselected package r-cran-isoband.
575s Preparing to unpack .../198-r-cran-isoband_0.2.7-1_arm64.deb ...
575s Unpacking r-cran-isoband (0.2.7-1) ...
575s Selecting previously unselected package r-cran-farver.
575s Preparing to unpack .../199-r-cran-farver_2.1.2-1_arm64.deb ...
575s Unpacking r-cran-farver (2.1.2-1) ...
575s Selecting previously unselected package r-cran-labeling.
575s Preparing to unpack .../200-r-cran-labeling_0.4.3-1_all.deb ...
575s Unpacking r-cran-labeling (0.4.3-1) ...
575s Selecting previously unselected package r-cran-viridislite.
575s Preparing to unpack .../201-r-cran-viridislite_0.4.3-1_all.deb ...
575s Unpacking r-cran-viridislite (0.4.3-1) ...
575s Selecting previously unselected package r-cran-scales.
575s Preparing to unpack .../202-r-cran-scales_1.4.0-1_all.deb ...
575s Unpacking r-cran-scales (1.4.0-1) ...
575s Selecting previously unselected package r-cran-ggplot2.
575s Preparing to unpack .../203-r-cran-ggplot2_3.5.1+dfsg-1_all.deb ...
575s Unpacking r-cran-ggplot2 (3.5.1+dfsg-1) ...
575s Selecting previously unselected package r-cran-cowplot.
575s Preparing to unpack .../204-r-cran-cowplot_1.1.3+dfsg-1_all.deb ...
575s Unpacking r-cran-cowplot (1.1.3+dfsg-1) ...
575s Selecting previously unselected package r-cran-deriv.
575s Preparing to unpack .../205-r-cran-deriv_4.2.0-1_all.deb ...
575s Unpacking r-cran-deriv (4.2.0-1) ...
575s Selecting previously unselected package r-cran-colorspace.
575s Preparing to unpack .../206-r-cran-colorspace_2.1-1+dfsg-1_arm64.deb ...
575s Unpacking r-cran-colorspace (2.1-1+dfsg-1) ...
575s Selecting previously unselected package r-cran-fracdiff.
575s Preparing to unpack .../207-r-cran-fracdiff_1.5-3-1_arm64.deb ...
575s Unpacking r-cran-fracdiff (1.5-3-1) ...
575s Selecting previously unselected package r-cran-zoo.
575s Preparing to unpack .../208-r-cran-zoo_1.8-15-1_arm64.deb ...
575s Unpacking r-cran-zoo (1.8-15-1) ...
575s Selecting previously unselected package r-cran-lmtest.
575s Preparing to unpack .../209-r-cran-lmtest_0.9.40-1build1_arm64.deb ...
575s Unpacking r-cran-lmtest (0.9.40-1build1) ...
575s Selecting previously unselected package r-cran-timedate.
575s Preparing to unpack .../210-r-cran-timedate_4052.112-1_arm64.deb ...
575s Unpacking r-cran-timedate (4052.112-1) ...
575s Selecting previously unselected package r-cran-quadprog.
575s Preparing to unpack .../211-r-cran-quadprog_1.5-8-1build2_arm64.deb ...
575s Unpacking r-cran-quadprog (1.5-8-1build2) ...
575s Selecting previously unselected package r-cran-xts.
575s Preparing to unpack .../212-r-cran-xts_0.14.1-1_arm64.deb ...
575s Unpacking r-cran-xts (0.14.1-1) ...
575s Selecting previously unselected package r-cran-curl.
576s Preparing to unpack .../213-r-cran-curl_7.0.0+dfsg-1_arm64.deb ...
576s Unpacking r-cran-curl (7.0.0+dfsg-1) ...
576s Selecting previously unselected package r-cran-ttr.
576s Preparing to unpack .../214-r-cran-ttr_0.24.4-1_arm64.deb ...
576s Unpacking r-cran-ttr (0.24.4-1) ...
576s Selecting previously unselected package r-cran-quantmod.
576s Preparing to unpack .../215-r-cran-quantmod_0.4.28-1_all.deb ...
576s Unpacking r-cran-quantmod (0.4.28-1) ...
576s Selecting previously unselected package r-cran-tseries.
576s Preparing to unpack .../216-r-cran-tseries_0.10-59-3_arm64.deb ...
576s Unpacking r-cran-tseries (0.10-59-3) ...
576s Selecting previously unselected package r-cran-urca.
576s Preparing to unpack .../217-r-cran-urca_1.3-4-1build1_arm64.deb ...
576s Unpacking r-cran-urca (1.3-4-1build1) ...
576s Selecting previously unselected package r-cran-forecast.
576s Preparing to unpack .../218-r-cran-forecast_8.23.0-1_arm64.deb ...
576s Unpacking r-cran-forecast (8.23.0-1) ...
576s Selecting previously unselected package r-cran-modelr.
576s Preparing to unpack .../219-r-cran-modelr_0.1.11-1_all.deb ...
576s Unpacking r-cran-modelr (0.1.11-1) ...
576s Selecting previously unselected package r-cran-microbenchmark.
576s Preparing to unpack .../220-r-cran-microbenchmark_1.5.0-1_arm64.deb ...
576s Unpacking r-cran-microbenchmark (1.5.0-1) ...
576s Selecting previously unselected package r-cran-doby.
576s Preparing to unpack .../221-r-cran-doby_4.7.1-3_all.deb ...
576s Unpacking r-cran-doby (4.7.1-3) ...
576s Selecting previously unselected package r-cran-evaluate.
576s Preparing to unpack .../222-r-cran-evaluate_1.0.5-1_all.deb ...
576s Unpacking r-cran-evaluate (1.0.5-1) ...
576s Selecting previously unselected package r-cran-xfun.
576s Preparing to unpack .../223-r-cran-xfun_0.55+dfsg-1_arm64.deb ...
576s Unpacking r-cran-xfun (0.55+dfsg-1) ...
576s Selecting previously unselected package r-cran-highr.
576s Preparing to unpack .../224-r-cran-highr_0.11+dfsg-1_all.deb ...
576s Unpacking r-cran-highr (0.11+dfsg-1) ...
576s Selecting previously unselected package r-cran-yaml.
576s Preparing to unpack .../225-r-cran-yaml_2.3.10-1_arm64.deb ...
576s Unpacking r-cran-yaml (2.3.10-1) ...
576s Selecting previously unselected package libjs-mathjax.
576s Preparing to unpack .../226-libjs-mathjax_2.7.9+dfsg-1build1_all.deb ...
576s Unpacking libjs-mathjax (2.7.9+dfsg-1build1) ...
577s Selecting previously unselected package r-cran-knitr.
577s Preparing to unpack .../227-r-cran-knitr_1.51+dfsg-1_all.deb ...
577s Unpacking r-cran-knitr (1.51+dfsg-1) ...
577s Selecting previously unselected package r-cran-pbkrtest.
577s Preparing to unpack .../228-r-cran-pbkrtest_0.5.5-1_all.deb ...
577s Unpacking r-cran-pbkrtest (0.5.5-1) ...
577s Selecting previously unselected package r-cran-sparsem.
577s Preparing to unpack .../229-r-cran-sparsem_1.84-2-1_arm64.deb ...
577s Unpacking r-cran-sparsem (1.84-2-1) ...
577s Selecting previously unselected package r-cran-matrixmodels.
577s Preparing to unpack .../230-r-cran-matrixmodels_0.5-4-1_all.deb ...
577s Unpacking r-cran-matrixmodels (0.5-4-1) ...
577s Selecting previously unselected package r-cran-survival.
577s Preparing to unpack .../231-r-cran-survival_3.8-6-1_arm64.deb ...
577s Unpacking r-cran-survival (3.8-6-1) ...
577s Selecting previously unselected package r-cran-matrixstats.
577s Preparing to unpack .../232-r-cran-matrixstats_1.5.0-1_arm64.deb ...
577s Unpacking r-cran-matrixstats (1.5.0-1) ...
577s Selecting previously unselected package r-cran-class.
577s Preparing to unpack .../233-r-cran-class_7.3-23-1_arm64.deb ...
577s Unpacking r-cran-class (7.3-23-1) ...
577s Selecting previously unselected package r-cran-proxy.
577s Preparing to unpack .../234-r-cran-proxy_0.4-27-1_arm64.deb ...
577s Unpacking r-cran-proxy (0.4-27-1) ...
577s Selecting previously unselected package r-cran-e1071.
577s Preparing to unpack .../235-r-cran-e1071_1.7-17-1_arm64.deb ...
577s Unpacking r-cran-e1071 (1.7-17-1) ...
577s Selecting previously unselected package r-cran-codetools.
577s Preparing to unpack .../236-r-cran-codetools_0.2-20-1build1_all.deb ...
577s Unpacking r-cran-codetools (0.2-20-1build1) ...
577s Selecting previously unselected package r-cran-iterators.
577s Preparing to unpack .../237-r-cran-iterators_1.0.14-1build1_all.deb ...
577s Unpacking r-cran-iterators (1.0.14-1build1) ...
577s Selecting previously unselected package r-cran-foreach.
577s Preparing to unpack .../238-r-cran-foreach_1.5.2-1build1_all.deb ...
577s Unpacking r-cran-foreach (1.5.2-1build1) ...
577s Selecting previously unselected package r-cran-data.table.
577s Preparing to unpack .../239-r-cran-data.table_1.17.0+dfsg-1_arm64.deb ...
577s Unpacking r-cran-data.table (1.17.0+dfsg-1) ...
577s Selecting previously unselected package r-cran-modelmetrics.
577s Preparing to unpack .../240-r-cran-modelmetrics_1.2.2.2-1build2_arm64.deb ...
577s Unpacking r-cran-modelmetrics (1.2.2.2-1build2) ...
577s Selecting previously unselected package r-cran-plyr.
577s Preparing to unpack .../241-r-cran-plyr_1.8.9-1_arm64.deb ...
577s Unpacking r-cran-plyr (1.8.9-1) ...
577s Selecting previously unselected package r-cran-proc.
577s Preparing to unpack .../242-r-cran-proc_1.18.5-1_arm64.deb ...
577s Unpacking r-cran-proc (1.18.5-1) ...
577s Selecting previously unselected package r-cran-tzdb.
577s Preparing to unpack .../243-r-cran-tzdb_0.5.0-1_arm64.deb ...
577s Unpacking r-cran-tzdb (0.5.0-1) ...
577s Selecting previously unselected package r-cran-clock.
577s Preparing to unpack .../244-r-cran-clock_0.7.2-1_arm64.deb ...
577s Unpacking r-cran-clock (0.7.2-1) ...
578s Selecting previously unselected package r-cran-gower.
578s Preparing to unpack .../245-r-cran-gower_1.0.2-1_arm64.deb ...
578s Unpacking r-cran-gower (1.0.2-1) ...
578s Selecting previously unselected package r-cran-sparsevctrs.
578s Preparing to unpack .../246-r-cran-sparsevctrs_0.2.0-2_arm64.deb ...
578s Unpacking r-cran-sparsevctrs (0.2.0-2) ...
578s Selecting previously unselected package r-cran-hardhat.
578s Preparing to unpack .../247-r-cran-hardhat_1.4.2+dfsg-1_all.deb ...
578s Unpacking r-cran-hardhat (1.4.2+dfsg-1) ...
578s Selecting previously unselected package r-cran-rpart.
578s Preparing to unpack .../248-r-cran-rpart_4.1.24-1build1_arm64.deb ...
578s Unpacking r-cran-rpart (4.1.24-1build1) ...
578s Selecting previously unselected package r-cran-shape.
578s Preparing to unpack .../249-r-cran-shape_1.4.6.1-1_all.deb ...
578s Unpacking r-cran-shape (1.4.6.1-1) ...
578s Selecting previously unselected package r-cran-diagram.
578s Preparing to unpack .../250-r-cran-diagram_1.6.5-2_all.deb ...
578s Unpacking r-cran-diagram (1.6.5-2) ...
578s Selecting previously unselected package r-cran-globals.
578s Preparing to unpack .../251-r-cran-globals_0.19.0-1_all.deb ...
578s Unpacking r-cran-globals (0.19.0-1) ...
578s Selecting previously unselected package r-cran-listenv.
578s Preparing to unpack .../252-r-cran-listenv_0.10.0+dfsg-1_all.deb ...
578s Unpacking r-cran-listenv (0.10.0+dfsg-1) ...
578s Selecting previously unselected package r-cran-parallelly.
578s Preparing to unpack .../253-r-cran-parallelly_1.42.0-1_arm64.deb ...
578s Unpacking r-cran-parallelly (1.42.0-1) ...
578s Selecting previously unselected package r-cran-future.
578s Preparing to unpack .../254-r-cran-future_1.34.0+dfsg-1_all.deb ...
578s Unpacking r-cran-future (1.34.0+dfsg-1) ...
578s Selecting previously unselected package r-cran-future.apply.
578s Preparing to unpack .../255-r-cran-future.apply_1.11.3+dfsg-1_all.deb ...
578s Unpacking r-cran-future.apply (1.11.3+dfsg-1) ...
578s Selecting previously unselected package r-cran-progressr.
578s Preparing to unpack .../256-r-cran-progressr_0.15.1-1_all.deb ...
578s Unpacking r-cran-progressr (0.15.1-1) ...
578s Selecting previously unselected package r-cran-squarem.
578s Preparing to unpack .../257-r-cran-squarem_2021.1-1build1_all.deb ...
578s Unpacking r-cran-squarem (2021.1-1build1) ...
578s Selecting previously unselected package r-cran-lava.
578s Preparing to unpack .../258-r-cran-lava_1.8.2+dfsg-1_all.deb ...
578s Unpacking r-cran-lava (1.8.2+dfsg-1) ...
578s Selecting previously unselected package r-cran-prodlim.
578s Preparing to unpack .../259-r-cran-prodlim_2024.06.25-1_arm64.deb ...
578s Unpacking r-cran-prodlim (2024.06.25-1) ...
578s Selecting previously unselected package r-cran-ipred.
578s Preparing to unpack .../260-r-cran-ipred_0.9-15-1_arm64.deb ...
578s Unpacking r-cran-ipred (0.9-15-1) ...
578s Selecting previously unselected package r-cran-timechange.
578s Preparing to unpack .../261-r-cran-timechange_0.3.0-2_arm64.deb ...
578s Unpacking r-cran-timechange (0.3.0-2) ...
578s Selecting previously unselected package r-cran-lubridate.
578s Preparing to unpack .../262-r-cran-lubridate_1.9.4+dfsg-1_arm64.deb ...
578s Unpacking r-cran-lubridate (1.9.4+dfsg-1) ...
579s Selecting previously unselected package r-cran-recipes.
579s Preparing to unpack .../263-r-cran-recipes_1.1.0+dfsg-1_all.deb ...
579s Unpacking r-cran-recipes (1.1.0+dfsg-1) ...
579s Selecting previously unselected package r-cran-reshape2.
579s Preparing to unpack .../264-r-cran-reshape2_1.4.4-2build2_arm64.deb ...
579s Unpacking r-cran-reshape2 (1.4.4-2build2) ...
579s Selecting previously unselected package r-cran-caret.
579s Preparing to unpack .../265-r-cran-caret_7.0-1+dfsg-1_arm64.deb ...
579s Unpacking r-cran-caret (7.0-1+dfsg-1) ...
579s Selecting previously unselected package r-cran-conquer.
579s Preparing to unpack .../266-r-cran-conquer_1.3.3-1_arm64.deb ...
579s Unpacking r-cran-conquer (1.3.3-1) ...
579s Selecting previously unselected package r-cran-quantreg.
579s Preparing to unpack .../267-r-cran-quantreg_6.1-1_arm64.deb ...
579s Unpacking r-cran-quantreg (6.1-1) ...
579s Selecting previously unselected package r-cran-car.
579s Preparing to unpack .../268-r-cran-car_3.1-5-1_all.deb ...
579s Unpacking r-cran-car (3.1-5-1) ...
579s Selecting previously unselected package r-cran-classint.
579s Preparing to unpack .../269-r-cran-classint_0.4-11+dfsg-1_arm64.deb ...
579s Unpacking r-cran-classint (0.4-11+dfsg-1) ...
579s Selecting previously unselected package r-cran-commonmark.
579s Preparing to unpack .../270-r-cran-commonmark_1.9.5-1_arm64.deb ...
579s Unpacking r-cran-commonmark (1.9.5-1) ...
579s Selecting previously unselected package r-cran-crayon.
579s Preparing to unpack .../271-r-cran-crayon_1.5.3-1_all.deb ...
579s Unpacking r-cran-crayon (1.5.3-1) ...
579s Selecting previously unselected package r-cran-dbi.
579s Preparing to unpack .../272-r-cran-dbi_1.2.3-1build1_all.deb ...
579s Unpacking r-cran-dbi (1.2.3-1build1) ...
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583s Setting up r-cran-mass (7.3-65-1) ...
583s Setting up r-cran-data.table (1.17.0+dfsg-1) ...
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583s Setting up r-cran-colorspace (2.1-1+dfsg-1) ...
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583s Setting up r-cran-gtable (0.3.6+dfsg-1) ...
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583s Setting up r-cran-later (1.4.1+dfsg-1) ...
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583s Setting up r-cran-knitr (1.51+dfsg-1) ...
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584s Setting up r-cran-rcppeigen (0.3.4.0.2-1) ...
584s Setting up r-cran-pillar (1.11.1+dfsg-1) ...
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584s Setting up r-cran-modelmetrics (1.2.2.2-1build2) ...
584s Setting up r-cran-matrixmodels (0.5-4-1) ...
584s Setting up r-cran-sparsevctrs (0.2.0-2) ...
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584s Setting up r-cran-future (1.34.0+dfsg-1) ...
584s Setting up r-cran-jquerylib (0.1.4+dfsg-5) ...
584s Setting up r-cran-tidyselect (1.2.1+dfsg-1) ...
584s Setting up r-cran-reshape2 (1.4.4-2build2) ...
584s Setting up r-cran-interp (1.1-6-1) ...
584s Setting up r-cran-future.apply (1.11.3+dfsg-1) ...
584s Setting up r-cran-timechange (0.3.0-2) ...
584s Setting up r-cran-memoise (2.0.1-1build1) ...
584s Setting up r-cran-lava (1.8.2+dfsg-1) ...
584s Setting up r-cran-promises (1.3.2+dfsg-1) ...
584s Setting up r-cran-purrr (1.0.4-1) ...
584s Setting up r-cran-e1071 (1.7-17-1) ...
584s Setting up r-cran-hardhat (1.4.2+dfsg-1) ...
584s Setting up r-cran-dplyr (1.1.4-4) ...
584s Setting up r-cran-reformulas (0.4.4-1) ...
584s Setting up r-cran-ttr (0.24.4-1) ...
584s Setting up r-cran-lubridate (1.9.4+dfsg-1) ...
584s Setting up r-cran-prodlim (2024.06.25-1) ...
584s Setting up r-cran-ggplot2 (3.5.1+dfsg-1) ...
584s Setting up r-cran-httpuv (1.6.15+dfsg-1) ...
584s Setting up r-cran-rpart (4.1.24-1build1) ...
584s Setting up r-cran-latticeextra (0.6-31-1) ...
584s Setting up r-cran-ipred (0.9-15-1) ...
584s Setting up r-cran-lme4 (1.1-38-1) ...
584s Setting up r-cran-classint (0.4-11+dfsg-1) ...
584s Setting up r-cran-bslib (0.9.0+dfsg-3build1) ...
584s Setting up r-cran-tidyr (1.3.1-1) ...
584s Setting up r-cran-recipes (1.1.0+dfsg-1) ...
584s Setting up r-cran-quantmod (0.4.28-1) ...
584s Setting up r-cran-cowplot (1.1.3+dfsg-1) ...
584s Setting up r-cran-adegraphics (1.0-22-1) ...
584s Setting up r-cran-caret (7.0-1+dfsg-1) ...
584s Setting up r-cran-shiny (1.10.0+dfsg-2) ...
584s Setting up r-cran-tseries (0.10-59-3) ...
584s Setting up r-cran-broom (1.0.12+dfsg-1) ...
584s Setting up r-cran-rmarkdown (2.30+dfsg-1) ...
584s Setting up r-cran-conquer (1.3.3-1) ...
584s Setting up r-cran-forecast (8.23.0-1) ...
584s Setting up r-cran-quantreg (6.1-1) ...
584s Setting up r-cran-modelr (0.1.11-1) ...
584s Setting up r-cran-doby (4.7.1-3) ...
584s Setting up r-cran-pbkrtest (0.5.5-1) ...
584s Setting up r-cran-car (3.1-5-1) ...
584s Setting up libheif1:arm64 (1.21.2-1) ...
584s Setting up libheif-plugin-aomdec:arm64 (1.21.2-1) ...
584s Setting up libheif-plugin-libde265:arm64 (1.21.2-1) ...
584s Setting up libgdal38:arm64 (3.12.1+dfsg-1) ...
584s Setting up r-cran-sf (1.0-19+dfsg-2build2) ...
584s Setting up r-cran-spdep (1.3-5+dfsg-1) ...
584s Processing triggers for install-info (7.2-5) ...
