0s autopkgtest [22:46:43]: starting date and time: 2026-02-09 22:46:43+0000 0s autopkgtest [22:46:43]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [22:46:43]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.1c3mdi2i/out --timeout-copy=6000 --needs-internet=try --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:lattice --apt-upgrade r-bioc-shortread --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=lattice/0.22-9-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-arm64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@sto01-arm64-9.secgroup --name adt-resolute-arm64-r-bioc-shortread-20260209-224642-juju-7f2275-prod-proposed-migration-environment-20-fd72b19f-083b-4f74-8e5f-e7ddc1518356 --image adt/ubuntu-resolute-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-autopkgtest-workers-arm64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 3s Creating nova instance adt-resolute-arm64-r-bioc-shortread-20260209-224642-juju-7f2275-prod-proposed-migration-environment-20-fd72b19f-083b-4f74-8e5f-e7ddc1518356 from image adt/ubuntu-resolute-arm64-server-20260209.img (UUID 793037ca-75af-461b-82de-f8081300b2e3)... 119s autopkgtest [22:48:42]: testbed dpkg architecture: arm64 119s autopkgtest [22:48:42]: testbed apt version: 3.1.15 119s autopkgtest [22:48:42]: @@@@@@@@@@@@@@@@@@@@ test bed setup 119s autopkgtest [22:48:42]: testbed release detected to be: None 120s autopkgtest [22:48:43]: updating testbed package index (apt update) 120s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 121s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 121s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 121s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 121s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [176 kB] 121s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [29.4 kB] 121s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1645 kB] 124s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 Packages [246 kB] 124s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 c-n-f Metadata [6216 B] 125s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 c-n-f Metadata [304 B] 125s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 Packages [1580 kB] 129s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 c-n-f Metadata [32.0 kB] 129s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 Packages [21.7 kB] 129s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 c-n-f Metadata [688 B] 130s Fetched 3862 kB in 9s (444 kB/s) 131s Reading package lists... 132s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 132s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 132s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 132s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 133s Reading package lists... 133s Reading package lists... 133s Building dependency tree... 133s Reading state information... 133s Calculating upgrade... 134s The following packages will be upgraded: 134s cryptsetup-bin dracut-install iproute2 iptables libcryptsetup12 libip4tc2 134s libip6tc2 libxtables12 wget 134s 9 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 134s Need to get 2534 kB of archives. 134s After this operation, 18.4 kB of additional disk space will be used. 134s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 iptables arm64 1.8.11-2ubuntu3 [386 kB] 134s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 libip4tc2 arm64 1.8.11-2ubuntu3 [24.3 kB] 134s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 libip6tc2 arm64 1.8.11-2ubuntu3 [24.7 kB] 134s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 libxtables12 arm64 1.8.11-2ubuntu3 [36.7 kB] 134s Get:5 http://ftpmaster.internal/ubuntu resolute/main arm64 iproute2 arm64 6.18.0-1ubuntu1 [1171 kB] 136s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 libcryptsetup12 arm64 2:2.8.0-1ubuntu3 [274 kB] 136s Get:7 http://ftpmaster.internal/ubuntu resolute/main arm64 wget arm64 1.25.0-2ubuntu4 [344 kB] 136s Get:8 http://ftpmaster.internal/ubuntu resolute/main arm64 cryptsetup-bin arm64 2:2.8.0-1ubuntu3 [227 kB] 136s Get:9 http://ftpmaster.internal/ubuntu resolute/main arm64 dracut-install arm64 109-11ubuntu1 [45.3 kB] 136s dpkg-preconfigure: unable to re-open stdin: No such file or directory 136s Fetched 2534 kB in 2s (1151 kB/s) 136s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 136597 files and directories currently installed.) 