584s Processing triggers for libc-bin (2.42-2ubuntu4) ...
584s Processing triggers for man-db (2.13.1-1build1) ...
588s autopkgtest [22:57:07]: test run-unit-test: [-----------------------
588s 
588s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"
588s Copyright (C) 2025 The R Foundation for Statistical Computing
588s Platform: aarch64-unknown-linux-gnu
588s 
588s R is free software and comes with ABSOLUTELY NO WARRANTY.
588s You are welcome to redistribute it under certain conditions.
588s Type 'license()' or 'licence()' for distribution details.
588s 
588s R is a collaborative project with many contributors.
588s Type 'contributors()' for more information and
588s 'citation()' on how to cite R or R packages in publications.
588s 
588s Type 'demo()' for some demos, 'help()' for on-line help, or
588s 'help.start()' for an HTML browser interface to help.
588s Type 'q()' to quit R.
588s 
588s Registered S3 methods overwritten by 'adegraphics':
588s   method         from
588s   biplot.dudi    ade4
588s   kplot.foucart  ade4
588s   kplot.mcoa     ade4
588s   kplot.mfa      ade4
588s   kplot.pta      ade4
588s   kplot.sepan    ade4
588s   kplot.statis   ade4
588s   scatter.coa    ade4
588s   scatter.dudi   ade4
588s   scatter.nipals ade4
588s   scatter.pco    ade4
588s   score.acm      ade4
588s   score.mix      ade4
588s   score.pca      ade4
588s   screeplot.dudi ade4
588s > library(adegraphics)
588s > pdf("add.pdf")
588s > set.seed(40)
588s > 
588s > ########################### add.ADEg ##############################
588s > 
588s > data(granulo, package = "ade4")
588s > df <- data.frame(t(apply(granulo$tab, 1, function(x) x / sum(x))))
588s > pca <- ade4::dudi.pca(df, scal = FALSE, scan = FALSE)
588s > 
588s > g1 <- s.arrow(ade4::dudi.pca(data.frame(df), scan = F, nf = 2)$co)
588s > g2 <- s.label(pca$li, plabels.cex = 0.5, plabels.col = "blue", plot = F)
588s > g3 <- add.ADEg(g2)
588s > g4 <- s.label(pca$c1, plabels.col = "red", add = T)
588s > 
588s > g5 <- s.arrow(pca$c1, plabels.cex = 1.5, plot = FALSE)
588s > g6 <- ADEgS(list(g1 = g1, g5 = g5), layout = c(1, 2))
588s > update(g6, pback.col = "lightblue", g1.plabels.cex = 2, g5.plabels.col = "red")
588s > 
588s > 
588s > ############################## addhist ##############################
588s > dfxy1 <- matrix(rnorm(200), ncol = 2)
588s > gh1 <- s.label(dfxy1)
588s > gh2 <- addhist(gh1)
588s > 
588s > dfxy2 <- dfxy1
588s > dfxy2[, 2] <- dfxy2[, 2] + rnorm(100, 2)
588s > gh3 <- s.label(dfxy2)
588s > gh4 <- addhist(gh3, plot.polygon = list(col = "red"))
588s > 
588s > data(rpjdl, package = "ade4")
588s > coa1 <- ade4::dudi.coa(rpjdl$fau, scannf = FALSE, nf = 4)
588s > gh5 <- s.label(coa1$li)
588s > gh6 <- addhist(gh5)
588s > 
588s > 
588s > ############################## addtext ##############################
588s > # on a ADEg
588s > addtext(g1, -1, 1, "Data Granulo", plabels.cex = 1.5, plabels.col = "red")
588s > addtext(g1, -1, 1, c("Data", "Granulo"), plabels.cex = 1.5, plabels.col = c("red", "blue")) # the two labels are superposed
588s > addtext(g1, -1, 1, c("Data", "Granulo"), plabels.cex = 1.5, plabels.col = "red") # the two labels are superposed
588s > 
588s > addtext(g1, c(-1, -0.5), 1, "Data Granulo", plabels.cex = 1.5, plabels.col = c("red", "blue"))
588s > addtext(g1, c(-1, -0.5), 1, c("Data", "Granulo"), plabels.cex = 1.5, plabels.col = c("red", "blue"))
588s > 
588s > addtext(g1, -1, c(1, 0.9), c("Data", "Granulo"), plabels.cex = 1.5, plabels.col = "red")
588s > addtext(g1, -1, c(1, 0.9), c("Data", "Granulo"), plabels.cex = c(1.5, 2), plabels.col = "red")
588s > 
588s > data(dunedata, package = "ade4")
588s > afc1 <- ade4::dudi.coa(dunedata$veg, scannf = FALSE)
588s > g7 <- table.value(dunedata$veg, symbol = "circle", ppoints.cex = 0.5, plot = FALSE)
588s > addtext(g7, 1, 20, "A", plabels.srt = 45, plabels.boxes.draw = FALSE)
588s > 
588s > # on a ADEgS: juxtaposition
588s > addtext(g6, 0.5, 0.5, "Text added", plabels.col = "blue", which = 1)
588s > addtext(g6, 0.5, 0.5, "Text added", plabels.col = c("blue", "green"), which = 2)
588s > addtext(g6, 0.5, 0.5, "Text added", plabels.col = c("green4", "blue"), which = 2)
588s > addtext(g6, 0.5, 0.5, "Text added", plabels.col = "blue", which = 1:2)
588s > addtext(g6, 0.5, 0.5, "Text added", plabels.col = c("green4", "blue"))
588s > addtext(g6, c(0.7, -0.5), c(0.2, -0.4), "Text added", plabels.col = "blue", plabels.cex = 1.2, which = 1:2)
588s > addtext(g6, c(0.7, -0.5), c(0.2, -0.4), "Text added", plabels.cex = c(0.5, 1.5), plabels.col = c("blue", "green4"))
588s > 
588s > xy2 <- cbind.data.frame(x = runif(200, -1, 1), y = runif(200, -2, 2), y2 = runif(200, -0.5, 0.5))
588s > fac2 <- factor(xy2$x > 0) 
588s > g9 <- s.class(xy2, fac = fac2, xax = 1, yax = 2:3, plot = FALSE)
588s > addtext(g9, 0, 0, "A", plabels.col = "red", plabels.cex = 2)
589s > addtext(g9, c(-2.1, -1.07), c(2, 1), c("A", "B"), plabels.col ="red", plabels.cex = 2, which = 1:2)
589s > addtext(g9, c(-2.1, -1.07), c(2, 1), c("A", "B"), plabels.col = c("green4", "red"), plabels.cex = c(3, 2), which = 1:2)
589s > 
589s > # on a ADEgS: facets
589s > xy <- cbind.data.frame(x = runif(200, -1, 1), y = runif(200, -1, 1))
589s > posi <- factor(xy$x > 0) : factor(xy$y > 0)
589s > g10 <- s.class(xy, fac = posi, facets = posi, pellipses.col = 1:4, plabels.cex = 0, plegend.drawKey = FALSE, psub.cex = 0, plot = FALSE)
589s > addtext(g10, c(0.5, 0.5, -0.5, -0.5), c(0.5, -0.5), levels(posi), plabels.cex = 2, plabels.col = 1:4)
589s > 
589s > 
589s > ############################## addline ##############################
589s > # on a 2D plot
589s > g11 <- s.label(cbind(rnorm(100), rnorm(100)), plot = FALSE)
589s > addline(g11, 0, 1, plines = list(col = "red", lwd = 2, lty = 2))
589s > addline(g11, h = 1, plines.col = "chartreuse4", plines.lwd = 3)
589s > addline(g11, v = c(-1, 1), plines.col = "cadetblue", plines.lwd = 3)
589s > 
589s > # on a 1D plot
589s > g12 <- s1d.label(rnorm(10), plot = FALSE)
589s > addline(g12, v = 1, plines.col = "chartreuse4", plines.lwd = 3)
590s > 
590s > # on a ADEgS: juxtaposition
590s > g13 <- ADEgS(c(g11, g11), plot = FALSE)
590s > addline(g13, 0, 1, which = 1, plines.col = "red")
590s > addline(g13, 0, 1, which = 2, plines.col = "red")
590s > addline(g13, 0, 1, which = 1:2, plines.col = "red")
590s > addline(g13, 0, 1, plines.col = "red")
590s > addline(g13, h = 1, plines.col = "red")
590s > addline(g13, h = c(1, -1), plines.col = "red")
590s > addline(g13, v = c(-1, 1), plines.col = "red")
590s > addline(g13, v = c(-1, 1), plines.col = 2:3)
590s > addline(g13, c(0.7, -0.5), c(0.2, -0.4), which = 1:2, plines.col = "red")
590s > addline(g13, c(0.7, -0.5), c(0.2, -0.4), which = 1, plines.col = "red")
590s > addline(g13, 0.7, 0.2, which = 1, plines.col = "red")
591s > addline(g13, 0.7, -0.5, which = 1, plines.col = "red")
591s > 
591s > xy2 <- cbind.data.frame(x = runif(200, -1, 1), y = runif(200, -2, 2), y2 = runif(200, -0.5, 0.5))
591s > fac2 <- factor(xy2$x > 0) 
591s > g9 <- s.class(xy2, fac = fac2, xax = 1, yax = 2:3, plot = FALSE)
591s > addline(g9, 1, 0, "A", plines.col = "red", plabels.cex = 2)
591s Warning messages:
591s 1: In panel.abline(a = a, b = b, h = h, v = v, lwd = params$lwd, lty = params$lty,  :
591s   NAs introduced by coercion
591s 2: In panel.abline(a = a, b = b, h = h, v = v, lwd = params$lwd, lty = params$lty,  :
591s   NAs introduced by coercion
591s > addline(g9, c(-2.1, -1.07), c(2, 1), plines.col ="red", which = 1:2)
591s > addline(g9, c(-2.1, -1.07), c(2, 1), plines.col = c("green4", "red"))
591s > 
591s > # on a ADEgS: facets
591s > xy <- cbind.data.frame(x = runif(200, -1, 1), y = runif(200, -1, 1))
591s > posi <- factor(xy$x > 0) : factor(xy$y > 0)
591s > g10 <- s.class(xy, fac = posi, facets = posi, pellipses.col = 1:4, plabels.cex = 0, plegend.drawKey = FALSE, psub.cex = 0, plot = FALSE)
591s > addline(g10, 0, c(0.5, -0.5), plines.col = 1:4)
591s > 
591s > 
591s > ############################## addpoint ##############################
591s > # on a 2D plot
591s > g11 <- s.label(cbind(rnorm(100), rnorm(100)), ylab = "y axis label", 
591s +                paxes.draw = TRUE, plot = FALSE)
591s > addpoint(g11, 2, 2, ppoints.col = "coral", ppoints.pch = "*", ppoints.cex = 4)
591s > addpoint(g11, c(1, 2), c(1, 2), ppoints.col = "brown2")
591s > addpoint(g11, 1, c(1, 2), ppoints.col = "cyan3")
592s > 
592s > # on a 1D plot
592s > g12 <- s1d.density(rnorm(1000), paxes.draw = TRUE, plot = FALSE)
592s > addpoint(g12, 2, 0, ppoints.col = "brown4", ppoints.cex = 3)
592s > 
592s > g12 <- s1d.density(rnorm(1000), plot = FALSE, ylab = "y axis label")
592s > addpoint(g12, 2, 0, ppoints.col = "brown4", ppoints.cex = 3)
592s > 
592s > # on a ADEgS: juxtaposition
592s > g13 <- ADEgS(c(g11, g11), plot = FALSE)
592s > addpoint(g13, 2, 2, which = 1, ppoints.col = "cyan3")
592s > addpoint(g13, 2, 2, which = 2, ppoints.col = "cyan3")
592s > addpoint(g13, 2, 2, which = 1:2, ppoints.col = "cyan3")
592s > addpoint(g13, 2, 2, ppoints.col = "cyan3")
592s > addpoint(g13, c(1, 2), 2, ppoints.col = "cyan3")
592s > addpoint(g13, 2, c(1, 2), ppoints.col = "cyan3")
593s > 
593s > xy2 <- cbind.data.frame(x = runif(200, -1, 1), y = runif(200, -2, 2), y2 = runif(200, -0.5, 0.5))
593s > fac2 <- factor(xy2$x > 0) 
593s > g9 <- s.class(xy2, fac = fac2, xax = 1, yax = 2:3, plot = FALSE)
593s > addpoint(g9, 1, 0, ppoints.col = "red", ppoints.cex = 2)
593s > addpoint(g9, c(1, -1), 0, ppoints.col = "red", ppoints.cex = 2)
593s > addpoint(g9, 0, c(1, -1), ppoints.col = "red", ppoints.cex = 2)
593s > 
593s > # on a ADEgS: facets
593s > xy <- cbind.data.frame(x = runif(200, -1, 1), y = runif(200, -1, 1))
593s > posi <- factor(xy$x > 0) : factor(xy$y > 0)
593s > g10 <- s.class(xy, fac = posi, facets = posi, pellipses.col = 1:4, plabels.cex = 0, plegend.drawKey = FALSE, psub.cex = 0, plot = FALSE)
593s > addpoint(g10, 0, c(0.5, -0.5), ppoints.col = 1:4, ppoints.cex = 3)
593s > 
593s > 
593s > ############################## addsegment ##############################
593s > # on a 2D plot
593s > g11 <- s.label(cbind(rnorm(100), rnorm(100)), paxes.draw = TRUE, plot = FALSE)
593s > addsegment(g11, 0, 2, 0, -2, plines = list(col = "brown2", lwd = 3, lty = 2))
593s > addsegment(g11, c(0, 1), 2, 0, -2, plines = list(col = "brown2", lwd = 3, lty = 2))
593s > addsegment(g11, c(0, 1), 2, c(0, 1), -2, plines = list(col = c("cyan3", "brown2"), lwd = 3, lty = 2))
594s > addsegment(g11, -2, -2, 2, 2, plines = list(col = "brown2", lwd = 3, lty = 2))
594s > addsegment(g11, -2, 2, 2, -2, plines = list(col = "cyan3", lwd = 3, lty = 2))
594s > 
594s > g12 <- s.label(cbind(rnorm(100), rnorm(100)), ylab = "y axis label", plot = FALSE)
594s > addsegment(g12, 0, 2, 0, -2, plines = list(col = "brown2", lwd = 3, lty = 2))
594s > addsegment(g12, -2, -2, 2, 2, plines = list(col = "brown2", lwd = 3, lty = 2))
594s > addsegment(g12, -2, 2, 2, -2, plines = list(col = "cyan3", lwd = 3, lty = 2))
594s > 
594s > # on a 1D plot
594s > g13 <- s1d.density(rnorm(1000), paxes.draw = TRUE, ylab = "ylab", plot = FALSE)
594s > addsegment(g13, 2, 0, 2, 0.2, plines.col = 1, plines.lwd = 3)
594s > 
594s > # on a ADEgS: juxtaposition
594s > g14 <- ADEgS(c(g11, g11), plot = FALSE)
594s > addsegment(g14, 1, 2, 1, -2, which = 1, plines.col = "brown2")
594s > addsegment(g14, 1, 2, 1, -2, which = 2, plines.col = "brown2")
594s > addsegment(g14, c(0, 1), 2, c(0, 1), -2, which = 1:2, plines.col = "brown2")
594s > addsegment(g14, 1, 2, c(0, 1), -2, which = 1:2, plines.col = "brown2")
594s > addsegment(g14, 1, 2, 1, -2, plines.col = "brown2")
594s > 
594s > xy2 <- cbind.data.frame(x = runif(200, -1, 1), y = runif(200, -2, 2), y2 = runif(200, -0.5, 0.5))
594s > fac2 <- factor(xy2$x > 0) 
594s > g9 <- s.class(xy2, fac = fac2, xax = 1, yax = 2:3, plot = FALSE)
595s > addsegment(g9, 1, 0, 1, 0.5, plines.col = "red", plines.lwd = 2)
595s > addsegment(g9, 1, -1, 0, 1, plines.col = "red", plines.lwd = 2)
595s > addsegment(g9, 0, 1, -1, 1, plines.col = "red", plines.lwd = 2)
595s > 
595s > # on a ADEgS: facets
595s > xy <- cbind.data.frame(x = runif(200, -1, 1), y = runif(200, -1, 1))
595s > posi <- factor(xy$x > 0) : factor(xy$y > 0)
595s > g10 <- s.class(xy, fac = posi, facets = posi, pellipses.col = 1:4, plabels.cex = 0, plegend.drawKey = FALSE, psub.cex = 0, plot = FALSE)
595s > addsegment(g10, c(-0.5, 0.5), c(0.5, -0.5), c(-0.5, 0.5), 1, plines.col = 1:4, plines.lwd = 3)
595s > 
595s 
595s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"
595s Copyright (C) 2025 The R Foundation for Statistical Computing
595s Platform: aarch64-unknown-linux-gnu
595s 
595s R is free software and comes with ABSOLUTELY NO WARRANTY.
595s You are welcome to redistribute it under certain conditions.
595s Type 'license()' or 'licence()' for distribution details.
595s 
595s R is a collaborative project with many contributors.
595s Type 'contributors()' for more information and
595s 'citation()' on how to cite R or R packages in publications.
595s 
595s Type 'demo()' for some demos, 'help()' for on-line help, or
595s 'help.start()' for an HTML browser interface to help.
595s Type 'q()' to quit R.
595s 
595s > ## delete/remove this file when 'scatter' functions will be removed in ade4
595s > 
595s > library(adegraphics)
596s Registered S3 methods overwritten by 'adegraphics':
596s   method         from
596s   biplot.dudi    ade4
596s   kplot.foucart  ade4
596s   kplot.mcoa     ade4
596s   kplot.mfa      ade4
596s   kplot.pta      ade4
596s   kplot.sepan    ade4
596s   kplot.statis   ade4
596s   scatter.coa    ade4
596s   scatter.dudi   ade4
596s   scatter.nipals ade4
596s   scatter.pco    ade4
596s   score.acm      ade4
596s   score.mix      ade4
596s   score.pca      ade4
596s   screeplot.dudi ade4
596s > pdf("ade4-functions.pdf")
596s > 
596s > ##################### scatter.dudi
596s > data(deug, package = "ade4")
596s > dd1 <- ade4::dudi.pca(deug$tab, scannf = FALSE, nf = 4)
596s > scatter(dd1, posieig = "bottomright")
596s > scatter(dd1, posieig = "bottomright", plot = T, prop = TRUE)
597s > scatter(dd1, posieig = "none", plot = T)
597s > scatter(dd1, posieig = "bottomleft", plot = T)
597s > scatter(dd1, posieig = "topright", plot = T)
597s > scatter(dd1, posieig = "topleft", plot = T, eig.col = c("white", "blue", "red"))
598s > 
598s > data(rhone, package = "ade4")
598s > dd1 <- ade4::dudi.pca(rhone$tab, nf = 4, scannf = FALSE)
598s > g1 <- scatter(dd1, sub = "Principal component analysis", row = list(plabels.optim = TRUE), col.pla.boxes.alpha = 0.5)
598s > g1[2, drop = TRUE]
598s > scatter(dd1, row = list(sub = "Principal component analysis", plabels.optim = TRUE), col.pla.boxes.alpha = 0.5)
598s > scatter(dd1, prop = TRUE, ppoints.cex = 0.2, density.plot = TRUE, row = list(threshold = 0.01))
599s > 
599s > scatter(dd1, posieig = "none")
599s > scatter(dd1, posieig = "bottomright")
599s > scatter(dd1, posieig = c(0.5, 0.5))
600s > scatter(dd1, posieig = c(0.5, 0.5, 1, 1))
600s > 
600s > 
600s > ##################### scatter.coa
600s > data(housetasks, package = "ade4")
600s > par(mfrow = c(2, 2))
600s > dd2 <- ade4::dudi.coa(housetasks, scan = FALSE)
600s > ade4::scatter(dd2, method = 1, sub = "1 / Standard", posieig = "none")
600s > ade4::scatter(dd2, method = 2, sub = "2 / Columns -> averaging -> Rows", posieig = "none")
600s > ade4::scatter(dd2, method = 3, sub = "3 / Rows -> averaging -> Columns ", posieig = "none")
600s > par(mfrow = c(1, 1))
600s > 
600s > g1 <- scatter(dd2, method = 1, row.sub = "1 / Standard", posieig = "none", plot = FALSE)
600s > g2 <- scatter(dd2, method = 2, col.sub = "2 / Columns -> averaging -> Rows", posieig = "none", plot = FALSE)
600s > g3 <- scatter(dd2, method = 3, row.sub = "3 / Rows -> averaging -> Columns ", posieig = "none", plot = FALSE)
600s > G <- ADEgS(list(g1, g2, g3), layout = c(2, 2), plot = TRUE)
600s > 
600s > scatter(dd2, posieig = "none")
600s > scatter(dd2, posieig = "bottomright")
601s > scatter(dd2, posieig = c(0.5, 0.5))
601s > scatter(dd2, posieig = c(0.5, 0.5, 1, 1))
601s > 
601s > 
601s > ##################### scatter.pco
601s > data(yanomama, package = "ade4")
601s > gen <- ade4::quasieuclid(as.dist(yanomama$gen))
601s > gen1 <- ade4::dudi.pco(gen, scann = FALSE, nf = 3)
601s > scatter(gen1, posieig = "none")
601s > scatter(gen1, posieig = "bottomri")
601s > scatter(gen1, posieig = c(0.5, 0.5))
601s > scatter(gen1, posieig = c(0.5, 0.5, 1, 1))
601s > 
601s > 
601s > ##################### scatter.nipals
601s > data(doubs, package = "ade4")
601s > acp1 <- ade4::dudi.pca(doubs$env, scannf = FALSE, nf = 2)
601s > nip1 <- ade4::nipals(doubs$env)
602s > scatter(nip1, posieig = "none")
603s > scatter(nip1, posieig = "bottomri")
603s > scatter(nip1, posieig = c(0.5, 0.5))
603s > scatter(nip1, posieig = c(0.5, 0.5, 1, 1))
603s > 
603s > 
603s > ##################### score.inertia - plot.inertia
603s > data(housetasks, package = "ade4")
603s > coa2 <- ade4::dudi.coa(housetasks, scann = FALSE)
603s > res21 <- ade4::inertia(coa2, row = TRUE, col = FALSE)
603s > plot(res21, posieig = "none")
603s > plot(res21, posieig = "bottomri")
603s > plot(res21, posieig = c(0.5,0.5))
604s > plot(res21, posieig = c(0.5, 0.5, 1, 1))
604s > score(res21, posieig = "none")
604s > score(res21, posieig = "bottomri")
604s > score(res21, posieig = c(0.5, 0.5))
604s > score(res21, posieig = c(0.5, 0.5, 1, 1))
604s > 
604s > res22 <- ade4::inertia(coa2, row = FALSE, col = TRUE)
604s > plot(res22, posieig = "none")
604s > plot(res22, posieig = "bottomri")
604s > plot(res22, posieig = c(0.5, 0.5))
604s > plot(res22, posieig = c(0.5, 0.5, 1, 1))
604s > score(res22, posieig = "none")
604s > score(res22, posieig = "bottomri")
605s > score(res22, posieig = c(0.5, 0.5))
605s > score(res22, posieig = c(0.5, 0.5, 1, 1))
605s > 
605s > res23 <- ade4::inertia(coa2, row = TRUE, col = TRUE)
605s > plot(res23, posieig = "none")
605s > plot(res23, posieig = "bottomri")
605s > plot(res23, posieig = c(0.5, 0.5))
605s > plot(res23, posieig = c(0.5, 0.5, 1, 1))
605s > score(res23, posieig = "none")
606s > score(res23, posieig = "bottomri")
606s > score(res23, posieig = c(0.5, 0.5))
606s > score(res23, posieig = c(0.5, 0.5, 2, 2))
606s > 
606s > data(doubs, package = "ade4")
606s > afc <- ade4::dudi.coa(doubs$fish, scannf = FALSE, nf = 5)
606s > ic <- ade4::inertia.dudi(afc, row.inertia=TRUE, col.inertia=TRUE)
606s > plot(ic, contrib = "abs", threshold = 0.1, type = "label")
606s > plot(ic, contrib="abs", threshold = 0.1, type = "label", xax = 3, yax = 4) 
607s > 
607s > 
607s > ##################### plot.acm
607s > data(lascaux, package = "ade4")
607s > 
607s > acm1 <- ade4::dudi.acm(lascaux$ornem, sca = FALSE)
607s > p1 <- proc.time()
607s > ade4::scatter(acm1)
607s > Tade4 <- proc.time() - p1
607s > 
607s > p2 <- proc.time()
607s > plot(acm1, ppoints.cex = 0.3, plot = T)
608s > Tadegraphics <- proc.time() - p2
608s > ## faster calculus, longest display than for ade4
608s > 
608s > 
608s > ##################### plot.fca
608s > data(coleo, package = "ade4")
608s > coleo.fuzzy <- ade4::prep.fuzzy.var(coleo$tab, coleo$col.blocks)
608s 2 missing data found in block 1 
608s 1 missing data found in block 3 
608s 2 missing data found in block 4 
608s > 
608s > fca1 <- ade4::dudi.fca(coleo.fuzzy, scannf = FALSE, nf = 3)
608s > ade4::scatter(fca1)
608s > plot(fca1)
608s > 
608s 
608s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"
608s Copyright (C) 2025 The R Foundation for Statistical Computing
608s Platform: aarch64-unknown-linux-gnu
608s 
608s R is free software and comes with ABSOLUTELY NO WARRANTY.
608s You are welcome to redistribute it under certain conditions.
608s Type 'license()' or 'licence()' for distribution details.
608s 
608s R is a collaborative project with many contributors.
608s Type 'contributors()' for more information and
608s 'citation()' on how to cite R or R packages in publications.
608s 
608s Type 'demo()' for some demos, 'help()' for on-line help, or
608s 'help.start()' for an HTML browser interface to help.
608s Type 'q()' to quit R.
608s 
608s > library(adegraphics)
609s Registered S3 methods overwritten by 'adegraphics':
609s   method         from
609s   biplot.dudi    ade4
609s   kplot.foucart  ade4
609s   kplot.mcoa     ade4
609s   kplot.mfa      ade4
609s   kplot.pta      ade4
609s   kplot.sepan    ade4
609s   kplot.statis   ade4
609s   scatter.coa    ade4
609s   scatter.dudi   ade4
609s   scatter.nipals ade4
609s   scatter.pco    ade4
609s   score.acm      ade4
609s   score.mix      ade4
609s   score.pca      ade4
609s   screeplot.dudi ade4
609s > pdf("adegraphics.pdf")
609s > 
609s > xy <- cbind.data.frame(runif(7), runif(7))
609s > g1 <- s.label(xy)
609s > 
609s > data(olympic, package = "ade4")
609s > pca <- ade4::dudi.pca(olympic$tab, scan = FALSE)
609s > g2 <- s.corcircle(pca$co, lab = names(olympic$tab))
609s > 
609s > g3 <- ADEgS(list(g1, g2), rbind(c(0, 0, 0.5, 1), c(0.5, 0, 1, 1)))
609s > g4 <- ADEgS(list(g1, g2), layout = c(1, 2)) ## the same as g3
609s > g4b <- ADEgS(list(g1, g2)) ## the same as g3
609s > g5 <- s.label(xy, plabels.cex = 0, paxes.draw = TRUE, ppoints.col = "red")
609s > 
609s > g6 <- superpose(g1, g5, plot = TRUE)
610s > g6b <- s.density(xy)
610s > g7 <- superpose(s.density(xy), g5, plot = TRUE)
611s >  
611s > g8 <- superpose(s.label(xy, plabels.boxes.col = "orange", plot = FALSE), 
611s +                 s.label(xy, plabels.cex = 0, paxes.draw = TRUE, ppoints.col = "red", plot = FALSE), 
611s +                 plot = TRUE)
611s > 
611s > g9 <- g8[1, drop = TRUE]
611s > class(g9)
611s [1] "S2.label"
611s attr(,"package")
611s [1] "adegraphics"
611s > g10 <- g8[1, drop = FALSE]
611s > class(g10)
611s [1] "ADEgS"
611s attr(,"package")
611s [1] "adegraphics"
611s > 
611s > g11 <- ADEgS(list(g8, g3), positions = rbind(c(0, 0, 0.5, 1), c(0.5, 0, 1, 1)))
611s > 
611s > ## cbindADEgS - rbindADEgS
611s > g12 <- cbindADEg(g1, g2, plot = TRUE) ## the same as g3
611s > g13 <- cbindADEg(g8, g3, plot = TRUE) ## the same as g11
611s > g14 <- rbindADEg(g8, g3, plot = TRUE)
611s > 
611s > data(banque, package = "ade4")
611s > banque.acm <- ade4::dudi.acm(banque, scann = FALSE, nf = 3)
611s > g15 <- score(banque.acm, which = which(banque.acm$cr[, 1] > 0.2), plot = FALSE)
611s > g15 <- g15[[1]]
611s > cbindADEg(g15[[1]], g15[[2]], plot = TRUE)   ## work on trellis object
611s > 
611s > 
611s 
611s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"
611s Copyright (C) 2025 The R Foundation for Statistical Computing
611s Platform: aarch64-unknown-linux-gnu
611s 
611s R is free software and comes with ABSOLUTELY NO WARRANTY.
611s You are welcome to redistribute it under certain conditions.
611s Type 'license()' or 'licence()' for distribution details.
611s 
611s R is a collaborative project with many contributors.
611s Type 'contributors()' for more information and
611s 'citation()' on how to cite R or R packages in publications.
611s 
611s Type 'demo()' for some demos, 'help()' for on-line help, or
611s 'help.start()' for an HTML browser interface to help.
611s Type 'q()' to quit R.
611s 
612s > library(ade4)
612s > library(adegraphics)
612s Registered S3 methods overwritten by 'adegraphics':
612s   method         from
612s   biplot.dudi    ade4
612s   kplot.foucart  ade4
612s   kplot.mcoa     ade4
612s   kplot.mfa      ade4
612s   kplot.pta      ade4
612s   kplot.sepan    ade4
612s   kplot.statis   ade4
612s   scatter.coa    ade4
612s   scatter.dudi   ade4
612s   scatter.nipals ade4
612s   scatter.pco    ade4
612s   score.acm      ade4
612s   score.mix      ade4
612s   score.pca      ade4
612s   screeplot.dudi ade4
612s 
612s Attaching package: 'adegraphics'
612s 
612s > library(sp)
612s The following objects are masked from 'package:ade4':
612s 
612s     kplotsepan.coa, s.arrow, s.class, s.corcircle, s.distri, s.image,
612s     s.label, s.logo, s.match, s.traject, s.value, table.value,
612s     triangle.class
612s 
612s > library(lattice)
612s > 
612s > pdf("nbgraph.pdf")
612s > 
612s > if(require(spdep)) {
612s + data(elec88, package = "ade4")
612s + coords <- sp::coordinates(elec88$Spatial)
612s + 
612s + xyplot(coords[, 2] ~ coords[, 1],
612s +   		 panel = function(...) {adeg.panel.nb(elec88$nb, coords)})
612s + 
612s + g1 <- s.label(coords, nb = elec88$nb, porigin.include = F, plabels.cex = 0.7, 
612s +               ppoints.cex = 2, Sp = elec88$Spatial, pSp.col = "red", pSp.alpha = 0.5)
612s + }
612s Loading required package: spdep
612s Loading required package: spData
612s To access larger datasets in this package, install the spDataLarge
612s package with: `install.packages('spDataLarge',
612s repos='https://nowosad.github.io/drat/', type='source')`
612s Loading required package: sf
613s Linking to GEOS 3.14.1, GDAL 3.12.1, PROJ 9.7.0; sf_use_s2() is TRUE
613s 
613s Attaching package: 'spdep'
613s 
613s The following object is masked from 'package:ade4':
613s 
613s     mstree
613s 
613s > 
613s 
613s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"
613s Copyright (C) 2025 The R Foundation for Statistical Computing
613s Platform: aarch64-unknown-linux-gnu
613s 
613s R is free software and comes with ABSOLUTELY NO WARRANTY.
613s You are welcome to redistribute it under certain conditions.
613s Type 'license()' or 'licence()' for distribution details.
613s 
613s R is a collaborative project with many contributors.
613s Type 'contributors()' for more information and
613s 'citation()' on how to cite R or R packages in publications.
613s 
613s Type 'demo()' for some demos, 'help()' for on-line help, or
613s 'help.start()' for an HTML browser interface to help.
613s Type 'q()' to quit R.
613s 
613s > library(ade4)
613s > library(adegraphics)
614s Registered S3 methods overwritten by 'adegraphics':
614s   method         from
614s   biplot.dudi    ade4
614s   kplot.foucart  ade4
614s   kplot.mcoa     ade4
614s   kplot.mfa      ade4
614s   kplot.pta      ade4
614s   kplot.sepan    ade4
614s   kplot.statis   ade4
614s   scatter.coa    ade4
614s   scatter.dudi   ade4
614s   scatter.nipals ade4
614s   scatter.pco    ade4
614s   score.acm      ade4
614s   score.mix      ade4
614s   score.pca      ade4
614s   screeplot.dudi ade4
614s 
614s Attaching package: 'adegraphics'
614s 
614s The following objects are masked from 'package:ade4':
614s 
614s     kplotsepan.coa, s.arrow, s.class, s.corcircle, s.distri, s.image,
614s > library(sp)
614s > pdf("panelSpatial.pdf")
614s     s.label, s.logo, s.match, s.traject, s.value, table.value,
614s     triangle.class
614s 
614s > 
614s > ## ex1
614s > data(mafragh, package = "ade4")
614s > dfxy1 <- coordinates(mafragh$Spatial)
614s > g1 <- s.label(dfxy1, Sp = mafragh$Spatial, pSp.col = colorRampPalette(c("yellow", "blue"))(97), pgrid.draw = FALSE, plabels.cex = 0)
614s > 
614s > 
614s > ## ex2
614s > data(meuse, package = "sp")
614s > coordinates(meuse) <- ~ x + y
614s > data(meuse.grid, package = "sp")
614s > m <- SpatialPixelsDataFrame(points = meuse.grid[c("x", "y")], data = meuse.grid)
614s > data(meuse.riv)
614s > meuse.sr <- SpatialPolygons(list(Polygons(list(Polygon(meuse.riv)), "meuse.riv")))
614s > 
614s > scale1 <- list("SpatialPolygonsRescale", offset = c(179900, 329600), scale = 500, fill = c("transparent", "black"), layout.scale.bar())
614s > text11 <- list("sp.text", c(179900, 329700), "0")
614s > text21 <- list("sp.text", c(180400, 329700), "500 m")
614s > arrow1 <- list("SpatialPolygonsRescale", offset = c(178750, 332500), scale = 400, layout.north.arrow())
614s > river <- list("sp.polygons", meuse.sr, fill = "lightblue")
614s > dfxy2 <- as.data.frame(coordinates(meuse))
614s > g2 <- s.value(dfxy2, z = meuse[, 1]$cadmium, sp.layout = list(scale1, text11, text21, arrow1, river), Sp = m)
614s > 
614s > fac <- meuse@data$ffreq
614s > levels(fac)[1] <- "1 in 2 years"
614s > levels(fac)[2] <- "1 in 10 years"
614s > levels(fac)[3] <- "1 in 50 years"
614s > arrow2 <- list("SpatialPolygonsRescale", layout.north.arrow(), offset = c(181750, 330000), scale = 400)
614s > scale2 <- list("SpatialPolygonsRescale", layout.scale.bar(), offset =  c(178050, 333600), scale = 500, fill = c("transparent", "black"))
614s > text12 <- list("sp.text", c(178050, 333700), "0")
614s > text22 <- list("sp.text", c(178550, 333700), "500 m")
614s > g3 <- s.class(dfxy2, fac = fac, sp.layout = list(scale2, text12, text22, arrow2, river), starSize = 1, col = c(1, 2, 4), pellipses.col = c(1, 2, 4), 
614s +   pellipses.alpha = 0.7, plines.lty = 3, psub.text = "Flooding frequency \n near the Meuse river", psub.pos = c(0.2, 0.88), pgrid.text.cex = 0,
614s +   porigin.include = FALSE, Sp = meuse.sr)
614s > 
614s > ## ex3
614s > if(require(Guerry)) {
614s +   data(gfrance85)
614s + 
614s +   dfxy4 <- coordinates(gfrance85)
614s +   region.names <- data.frame(gfrance85)[, 5]
614s +   col.region <- colors()[c(149, 254, 468, 552, 26)]
614s +   g4 <- s.class(dfxy4, region.names, ellip = 0, star = 0, col = col.region, Sp = gfrance85, pSp.col = col.region[region.names], porig.inclu = F)
614s + }
614s Loading required package: Guerry
615s > 
615s > ## ex4
615s > library(sp)
615s > library(lattice)
615s > 
615s > data(elec88, package = "ade4")
615s > sp <- elec88$Spatial
615s > 
615s > g5 <- xyplot(1 ~ 1, xlim = bbox(sp)[1, ], ylim = bbox(sp)[2, ], panel = function(...) {adeg.panel.Spatial(SpObject = sp, col = "black", border = "black")})
615s > g6 <- xyplot(1 ~ 1, xlim = bbox(sp)[1, ], ylim = bbox(sp)[2, ], panel = function(...) {adeg.panel.Spatial(sp, col = 1:14, border = "black")})
615s > g7 <- xyplot(1 ~ 1, xlim = bbox(sp)[1, ], ylim = bbox(sp)[2, ], aspect = "iso", panel = function(...) {sp.polygons(sp, col = "black", fill = 1:5)})
615s > g8 <- xyplot(1 ~ 1, xlim = bbox(sp)[1, ], ylim = bbox(sp)[2, ], panel = function(...) {adeg.panel.Spatial(SpObject = sp, col = "black", border = "blue")})
615s > g9 <- xyplot(1 ~ 1, xlim = bbox(sp)[1, ], ylim = bbox(sp)[2, ], panel = function(...) {adeg.panel.Spatial(SpObject = sp, col = "black", border = "blue")})
615s > #g10 <- s.label(cbind(-80, 35), Sp = nc)
615s > #g11 <- s.label(cbind(-80, 35), Sp = sp)
615s > 
615s > 
615s > ## ex5
615s > data(jv73, package = "ade4")
615s > g12 <- s.label(jv73$xy, Sp = jv73$Spatial)
615s > g13 <- s.label(jv73$xy, Sp = jv73$Spatial, pSp.col = "red")
615s > 
615s > spoints <- SpatialPoints(jv73$xy)
615s > g14 <- s.label(jv73$xy, Sp = spoints, plab.cex = 0, ppoin.cex = 0, pSp.col = 1)
615s > 
615s > sgrid <- SpatialGrid(GridTopology(c(0, 0), c(1, 1), c(3, 5)))
615s > xyplot(0:5 ~ 0:3, panel = function(...) sp.grid(sgrid, col = 1:2))
615s > 
615s > nc <- SpatialGridDataFrame(getGridTopology(sgrid), data = data.frame(matrix(1:15, ncol = 1)))
615s > xyplot(0:5 ~ 0:3, panel = function(...) sp.grid(nc, col = 1, at = pretty(rnorm(15), 2), col.region = 2:3))
615s > xyplot(0:5 ~ 0:3, panel = function(...) adeg.panel.Spatial(nc, col = 1:3))
615s > xyplot(0:5 ~ 0:3, panel = function(...) adeg.panel.Spatial(nc, col = 1:2))
615s > 
615s > 
615s > ## ex6
615s > mysp <- SpatialPointsDataFrame(matrix(rnorm(20), 10), data.frame(matrix(rnorm(20), 10)))
615s > s.Spatial(mysp)
615s > s.Spatial(mysp, col = c("red", "blue"))
616s > s.Spatial(mysp, ppoints.cex = 2)
616s > s.Spatial(mysp, ppoints.alpha = 0.5)
616s > s.Spatial(mysp, symbol = "circle")
616s > s.Spatial(mysp, method = "color", ppalette.quanti = colorRampPalette(c("red", "white", "blue")))
616s > 
616s 
616s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"
616s Copyright (C) 2025 The R Foundation for Statistical Computing
616s Platform: aarch64-unknown-linux-gnu
616s 
616s R is free software and comes with ABSOLUTELY NO WARRANTY.
616s You are welcome to redistribute it under certain conditions.
616s Type 'license()' or 'licence()' for distribution details.
616s 
616s R is a collaborative project with many contributors.
616s Type 'contributors()' for more information and
616s 'citation()' on how to cite R or R packages in publications.
616s 
616s Type 'demo()' for some demos, 'help()' for on-line help, or
616s 'help.start()' for an HTML browser interface to help.
616s Type 'q()' to quit R.