136s Preparing to unpack .../0-iptables_1.8.11-2ubuntu3_arm64.deb ... 136s Unpacking iptables (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 136s Preparing to unpack .../1-libip4tc2_1.8.11-2ubuntu3_arm64.deb ... 136s Unpacking libip4tc2:arm64 (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 137s Preparing to unpack .../2-libip6tc2_1.8.11-2ubuntu3_arm64.deb ... 137s Unpacking libip6tc2:arm64 (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 137s Preparing to unpack .../3-libxtables12_1.8.11-2ubuntu3_arm64.deb ... 137s Unpacking libxtables12:arm64 (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 137s Preparing to unpack .../4-iproute2_6.18.0-1ubuntu1_arm64.deb ... 137s Unpacking iproute2 (6.18.0-1ubuntu1) over (6.16.0-1ubuntu3) ... 137s Preparing to unpack .../5-libcryptsetup12_2%3a2.8.0-1ubuntu3_arm64.deb ... 137s Unpacking libcryptsetup12:arm64 (2:2.8.0-1ubuntu3) over (2:2.8.0-1ubuntu2) ... 137s Preparing to unpack .../6-wget_1.25.0-2ubuntu4_arm64.deb ... 137s Unpacking wget (1.25.0-2ubuntu4) over (1.25.0-2ubuntu3) ... 137s Preparing to unpack .../7-cryptsetup-bin_2%3a2.8.0-1ubuntu3_arm64.deb ... 137s Unpacking cryptsetup-bin (2:2.8.0-1ubuntu3) over (2:2.8.0-1ubuntu2) ... 137s Preparing to unpack .../8-dracut-install_109-11ubuntu1_arm64.deb ... 137s Unpacking dracut-install (109-11ubuntu1) over (109-9ubuntu1) ... 137s Setting up libip4tc2:arm64 (1.8.11-2ubuntu3) ... 137s Setting up wget (1.25.0-2ubuntu4) ... 137s Setting up libip6tc2:arm64 (1.8.11-2ubuntu3) ... 137s Setting up libxtables12:arm64 (1.8.11-2ubuntu3) ... 137s Setting up dracut-install (109-11ubuntu1) ... 137s Setting up libcryptsetup12:arm64 (2:2.8.0-1ubuntu3) ... 137s Setting up cryptsetup-bin (2:2.8.0-1ubuntu3) ... 137s Setting up iptables (1.8.11-2ubuntu3) ... 138s Setting up iproute2 (6.18.0-1ubuntu1) ... 138s Processing triggers for man-db (2.13.1-1build1) ... 139s Processing triggers for install-info (7.2-5) ... 139s Processing triggers for libc-bin (2.42-2ubuntu4) ... 139s autopkgtest [22:49:02]: upgrading testbed (apt dist-upgrade and autopurge) 139s Reading package lists... 139s Building dependency tree... 139s Reading state information... 140s Calculating upgrade... 140s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 140s Reading package lists... 140s Building dependency tree... 140s Reading state information... 140s Solving dependencies... 141s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 143s autopkgtest [22:49:06]: testbed running kernel: Linux 6.19.0-3-generic #3-Ubuntu SMP PREEMPT_DYNAMIC Fri Jan 23 19:46:27 UTC 2026 143s autopkgtest [22:49:06]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-shortread 154s Get:1 http://ftpmaster.internal/ubuntu resolute/universe r-bioc-shortread 1.64.0-3 (dsc) [2409 B] 154s Get:2 http://ftpmaster.internal/ubuntu resolute/universe r-bioc-shortread 1.64.0-3 (tar) [5321 kB] 154s Get:3 http://ftpmaster.internal/ubuntu resolute/universe r-bioc-shortread 1.64.0-3 (diff) [6160 B] 154s gpgv: Signature made Mon Jan 27 12:34:30 2025 UTC 154s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 154s gpgv: issuer "crusoe@debian.org" 154s gpgv: Can't check signature: No public key 154s dpkg-source: warning: cannot verify inline signature for ./r-bioc-shortread_1.64.0-3.dsc: no acceptable signature found 154s autopkgtest [22:49:17]: testing package r-bioc-shortread version 1.64.0-3 155s autopkgtest [22:49:18]: build not needed 158s autopkgtest [22:49:21]: test pkg-r-autopkgtest: preparing testbed 158s Reading package lists... 159s Building dependency tree... 159s Reading state information... 159s Solving dependencies... 