616s 
616s > library(ade4)
616s > library(adegraphics)
616s Registered S3 methods overwritten by 'adegraphics':
616s   method         from
616s   biplot.dudi    ade4
616s   kplot.foucart  ade4
616s   kplot.mcoa     ade4
616s   kplot.mfa      ade4
616s   kplot.pta      ade4
616s   kplot.sepan    ade4
616s   kplot.statis   ade4
616s   scatter.coa    ade4
616s   scatter.dudi   ade4
616s   scatter.nipals ade4
616s   scatter.pco    ade4
616s   score.acm      ade4
616s   score.mix      ade4
616s   score.pca      ade4
616s   screeplot.dudi ade4
617s 
617s Attaching package: 'adegraphics'
617s 
617s > pdf("parameter.pdf")
617s The following objects are masked from 'package:ade4':
617s 
617s     kplotsepan.coa, s.arrow, s.class, s.corcircle, s.distri, s.image,
617s     s.label, s.logo, s.match, s.traject, s.value, table.value,
617s     triangle.class
617s 
617s > 
617s > adegparold <- adegpar()
617s > b1 <- length(adegraphics:::separation(plines = list(col = "blue"), plab.bo.dra = FALSE, plab = list(orien = F))$rest) == 0
617s > b2 <- length(adegraphics:::separation(plines = list(col = "blue", lwd = c(1:5)), parr.end = NA, plab.boxes.dr = FALSE)$rest) == 0
617s > b3 <- length(adegraphics:::separation(plot.li = list(col = "blue", lwd = c(1:5)), par.end = NA, pl.boxes.draw = FALSE, pattern = 1)$rest) == 2
617s > b4 <- length(adegraphics:::separation(plot.li = list(col = "blue", lwd = c(1:5)), par.end = NA, pl.boxes.draw = FALSE, pattern = 0)$rest) == 2
617s > b5 <- length(adegraphics:::separation()) == 2
617s > b6 <- length(adegraphics:::separation(par.sub.text = list("lineheight" = 5), pattern = 1)$rest) == 0
617s > b7 <- names(adegraphics:::separation(toto = "rienavoir!")$rest) == "toto"
617s > b8 <- names(adegraphics:::separation(toto = "rienavoir!", pattern = 1)$rest) == "toto"
617s > 
617s > l1 <- list(parrow = list(col = "blue", lwd = c(1:5), end = NA), plboxes.draw = FALSE, pattern = 1)
617s > sep1 <- adegraphics:::separation(l1)  ## no recognition of "pattern" in a list
617s > 
617s > l2 <- list("parrow.lwd", "plboxes.draw")
617s > sep2 <- adegraphics:::separation(l2)
617s > 
617s > sep3 <- adegraphics:::separation("plboxes" = list("draw" = FALSE, "col"))
617s > sep4 <- adegraphics:::separation("plboxes" = list("draw" = FALSE, "col" = 2))
617s > sep5 <- adegraphics:::separation(pla.box = list(col = 1:5))
617s > sep6 <- adegraphics:::separation(pla.box.col = c(1:5))
617s > sep7 <- adegraphics:::separation(pla = list(box.col = 1:5))  ## don't match
617s > 
617s > 
617s > ## adegpar test
617s > ad1 <- adegpar()
617s > ad2 <- adegpar("paxes.draw")
617s > ad3 <- adegpar("paxes.draw", "psub.cex")
617s > 
617s > ad4 <- adegpar("psub.cex" = 5)
617s > ad5 <- adegpar("psub.cex" = 5, paxes.draw = FALSE)
617s > ad6 <- adegpar("psub")
617s > ad7 <- adegpar("psub.cex", "plabe.boxes")
617s > 
617s > ad8 <- adegpar(ppoints = list(col = "yellow"), pgrid.space = 4, plines = list(lwd = c(1:5)))
617s > ad9 <- adegpar(ppoints = list(col = "red"), pgrid = list(nint = 12), plines = list(lwd = c(1:5)))
617s > ad10 <- adegpar("ppoints.col", "pgrid.nint", "plines")
617s > 
617s > ad11 <- adegpar(paxes = list("x"), pgrid = list("nint", "col"))
617s > ad12 <- adegpar(list(pellip = list(col = "red"), grid.nint = 8, plines = list(lwd = c(1:5))))
617s > ad13 <- adegpar(paxes = list("x"), pgrid = list("nint", "col"), "plines", "pellipse")
617s > 
617s > ad14 <- adegpar(plegend.drawKey = FALSE)
617s > ad15 <- adegpar(list(paxes = list(col = "white"), pgrid.nint = 6, plines = list(lwd = c(1:5))))
617s > ad16 <- adegpar(paxes = list(x = list(draw = TRUE)))
617s > 
617s > adegpar(adegparold)
617s > 
617s > ## merging list
617s > l3 <- list(plabels = list(boxes = list(col = "white", alpha = 1)), plabels = list(cex = 2), plabels = list(col = "red"))
617s > adegraphics:::.mergingList(l3)
617s $plabels
617s $plabels$boxes
617s $plabels$boxes$col
617s [1] "white"
617s 
617s $plabels$boxes$alpha
617s [1] 1
617s 
617s 
617s $plabels$cex
617s [1] 2
617s 
617s $plabels$col
617s [1] "red"
617s 
617s 
617s > adegraphics:::.mergingList(list(plabels = list(cex = 3)))
617s $plabels
617s $plabels$cex
617s [1] 3
617s 
617s 
617s > 
617s > 
617s > ## update parameters in graphics
617s > cha <- rep(LETTERS, length.out = 100)
617s > xy <- cbind.data.frame(runif(length(cha)), runif(length(cha)))
617s > g1 <- s.label(xy, labels = cha, paxes.draw = TRUE, plabels.cex = runif(length(cha), 0.5, 1.5))
617s > update(g1, paxes = list(aspect = "fill", draw = TRUE, x = list(draw = FALSE)), 
617s +   pgrid = list(col = "black", lwd = 2, lty = 5), 
617s +   plabels = list(col = 1:4, alpha = 0.5, cex = 2, boxes = list(border = "blue", col = "antiquewhite", alpha = 0.2, lwd = 2.5, lty = 5))) 
617s > 
617s > g2 <- s.label(xy, labels = cha)
617s > update(g2, paxes.draw = FALSE, pgrid = list(col = "blue", lwd = 2, lty = 5, text = list(pos = "bottomright", cex = 2, col = "green")))
617s > update(g2, porigin = list(alpha = 0.5, col = "red", lty = 5 , lwd = 2, origin = c(0.6, 0.1)), pgrid.lwd = 0.5)
617s > update(g2, psub = list(text = "parameters", cex = 2, col = "red", position = "topright"))
617s > update(g2, plabels.cex = 0, ppoints = list(alpha = 0.4, cex = 2, col = "red", fill = "blue", pch = 21))
617s > 
617s > 
617s > ## from tdr641
617s > data(doubs, package = "ade4")
618s > dudi1 <- ade4::dudi.pca(doubs$env, scale = T, scannf = F, nf = 3)
618s > dudi2 <- ade4::dudi.pca(doubs$fish, scale = T, scannf = F, nf = 2)
618s > coin1 <- ade4::coinertia(dudi1, dudi2, scannf = F, nf = 2)
618s > g3 <- s.arrow(coin1$l1, plabels.cex = .87)
618s > update(g3, plines = list(col = "blue", lwd = 2, lty = 3), parr.end = "both", parr = list(angle = 25, length = 0.5))
618s > 
618s > ## with spatial object
618s > data(elec88, package = "ade4")
618s > g4 <- s.label(elec88$xy, label = as.character(1:nrow(elec88$xy)), porigin.include = FALSE, Sp = elec88$Spatial, pSp.col = colorRampPalette(c("yellow", "blue"))(5), pgrid.draw = TRUE)
618s > update(g4, pSp = list(col = "yellow", border = "blue", lwd = 2, lty = 5, alpha = 0.01)) ## don't match : to solve
619s > 
619s > ## plabels parameter
619s > data(tortues, package = "ade4")
619s > pturtles <- tortues
619s > names(pturtles) <- c("length", "width", "height", "sex")
619s > sex <- pturtles$sex
619s > sexcol <- ifelse(sex == "M", "blue", "red")
619s > measures <- pturtles[, 1:3]
619s > pca1 <- ade4::dudi.pca(measures, scann = FALSE, nf = 3)
619s > g5 <- scatter(pca1, row.plabel.cex = 0, col.plabel.cex = c(1, 2, 3), posieig = "none", col.plabel.col = c("red", "blue", "green"))
619s > 
619s 
619s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"
619s Copyright (C) 2025 The R Foundation for Statistical Computing
619s Platform: aarch64-unknown-linux-gnu
619s 
619s R is free software and comes with ABSOLUTELY NO WARRANTY.
619s You are welcome to redistribute it under certain conditions.
619s Type 'license()' or 'licence()' for distribution details.
619s 
619s R is a collaborative project with many contributors.
619s Type 'contributors()' for more information and
619s 'citation()' on how to cite R or R packages in publications.
619s 
619s Type 'demo()' for some demos, 'help()' for on-line help, or
619s 'help.start()' for an HTML browser interface to help.
619s Type 'q()' to quit R.
619s 
619s > library(adegraphics)
619s Registered S3 methods overwritten by 'adegraphics':
619s   method         from
619s   biplot.dudi    ade4
619s   kplot.foucart  ade4
619s   kplot.mcoa     ade4
619s   kplot.mfa      ade4
619s   kplot.pta      ade4
619s   kplot.sepan    ade4
619s   kplot.statis   ade4
619s   scatter.coa    ade4
619s   scatter.dudi   ade4
619s   scatter.nipals ade4
619s   scatter.pco    ade4
619s   score.acm      ade4
619s   score.mix      ade4
619s   score.pca      ade4
619s   screeplot.dudi ade4
619s > pdf("s.arrow.pdf")
619s > 
619s > ## ex1 : from tdr641
619s > data(doubs, package = "ade4") 
619s > dudi1 <- ade4::dudi.pca(doubs$env, scale = T, scan = F, nf = 3)
619s > dudi2 <- ade4::dudi.pca(doubs$fish, scale = T, scan = F, nf = 2)
619s > coin1 <- ade4::coinertia(dudi1, dudi2, scan = F, nf = 2)
619s > g1 <- s.arrow(coin1$l1, plabels.cex = 0.87)
620s > g2 <- s.arrow(coin1$c1, plabels.cex = 1)
620s > 
620s > ## ex2 : from bs81
620s > data(granulo, package = "ade4")
620s > w <- data.frame(t(apply(granulo$tab, 1, function(x) x / sum(x))))
620s > g3 <- s.arrow(ade4::dudi.pca(data.frame(w), scan = F, nf = 2)$co)
620s > 
620s > wtr <- data.frame(t(w))
620s > wmoy <- data.frame(matrix(apply(wtr, 1, mean), 1))
620s > dudi3 <- ade4::dudi.pca(w, scal = FALSE, scan = FALSE)
620s > wmoy <- ade4::suprow(dudi3, wmoy)$lisup
620s > 
620s > g4 <- s.arrow(dudi3$c1, plabels.cex = 1.5)
620s > g4 <- s.distri(dudi3$c1, wtr, starSize = 0.33, ellipseSize = 0, add = TRUE, plabels.cex = 1)
620s > g4 <- s.label(wmoy, ppoint.cex = 5, plabels.cex = 0, add = TRUE)
620s > 
620s > ## ex3
620s > data(deug, package = "ade4")
620s > pca1 <- ade4::dudi.pca(deug$tab, scal = FALSE, center = deug$cent, scan = FALSE)
620s > g5 <- s.arrow(40 * pca1$c1)
620s > 
620s > ## ex4
620s > xy <- cbind(rnorm(50), rnorm(50))
620s > g6 <- s.arrow(xy, plabels.cex = 0.9, parrows = list(angle = 20))
620s > 
620s 
620s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"
620s Copyright (C) 2025 The R Foundation for Statistical Computing
620s Platform: aarch64-unknown-linux-gnu
620s 
620s R is free software and comes with ABSOLUTELY NO WARRANTY.
620s You are welcome to redistribute it under certain conditions.
620s Type 'license()' or 'licence()' for distribution details.
620s 
620s R is a collaborative project with many contributors.
620s Type 'contributors()' for more information and
620s 'citation()' on how to cite R or R packages in publications.
620s 
620s Type 'demo()' for some demos, 'help()' for on-line help, or
620s 'help.start()' for an HTML browser interface to help.
620s Type 'q()' to quit R.
620s 
620s > library(adegraphics)
621s Registered S3 methods overwritten by 'adegraphics':
621s   method         from
621s   biplot.dudi    ade4
621s   kplot.foucart  ade4
621s   kplot.mcoa     ade4
621s   kplot.mfa      ade4
621s   kplot.pta      ade4
621s   kplot.sepan    ade4
621s   kplot.statis   ade4
621s   scatter.coa    ade4
621s   scatter.dudi   ade4
621s   scatter.nipals ade4
621s   scatter.pco    ade4
621s   score.acm      ade4
621s   score.mix      ade4
621s   score.pca      ade4
621s   screeplot.dudi ade4
621s > pdf("s.class.pdf")
621s > 
621s > xy0 <- cbind.data.frame(x = runif(20, -1, 1), y = runif(20, -1, 6))
621s > basic <- s.class(xy0, fac = factor(rep(c("A", "B"), le = 20)), chull = 0, star = 0)
621s > 
621s > xy1 <- cbind.data.frame(x = runif(200, -1, 1), y = runif(200, -1, 6))
621s > fac1 <- factor(xy1$x > 0) : factor(xy1$y > 0)
621s > g1 <- s.class(xy1, fac = fac1, storeData = F, col = 1:4, pbackground.box = T, pbackground.col = grey(0.85), paxes.draw = T, ell = 0)
621s > 
621s > ## multiaxis
621s > xy2 <- cbind.data.frame(x = runif(200, -1, 1), y = runif(200, -2, 2), y2 = runif(200, -0.5, .5))
621s > fac2 <- factor(xy2$x > 0) 
621s > g2 <- s.class(xy2, fac = fac2, xax = 1, yax = 2:3, storeData = F, plot = F)
621s > print(g2)
621s > 
621s > ## insertion
621s > print(ADEgS(list(g1, g2), posi = rbind(c(0, 0, 1, 1), c(0.7, 0.5, 1, 0.9))))
621s > 
621s > ## color test
621s > g3 <- s.class(xy1, fac = fac2, psub.text = "Graphic 3", "ppoints.col" = 1:5, plabels.boxes = list(col = "white", alpha = 0.8), pellipses.col = 1:5, col = 1:5)
622s > 
622s > ## test convex hull and parameters
622s > xy4 <- cbind.data.frame(x = runif(200, -1, 1), y = runif(200, -1, 1))
622s > fac4 <- factor(xy4$x > 0) : factor(xy4$y > 0)
622s > col <- c("black", "red", "green", "blue")
622s > g4 <- s.class(xy4, fac4, ppoints.cex = 1.5, chull = T, ellipseSize = 0, starSize = 0, ppolygon = list(border = 4:1, col = 1:4, lty = 1:4, lwd = 2, alpha = 0.4))
622s > 
622s > 
622s 
622s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"
622s Copyright (C) 2025 The R Foundation for Statistical Computing
622s Platform: aarch64-unknown-linux-gnu
622s 
622s R is free software and comes with ABSOLUTELY NO WARRANTY.
622s You are welcome to redistribute it under certain conditions.
622s Type 'license()' or 'licence()' for distribution details.
622s 
622s R is a collaborative project with many contributors.
622s Type 'contributors()' for more information and
622s 'citation()' on how to cite R or R packages in publications.
622s 
622s Type 'demo()' for some demos, 'help()' for on-line help, or
622s 'help.start()' for an HTML browser interface to help.
622s Type 'q()' to quit R.
622s 
622s > library(adegraphics)
622s Registered S3 methods overwritten by 'adegraphics':
622s   method         from
622s   biplot.dudi    ade4
622s   kplot.foucart  ade4
622s   kplot.mcoa     ade4
622s   kplot.mfa      ade4
622s   kplot.pta      ade4
622s   kplot.sepan    ade4
622s   kplot.statis   ade4
622s   scatter.coa    ade4
622s   scatter.dudi   ade4
622s   scatter.nipals ade4
622s   scatter.pco    ade4
622s   score.acm      ade4
622s   score.mix      ade4
622s   score.pca      ade4
622s   screeplot.dudi ade4
622s > pdf("s.corcircle.pdf")
622s > data(olympic, package = "ade4")
622s > 
622s > dudi1 <- ade4::dudi.pca(olympic$tab, scan = FALSE) # a normed PCA
622s > g1 <- s.corcircle(dudi1$co, lab = names(olympic$tab))
622s > 
622s > g2 <- s.corcircle(dudi1$co, lab = names(olympic$tab), fullcircle = T)
622s > g3 <- s.corcircle(dudi1$co, lab = names(olympic$tab), fullcircle = FALSE)
623s > g4 <- s.corcircle(dudi1$co, lab = names(olympic$tab), pback.col = "red", pbackground.box = FALSE)
623s > 
623s 
623s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"
623s Copyright (C) 2025 The R Foundation for Statistical Computing
623s Platform: aarch64-unknown-linux-gnu
623s 
623s R is free software and comes with ABSOLUTELY NO WARRANTY.
623s You are welcome to redistribute it under certain conditions.
623s Type 'license()' or 'licence()' for distribution details.
623s 
623s R is a collaborative project with many contributors.
623s Type 'contributors()' for more information and
623s 'citation()' on how to cite R or R packages in publications.
623s 
623s Type 'demo()' for some demos, 'help()' for on-line help, or
623s 'help.start()' for an HTML browser interface to help.
623s Type 'q()' to quit R.
623s 
623s > library(adegraphics)
623s Registered S3 methods overwritten by 'adegraphics':
623s   method         from
623s   biplot.dudi    ade4
623s   kplot.foucart  ade4
623s   kplot.mcoa     ade4
623s   kplot.mfa      ade4
623s   kplot.pta      ade4
623s   kplot.sepan    ade4
623s   kplot.statis   ade4
623s   scatter.coa    ade4
623s   scatter.dudi   ade4
623s   scatter.nipals ade4
623s   scatter.pco    ade4
623s   score.acm      ade4
623s   score.mix      ade4
623s   score.pca      ade4
623s   screeplot.dudi ade4
623s > pdf("s.density.pdf")
623s > 
623s > xx1 <- rnorm(1000, 1, 2)
623s > yy1 <- rnorm(1000, 1, 2)
623s > 
623s > g1 <- s.density(cbind(xx1, yy1), paxes.draw = T, gridsize = c(40, 40))
623s > g2 <- s.density(cbind(xx1, yy1), paxes.draw = T, gridsize = c(80, 80), col = colorRampPalette(c("red", "blue"))(58), storeData = FALSE, region = TRUE)
624s > g3 <- s.density(cbind(yy1 + 3, xx1 + 3), gridsize = c(400, 400))
624s > g4 <- s.density(cbind(xx1, yy1), paxes.draw = T, gridsize = c(200, 200), add = TRUE)
624s > g5 <- s.density(cbind(c(rnorm(50000, 1, 1), rnorm(50000, -1, 1)), c(rnorm(50000, -1, 0.5), rnorm(50000, 1, 0.5))), paxes.draw = T, gridsize = c(200, 200), region = TRUE, contour = TRUE, plabels.cex = 1, plabels.srt = "vertial")
624s > g6 <- s.density(cbind(rnorm(300, 3, 0.3), rnorm(300, -2, 0.5)), gridsize = c(500, 500), thres = 0.01, nr = 10, regions = list(alpha = 0.5), col = colorRampPalette(c("red", "blue"))(108))
626s > g7 <- s.density(cbind(c(rnorm(50000, 1, 1), rnorm(50000, -1, 1)), c(rnorm(50000, -1, 0.5), rnorm(50000, 1, 0.5))), paxes.draw = T, gridsize = c(100, 100), region = TRUE, contour = TRUE, plabels.cex = 1, nclass = 5)
626s > 
626s 
626s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"
626s Copyright (C) 2025 The R Foundation for Statistical Computing
626s Platform: aarch64-unknown-linux-gnu
626s 
626s R is free software and comes with ABSOLUTELY NO WARRANTY.
626s You are welcome to redistribute it under certain conditions.
626s Type 'license()' or 'licence()' for distribution details.
626s 
626s R is a collaborative project with many contributors.
626s Type 'contributors()' for more information and
626s 'citation()' on how to cite R or R packages in publications.
626s 
626s Type 'demo()' for some demos, 'help()' for on-line help, or
626s 'help.start()' for an HTML browser interface to help.
626s Type 'q()' to quit R.