159s The following NEW packages will be installed: 159s build-essential cpp cpp-15 cpp-15-aarch64-linux-gnu cpp-aarch64-linux-gnu 159s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 159s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 159s g++ g++-15 g++-15-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-15 159s gcc-15-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-15 159s gfortran-15-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 159s javascript-common libasan8 libbibtex-parser-perl libblas-dev libblas3 159s libboost-dev libboost1.90-dev libbz2-dev libc-dev-bin libc6-dev libcairo2 159s libcc1-0 libcrypt-dev libdatrie1 libdeflate-dev libdeflate0 libfontconfig1 159s libgcc-15-dev libgfortran-15-dev libgfortran5 libgomp1 libgraphite2-3 159s libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl libisl23 159s libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 159s libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim 159s libjs-highlight.js libjs-jquery libjs-jquery-datatables 159s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 159s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 159s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 159s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblerc4 159s liblsan0 liblua5.4-0 liblzma-dev libmpc3 libmpfi0 libncurses-dev 159s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 159s libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 159s libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1 libreadline-dev 159s libsharpyuv0 libsm6 libstdc++-15-dev libsynctex2 libtcl8.6 libteckit0 159s libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 159s libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 159s libxpm4 libxrender1 libxss1 libxt6t64 libzstd-dev libzzip-0-13t64 159s linux-libc-dev node-bootstrap-sass node-html5shiv node-normalize.css pandoc 159s pandoc-data pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 159s r-bioc-annotationdbi r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics 159s r-bioc-biocio r-bioc-biocparallel r-bioc-biocstyle r-bioc-biocversion 159s r-bioc-biomart r-bioc-biostrings r-bioc-delayedarray r-bioc-genomeinfodb 159s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures 159s r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics 159s r-bioc-pwalign r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer 159s r-bioc-s4arrays r-bioc-s4vectors r-bioc-shortread r-bioc-sparsearray 159s r-bioc-summarizedexperiment r-bioc-ucsc.utils r-bioc-xvector r-bioc-zlibbioc 159s r-cran-abind r-cran-askpass r-cran-base64enc r-cran-bh r-cran-biocmanager 159s r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob r-cran-bookdown 159s r-cran-bslib r-cran-cachem r-cran-cli r-cran-codetools r-cran-commonmark 159s r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi r-cran-dbplyr 159s r-cran-deldir r-cran-digest r-cran-dplyr r-cran-evaluate r-cran-fansi 159s r-cran-fastmap r-cran-filelock r-cran-fontawesome r-cran-formatr r-cran-fs 159s r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-glue 159s r-cran-highr r-cran-hms r-cran-htmltools r-cran-httpuv r-cran-httr 159s r-cran-httr2 r-cran-hwriter r-cran-interp r-cran-jpeg r-cran-jquerylib 159s r-cran-jsonlite r-cran-knitr r-cran-lambda.r r-cran-later r-cran-lattice 159s r-cran-latticeextra r-cran-lifecycle r-cran-littler r-cran-magrittr 159s r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mime 159s r-cran-openssl r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr 159s r-cran-png r-cran-prettyunits r-cran-progress r-cran-promises r-cran-purrr 159s r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen 159s r-cran-rcurl r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown 159s r-cran-rsqlite r-cran-runit r-cran-sass r-cran-shiny r-cran-snow 159s r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-sys r-cran-tibble 159s r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-utf8 r-cran-vctrs 159s r-cran-withr r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml 159s rpcsvc-proto t1utils tex-common texlive-base texlive-bibtex-extra 159s texlive-binaries texlive-latex-base unzip x11-common xdg-utils zip 159s zlib1g-dev 160s 0 upgraded, 286 newly installed, 0 to remove and 0 not upgraded. 160s Need to get 440 MB of archives. 