626s 
626s > library(adegraphics)
626s Registered S3 methods overwritten by 'adegraphics':
626s   method         from
626s   biplot.dudi    ade4
626s   kplot.foucart  ade4
626s   kplot.mcoa     ade4
626s   kplot.mfa      ade4
626s   kplot.pta      ade4
626s   kplot.sepan    ade4
626s   kplot.statis   ade4
626s   scatter.coa    ade4
626s   scatter.dudi   ade4
626s   scatter.nipals ade4
626s   scatter.pco    ade4
626s   score.acm      ade4
626s   score.mix      ade4
626s   score.pca      ade4
626s   screeplot.dudi ade4
626s > pdf("s.distri.pdf")
627s > 
627s > xy5 <- cbind.data.frame(x = runif(200, -1, 1), y = runif(200, -1, 1))
627s > w1 <- as.numeric((xy5$x > 0) & (xy5$y > 0))
627s > w2 <- ((xy5$x > 0) & (xy5$y < 0)) * (1 - xy5$y) * xy5$x
627s > w3 <- ((xy5$x < 0) & (xy5$y > 0)) * (1 - xy5$x) * xy5$y
627s > w4 <- ((xy5$x < 0) & (xy5$y < 0)) * xy5$y * xy5$x
627s > distri <- data.frame(a = w1 / sum(w1), b = w2 / sum(w2), c = w3 / sum(w3), d = w4 / sum(w4))
627s > g5 <- s.distri(xy5, distri, plabels.boxes = list(col = "white", alpha = 1), plabels.cex = 2, plabels.col = 1:5)
627s > 
627s > data(rpjdl, package = "ade4")
627s > xy6 <- ade4::dudi.coa(rpjdl$fau, scan = FALSE)$li + 3
627s > g6 <- s.distri(xy6, rpjdl$fau[, 5], ellipseSize = 1.5, psub = list(text = rpjdl$frlab[5], cex = 2, pos = c(0.2, 0.1)))
627s > g7 <- s.distri(xy6, rpjdl$fau[, 5], ellipseSize = 1.5, psub = list(text = rpjdl$frlab[5], cex = 2, pos = c(0.2, 0.1)), porigin = list(include = FALSE), pellipses.axes.col = "blue")
627s > 
627s > ## test add
627s > g8 <- s.distri(xy6, rpjdl$fau[, 5], ellipseSize = 1.5, psub = list(text = rpjdl$frlab[5], cex = 2, pos = c(0.2, 0.1)), porigin.include = FALSE, pellipses = list(col = "blue"))
627s > g9 <- s.distri(xy6, rpjdl$fau[, 12], ellipseSize = 1.5, psub = list(text = rpjdl$frlab[5], cex = 2, pos = c(0.2, 0.1)), porigin.include = FALSE, pellipses = list(col = "red"), add = TRUE)
627s > show(g9) ## g8 is a superposition, an ADEgS object 
627s > 
627s > ## add
627s > index <- c(1, 5, 8, 20, 21, 23, 26, 33, 36, 44, 47, 49)
627s > col <- colorRampPalette(c("blue", "red", "orange"))(49)
627s > s.distri(xy6, rpjdl$fau[, 1], ellipseSize = 1, starSize = 0, porigin.include = FALSE, pellipses = list(col = col[1], alpha = 0.3))
627s > for(i in index[-1])
627s +    s.distri(xy6, rpjdl$fau[, i], ellipseSize = 1, starSize = 0, porigin.include = FALSE, pellipses = list(col = col[i], alpha = 0.3), add = TRUE)
627s > 
628s > current <- get("currentadeg", env = adegraphics:::.ADEgEnv)
628s > print(current[[6]])
628s > length(current) == length(index)
628s [1] TRUE
628s > 
628s 
628s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"
628s Copyright (C) 2025 The R Foundation for Statistical Computing
628s Platform: aarch64-unknown-linux-gnu
628s 
628s R is free software and comes with ABSOLUTELY NO WARRANTY.
628s You are welcome to redistribute it under certain conditions.
628s Type 'license()' or 'licence()' for distribution details.
628s 
628s R is a collaborative project with many contributors.
628s Type 'contributors()' for more information and
628s 'citation()' on how to cite R or R packages in publications.
628s 
628s Type 'demo()' for some demos, 'help()' for on-line help, or
628s 'help.start()' for an HTML browser interface to help.
628s Type 'q()' to quit R.
628s 
628s > library(adegraphics)
628s Registered S3 methods overwritten by 'adegraphics':
628s   method         from
628s   biplot.dudi    ade4
628s   kplot.foucart  ade4
628s   kplot.mcoa     ade4
628s   kplot.mfa      ade4
628s   kplot.pta      ade4
628s   kplot.sepan    ade4
628s   kplot.statis   ade4
628s   scatter.coa    ade4
628s   scatter.dudi   ade4
628s   scatter.nipals ade4
628s   scatter.pco    ade4
628s   score.acm      ade4
628s   score.mix      ade4
628s   score.pca      ade4
628s   screeplot.dudi ade4
628s > library(sp)
628s > pdf("s.image.pdf")
628s > 
628s > ## ex1
628s > xy <- data.frame(expand.grid(-3:3, -3:3))
628s > names(xy) <- c("x", "y")
628s > z <- (1 / sqrt(2)) * exp(-(xy$x ^ 2 + xy$y ^ 2) / 2)
628s > s.image(xy, z)
628s > s.image(xy, z, grid = 20)
628s > s.image(xy, z, grid = 500)
629s > 
629s > ## ex2
629s > Sr1 <- Polygon(cbind(c(0, 1, 2, 1, 2, 0 , -2, -1, -2, -1, 0), c(2.5, 1.5, 2, 0, -2, -1, -2, 0, 2, 1.5, 2.5)))    
629s > Srs1 <- Polygons(list(Sr1), ID = "stars")        
629s > SPp1 <- SpatialPolygons(list(Srs1))
629s > xy1 <- cbind(rnorm(100, 0, 1), rnorm(100, 0, 1.5))
629s > g1 <- s.image(xy1, runif(100), outsideLimits = SPp1)
629s > 
629s > ## ex3
629s > Sr2 <- Polygon(cbind(c(-0.5, 0.5, 0.5, -0.5, -0.5), c(0, 0, 1 ,1, 0)), hole = TRUE)
629s > Srs2 <- Polygons(list(Sr1, Sr2), ID = "hole")
629s > SPp2 <- SpatialPolygons(list(Srs2))
629s > xy2 <- cbind(c(rnorm(2000, 1, 0.25), rnorm(3000, -1, 1.5)), c(rnorm(2000, 1, 0.5), rnorm(3000, -1, 3)))
629s > z <- c(rnorm(2000, 12, 1), rnorm(3000, 1, 2))
629s > g2 <- s.image(xy2, z, outsideLimits = SPp2, grid = 500, xlim = c(-2.5, 2.5), ylim = c(-2, 3))
630s > 
630s 
630s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"
630s Copyright (C) 2025 The R Foundation for Statistical Computing
630s Platform: aarch64-unknown-linux-gnu
630s 
630s R is free software and comes with ABSOLUTELY NO WARRANTY.
630s You are welcome to redistribute it under certain conditions.
630s Type 'license()' or 'licence()' for distribution details.
630s 
630s R is a collaborative project with many contributors.
630s Type 'contributors()' for more information and
630s 'citation()' on how to cite R or R packages in publications.
630s 
630s Type 'demo()' for some demos, 'help()' for on-line help, or
630s 'help.start()' for an HTML browser interface to help.
630s Type 'q()' to quit R.
630s 
630s > library(adegraphics)
631s Registered S3 methods overwritten by 'adegraphics':
631s   method         from
631s   biplot.dudi    ade4
631s   kplot.foucart  ade4
631s   kplot.mcoa     ade4
631s   kplot.mfa      ade4
631s   kplot.pta      ade4
631s   kplot.sepan    ade4
631s   kplot.statis   ade4
631s   scatter.coa    ade4
631s   scatter.dudi   ade4
631s   scatter.nipals ade4
631s   scatter.pco    ade4
631s   score.acm      ade4
631s   score.mix      ade4
631s   score.pca      ade4
631s   screeplot.dudi ade4
631s > library(grid)
631s > pdf("s.label.pdf")
631s > 
631s > x0 <- runif(50, -2, 2)
631s > y0 <- runif(50, -2, 2)
631s > z <- x0 ^ 2 + y0 ^ 2
631s > dfxy1 <- data.frame(x0, y0)
631s > g1 <- s.label(dfxy1, label = as.character(z < 1), paxes.draw = TRUE, axis.text = list(col = "grey"))
631s > g2 <- s.label(dfxy1[1, ])
631s > g3 <- s.label(dfxy1[1, ], pori.incl = FALSE)
631s > g4 <- s.label(dfxy1, labels = c("", "MM", "", NA, "ooo"), plabels.optim = TRUE)
631s > g5 <- s.label(dfxy1, labels = as.character(z < 1), psub = list(text = "Subtitle", col = "blue", position = "topleft"), plabels.col = 1:5, pgrid.text.pos = c(unit(0.95, "npc"), unit(0.94, "npc")))
631s > 
631s > dfxy2 <- cbind(dfxy1, runif(50, -5, 5))
631s > g6 <- s.label(dfxy2, xax = 1, yax = 2:3, paxes.draw = TRUE, paxes.aspectratio = 1.5, plabels.cex = 0.8)
631s > 
631s > l <- ls()
631s > x1 <- runif(length(l))
631s > x2 <- runif(100)
631s > y1 <- runif(length(l))
631s > y2 <- runif(100)
631s > g7 <- s.label(cbind(x2, y2), labels = as.character((x2 * x2 + y2 * y2) < 1))
632s > g8 <- s.label(cbind(x1, y1), labels = l, add = TRUE, plabels.col = "blue")
632s > 
632s 
632s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"
632s Copyright (C) 2025 The R Foundation for Statistical Computing
632s Platform: aarch64-unknown-linux-gnu
632s 
632s R is free software and comes with ABSOLUTELY NO WARRANTY.
632s You are welcome to redistribute it under certain conditions.
632s Type 'license()' or 'licence()' for distribution details.
632s 
632s R is a collaborative project with many contributors.
632s Type 'contributors()' for more information and
632s 'citation()' on how to cite R or R packages in publications.
632s 
632s Type 'demo()' for some demos, 'help()' for on-line help, or
632s 'help.start()' for an HTML browser interface to help.
632s Type 'q()' to quit R.
632s 
632s > library(adegraphics)
632s Registered S3 methods overwritten by 'adegraphics':
632s   method         from
632s   biplot.dudi    ade4
632s   kplot.foucart  ade4
632s   kplot.mcoa     ade4
632s   kplot.mfa      ade4
632s   kplot.pta      ade4
632s   kplot.sepan    ade4
632s   kplot.statis   ade4
632s   scatter.coa    ade4
632s   scatter.dudi   ade4
632s   scatter.nipals ade4
632s   scatter.pco    ade4
632s   score.acm      ade4
632s   score.mix      ade4
632s   score.pca      ade4
632s   screeplot.dudi ade4
632s > pdf("s.logo.pdf")
632s > 
632s > ## ex1
632s > data(ggtortoises, package = "ade4")
632s > ico <- ggtortoises$ico[as.character(ggtortoises$pop$carap)]
632s > g1 <- s.logo(ggtortoises$pop, ico, pori.incl = FALSE)
632s Loading required namespace: pixmap
632s > g2 <- s.label(ggtortoises$pop, add = TRUE, plabels = list(boxes = list(alpha = 0.4, border = "transparent")))
633s > 
633s > ## ex2
633s > data(capitales, package = "ade4")
633s > index <- unlist(lapply(1:15, function(i) which(names(capitales$logo) == tolower(rownames(capitales$xy)[i]))), use.names = FALSE)
633s > g3 <- s.logo(capitales$xy, capitales$logo[index])
633s > 
633s > x <- c(0, max(capitales$area$x))
633s > y <- c(0, max(capitales$area$y))
633s > #g4 <- s.image(cbind(x, y), z = c(1, 2), outsideLimits = capitales$area, grid = 500, regions = list(col = "yellow", alpha = 0.9))
633s > #s.logo(capitales$xy, capitales$logo[index], add = TRUE)
633s > 
633s 
633s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"
633s Copyright (C) 2025 The R Foundation for Statistical Computing
633s Platform: aarch64-unknown-linux-gnu
633s 
633s R is free software and comes with ABSOLUTELY NO WARRANTY.
633s You are welcome to redistribute it under certain conditions.
633s Type 'license()' or 'licence()' for distribution details.
633s 
633s R is a collaborative project with many contributors.
633s Type 'contributors()' for more information and
633s 'citation()' on how to cite R or R packages in publications.
633s 
633s Type 'demo()' for some demos, 'help()' for on-line help, or
633s 'help.start()' for an HTML browser interface to help.
633s Type 'q()' to quit R.
633s 
633s > library(adegraphics)
633s Registered S3 methods overwritten by 'adegraphics':
633s   method         from
633s   biplot.dudi    ade4
633s   kplot.foucart  ade4
633s   kplot.mcoa     ade4
633s   kplot.mfa      ade4
633s   kplot.pta      ade4
633s   kplot.sepan    ade4
633s   kplot.statis   ade4
633s   scatter.coa    ade4
633s   scatter.dudi   ade4
633s   scatter.nipals ade4
633s   scatter.pco    ade4
633s   score.acm      ade4
633s   score.mix      ade4
633s   score.pca      ade4
633s   screeplot.dudi ade4
633s > pdf("s.match.pdf")
633s > 
633s > X <- data.frame(x = runif(50, -1, 2), y = runif(50, -1, 2))
633s > Y <- X + rnorm(100, sd = 0.3)
633s > 
633s > g1 <- s.match(X, Y, ppoints.cex = 0, col = c("blue", "red"))
633s > g2 <- s.match(X, Y, arr = FALSE, ppoints.cex = 2, ppoints.col = c("blue", "green"))
634s > g3 <- s.match(X, Y, arr = FALSE)
634s > g4 <- s.match(X, Y, arrows = TRUE, plabels = list(alpha = 1, col = "black", cex = 1), plines = list(col = "red"), panel.background = list(col = "antiquewhite"))
634s > 
634s 
634s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"
634s Copyright (C) 2025 The R Foundation for Statistical Computing
634s Platform: aarch64-unknown-linux-gnu
634s 
634s R is free software and comes with ABSOLUTELY NO WARRANTY.
634s You are welcome to redistribute it under certain conditions.
634s Type 'license()' or 'licence()' for distribution details.
634s 
634s R is a collaborative project with many contributors.
634s Type 'contributors()' for more information and
634s 'citation()' on how to cite R or R packages in publications.
634s 
634s Type 'demo()' for some demos, 'help()' for on-line help, or
634s 'help.start()' for an HTML browser interface to help.
634s Type 'q()' to quit R.
634s 
634s > library(adegraphics)
634s Registered S3 methods overwritten by 'adegraphics':
634s   method         from
634s   biplot.dudi    ade4
634s   kplot.foucart  ade4
634s   kplot.mcoa     ade4
634s   kplot.mfa      ade4
634s   kplot.pta      ade4
634s   kplot.sepan    ade4
634s   kplot.statis   ade4
634s   scatter.coa    ade4
634s   scatter.dudi   ade4
634s   scatter.nipals ade4
634s   scatter.pco    ade4
634s   score.acm      ade4
634s   score.mix      ade4
634s   score.pca      ade4
634s   screeplot.dudi ade4
634s > pdf("s.traject.pdf")
634s > 
634s > rw <- function(a){
634s +   x <- 0
634s +   for(i in 1:49)
634s +     x <- c(x, x[length(x)] + runif(1, -1, 1))
634s +   x
634s + }
634s > 
634s > x <- unlist(lapply(1:5, rw), use.names = FALSE)
634s > y <- unlist(lapply(1:5, rw), use.names = FALSE)
634s > z <- gl(5, 50)
634s > g1 <- s.traject(data.frame(x, y), z, ppoints.pch = 19:23, plines.col = rainbow(5))
635s > 
635s > x <- unlist(lapply(1:2, rw), use.names = FALSE)
635s > y <- unlist(lapply(1:2, rw), use.names = FALSE)
635s > z <- gl(2, 50)
635s > g2 <- s.traject(data.frame(x, y), z, ppoints.pch = 21:20, plines.col = 1:2)
635s > 
635s 
635s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"
635s Copyright (C) 2025 The R Foundation for Statistical Computing
635s Platform: aarch64-unknown-linux-gnu
635s 
635s R is free software and comes with ABSOLUTELY NO WARRANTY.
635s You are welcome to redistribute it under certain conditions.
635s Type 'license()' or 'licence()' for distribution details.
635s 
635s R is a collaborative project with many contributors.
635s Type 'contributors()' for more information and
635s 'citation()' on how to cite R or R packages in publications.
635s 
635s Type 'demo()' for some demos, 'help()' for on-line help, or
635s 'help.start()' for an HTML browser interface to help.
635s Type 'q()' to quit R.
635s 
635s > library(adegraphics)
635s Registered S3 methods overwritten by 'adegraphics':
635s   method         from
635s   biplot.dudi    ade4
635s   kplot.foucart  ade4
635s   kplot.mcoa     ade4
635s   kplot.mfa      ade4
635s   kplot.pta      ade4
635s   kplot.sepan    ade4
635s   kplot.statis   ade4
635s   scatter.coa    ade4
635s   scatter.dudi   ade4
635s   scatter.nipals ade4
635s   scatter.pco    ade4
635s   score.acm      ade4
635s   score.mix      ade4
635s   score.pca      ade4
635s   screeplot.dudi ade4
636s > pdf("s.value.pdf")
636s > 
636s > ## ex1
636s > xy <- cbind.data.frame(x = runif(50, -1, 1), y = runif(50, 0, 2))
636s > z <- rnorm(50)
636s > z <- sapply(z, function(X) max(X, -3))
636s > z <- sapply(z, function(X) min(X, 3))
636s > val1 <- s.value(xy, z, method = "size", symbol = "square", plot = F)
636s > val2 <- s.value(xy, z, method = "color", symbol = "square", plot = F)
636s > val3 <- s.value(xy, z, method = "size", symbol = "circle", plot = F)
636s > val4 <- s.value(xy, z, method = "color", symbol = "circle", plot = F)
636s > g1 <- ADEgS(c(val1, val2, val3, val4), positions = layout2position(matrix(c(1, 2, 3, 4), 2, 2)), add = matrix(0, ncol = 4, nrow = 4))
636s > g2 <- s.value(xy, z, method = "color", symbol = "square", breaks = c(-3, -1, -0.5, 0, 0.5, 1, 3))
636s > g3 <- s.value(xy, z, method = "color", col = colorRampPalette(c("yellow", "blue"))(6))
636s > g4 <- s.value(xy, z, method = "size", symbol = "circle", paxes.draw = FALSE)
636s > 
636s > ## ex2
636s > xx <- runif(100) * 100
636s > yy <- 1:100 
636s > zz <- 1:100
636s > breaks <- c(0, 25, 50, 75, 100)
636s > g5 <- s.value(data.frame(xx, yy), zz, breaks = breaks, method = "color", paxes.draw = TRUE,  porigin.include = FALSE)
636s > g6 <- s.value(data.frame(xx, yy), cbind(zz, rev(zz)), breaks = breaks, method = "color", col = c("blue", "red", "green", "yellow"), paxes.draw = TRUE)
636s > g7 <- s.value(data.frame(xx, yy), cbind(zz, rev(zz)), nclass = c(2, 6), method = "color", col = c("blue", "red", "pink", "green", "yellow"), paxes.draw = TRUE)
636s > 
636s > ## ex3
636s > data(rpjdl, package = "ade4")
636s > fau.coa <- ade4::dudi.coa(rpjdl$fau, scan = FALSE, nf = 3)
636s > val5 <- s.value(fau.coa$li, fau.coa$li[,3], plot = FALSE)
636s > val6 <- s.value(fau.coa$li, fau.coa$li[, 3], center = 0, method = "size", symbol = "circle", col = c("yellow", "red"), plot = FALSE)
636s > g8 <- ADEgS(c(val5, val6), positions = layout2position(matrix(c(1, 2), 1, 2)), add = matrix(0, ncol = 2, nrow = 2))
636s > 
636s > ## ex3
636s > data(doubs, package = "ade4")
636s > g9 <- s.value(doubs$xy, doubs$env[, 1:2])
637s > g10 <- s.value(doubs$xy, doubs$env)
637s > 
637s 
637s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"
637s Copyright (C) 2025 The R Foundation for Statistical Computing
637s Platform: aarch64-unknown-linux-gnu
637s 
637s R is free software and comes with ABSOLUTELY NO WARRANTY.
637s You are welcome to redistribute it under certain conditions.
637s Type 'license()' or 'licence()' for distribution details.
637s 
637s R is a collaborative project with many contributors.
637s Type 'contributors()' for more information and
637s 'citation()' on how to cite R or R packages in publications.
637s 
637s Type 'demo()' for some demos, 'help()' for on-line help, or
637s 'help.start()' for an HTML browser interface to help.
637s Type 'q()' to quit R.
637s 
637s > library(ade4)
637s > library(adegraphics)
638s Registered S3 methods overwritten by 'adegraphics':
638s   method         from
638s   biplot.dudi    ade4
638s   kplot.foucart  ade4
638s   kplot.mcoa     ade4
638s   kplot.mfa      ade4
638s   kplot.pta      ade4
638s   kplot.sepan    ade4
638s   kplot.statis   ade4
638s   scatter.coa    ade4
638s   scatter.dudi   ade4
638s   scatter.nipals ade4
638s   scatter.pco    ade4
638s   score.acm      ade4
638s   score.mix      ade4
638s   score.pca      ade4
638s   screeplot.dudi ade4
638s > pdf("s1d.barchart.pdf")
638s 
638s Attaching package: 'adegraphics'
638s 
638s The following objects are masked from 'package:ade4':
638s 
638s     kplotsepan.coa, s.arrow, s.class, s.corcircle, s.distri, s.image,
638s     s.label, s.logo, s.match, s.traject, s.value, table.value,
638s     triangle.class
638s 
638s > 
638s > ## 1 : reverse and horizontal
638s > set.seed(40)
638s > x1 <- rnorm(10)
638s > g11 <- s1d.barchart(x1)
638s > g12 <- s1d.barchart(x1, ppoly.col = "blue")
638s > 
638s > g21 <- s1d.barchart(x1, p1d.hori = FALSE, p1d.rev = TRUE)
638s > g23 <- s1d.barchart(x1, p1d.hori = FALSE, p1d.rev = FALSE)
638s > g24 <- s1d.barchart(x1, p1d.hori = TRUE, p1d.rev = TRUE)
638s > g24 <- s1d.barchart(x1, p1d.hori = TRUE, p1d.rev = FALSE)
638s > 
638s > ## 2 : at and sort
638s > data(rpjdl, package = "ade4")
638s > rpjdl.coa <- ade4::dudi.coa(rpjdl$fau, scannf = FALSE, nf = 4)
638s > nam <- rownames(rpjdl.coa$co)
638s > gg1 <- s1d.barchart(rpjdl.coa$co[, 1])
638s > gg2 <- s1d.barchart(rpjdl.coa$co[, 1], labels = nam, at = 51:1)
638s > gg3 <- s1d.barchart(rpjdl.coa$co[, 1], labels = nam, sort = TRUE)
638s > gg4 <- s1d.barchart(rpjdl.coa$co[, 1], labels = nam, sort = TRUE, at = 51:1) # 'at' is ignored
638s > gg5 <- s1d.barchart(rpjdl.coa$co, labels = nam, sort = TRUE)
638s > gg6 <- s1d.barchart(rpjdl.coa$co, labels = nam, sort = FALSE)
639s > stopifnot(gg6[[1]]@data$labels == gg6[[2]]@data$labels)
639s > 
639s 
639s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"
639s Copyright (C) 2025 The R Foundation for Statistical Computing
639s Platform: aarch64-unknown-linux-gnu
639s 
639s R is free software and comes with ABSOLUTELY NO WARRANTY.