160s After this operation, 1398 MB of additional disk space will be used. 160s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 libc-dev-bin arm64 2.42-2ubuntu4 [22.5 kB] 160s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 linux-libc-dev arm64 6.19.0-3.3 [1819 kB] 166s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 libcrypt-dev arm64 1:4.5.1-1 [123 kB] 166s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 rpcsvc-proto arm64 1.4.3-1build1 [65.6 kB] 166s Get:5 http://ftpmaster.internal/ubuntu resolute/main arm64 libc6-dev arm64 2.42-2ubuntu4 [1765 kB] 170s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 libisl23 arm64 0.27-1build1 [676 kB] 171s Get:7 http://ftpmaster.internal/ubuntu resolute/main arm64 libmpc3 arm64 1.3.1-2 [55.6 kB] 171s Get:8 http://ftpmaster.internal/ubuntu resolute/main arm64 cpp-15-aarch64-linux-gnu arm64 15.2.0-12ubuntu1 [11.7 MB] 189s Get:9 http://ftpmaster.internal/ubuntu resolute/main arm64 cpp-15 arm64 15.2.0-12ubuntu1 [1030 B] 189s Get:10 http://ftpmaster.internal/ubuntu resolute/main arm64 cpp-aarch64-linux-gnu arm64 4:15.2.0-4ubuntu1 [5736 B] 189s Get:11 http://ftpmaster.internal/ubuntu resolute/main arm64 cpp arm64 4:15.2.0-4ubuntu1 [22.4 kB] 189s Get:12 http://ftpmaster.internal/ubuntu resolute/main arm64 libcc1-0 arm64 15.2.0-12ubuntu1 [49.0 kB] 189s Get:13 http://ftpmaster.internal/ubuntu resolute/main arm64 libgomp1 arm64 15.2.0-12ubuntu1 [147 kB] 189s Get:14 http://ftpmaster.internal/ubuntu resolute/main arm64 libitm1 arm64 15.2.0-12ubuntu1 [27.8 kB] 189s Get:15 http://ftpmaster.internal/ubuntu resolute/main arm64 libasan8 arm64 15.2.0-12ubuntu1 [2920 kB] 194s Get:16 http://ftpmaster.internal/ubuntu resolute/main arm64 liblsan0 arm64 15.2.0-12ubuntu1 [1316 kB] 196s Get:17 http://ftpmaster.internal/ubuntu resolute/main arm64 libtsan2 arm64 15.2.0-12ubuntu1 [2688 kB] 202s Get:18 http://ftpmaster.internal/ubuntu resolute/main arm64 libubsan1 arm64 15.2.0-12ubuntu1 [1175 kB] 204s Get:19 http://ftpmaster.internal/ubuntu resolute/main arm64 libhwasan0 arm64 15.2.0-12ubuntu1 [1638 kB] 208s Get:20 http://ftpmaster.internal/ubuntu resolute/main arm64 libgcc-15-dev arm64 15.2.0-12ubuntu1 [2600 kB] 213s Get:21 http://ftpmaster.internal/ubuntu resolute/main arm64 gcc-15-aarch64-linux-gnu arm64 15.2.0-12ubuntu1 [23.1 MB] 253s Get:22 http://ftpmaster.internal/ubuntu resolute/main arm64 gcc-15 arm64 15.2.0-12ubuntu1 [519 kB] 253s Get:23 http://ftpmaster.internal/ubuntu resolute/main arm64 gcc-aarch64-linux-gnu arm64 4:15.2.0-4ubuntu1 [1206 B] 253s Get:24 http://ftpmaster.internal/ubuntu resolute/main arm64 gcc arm64 4:15.2.0-4ubuntu1 [5016 B] 253s Get:25 http://ftpmaster.internal/ubuntu resolute/main arm64 libstdc++-15-dev arm64 15.2.0-12ubuntu1 [2549 kB] 257s Get:26 http://ftpmaster.internal/ubuntu resolute/main arm64 g++-15-aarch64-linux-gnu arm64 15.2.0-12ubuntu1 [13.2 MB] 279s Get:27 http://ftpmaster.internal/ubuntu resolute/main arm64 g++-15 arm64 15.2.0-12ubuntu1 [25.3 kB] 279s Get:28 http://ftpmaster.internal/ubuntu resolute/main arm64 g++-aarch64-linux-gnu arm64 4:15.2.0-4ubuntu1 [956 B] 279s Get:29 http://ftpmaster.internal/ubuntu resolute/main arm64 g++ arm64 4:15.2.0-4ubuntu1 [1080 B] 279s Get:30 http://ftpmaster.internal/ubuntu resolute/main arm64 build-essential arm64 12.12ubuntu2 [5254 B] 279s Get:31 http://ftpmaster.internal/ubuntu resolute/main arm64 dctrl-tools arm64 2.24-3build4 [102 kB] 279s Get:32 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-mono all 2.37-8build1 [502 kB] 279s Get:33 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-core all 2.37-8build1 [834 kB] 281s Get:34 http://ftpmaster.internal/ubuntu resolute/main arm64 fontconfig-config arm64 2.17.1-3ubuntu1 [38.5 kB] 281s Get:35 http://ftpmaster.internal/ubuntu resolute/main arm64 libfontconfig1 arm64 2.17.1-3ubuntu1 [144 kB] 281s Get:36 http://ftpmaster.internal/ubuntu resolute/main arm64 fontconfig arm64 2.17.1-3ubuntu1 [181 kB] 281s Get:37 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1build1 [531 kB] 283s Get:38 http://ftpmaster.internal/ubuntu resolute/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-6 [119 kB] 283s Get:39 http://ftpmaster.internal/ubuntu resolute/universe arm64 fonts-lmodern all 2.005-1build1 [4788 kB] 293s Get:40 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-mathjax all 2.7.9+dfsg-1build1 [2283 kB] 296s Get:41 http://ftpmaster.internal/ubuntu resolute/main arm64 libgfortran5 arm64 15.2.0-12ubuntu1 [451 kB] 296s Get:42 http://ftpmaster.internal/ubuntu resolute/main arm64 libgfortran-15-dev arm64 15.2.0-12ubuntu1 [490 kB] 296s Get:43 http://ftpmaster.internal/ubuntu resolute/main arm64 gfortran-15-aarch64-linux-gnu arm64 15.2.0-12ubuntu1 [12.5 MB] 317s Get:44 http://ftpmaster.internal/ubuntu resolute/main arm64 gfortran-15 arm64 15.2.0-12ubuntu1 [18.1 kB] 317s Get:45 http://ftpmaster.internal/ubuntu resolute/main arm64 gfortran-aarch64-linux-gnu arm64 4:15.2.0-4ubuntu1 [1022 B] 317s Get:46 http://ftpmaster.internal/ubuntu