639s You are welcome to redistribute it under certain conditions.
639s Type 'license()' or 'licence()' for distribution details.
639s 
639s R is a collaborative project with many contributors.
639s Type 'contributors()' for more information and
639s 'citation()' on how to cite R or R packages in publications.
639s 
639s Type 'demo()' for some demos, 'help()' for on-line help, or
639s 'help.start()' for an HTML browser interface to help.
639s Type 'q()' to quit R.
639s 
639s > library(adegraphics)
639s Registered S3 methods overwritten by 'adegraphics':
639s   method         from
639s   biplot.dudi    ade4
639s   kplot.foucart  ade4
639s   kplot.mcoa     ade4
639s   kplot.mfa      ade4
639s   kplot.pta      ade4
639s   kplot.sepan    ade4
639s   kplot.statis   ade4
639s   scatter.coa    ade4
639s   scatter.dudi   ade4
639s   scatter.nipals ade4
639s   scatter.pco    ade4
639s   score.acm      ade4
639s   score.mix      ade4
639s   score.pca      ade4
639s   screeplot.dudi ade4
639s > pdf("s1d.boxplot.pdf")
639s > 
639s > ## ex1
639s > x <- c(rnorm(10), rnorm(10))
639s > fact <- factor(rep(c("A", "B"), 10))
639s > g11 <- s1d.boxplot(x, fact)
639s > g12 <- s1d.boxplot(x, fact, col = TRUE)
640s > g12 <- s1d.boxplot(x, fact, col = 2:3)
640s > g12 <- s1d.boxplot(x, fact, col = TRUE, plines.col = "black")
640s > 
640s > g2 <- s1d.boxplot(x, fact, ppolygon.border = c("red", "blue"), box.rectangle = list(alpha = 1, fill = "green"))
640s > 
640s > ## ex2
640s > w1 <- rnorm(100, -1)
640s > w2 <- rnorm(100)
640s > w3 <- rnorm(100, 1)
640s > f1 <- gl(3, 100)
640s > f2 <- gl(30, 10)
640s > g3 <- s1d.boxplot(c(w1, w2, w3), f1)
640s > g4 <- s1d.boxplot(c(w1, w2, w3), f2)
640s > g5 <- s1d.boxplot(c(w1, w2, w3), f2, p1d.rug.draw = FALSE)
640s > 
640s > mat <- matrix(0, ncol = 1, nrow = 8)
640s > mat[c(2), ] <- 1
640s > mat[c(3:8), ] <- 2
640s > mat[1, ] <- 3
640s > g6 <- ADEgS(c(g3, g4, s1d.label(c(w1, w2, w3), p1d = list(rug = list(tck = 0.8), rev = TRUE), ppoints.cex = 0, plabels.cex = 0, plot = F, pgrid.draw = F)), 
640s +   layout = matrix((rev(mat)), ncol = 1))
640s > g7 <- s1d.boxplot(c(w1, w2, w3), data.frame(f1, f2))
640s > 
640s > ## ex3
640s > data(banque, package = "ade4")
640s > banque.acm <- ade4::dudi.acm(banque, scan = FALSE, nf = 4)
640s > s1d.boxplot(banque.acm$l1[, 1], banque[, 1:7], plabels.cex = 1.8)
641s > 
641s > 
641s 
641s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"
641s Copyright (C) 2025 The R Foundation for Statistical Computing
641s Platform: aarch64-unknown-linux-gnu
641s 
641s R is free software and comes with ABSOLUTELY NO WARRANTY.
641s You are welcome to redistribute it under certain conditions.
641s Type 'license()' or 'licence()' for distribution details.
641s 
641s R is a collaborative project with many contributors.
641s Type 'contributors()' for more information and
641s 'citation()' on how to cite R or R packages in publications.
641s 
641s Type 'demo()' for some demos, 'help()' for on-line help, or
641s 'help.start()' for an HTML browser interface to help.
641s Type 'q()' to quit R.
641s 
641s > library(adegraphics)
641s Registered S3 methods overwritten by 'adegraphics':
641s   method         from
641s   biplot.dudi    ade4
641s   kplot.foucart  ade4
641s   kplot.mcoa     ade4
641s   kplot.mfa      ade4
641s   kplot.pta      ade4
641s   kplot.sepan    ade4
641s   kplot.statis   ade4
641s   scatter.coa    ade4
641s   scatter.dudi   ade4
641s   scatter.nipals ade4
641s   scatter.pco    ade4
641s   score.acm      ade4
641s   score.mix      ade4
641s   score.pca      ade4
641s   screeplot.dudi ade4
641s > pdf("s1d.class.pdf")
641s > data(meau, package = "ade4")
641s > 
641s > ## ex1
641s > envpca <- ade4::dudi.pca(meau$env, scannf = FALSE)
641s > g1 <- s1d.class(envpca$li[, 1], poslab = "value", meau$design$season, col = 1:6)
641s > update(g1, p1d.horizontal = FALSE)
641s > update(g1, p1d.reverse = TRUE)
642s > g2 <- s1d.class(envpca$li[, 1], meau$design$season, col = 1:6, p1d.reverse = TRUE)
642s > g3 <- s1d.class(envpca$li[, 1], meau$design$season, col = 1:6, p1d.hori = F)
642s > 
642s > ## ex2
642s > set.seed(0)
642s > score1 <- c(rnorm(3, mean = 0, sd = 0.5), rnorm(3, mean = 1, sd = 0.5), rnorm(5, mean = 2, sd = 0.5))
642s > factor1 <- factor(rep(LETTERS[1:3], times = c(3, 3, 5)))
642s > g41 <- s1d.class(score1, factor1)
642s > g42 <- s1d.class(score1, factor1, col = 1:3)
642s > g43 <- s1d.class(score1, factor1, col = TRUE)
642s > g44 <- s1d.class(score1, factor1, col = FALSE)
642s > g45 <- s1d.class(score1, factor1, plines.col = "grey")
642s > g46 <- s1d.class(score1, factor1, plines.col = "grey", col = TRUE)
642s > 
642s > ## ex3
642s > score2 <- c(rnorm(10, mean = 0, sd = 0.5), rnorm(15, mean = -1, sd = 0.2), rnorm(10, mean = 2, sd = 0.5))
642s > factor2 <- factor(rep(c(1, 3, 2), times = c(10, 15, 10)))
642s > levels(factor2) <- c("mean0", "mean2", "mean-1")
642s > g5 <- s1d.class(score2, factor2, col = 1:3)
642s > update(g5, posla = "value")
642s > 
642s > indx <- rank(rnorm(35))
642s > factor2 <- factor2[rank(indx)]
642s > s1d.class(score2[indx], factor2[indx], col = 1:3, posla = "regular")
642s > 
642s > 
642s 
642s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"
642s Copyright (C) 2025 The R Foundation for Statistical Computing
642s Platform: aarch64-unknown-linux-gnu
642s 
642s R is free software and comes with ABSOLUTELY NO WARRANTY.
642s You are welcome to redistribute it under certain conditions.
642s Type 'license()' or 'licence()' for distribution details.
642s 
642s R is a collaborative project with many contributors.
642s Type 'contributors()' for more information and
642s 'citation()' on how to cite R or R packages in publications.
642s 
642s Type 'demo()' for some demos, 'help()' for on-line help, or
642s 'help.start()' for an HTML browser interface to help.
642s Type 'q()' to quit R.
642s 
642s > library(adegraphics)
642s Registered S3 methods overwritten by 'adegraphics':
642s   method         from
642s   biplot.dudi    ade4
642s   kplot.foucart  ade4
642s   kplot.mcoa     ade4
642s   kplot.mfa      ade4
642s   kplot.pta      ade4
642s   kplot.sepan    ade4
642s   kplot.statis   ade4
642s   scatter.coa    ade4
642s   scatter.dudi   ade4
642s   scatter.nipals ade4
642s   scatter.pco    ade4
642s   score.acm      ade4
642s   score.mix      ade4
642s   score.pca      ade4
642s   screeplot.dudi ade4
643s > pdf("s1d.density.pdf")
643s > 
643s > set.seed(40)
643s > x1 <- rnorm(1000)
643s > g11 <- s1d.density(x1)
643s > g12 <- s1d.density(x1, col = FALSE, ppoly.col = "blue", p1d.rev = TRUE)
643s > g13 <- s1d.density(x1, col = TRUE, ppoly.col = "blue", p1d.hori = FALSE)
643s > g14 <- s1d.density(x1, col = TRUE, p1d.hori = FALSE, p1d.rev = TRUE)
643s > 
643s > update(g11, ppolygons.border = "red")
643s > update(g11, col = FALSE, ppolygons.col = "black")
643s > update(g11, ppolygons.lwd = 3, ppolygons.lty = 3, ppolygons.alpha = 1)
643s > update(g11, ylim = c(-0.04, 0.5))
643s > 
643s > set.seed(50)
643s > x2 <- c(rnorm(1000, mean = -0.5, sd = 0.5), rnorm(1000, mean = 1))
643s > fact <- rep(c("A", "B"), each = 1000)
643s > g21 <- s1d.density(x2, fact, col = c("red", "blue"))
643s > g22 <- s1d.density(x2, fact, col = FALSE, ppoly.col = 2:3)
643s > g23 <- s1d.density(x2, fact, col = FALSE, ppoly.col = 2:3, p1d.rev = TRUE)
643s > g24 <- s1d.density(x2, fact, col = FALSE, ppoly.col = 2:3, p1d.horizontal = FALSE)
643s > g25 <- s1d.density(x2, fact, col = FALSE, ppoly.col = 2:3, p1d.horizontal = FALSE, p1d.rev = TRUE)
643s > 
643s > set.seed(60)
643s > x3 <- rnorm(1000)
643s > g31 <- s1d.density(x3)
643s > g32 <- s1d.density(x3, p1d.rug.draw = FALSE)
643s > g33 <- s1d.density(x3, p1d.rug.draw = FALSE, p1d.rev = TRUE)
643s > g34 <- s1d.density(x3, p1d.rug.draw = FALSE, p1d.hori = FALSE)
643s > g35 <- s1d.density(x3, p1d.rug.draw = FALSE, p1d.hori = FALSE, p1d.rev = TRUE)
643s > 
643s > update(g31, p1d.rev = TRUE)
643s > update(g32, p1d.rev = TRUE)
643s > update(g33, p1d.rev = FALSE)
643s > update(g34, p1d.rev = TRUE)
643s > update(g35, p1d.rev = FALSE)
644s > 
644s > 
644s 
644s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"
644s Copyright (C) 2025 The R Foundation for Statistical Computing
644s Platform: aarch64-unknown-linux-gnu
644s 
644s R is free software and comes with ABSOLUTELY NO WARRANTY.
644s You are welcome to redistribute it under certain conditions.
644s Type 'license()' or 'licence()' for distribution details.
644s 
644s R is a collaborative project with many contributors.
644s Type 'contributors()' for more information and
644s 'citation()' on how to cite R or R packages in publications.
644s 
644s Type 'demo()' for some demos, 'help()' for on-line help, or
644s 'help.start()' for an HTML browser interface to help.
644s Type 'q()' to quit R.
644s 
644s > library(adegraphics)
644s Registered S3 methods overwritten by 'adegraphics':
644s   method         from
644s   biplot.dudi    ade4
644s   kplot.foucart  ade4
644s   kplot.mcoa     ade4
644s   kplot.mfa      ade4
644s   kplot.pta      ade4
644s   kplot.sepan    ade4
644s   kplot.statis   ade4
644s   scatter.coa    ade4
644s   scatter.dudi   ade4
644s   scatter.nipals ade4
644s   scatter.pco    ade4
644s   score.acm      ade4
644s   score.mix      ade4
644s   score.pca      ade4
644s   screeplot.dudi ade4
644s > pdf("s1d.distri.pdf")
644s > 
644s > ## ex1
644s > score <- rnorm(10)
644s > df <- data.frame(matrix(rep(c(1, 2), 10), ncol = 2))
644s > g1 <- s1d.distri(score, df)
644s > 
644s > ## ex2
644s > set.seed(1)
644s > w <- seq(-1, 1, le = 200)
644s > distri <- data.frame(lapply(1:50, function(x) sample(200:1) * ((w >= (- x / 50)) & (w <= x / 50))))
644s > names(distri) <- paste("w", 1:50, sep = "")
644s > g2 <- s1d.distri(w, distri)
644s > g3 <- s1d.distri(w, distri, yrank = TRUE, sdS = 1.5)
645s > 
645s > g4 <- s1d.distri(w, distri, p1d.rug.draw = FALSE)
645s > g5 <- s1d.distri(w, distri, p1d.reverse = TRUE)
645s > g6 <- s1d.distri(w, distri, p1d.hori = FALSE)
645s > g7 <- s1d.distri(w, distri, p1d.hori = FALSE, p1d.reverse = TRUE)
645s > 
645s > update(g2, p1d.rug.draw = FALSE)
645s > update(g5, p1d.rug.draw = FALSE)
645s > 
645s 
645s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"
645s Copyright (C) 2025 The R Foundation for Statistical Computing
645s Platform: aarch64-unknown-linux-gnu
645s 
645s R is free software and comes with ABSOLUTELY NO WARRANTY.
645s You are welcome to redistribute it under certain conditions.
645s Type 'license()' or 'licence()' for distribution details.
645s 
645s R is a collaborative project with many contributors.
645s Type 'contributors()' for more information and
645s 'citation()' on how to cite R or R packages in publications.
645s 
645s Type 'demo()' for some demos, 'help()' for on-line help, or
645s 'help.start()' for an HTML browser interface to help.
645s Type 'q()' to quit R.
645s 
645s > library(adegraphics)
646s Registered S3 methods overwritten by 'adegraphics':
646s   method         from
646s   biplot.dudi    ade4
646s   kplot.foucart  ade4
646s   kplot.mcoa     ade4
646s   kplot.mfa      ade4
646s   kplot.pta      ade4
646s   kplot.sepan    ade4
646s   kplot.statis   ade4
646s   scatter.coa    ade4
646s   scatter.dudi   ade4
646s   scatter.nipals ade4
646s   scatter.pco    ade4
646s   score.acm      ade4
646s   score.mix      ade4
646s   score.pca      ade4
646s   screeplot.dudi ade4
646s > pdf("s1d.gauss.pdf")
646s > 
646s > data(meau, package= "ade4")
646s > envpca <- ade4::dudi.pca(meau$env, scannf = FALSE)
646s > dffac <- cbind.data.frame(meau$design$season, meau$design$site)
646s > g11 <- s1d.gauss(envpca$li[, 1], dffac[, 1])
646s > g12 <- s1d.gauss(envpca$li[, 1], dffac[, 1], p1d.rev = TRUE)
646s > g13 <- s1d.gauss(envpca$li[, 1], dffac[, 1], p1d.hori = FALSE)
646s > g14 <- s1d.gauss(envpca$li[, 1], dffac[, 1], p1d.hori = FALSE, p1d.rev = TRUE)
646s > 
646s > g2 <- s1d.gauss(envpca$li[, 1], dffac[, 1], ppoly.col = 1:4, fill = TRUE, plines.col = 1:4, col = FALSE)
646s > 
646s > g31 <- s1d.gauss(envpca$li[, 1], dffac[, 2], ppoly.col = 1:4, paxes.draw = TRUE, ylim = c(0, 2), fill = TRUE, p1d.hori = FALSE)
646s > g32 <- s1d.gauss(envpca$li[, 1], dffac[, 2], ppoly.col = 1:4, paxes.draw = TRUE, fill = TRUE, p1d.hori = FALSE)
646s > 
646s > g4 <- s1d.gauss(envpca$li[, 1], fac = dffac, fill = TRUE, col = 1:5)
646s > g5 <- s1d.gauss(envpca$li[, 1], fac = dffac, fill = TRUE, col = FALSE, ppoly.col = 1:6)
647s > g6 <- s1d.gauss(envpca$li[, 1], fac = dffac[, 1], fill = TRUE, col = 1:6, ppoly.col = 1:6)
647s > 
647s > g7 <- s1d.gauss(envpca$li[, 1], fac = dffac, fill = TRUE, col = 1:6, ppoly.col = 1:6, steps = 10)
647s > g8 <- s1d.gauss(envpca$li[, 1], dffac[, 2])
647s > 
647s > update(g11, p1d.reverse = TRUE)
647s > update(g12, p1d.reverse = FALSE)
647s > update(g13, p1d.reverse = TRUE)
647s > update(g14, p1d.reverse = FALSE)
647s > 
647s 
647s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"
647s Copyright (C) 2025 The R Foundation for Statistical Computing
647s Platform: aarch64-unknown-linux-gnu
647s 
647s R is free software and comes with ABSOLUTELY NO WARRANTY.
647s You are welcome to redistribute it under certain conditions.
647s Type 'license()' or 'licence()' for distribution details.
647s 
647s R is a collaborative project with many contributors.
647s Type 'contributors()' for more information and
647s 'citation()' on how to cite R or R packages in publications.
647s 
647s Type 'demo()' for some demos, 'help()' for on-line help, or
647s 'help.start()' for an HTML browser interface to help.
647s Type 'q()' to quit R.
647s 
647s > library(ade4)
647s > library(adegraphics)
647s Registered S3 methods overwritten by 'adegraphics':
647s   method         from
647s   biplot.dudi    ade4
647s   kplot.foucart  ade4
647s   kplot.mcoa     ade4
647s   kplot.mfa      ade4
647s   kplot.pta      ade4
647s   kplot.sepan    ade4
647s   kplot.statis   ade4
647s   scatter.coa    ade4
647s   scatter.dudi   ade4
647s   scatter.nipals ade4
647s   scatter.pco    ade4
647s   score.acm      ade4
647s   score.mix      ade4
647s   score.pca      ade4
647s   screeplot.dudi ade4
648s 
648s Attaching package: 'adegraphics'
648s 
648s > pdf("s1d.hist.pdf")
648s The following objects are masked from 'package:ade4':
648s 
648s     kplotsepan.coa, s.arrow, s.class, s.corcircle, s.distri, s.image,
648s     s.label, s.logo, s.match, s.traject, s.value, table.value,
648s     triangle.class
648s 
648s > 
648s > set.seed(40)
648s > x1 <- rnorm(1000)
648s > g11 <- s1d.hist(x1)
648s > g12 <- s1d.hist(x1, col = 1:10)
648s > g13 <- s1d.hist(x1, col = FALSE, ppoly.col = 1:10)
648s > g14 <- s1d.hist(x1, col = TRUE, ppoly.col = "blue")
648s > 
648s > set.seed(50)
648s > x1 <- rnorm(1000)
648s > g21 <- s1d.hist(x1) # p1d.hori = TRUE and p1d.reverse = FALSE by default
648s > # g22 <- s1d.hist(x1, p1d.hori = TRUE,  p1d.rev = TRUE)
648s > g23 <- s1d.hist(x1, p1d.hori = FALSE, p1d.rev = FALSE)
648s > # g24 <- s1d.hist(x1, p1d.hori = FALSE, p1d.rev = TRUE)
648s > 
648s > 
648s > # randtest.pcaiv
648s > data(rpjdl, package = "ade4")
648s > millog <- log(rpjdl$mil + 1)
648s > coa1 <- dudi.coa(rpjdl$fau, scann = FALSE)
648s > caiv1 <- pcaiv(coa1, millog, scan = FALSE)
648s > set.seed(50)
648s > rd11 <- randtest(caiv1)
648s > plot(rd11)
648s > set.seed(50)
648s > rd12 <- randtest(caiv1, output = "full")
648s > plot(rd12, nclass = 15) # must be the same output as rd11
648s > set.seed(50)
648s > rd13 <- randtest(caiv1, output = "full")
648s > plot(rd13, nclass = 8)
649s > plot(rd13, nclass = 8, plines.col = "red")
649s > plot(rd13, nclass = 8, obs.plines.col = "red")
649s > plot(rd13, nclass = 8, sim.plines.col = "red")
649s > 
649s > # randtest.dpcoa
649s > data(humDNAm, package = "ade4")
649s > dpcoahum <- dpcoa(data.frame(t(humDNAm$samples)), sqrt(humDNAm$distances), scan = FALSE, nf = 2)
649s > set.seed(50)
649s > rd21 <- randtest(dpcoahum)
649s > plot(rd21)
649s > rd22 <- randtest(dpcoahum, output = "full")
649s > plot(rd22)
650s > 
650s > # randtest.amova (plot.krandtest)
650s > amovahum <- amova(humDNAm$samples, sqrt(humDNAm$distances), humDNAm$structures)
650s > set.seed(50)
650s > rd31 <- randtest(amovahum, 49)
650s > plot(rd31)
650s > plot(rd31, plines.col = "red")
650s > plot(rd31, g1.plines.col = "red")
650s > set.seed(50)
650s > rd32 <- randtest(amovahum, 49, output = "full")
650s > plot(rd32)
651s > plot(rd32, plines.col = "red")
651s > plot(rd32, g1.plines.col = "red")
651s > plot(rd32, nclass = 30, g2.pback.col = "lightblue")
651s > 
651s > # randtest.coinertia
651s > data(doubs, package = "ade4")
651s > dudi1 <- dudi.pca(doubs$env, scale = TRUE, scan = FALSE, nf = 3)
651s > dudi2 <- dudi.pca(doubs$fish, scale = FALSE, scan = FALSE, nf = 2)
651s > coin1 <- coinertia(dudi1,dudi2, scan = FALSE, nf = 2)
651s > set.seed(50)
651s > rd4 <- randtest(coin1)
651s > plot(rd4)
651s > 
651s > # randtest.pcaivortho
651s > data(rpjdl, package = "ade4")
651s > millog <- log(rpjdl$mil + 1)
651s > coa1 <- dudi.coa(rpjdl$fau, scann = FALSE)
651s > caiv1 <- pcaiv(coa1, millog, scan = FALSE)
652s > set.seed(50)
652s > rd5 <- randtest(caiv1)
652s > plot(rd5)
652s > 
652s > # randtest.rlq (plot.krandtest)
652s > data(aviurba, package = "ade4")
652s > coa1 <- dudi.coa(aviurba$fau, scannf = FALSE, nf = 2)
652s > dudimil <- dudi.hillsmith(aviurba$mil, scannf = FALSE, nf = 2, row.w = coa1$lw)
652s > duditrait <- dudi.hillsmith(aviurba$traits, scannf = FALSE, nf = 2, row.w = coa1$cw)
652s > rlq1 <- rlq(dudimil, coa1, duditrait, scannf = FALSE, nf = 2)
652s > set.seed(50)
652s > rd6 <- randtest(rlq1)
652s > plot(rd6)
652s > 
652s > # randtest.between
652s > data(meaudret, package = "ade4")
652s > pca1 <- dudi.pca(meaudret$env, scan = FALSE, nf = 3)
652s > set.seed(50)
652s > rd7 <- randtest(bca(pca1, meaudret$design$season, scan = FALSE), 99)
652s > plot(rd7, main = "Monte-Carlo test")
652s > 
652s > # randtest.discrimin
652s > set.seed(50)
652s > rd8 <- randtest(discrimin(pca1, meaudret$design$season, scan = FALSE), 99)
652s > plot(rd8, main = "Monte-Carlo test")
652s > 
652s 
652s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"
652s Copyright (C) 2025 The R Foundation for Statistical Computing
652s Platform: aarch64-unknown-linux-gnu
652s 
652s R is free software and comes with ABSOLUTELY NO WARRANTY.
652s You are welcome to redistribute it under certain conditions.
652s Type 'license()' or 'licence()' for distribution details.
652s 
652s R is a collaborative project with many contributors.
652s Type 'contributors()' for more information and
652s 'citation()' on how to cite R or R packages in publications.
652s 
652s Type 'demo()' for some demos, 'help()' for on-line help, or
652s 'help.start()' for an HTML browser interface to help.
652s Type 'q()' to quit R.
652s 
653s > library(adegraphics)
653s Registered S3 methods overwritten by 'adegraphics':
653s   method         from
653s   biplot.dudi    ade4
653s   kplot.foucart  ade4
653s   kplot.mcoa     ade4
653s   kplot.mfa      ade4
653s   kplot.pta      ade4
653s   kplot.sepan    ade4
653s   kplot.statis   ade4
653s   scatter.coa    ade4
653s   scatter.dudi   ade4
653s   scatter.nipals ade4
653s   scatter.pco    ade4
653s   score.acm      ade4
653s   score.mix      ade4
653s   score.pca      ade4
653s   screeplot.dudi ade4
653s > pdf("s1d.label.pdf")
653s > data(meau, package= "ade4")
653s > 
653s > envpca <- ade4::dudi.pca(meau$env, scannf = FALSE)
653s > 
653s > g1 <- s1d.label(envpca$l1[, 1], row.names(envpca$l1))
653s > g2 <- s1d.label(envpca$l1[, 1], row.names(envpca$l1), p1d.hori = F)
653s > g3 <- s1d.label(envpca$l1[, 1], row.names(envpca$l1), plabels.boxes.draw = FALSE, plab.srt = 45, plabel.boxes =  list(draw = FALSE))
653s > g4 <- s1d.label(envpca$co[, 1], row.names(envpca$co), p1d.reverse = TRUE, poslabel = "value")
653s > g5 <- s1d.label(envpca$l1[, 1], row.names(envpca$l1), at = 0, plabel.cex = 0)
653s > 
653s 
653s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"
653s Copyright (C) 2025 The R Foundation for Statistical Computing
653s Platform: aarch64-unknown-linux-gnu
653s 
653s R is free software and comes with ABSOLUTELY NO WARRANTY.
653s You are welcome to redistribute it under certain conditions.
653s Type 'license()' or 'licence()' for distribution details.
653s 
653s R is a collaborative project with many contributors.
653s Type 'contributors()' for more information and
653s 'citation()' on how to cite R or R packages in publications.
653s 
653s Type 'demo()' for some demos, 'help()' for on-line help, or
653s 'help.start()' for an HTML browser interface to help.
653s Type 'q()' to quit R.
653s 
654s > library(adegraphics)
654s Registered S3 methods overwritten by 'adegraphics':
654s   method         from
654s   biplot.dudi    ade4
654s   kplot.foucart  ade4
654s   kplot.mcoa     ade4
654s   kplot.mfa      ade4
654s   kplot.pta      ade4
654s   kplot.sepan    ade4
654s   kplot.statis   ade4
654s   scatter.coa    ade4
654s   scatter.dudi   ade4
654s   scatter.nipals ade4
654s   scatter.pco    ade4
654s   score.acm      ade4
654s   score.mix      ade4
654s   score.pca      ade4
654s   screeplot.dudi ade4
654s > pdf("s1d.match.pdf")
654s > 
654s > g1 <- s1d.match(-5:5, 2 * (-5:5))
654s > g2 <- s1d.match(rnorm(10), runif(10), p1d.hor = FALSE)
654s > g3 <- s1d.match(1:5, 7:11, p1d.hor = F, p1d.rev = T)
654s > 
654s 
654s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"
654s Copyright (C) 2025 The R Foundation for Statistical Computing
654s Platform: aarch64-unknown-linux-gnu
654s 
654s R is free software and comes with ABSOLUTELY NO WARRANTY.
654s You are welcome to redistribute it under certain conditions.
654s Type 'license()' or 'licence()' for distribution details.
654s 
654s R is a collaborative project with many contributors.
654s Type 'contributors()' for more information and
654s 'citation()' on how to cite R or R packages in publications.
654s 
654s Type 'demo()' for some demos, 'help()' for on-line help, or
654s 'help.start()' for an HTML browser interface to help.
654s Type 'q()' to quit R.
654s 
655s > library(adegraphics)
655s Registered S3 methods overwritten by 'adegraphics':
655s   method         from
655s   biplot.dudi    ade4
655s   kplot.foucart  ade4
655s   kplot.mcoa     ade4
655s   kplot.mfa      ade4
655s   kplot.pta      ade4
655s   kplot.sepan    ade4
655s   kplot.statis   ade4
655s   scatter.coa    ade4
655s   scatter.dudi   ade4
655s   scatter.nipals ade4
655s   scatter.pco    ade4
655s   score.acm      ade4
655s   score.mix      ade4
655s   score.pca      ade4
655s   screeplot.dudi ade4
655s > pdf("table.image.pdf")
655s > 
655s > ## ex1
655s > x <- 1:4
655s > y <- 1:4
655s > df <- data.frame(as.matrix(cbind(x, y)))
655s > g1 <- table.image(df, col = 2:4)
655s > update(g1, plegend.drawColorKey = TRUE)
655s > 
655s > ## ex2
655s > df <- matrix(0, 10, 10)
655s > df[1:3, 1:3] <- 5        
655s > g2 <- table.image(df)
655s > g3 <- table.image(df, breaks = c(5, 2, 0))
655s > 
655s > ## ex3
655s > data(rpjdl, package = "ade4")
655s > X <- data.frame(t(rpjdl$fau))
655s > Y <- data.frame(t(rpjdl$mil))
655s > coa1 <- ade4::dudi.coa(X, scan = FALSE)
655s > x <- rank(coa1$co[, 1])
655s > y <- rank(coa1$li[, 1])
655s > g4 <- table.image(Y, coordsx = x, coordsy = 1:8, axis.text = list(alpha = 0), pgrid.col = "black", pgrid.lwd = 0.8, col = c("white", "black"), plegend.drawKey = FALSE)
655s > g5 <- table.image(X, coordsx = x, coordsy = y, ptable = list(x = list(tck = 0), y = list(tck = 4)), pleg.drawKey = FALSE, labelsy = paste(" ", row.names(X), sep = ""))
655s > g6 <- ADEgS(list(g4, g5), positions = rbind(c(0, 0, 1, 0.3), c(0, 0.4, 1, 1)))
655s > 
656s 
656s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"
656s Copyright (C) 2025 The R Foundation for Statistical Computing
656s Platform: aarch64-unknown-linux-gnu
656s 
656s R is free software and comes with ABSOLUTELY NO WARRANTY.
656s You are welcome to redistribute it under certain conditions.
656s Type 'license()' or 'licence()' for distribution details.
656s 
656s R is a collaborative project with many contributors.
656s Type 'contributors()' for more information and
656s 'citation()' on how to cite R or R packages in publications.
656s 
656s Type 'demo()' for some demos, 'help()' for on-line help, or
656s 'help.start()' for an HTML browser interface to help.
656s Type 'q()' to quit R.
656s 
656s > library(adegraphics)
656s Registered S3 methods overwritten by 'adegraphics':
656s   method         from
656s   biplot.dudi    ade4
656s   kplot.foucart  ade4
656s   kplot.mcoa     ade4
656s   kplot.mfa      ade4
656s   kplot.pta      ade4
656s   kplot.sepan    ade4
656s   kplot.statis   ade4
656s   scatter.coa    ade4
656s   scatter.dudi   ade4
656s   scatter.nipals ade4
656s   scatter.pco    ade4
656s   score.acm      ade4
656s   score.mix      ade4
656s   score.pca      ade4
656s   screeplot.dudi ade4
656s > pdf("table.value.pdf")
656s > 
656s > 
656s > ## ex1
656s > data(olympic, package = "ade4")
656s > tab1 <- data.frame(scale(olympic$tab))
656s > pca <- ade4::dudi.pca(tab1, scann = FALSE)
656s > g1 <- table.value(tab1, axis.line = list(col = "blue"), axis.text = list(col = "grey"))
656s > g2 <- table.value(tab1, coordsx = c(1:5, 10:6))
656s > g3 <- table.value(tab1, coordsx = c(1:5, 10:8))
656s > g4 <- table.value(tab1, coordsy = rank(pca$li[, 1]), coordsx = rank(pca$co[, 1]), method = "color")
656s > g5 <- table.value(tab1, coordsy = pca$li[, 1], coordsx = pca$co[, 1], ptable = list(x = list(srt = 90)))
657s > 
657s > ## ex2
657s > data(eurodist)
657s > g61 <- table.value(eurodist)
657s > g62 <- table.value(eurodist, store = TRUE, symbol = "circle")
657s > g63 <- table.value(eurodist, store = FALSE, psub.text = "eurodist", psub.position = c(0, -0.04))
657s > g64 <- table.value(eurodist, ptable.margin = list(b = 17, t = 17, l = 17, r = 17))
657s > g65 <- table.value(eurodist, ptable.x = list(pos = "bottom"),
657s +                   ptable.margin = list(b = 17, t = 17, l = 17, r = 17))
657s > 
657s > ## ex3
657s > data("doubs", package = "ade4")
657s > tab2 <- as.table(as.matrix(doubs$fish))
657s > g8 <- table.value(tab2)
657s > 
657s > ## ex4
657s > data(chats, package = "ade4")
657s > tab3 <- as.table(as.matrix(data.frame(t(chats))))
657s > coa1 <- ade4::dudi.coa(data.frame(t(chats)), scann = FALSE)
657s > adegparold <- adegpar()
657s > adegpar(ptable = list(x = list(pos = "bottom", srt = 0), y = list(pos = "left")), plegend.drawKey = FALSE)
657s > g9 <- table.value(tab3, meanX = TRUE, ablineX = TRUE)
657s > g10 <- table.value(tab3, meanY = TRUE, ablineY = TRUE) 
657s > g11 <- table.value(tab3, coordsx = coa1$c1[, 1], coordsy = coa1$l1[, 1], meanX = TRUE, ablineX = TRUE)
657s > g12 <- table.value(tab3, coordsx = coa1$c1[, 1], coordsy = coa1$l1[, 1], meanY = TRUE, ablineY = TRUE)
657s > g13 <- ADEgS(list(g9, g10, g11, g12), pos = rbind(c(0, 0.5, 0.5, 1), c(0.5, 0.5, 1, 1), c(0, 0, 0.5, 0.5), c(0.5, 0, 1, 0.5)))
657s > adegpar(adegparold)
657s > 
657s > ## ex5
657s > data(rpjdl, package = "ade4")
657s > tab4 <- data.frame(t(rpjdl$fau))
657s > coa2 <- ade4::dudi.coa(tab4, scann = FALSE)
657s > g14 <- table.value(tab4, coordsx = coa2$c1[, 1], coordsy = rank(coa2$l1[, 1]), axis.text = list(cex = 0), labelsy = rpjdl$lalab, plot = F)
657s > 
657s > ## ex6
657s > tab5 <- as.table(matrix(rep(0, 100), 10))
657s > tab5[1:5, 1:5] <- 10
657s > ade4::table.cont(tab5, abmean.x = T, y = 10:1)
657s > g15 <- table.value(tab5, coordsy = 10:1, meanX = T)
657s > g16 <- table.value(tab5, coordsy = 10:1, meanX = T, meanY = TRUE, ablineX = TRUE, ablineY = TRUE)
657s > 
657s > ## ex7
657s > tab6 <- matrix(rep(0, 100), 10)
657s > tab6[1:5, 1:5] <- 20
657s > colnames(tab6) <- LETTERS[1:10]
657s > rownames(tab6) <- LETTERS[1:10]
657s > ade4::table.value(tab6, x = 1:10, y = 10:1)
657s > g17 <- table.value(tab6, coordsx = 1:10, coordsy = 10:1)
657s > g18 <- table.value(tab6, coordsx = 1:10, coordsy = c(1, 2, 5, 6, 8, 9, 10, 3, 4, 7))
657s > 
657s > 
657s > ## ex8
657s > d <- as.dist(matrix(rep(1:5, 5), 5), upper = TRUE)
657s > attr(d, "Labels") <- c ("A", "B", "C", "D", "E")
657s > g4 <- table.value(d)
657s > 
657s > ## ex9
657s > data(irishdata, package = "ade4")
657s > d.geo <- dist(irishdata$xy.utm)
657s > g5 <- table.value(d.geo)
657s > 
658s 
658s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"
658s Copyright (C) 2025 The R Foundation for Statistical Computing
658s Platform: aarch64-unknown-linux-gnu
658s 
658s R is free software and comes with ABSOLUTELY NO WARRANTY.
658s You are welcome to redistribute it under certain conditions.
658s Type 'license()' or 'licence()' for distribution details.
658s 
658s R is a collaborative project with many contributors.
658s Type 'contributors()' for more information and
658s 'citation()' on how to cite R or R packages in publications.
658s 
658s Type 'demo()' for some demos, 'help()' for on-line help, or
658s 'help.start()' for an HTML browser interface to help.
658s Type 'q()' to quit R.
658s 
658s > library(adegraphics)
658s Registered S3 methods overwritten by 'adegraphics':
658s   method         from
658s   biplot.dudi    ade4
658s   kplot.foucart  ade4
658s   kplot.mcoa     ade4
658s   kplot.mfa      ade4
658s   kplot.pta      ade4
658s   kplot.sepan    ade4
658s   kplot.statis   ade4
658s   scatter.coa    ade4
658s   scatter.dudi   ade4
658s   scatter.nipals ade4
658s   scatter.pco    ade4
658s   score.acm      ade4
658s   score.mix      ade4
658s   score.pca      ade4
658s   screeplot.dudi ade4
658s > pdf("triangle.pdf")
658s > 
658s > ## ex1
658s > data(euro123, package = "ade4")
658s > 
658s > dfxyz1 <- rbind.data.frame(euro123$in78, euro123$in86, euro123$in97)
658s > row.names(dfxyz1) <- paste(row.names(euro123$in78), rep(c(1, 2, 3), rep(12, 3)), sep = "")
658s > g1 <- triangle.label(dfxyz1, label = row.names(dfxyz1))
658s > g2 <- triangle.label(euro123$in86, label = row.names(euro123$in78), plab.cex = 0.8)
659s > g3 <- triangle.match(euro123$in78, euro123$in86)
659s > g4 <- triangle.label(rbind.data.frame(euro123$in78, euro123$in86), plab.cex = 1, addaxes = TRUE, psub = list(text = "Principal axis", cex = 2, pos = "topright"))
659s > g5 <- triangle.label(euro123[[1]], min3 = c(0, 0.2, 0.3), max3 = c(0.5, 0.7, 0.8), plabels.cex = 1, label = row.names(euro123[[1]]), addax = TRUE)
659s > g6 <- triangle.label(euro123[[2]], min3 = c(0, 0.2, 0.3), max3 = c(0.5, 0.7, 0.8), label = row.names(euro123[[1]]), addax = TRUE)
659s > g7 <- triangle.label(euro123[[3]], min3 = c(0, 0.2, 0.3), max3 = c(0.5, 0.7, 0.8), label = row.names(euro123[[1]]), addax = TRUE)
659s > g8 <- triangle.label(rbind.data.frame(euro123[[1]], euro123[[2]], euro123[[3]]))
659s > 
659s > ## ex2
659s > dfxyz2 <- cbind.data.frame(a = runif(100), b = runif(100), c = runif(100, 4, 5))
659s > g9 <- triangle.label(dfxyz2)
659s > 
659s > ## ex3
659s > g10 <- triangle.label(dfxyz1)
659s > g11 <- triangle.class(dfxyz1, as.factor(rep("G", 36)), star = 0.5, ellips = 1)
659s > g12 <- triangle.class(dfxyz1, euro123$plan$an)
660s > g13 <- triangle.class(dfxyz1, euro123$plan$pays)
660s > g14 <- triangle.class(dfxyz1, euro123$plan$an, elli = 1, pell.axe.draw = TRUE)
660s > g15 <- triangle.class(dfxyz1, euro123$plan$an, elli = 0, sta = 0, col = c("red", "green", "blue"), pell.axe.draw = TRUE, plab.cex = 2, ppoi.cex = 2, pell.axe.draw = TRUE)
660s > g16 <- triangle.class(dfxyz1, euro123$plan$an, ell = 2, sta = 0.5, pell.axe.draw = TRUE, plab.cex = 1.5)
660s > g17 <- triangle.class(dfxyz1, euro123$plan$an, ell = 0, sta = 1, adjust = FALSE) 
660s > g18 <- triangle.class(dfxyz1, euro123$plan$an, ell = 0, sta = 1, chull =c(0.2, 0.25, 0.5, 0.75, 1), adjust = TRUE, showposi = TRUE, col = 10:13, pgrid.draw = FALSE)
660s > 
660s autopkgtest [22:58:22]: test run-unit-test: -----------------------]
661s autopkgtest [22:58:23]: test run-unit-test:  - - - - - - - - - - results - - - - - - - - - -
661s run-unit-test        PASS
661s autopkgtest [22:58:23]: test pkg-r-autopkgtest: preparing testbed
661s Reading package lists...
662s Building dependency tree...
662s Reading state information...
662s Solving dependencies...