resolute/main arm64 gfortran arm64 4:15.2.0-4ubuntu1 [1160 B] 317s Get:47 http://ftpmaster.internal/ubuntu resolute/main arm64 icu-devtools arm64 78.2-1ubuntu1 [207 kB] 317s Get:48 http://ftpmaster.internal/ubuntu resolute/main arm64 javascript-common all 12+nmu1build1 [4864 B] 317s Get:49 http://ftpmaster.internal/ubuntu resolute/main arm64 libio-string-perl all 1.08-4 [11.1 kB] 317s Get:50 http://ftpmaster.internal/ubuntu resolute/universe arm64 liblatex-tounicode-perl all 1.93-1 [29.2 kB] 317s Get:51 http://ftpmaster.internal/ubuntu resolute/universe arm64 libbibtex-parser-perl all 1.93+dfsg-1 [17.4 kB] 317s Get:52 http://ftpmaster.internal/ubuntu resolute/main arm64 libblas3 arm64 3.12.1-7ubuntu1 [181 kB] 317s Get:53 http://ftpmaster.internal/ubuntu resolute/main arm64 libblas-dev arm64 3.12.1-7ubuntu1 [160 kB] 317s Get:54 http://ftpmaster.internal/ubuntu resolute/main arm64 libboost1.90-dev arm64 1.90.0-2ubuntu1 [11.5 MB] 338s Get:55 http://ftpmaster.internal/ubuntu resolute/main arm64 libboost-dev arm64 1.90.0.0ubuntu3 [4764 B] 338s Get:56 http://ftpmaster.internal/ubuntu resolute/main arm64 libbz2-dev arm64 1.0.8-6build2 [34.9 kB] 338s Get:57 http://ftpmaster.internal/ubuntu resolute/main arm64 libpixman-1-0 arm64 0.46.4-1 [204 kB] 338s Get:58 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-render0 arm64 1.17.0-2ubuntu1 [16.4 kB] 338s Get:59 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-shm0 arm64 1.17.0-2ubuntu1 [5938 B] 338s Get:60 http://ftpmaster.internal/ubuntu resolute/main arm64 libxrender1 arm64 1:0.9.12-1 [19.5 kB] 338s Get:61 http://ftpmaster.internal/ubuntu resolute/main arm64 libcairo2 arm64 1.18.4-3 [556 kB] 339s Get:62 http://ftpmaster.internal/ubuntu resolute/main arm64 libdatrie1 arm64 0.2.14-1 [19.6 kB] 339s Get:63 http://ftpmaster.internal/ubuntu resolute/main arm64 libdeflate0 arm64 1.23-2build1 [46.8 kB] 339s Get:64 http://ftpmaster.internal/ubuntu resolute/main arm64 libdeflate-dev arm64 1.23-2build1 [54.3 kB] 339s Get:65 http://ftpmaster.internal/ubuntu resolute/main arm64 libgraphite2-3 arm64 1.3.14-11ubuntu1 [72.1 kB] 339s Get:66 http://ftpmaster.internal/ubuntu resolute/main arm64 libharfbuzz0b arm64 12.3.2-1 [510 kB] 340s Get:67 http://ftpmaster.internal/ubuntu resolute/main arm64 x11-common all 1:7.7+24ubuntu1 [22.4 kB] 340s Get:68 http://ftpmaster.internal/ubuntu resolute/main arm64 libice6 arm64 2:1.1.1-1build1 [43.0 kB] 340s Get:69 http://ftpmaster.internal/ubuntu resolute/main arm64 libicu-dev arm64 78.2-1ubuntu1 [12.5 MB] 361s Get:70 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg-turbo8 arm64 2.1.5-4ubuntu3 [161 kB] 361s Get:71 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg-turbo8-dev arm64 2.1.5-4ubuntu3 [301 kB] 361s Get:72 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 361s Get:73 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 361s Get:74 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 361s Get:75 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-bootstrap all 3.4.1+dfsg-6 [129 kB] 361s Get:76 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-popper.js all 1.16.1+ds-6build1 [53.8 kB] 361s Get:77 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-bootstrap4 all 4.6.2+dfsg-1 [532 kB] 362s Get:78 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-d3 all 3.5.17-4build1 [136 kB] 362s Get:79 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 362s Get:80 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-highlight.js all 10.7.3+dfsg-2 [144 kB] 362s Get:81 http://ftpmaster.internal/ubuntu resolute/main arm64 libjs-jquery all 3.7.1+dfsg+~3.5.33-1build1 [321 kB] 362s Get:82 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2build1 [145 kB] 362s Get:83 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 362s Get:84 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-2 [3946 B] 362s Get:85 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 362s Get:86 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1build1 [251 kB] 362s Get:87 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-json all 0~20221030+~1.0.8-1build1 [20.6 kB] 362s Get:88 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 362s Get:89 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-prettify all 2015.12.04+dfsg-3 [41.4 kB] 362s Get:90 