662s The following NEW packages will be installed:
662s   build-essential cpp cpp-15 cpp-15-aarch64-linux-gnu cpp-aarch64-linux-gnu
662s   dctrl-tools g++ g++-15 g++-15-aarch64-linux-gnu g++-aarch64-linux-gnu gcc
662s   gcc-15 gcc-15-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-15
662s   gfortran-15-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools
662s   libasan8 libblas-dev libbz2-dev libc-dev-bin libc6-dev libcc1-0 libcrypt-dev
662s   libdeflate-dev libgcc-15-dev libgfortran-15-dev libhwasan0 libicu-dev
662s   libisl23 libitm1 libjpeg-dev libjpeg-turbo8-dev libjpeg8-dev liblapack-dev
662s   liblsan0 liblzma-dev libmpc3 libncurses-dev libpcre2-16-0 libpcre2-32-0
662s   libpcre2-dev libpcre2-posix3 libpkgconf3 libpng-dev libreadline-dev
662s   libstdc++-15-dev libtirpc-dev libtsan2 libubsan1 libzstd-dev linux-libc-dev
662s   pkg-r-autopkgtest pkgconf pkgconf-bin r-base-dev rpcsvc-proto zlib1g-dev
662s 0 upgraded, 60 newly installed, 0 to remove and 0 not upgraded.
662s Need to get 103 MB of archives.
662s After this operation, 377 MB of additional disk space will be used.
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824s Get:53 http://ftpmaster.internal/ubuntu resolute/main arm64 libreadline-dev arm64 8.3-3 [199 kB]
824s Get:54 http://ftpmaster.internal/ubuntu resolute/main arm64 libzstd-dev arm64 1.5.7+dfsg-3 [349 kB]
824s Get:55 http://ftpmaster.internal/ubuntu resolute/main arm64 liblzma-dev arm64 5.8.2-2 [180 kB]
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824s Get:58 http://ftpmaster.internal/ubuntu resolute/main arm64 libtirpc-dev arm64 1.3.6+ds-1 [202 kB]
824s Get:59 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-base-dev all 4.5.2-1ubuntu2 [1880 B]
824s Get:60 http://ftpmaster.internal/ubuntu resolute/universe arm64 pkg-r-autopkgtest all 20250812 [6158 B]
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825s Selecting previously unselected package libmpc3:arm64.
825s Preparing to unpack .../06-libmpc3_1.3.1-2_arm64.deb ...
825s Unpacking libmpc3:arm64 (1.3.1-2) ...
825s Selecting previously unselected package cpp-15-aarch64-linux-gnu.
825s Preparing to unpack .../07-cpp-15-aarch64-linux-gnu_15.2.0-12ubuntu1_arm64.deb ...
825s Unpacking cpp-15-aarch64-linux-gnu (15.2.0-12ubuntu1) ...
826s Selecting previously unselected package cpp-15.
826s Preparing to unpack .../08-cpp-15_15.2.0-12ubuntu1_arm64.deb ...
826s Unpacking cpp-15 (15.2.0-12ubuntu1) ...
826s Selecting previously unselected package cpp-aarch64-linux-gnu.
826s Preparing to unpack .../09-cpp-aarch64-linux-gnu_4%3a15.2.0-4ubuntu1_arm64.deb ...
826s Unpacking cpp-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ...
826s Selecting previously unselected package cpp.
826s Preparing to unpack .../10-cpp_4%3a15.2.0-4ubuntu1_arm64.deb ...
826s Unpacking cpp (4:15.2.0-4ubuntu1) ...
826s Selecting previously unselected package libcc1-0:arm64.
826s Preparing to unpack .../11-libcc1-0_15.2.0-12ubuntu1_arm64.deb ...
826s Unpacking libcc1-0:arm64 (15.2.0-12ubuntu1) ...
826s Selecting previously unselected package libitm1:arm64.
826s Preparing to unpack .../12-libitm1_15.2.0-12ubuntu1_arm64.deb ...
826s Unpacking libitm1:arm64 (15.2.0-12ubuntu1) ...
826s Selecting previously unselected package libasan8:arm64.
826s Preparing to unpack .../13-libasan8_15.2.0-12ubuntu1_arm64.deb ...
826s Unpacking libasan8:arm64 (15.2.0-12ubuntu1) ...
826s Selecting previously unselected package liblsan0:arm64.
826s Preparing to unpack .../14-liblsan0_15.2.0-12ubuntu1_arm64.deb ...
826s Unpacking liblsan0:arm64 (15.2.0-12ubuntu1) ...
826s Selecting previously unselected package libtsan2:arm64.
826s Preparing to unpack .../15-libtsan2_15.2.0-12ubuntu1_arm64.deb ...
826s Unpacking libtsan2:arm64 (15.2.0-12ubuntu1) ...
826s Selecting previously unselected package libubsan1:arm64.
826s Preparing to unpack .../16-libubsan1_15.2.0-12ubuntu1_arm64.deb ...
826s Unpacking libubsan1:arm64 (15.2.0-12ubuntu1) ...
826s Selecting previously unselected package libhwasan0:arm64.
826s Preparing to unpack .../17-libhwasan0_15.2.0-12ubuntu1_arm64.deb ...
826s Unpacking libhwasan0:arm64 (15.2.0-12ubuntu1) ...
826s Selecting previously unselected package libgcc-15-dev:arm64.
826s Preparing to unpack .../18-libgcc-15-dev_15.2.0-12ubuntu1_arm64.deb ...
826s Unpacking libgcc-15-dev:arm64 (15.2.0-12ubuntu1) ...
826s Selecting previously unselected package gcc-15-aarch64-linux-gnu.
826s Preparing to unpack .../19-gcc-15-aarch64-linux-gnu_15.2.0-12ubuntu1_arm64.deb ...
826s Unpacking gcc-15-aarch64-linux-gnu (15.2.0-12ubuntu1) ...
827s Selecting previously unselected package gcc-15.
827s Preparing to unpack .../20-gcc-15_15.2.0-12ubuntu1_arm64.deb ...
827s Unpacking gcc-15 (15.2.0-12ubuntu1) ...
827s Selecting previously unselected package gcc-aarch64-linux-gnu.
827s Preparing to unpack .../21-gcc-aarch64-linux-gnu_4%3a15.2.0-4ubuntu1_arm64.deb ...
827s Unpacking gcc-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ...
827s Selecting previously unselected package gcc.
827s Preparing to unpack .../22-gcc_4%3a15.2.0-4ubuntu1_arm64.deb ...
827s Unpacking gcc (4:15.2.0-4ubuntu1) ...
827s Selecting previously unselected package libstdc++-15-dev:arm64.
827s Preparing to unpack .../23-libstdc++-15-dev_15.2.0-12ubuntu1_arm64.deb ...
827s Unpacking libstdc++-15-dev:arm64 (15.2.0-12ubuntu1) ...
827s Selecting previously unselected package g++-15-aarch64-linux-gnu.
827s Preparing to unpack .../24-g++-15-aarch64-linux-gnu_15.2.0-12ubuntu1_arm64.deb ...
827s Unpacking g++-15-aarch64-linux-gnu (15.2.0-12ubuntu1) ...
827s Selecting previously unselected package g++-15.
827s Preparing to unpack .../25-g++-15_15.2.0-12ubuntu1_arm64.deb ...
827s Unpacking g++-15 (15.2.0-12ubuntu1) ...
827s Selecting previously unselected package g++-aarch64-linux-gnu.
827s Preparing to unpack .../26-g++-aarch64-linux-gnu_4%3a15.2.0-4ubuntu1_arm64.deb ...
827s Unpacking g++-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ...
827s Selecting previously unselected package g++.
827s Preparing to unpack .../27-g++_4%3a15.2.0-4ubuntu1_arm64.deb ...
827s Unpacking g++ (4:15.2.0-4ubuntu1) ...
827s Selecting previously unselected package build-essential.
827s Preparing to unpack .../28-build-essential_12.12ubuntu2_arm64.deb ...
827s Unpacking build-essential (12.12ubuntu2) ...
827s Selecting previously unselected package dctrl-tools.
827s Preparing to unpack .../29-dctrl-tools_2.24-3build4_arm64.deb ...
827s Unpacking dctrl-tools (2.24-3build4) ...
827s Selecting previously unselected package libgfortran-15-dev:arm64.
827s Preparing to unpack .../30-libgfortran-15-dev_15.2.0-12ubuntu1_arm64.deb ...
827s Unpacking libgfortran-15-dev:arm64 (15.2.0-12ubuntu1) ...
827s Selecting previously unselected package gfortran-15-aarch64-linux-gnu.
828s Preparing to unpack .../31-gfortran-15-aarch64-linux-gnu_15.2.0-12ubuntu1_arm64.deb ...
828s Unpacking gfortran-15-aarch64-linux-gnu (15.2.0-12ubuntu1) ...
828s Selecting previously unselected package gfortran-15.
828s Preparing to unpack .../32-gfortran-15_15.2.0-12ubuntu1_arm64.deb ...
828s Unpacking gfortran-15 (15.2.0-12ubuntu1) ...
828s Selecting previously unselected package gfortran-aarch64-linux-gnu.
828s Preparing to unpack .../33-gfortran-aarch64-linux-gnu_4%3a15.2.0-4ubuntu1_arm64.deb ...
828s Unpacking gfortran-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ...
828s Selecting previously unselected package gfortran.
828s Preparing to unpack .../34-gfortran_4%3a15.2.0-4ubuntu1_arm64.deb ...
828s Unpacking gfortran (4:15.2.0-4ubuntu1) ...
828s Selecting previously unselected package icu-devtools.
828s Preparing to unpack .../35-icu-devtools_78.2-1ubuntu1_arm64.deb ...
828s Unpacking icu-devtools (78.2-1ubuntu1) ...
828s Selecting previously unselected package libblas-dev:arm64.
828s Preparing to unpack .../36-libblas-dev_3.12.1-7ubuntu1_arm64.deb ...
828s Unpacking libblas-dev:arm64 (3.12.1-7ubuntu1) ...
828s Selecting previously unselected package libbz2-dev:arm64.
828s Preparing to unpack .../37-libbz2-dev_1.0.8-6build2_arm64.deb ...
828s Unpacking libbz2-dev:arm64 (1.0.8-6build2) ...
828s Selecting previously unselected package libdeflate-dev:arm64.
828s Preparing to unpack .../38-libdeflate-dev_1.23-2build1_arm64.deb ...
828s Unpacking libdeflate-dev:arm64 (1.23-2build1) ...
828s Selecting previously unselected package libicu-dev:arm64.
828s Preparing to unpack .../39-libicu-dev_78.2-1ubuntu1_arm64.deb ...
828s Unpacking libicu-dev:arm64 (78.2-1ubuntu1) ...
828s Selecting previously unselected package libjpeg-turbo8-dev:arm64.
828s Preparing to unpack .../40-libjpeg-turbo8-dev_2.1.5-4ubuntu3_arm64.deb ...
828s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-4ubuntu3) ...
828s Selecting previously unselected package libjpeg8-dev:arm64.
828s Preparing to unpack .../41-libjpeg8-dev_8c-2ubuntu11_arm64.deb ...
828s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ...
828s Selecting previously unselected package libjpeg-dev:arm64.
828s Preparing to unpack .../42-libjpeg-dev_8c-2ubuntu11_arm64.deb ...
828s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ...
828s Selecting previously unselected package liblapack-dev:arm64.
829s Preparing to unpack .../43-liblapack-dev_3.12.1-7ubuntu1_arm64.deb ...
829s Unpacking liblapack-dev:arm64 (3.12.1-7ubuntu1) ...
829s Selecting previously unselected package libncurses-dev:arm64.
829s Preparing to unpack .../44-libncurses-dev_6.6+20251231-1_arm64.deb ...
829s Unpacking libncurses-dev:arm64 (6.6+20251231-1) ...
829s Selecting previously unselected package libpcre2-16-0:arm64.
829s Preparing to unpack .../45-libpcre2-16-0_10.46-1_arm64.deb ...
829s Unpacking libpcre2-16-0:arm64 (10.46-1) ...
829s Selecting previously unselected package libpcre2-32-0:arm64.
829s Preparing to unpack .../46-libpcre2-32-0_10.46-1_arm64.deb ...
829s Unpacking libpcre2-32-0:arm64 (10.46-1) ...
829s Selecting previously unselected package libpcre2-posix3:arm64.
829s Preparing to unpack .../47-libpcre2-posix3_10.46-1_arm64.deb ...
829s Unpacking libpcre2-posix3:arm64 (10.46-1) ...
829s Selecting previously unselected package libpcre2-dev:arm64.
829s Preparing to unpack .../48-libpcre2-dev_10.46-1_arm64.deb ...
829s Unpacking libpcre2-dev:arm64 (10.46-1) ...
829s Selecting previously unselected package libpkgconf3:arm64.
829s Preparing to unpack .../49-libpkgconf3_1.8.1-4build1_arm64.deb ...
829s Unpacking libpkgconf3:arm64 (1.8.1-4build1) ...
829s Selecting previously unselected package zlib1g-dev:arm64.
829s Preparing to unpack .../50-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu2_arm64.deb ...
829s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu2) ...
829s Selecting previously unselected package libpng-dev:arm64.
829s Preparing to unpack .../51-libpng-dev_1.6.54-1_arm64.deb ...
829s Unpacking libpng-dev:arm64 (1.6.54-1) ...
829s Selecting previously unselected package libreadline-dev:arm64.
829s Preparing to unpack .../52-libreadline-dev_8.3-3_arm64.deb ...
829s Unpacking libreadline-dev:arm64 (8.3-3) ...
829s Selecting previously unselected package libzstd-dev:arm64.
829s Preparing to unpack .../53-libzstd-dev_1.5.7+dfsg-3_arm64.deb ...
829s Unpacking libzstd-dev:arm64 (1.5.7+dfsg-3) ...
829s Selecting previously unselected package liblzma-dev:arm64.
829s Preparing to unpack .../54-liblzma-dev_5.8.2-2_arm64.deb ...
829s Unpacking liblzma-dev:arm64 (5.8.2-2) ...
829s Selecting previously unselected package pkgconf-bin.
829s Preparing to unpack .../55-pkgconf-bin_1.8.1-4build1_arm64.deb ...
829s Unpacking pkgconf-bin (1.8.1-4build1) ...
829s Selecting previously unselected package pkgconf:arm64.
829s Preparing to unpack .../56-pkgconf_1.8.1-4build1_arm64.deb ...
829s Unpacking pkgconf:arm64 (1.8.1-4build1) ...
829s Selecting previously unselected package libtirpc-dev:arm64.
829s Preparing to unpack .../57-libtirpc-dev_1.3.6+ds-1_arm64.deb ...
829s Unpacking libtirpc-dev:arm64 (1.3.6+ds-1) ...
829s Selecting previously unselected package r-base-dev.
829s Preparing to unpack .../58-r-base-dev_4.5.2-1ubuntu2_all.deb ...
829s Unpacking r-base-dev (4.5.2-1ubuntu2) ...
829s Selecting previously unselected package pkg-r-autopkgtest.
829s Preparing to unpack .../59-pkg-r-autopkgtest_20250812_all.deb ...
829s Unpacking pkg-r-autopkgtest (20250812) ...
829s Setting up libzstd-dev:arm64 (1.5.7+dfsg-3) ...
829s Setting up linux-libc-dev:arm64 (6.19.0-3.3) ...
829s Setting up libpcre2-16-0:arm64 (10.46-1) ...
829s Setting up libpcre2-32-0:arm64 (10.46-1) ...
829s Setting up libtirpc-dev:arm64 (1.3.6+ds-1) ...
829s Setting up libpkgconf3:arm64 (1.8.1-4build1) ...
829s Setting up rpcsvc-proto (1.4.3-1build1) ...
829s Setting up libmpc3:arm64 (1.3.1-2) ...
829s Setting up icu-devtools (78.2-1ubuntu1) ...
829s Setting up pkgconf-bin (1.8.1-4build1) ...
829s Setting up liblzma-dev:arm64 (5.8.2-2) ...
829s Setting up libubsan1:arm64 (15.2.0-12ubuntu1) ...
829s Setting up libpcre2-posix3:arm64 (10.46-1) ...
829s Setting up libhwasan0:arm64 (15.2.0-12ubuntu1) ...
829s Setting up libcrypt-dev:arm64 (1:4.5.1-1) ...
829s Setting up libasan8:arm64 (15.2.0-12ubuntu1) ...
829s Setting up libtsan2:arm64 (15.2.0-12ubuntu1) ...
829s Setting up libisl23:arm64 (0.27-1build1) ...
829s Setting up libc-dev-bin (2.42-2ubuntu4) ...
829s Setting up libdeflate-dev:arm64 (1.23-2build1) ...
829s Setting up libcc1-0:arm64 (15.2.0-12ubuntu1) ...
829s Setting up liblsan0:arm64 (15.2.0-12ubuntu1) ...
829s Setting up libblas-dev:arm64 (3.12.1-7ubuntu1) ...
829s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode
829s Setting up dctrl-tools (2.24-3build4) ...
829s Setting up libitm1:arm64 (15.2.0-12ubuntu1) ...
829s Setting up cpp-15-aarch64-linux-gnu (15.2.0-12ubuntu1) ...
829s Setting up libgcc-15-dev:arm64 (15.2.0-12ubuntu1) ...
829s Setting up libgfortran-15-dev:arm64 (15.2.0-12ubuntu1) ...
829s Setting up pkgconf:arm64 (1.8.1-4build1) ...
829s Setting up cpp-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ...
829s Setting up liblapack-dev:arm64 (3.12.1-7ubuntu1) ...
829s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode
829s Setting up cpp-15 (15.2.0-12ubuntu1) ...
829s Setting up cpp (4:15.2.0-4ubuntu1) ...
829s Setting up libc6-dev:arm64 (2.42-2ubuntu4) ...
829s Setting up libicu-dev:arm64 (78.2-1ubuntu1) ...
829s Setting up libbz2-dev:arm64 (1.0.8-6build2) ...
829s Setting up libjpeg-turbo8-dev:arm64 (2.1.5-4ubuntu3) ...
829s Setting up libncurses-dev:arm64 (6.6+20251231-1) ...
829s Setting up gcc-15-aarch64-linux-gnu (15.2.0-12ubuntu1) ...
830s Setting up libpcre2-dev:arm64 (10.46-1) ...
830s Setting up libreadline-dev:arm64 (8.3-3) ...
830s Setting up gcc-15 (15.2.0-12ubuntu1) ...
830s Setting up libstdc++-15-dev:arm64 (15.2.0-12ubuntu1) ...
830s Setting up gfortran-15-aarch64-linux-gnu (15.2.0-12ubuntu1) ...
830s Setting up g++-15-aarch64-linux-gnu (15.2.0-12ubuntu1) ...
830s Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu2) ...
830s Setting up libjpeg8-dev:arm64 (8c-2ubuntu11) ...
830s Setting up g++-15 (15.2.0-12ubuntu1) ...
830s Setting up gfortran-15 (15.2.0-12ubuntu1) ...
830s Setting up gcc-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ...
830s Setting up libpng-dev:arm64 (1.6.54-1) ...
830s Setting up libjpeg-dev:arm64 (8c-2ubuntu11) ...
830s Setting up gcc (4:15.2.0-4ubuntu1) ...
830s Setting up g++-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ...
830s Setting up gfortran-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ...
830s Setting up gfortran (4:15.2.0-4ubuntu1) ...
830s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
830s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
830s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
830s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
830s Setting up g++ (4:15.2.0-4ubuntu1) ...
830s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
830s Setting up build-essential (12.12ubuntu2) ...
830s Setting up r-base-dev (4.5.2-1ubuntu2) ...
830s Setting up pkg-r-autopkgtest (20250812) ...
830s Processing triggers for libc-bin (2.42-2ubuntu4) ...
830s Processing triggers for man-db (2.13.1-1build1) ...
830s Processing triggers for install-info (7.2-5) ...
831s autopkgtest [23:01:13]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
831s autopkgtest [23:01:13]: test pkg-r-autopkgtest: [-----------------------
832s Test: Try to load the R library adegraphics
832s 
832s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"
832s Copyright (C) 2025 The R Foundation for Statistical Computing
832s Platform: aarch64-unknown-linux-gnu
832s 
832s R is free software and comes with ABSOLUTELY NO WARRANTY.
832s You are welcome to redistribute it under certain conditions.
832s Type 'license()' or 'licence()' for distribution details.
832s 
832s R is a collaborative project with many contributors.
832s Type 'contributors()' for more information and
832s 'citation()' on how to cite R or R packages in publications.
832s 
832s Type 'demo()' for some demos, 'help()' for on-line help, or
832s 'help.start()' for an HTML browser interface to help.
832s Type 'q()' to quit R.
832s 
832s > library('adegraphics')
832s Registered S3 methods overwritten by 'adegraphics':
832s   method         from
832s   biplot.dudi    ade4
832s   kplot.foucart  ade4
832s   kplot.mcoa     ade4
832s   kplot.mfa      ade4
832s   kplot.pta      ade4
832s   kplot.sepan    ade4
832s   kplot.statis   ade4
832s   scatter.coa    ade4
832s   scatter.dudi   ade4
832s   scatter.nipals ade4
832s   scatter.pco    ade4
832s   score.acm      ade4
832s   score.mix      ade4
832s   score.pca      ade4
832s   screeplot.dudi ade4
832s > 
833s autopkgtest [23:01:15]: test pkg-r-autopkgtest: -----------------------]
833s autopkgtest [23:01:15]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
833s pkg-r-autopkgtest    PASS
833s autopkgtest [23:01:15]: @@@@@@@@@@@@@@@@@@@@ summary
833s run-unit-test        PASS
833s pkg-r-autopkgtest    PASS