http://ftpmaster.internal/ubuntu resolute/universe arm64 libkpathsea6 arm64 2025.20250727.75242+ds-5build1 [65.4 kB] 362s Get:91 http://ftpmaster.internal/ubuntu resolute/main arm64 liblapack3 arm64 3.12.1-7ubuntu1 [2299 kB] 366s Get:92 http://ftpmaster.internal/ubuntu resolute/main arm64 liblapack-dev arm64 3.12.1-7ubuntu1 [4456 kB] 373s Get:93 http://ftpmaster.internal/ubuntu resolute/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu2 [174 kB] 373s Get:94 http://ftpmaster.internal/ubuntu resolute/main arm64 liblua5.4-0 arm64 5.4.8-1 [171 kB] 373s Get:95 http://ftpmaster.internal/ubuntu resolute/universe arm64 libmpfi0 arm64 1.5.4+ds-4build1 [36.4 kB] 373s Get:96 http://ftpmaster.internal/ubuntu resolute/main arm64 libncurses-dev arm64 6.6+20251231-1 [391 kB] 373s Get:97 http://ftpmaster.internal/ubuntu resolute/main arm64 libthai-data all 0.1.30-1 [155 kB] 373s Get:98 http://ftpmaster.internal/ubuntu resolute/main arm64 libthai0 arm64 0.1.30-1 [18.3 kB] 373s Get:99 http://ftpmaster.internal/ubuntu resolute/main arm64 libpango-1.0-0 arm64 1.57.0-1 [238 kB] 373s Get:100 http://ftpmaster.internal/ubuntu resolute/main arm64 libpangoft2-1.0-0 arm64 1.57.0-1 [51.5 kB] 373s Get:101 http://ftpmaster.internal/ubuntu resolute/main arm64 libpangocairo-1.0-0 arm64 1.57.0-1 [27.9 kB] 373s Get:102 http://ftpmaster.internal/ubuntu resolute/main arm64 libpaper2 arm64 2.2.5-0.3build1 [17.3 kB] 373s Get:103 http://ftpmaster.internal/ubuntu resolute/main arm64 libpaper-utils arm64 2.2.5-0.3build1 [15.4 kB] 373s Get:104 http://ftpmaster.internal/ubuntu resolute/main arm64 libpcre2-16-0 arm64 10.46-1 [225 kB] 373s Get:105 http://ftpmaster.internal/ubuntu resolute/main arm64 libpcre2-32-0 arm64 10.46-1 [213 kB] 373s Get:106 http://ftpmaster.internal/ubuntu resolute/main arm64 libpcre2-posix3 arm64 10.46-1 [7300 B] 374s Get:107 http://ftpmaster.internal/ubuntu resolute/main arm64 libpcre2-dev arm64 10.46-1 [772 kB] 375s Get:108 http://ftpmaster.internal/ubuntu resolute/main arm64 libpkgconf3 arm64 1.8.1-4build1 [33.7 kB] 375s Get:109 http://ftpmaster.internal/ubuntu resolute/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu2 [899 kB] 378s Get:110 http://ftpmaster.internal/ubuntu resolute/main arm64 libpng-dev arm64 1.6.54-1 [268 kB] 378s Get:111 http://ftpmaster.internal/ubuntu resolute/universe arm64 libpotrace0 arm64 1.16-2build2 [16.3 kB] 378s Get:112 http://ftpmaster.internal/ubuntu resolute/universe arm64 libptexenc1 arm64 2025.20250727.75242+ds-5build1 [46.2 kB] 378s Get:113 http://ftpmaster.internal/ubuntu resolute/main arm64 libreadline-dev arm64 8.3-3 [199 kB] 378s Get:114 http://ftpmaster.internal/ubuntu resolute/main arm64 libsharpyuv0 arm64 1.5.0-0.1build1 [16.7 kB] 378s Get:115 http://ftpmaster.internal/ubuntu resolute/main arm64 libsm6 arm64 2:1.2.6-1build1 [16.8 kB] 378s Get:116 http://ftpmaster.internal/ubuntu resolute/universe arm64 libsynctex2 arm64 2025.20250727.75242+ds-5build1 [61.4 kB] 378s Get:117 http://ftpmaster.internal/ubuntu resolute/main arm64 libtcl8.6 arm64 8.6.17+dfsg-1build1 [983 kB] 380s Get:118 http://ftpmaster.internal/ubuntu resolute/universe arm64 libteckit0 arm64 2.5.13+ds-1 [393 kB] 380s Get:119 http://ftpmaster.internal/ubuntu resolute/universe arm64 libtexlua53-5 arm64 2025.20250727.75242+ds-5build1 [122 kB] 380s Get:120 http://ftpmaster.internal/ubuntu resolute/main arm64 libjbig0 arm64 2.1-6.1ubuntu3 [29.2 kB] 380s Get:121 http://ftpmaster.internal/ubuntu resolute/main arm64 libwebp7 arm64 1.5.0-0.1build1 [205 kB] 380s Get:122 http://ftpmaster.internal/ubuntu resolute/main arm64 libtiff6 arm64 4.7.0-3ubuntu3 [196 kB] 380s Get:123 http://ftpmaster.internal/ubuntu resolute/main arm64 libxft2 arm64 2.3.6-1build2 [43.2 kB] 380s Get:124 http://ftpmaster.internal/ubuntu resolute/main arm64 libxss1 arm64 1:1.2.3-1build4 [7102 B] 380s Get:125 http://ftpmaster.internal/ubuntu resolute/main arm64 libtk8.6 arm64 8.6.17-1 [811 kB] 383s Get:126 http://ftpmaster.internal/ubuntu resolute/main arm64 libxt6t64 arm64 1:1.2.1-1.3 [168 kB] 383s Get:127 http://ftpmaster.internal/ubuntu resolute/main arm64 libxmu6 arm64 2:1.1.3-4 [47.6 kB] 383s Get:128 http://ftpmaster.internal/ubuntu resolute/main arm64 libxpm4 arm64 1:3.5.17-1build3 [35.5 kB] 383s Get:129 http://ftpmaster.internal/ubuntu resolute/main arm64 libxaw7 arm64 2:1.0.16-1build1 [183 kB] 383s Get:130 http://ftpmaster.internal/ubuntu resolute/main arm64 libxi6 arm64 2:1.8.2-2 [32.4 kB] 383s Get:131 http://ftpmaster.internal/ubuntu resolute/main arm64 libzstd-dev arm64 1.5.7+dfsg-3 [349 kB] 383s Get:132 http://ftpmaster.internal/ubuntu resolute/universe arm64 libzzip-0-13t64 arm64 0.13.78+dfsg.1-0.2 [30.7 kB] 383s Get:133 http://ftpmaster.internal/ubuntu resolute/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 383s Get:134 http://ftpmaster.internal/ubuntu resolute/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 383s Get:135 http://ftpmaster.internal/ubuntu resolute/universe arm64 node-normalize.css all 8.0.1-5.1 [10.4 kB] 383s Get:136 http://ftpmaster.internal/ubuntu resolute/universe arm64 pandoc-data all 3.1.11.1-3build1 [78.8 kB] 383s Get:137 http://ftpmaster.internal/ubuntu resolute/universe arm64 pandoc arm64 3.1.11.1+ds-4 [28.0 MB] 471s Get:138 http://ftpmaster.internal/ubuntu resolute/main arm64 zip arm64 3.0-15ubuntu3 [170 kB] 471s Get:139 http://ftpmaster.internal/ubuntu resolute/main arm64 unzip arm64 6.0-29ubuntu1 [176 kB] 471s Get:140 http://ftpmaster.internal/ubuntu resolute/main arm64 xdg-utils all 1.2.1-2ubuntu2 [66.1 kB] 471s Get:141 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-base-core arm64 4.5.2-1ubuntu2 [28.6 MB] 515s Get:142 http://ftpmaster.internal/ubuntu resolute/main arm64 liblzma-dev arm64 5.8.2-2 [180 kB] 515s Get:143 http://ftpmaster.internal/ubuntu resolute/main arm64 pkgconf-bin arm64 1.8.1-4build1 [21.7 kB] 515s Get:144 http://ftpmaster.internal/ubuntu resolute/main arm64 pkgconf arm64 1.8.1-4build1 [16.8 kB] 515s Get:145 http://ftpmaster.internal/ubuntu resolute/main arm64 libtirpc-dev arm64 1.3.6+ds-1 [202 kB] 515s Get:146 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-base-dev all 4.5.2-1ubuntu2 [1880 B] 515s Get:147 http://ftpmaster.internal/ubuntu resolute/universe arm64 pkg-r-autopkgtest all 20250812 [6158 B] 515s Get:148 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-biocgenerics all 0.52.0-2 [624 kB] 516s Get:149 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-biobase arm64 2.66.0-2 [2331 kB] 520s Get:150 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-s4vectors arm64 0.44.0+dfsg-2 [2054 kB] 523s Get:151 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-iranges arm64 2.40.1-3 [2301 kB] 526s Get:152 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-dbi all 1.2.3-1build1 [855 kB] 527s Get:153 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-bit arm64 4.6.0+dfsg-1 [450 kB] 527s Get:154 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-bit64 arm64 4.6.0-1-4 [495 kB] 527s Get:155 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rlang arm64 1.1.5-3 [1706 kB] 529s Get:156 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-cli arm64 3.6.4-1 [1374 kB] 531s Get:157 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-glue arm64 1.8.0-1 [163 kB] 531s Get:158 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-lifecycle all 1.0.5+dfsg-1 [120 kB] 531s Get:159 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 533s Get:160 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-blob all 1.3.0-1 [54.1 kB] 533s Get:161 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-fastmap arm64 1.2.0-1 [70.6 kB] 533s Get:162 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-cachem arm64 1.1.0-1 [74.1 kB] 533s Get:163 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-memoise all 2.0.1-1build1 [54.5 kB] 533s Get:164 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-pkgconfig all 2.0.3-2build2 [20.4 kB] 533s Get:165 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-plogr all 0.2.0-3build2 [15.8 kB] 533s Get:166 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-cpp11 all 0.5.3-1 [242 kB] 533s Get:167 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rsqlite arm64 2.3.9-1 [1247 kB] 535s Get:168 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-curl arm64 7.0.0+dfsg-1 [202 kB] 535s Get:169 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-jsonlite arm64 1.9.1+dfsg-1 [445 kB] 535s Get:170 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-mime arm64 0.12-2 [35.8 kB] 535s Get:171 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-sys arm64 3.4.3-1 [45.2 kB] 535s Get:172 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-askpass arm64 1.2.1-1 [24.8 kB] 535s Get:173 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-openssl arm64 2.3.2+dfsg-1 [406 kB] 535s Get:174 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-r6 all 2.6.1-1 [101 kB] 535s Get:175 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 535s Get:176 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-png arm64 0.1-8-1build2 [40.1 kB] 535s Get:177 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB] 535s Get:178 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-xvector arm64 0.46.0-2 [618 kB] 536s Get:179 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-ucsc.utils all 1.2.0+ds-2 [77.2 kB] 536s Get:180 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB] 556s Get:181 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-genomeinfodb all 1.42.3+dfsg-1 [3887 kB] 563s Get:182 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-crayon all 1.5.3-1 [165 kB] 563s Get:183 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-biostrings arm64 2.74.1+dfsg-2 [13.3 MB] 582s Get:184 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-keggrest all 1.46.0+dfsg-3 [183 kB] 582s Get:185 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-annotationdbi all 1.68.0-2 [4857 kB] 590s Get:186 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-generics all 0.1.4-1 [84.0 kB] 590s Get:187 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 590s Get:188 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 590s Get:189 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-pillar all 1.11.1+dfsg-1 [456 kB] 590s Get:190 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-fansi arm64 1.0.6-2 [627 kB] 591s Get:191 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-3 [420 kB] 591s Get:192 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 591s Get:193 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-tidyselect arm64 1.2.1+dfsg-1 [222 kB] 591s Get:194 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-dplyr arm64 1.1.4-4 [1534 kB] 594s Get:195 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-purrr arm64 1.0.4-1 [552 kB] 595s Get:196 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-stringi arm64 1.8.4-1build2 [901 kB] 596s Get:197 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB] 596s Get:198 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-tidyr arm64 1.3.1-1 [1154 kB] 598s Get:199 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-dbplyr all 2.5.1+dfsg-1 [1237 kB] 600s Get:200 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-filelock arm64 1.0.3-1 [29.7 kB] 600s Get:201 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-biocfilecache all 2.14.0+dfsg-2 [300 kB] 600s Get:202 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-biocio all 1.16.0+dfsg-2 [209 kB] 600s Get:203 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-formatr all 1.14-2 [152 kB] 600s Get:204 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-lambda.r all 1.2.4-2build2 [118 kB] 600s Get:205 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-futile.options all 1.0.1-3build2 [20.5 kB] 600s Get:206 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-futile.logger all 1.4.3-4build2 [98.4 kB] 600s Get:207 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-snow all 1:0.4.4-2build1 [98.7 kB] 600s Get:208 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-codetools all 0.2-20-1build1 [91.1 kB] 600s Get:209 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-bh all 1.84.0-1 [5962 B] 600s Get:210 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-biocparallel arm64 1.40.0-2 [1333 kB] 602s Get:211 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-base64enc arm64 0.1-3-3build1 [28.5 kB] 602s Get:212 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-digest arm64 0.6.39-1 [196 kB] 602s Get:213 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-htmltools arm64 0.5.8.1-1 [373 kB] 602s Get:214 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-evaluate all 1.0.5-1 [117 kB] 602s Get:215 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-xfun arm64 0.55+dfsg-1 [587 kB] 603s Get:216 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 603s Get:217 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-yaml arm64 2.3.10-1 [108 kB] 603s Get:218 http://ftpmaster.internal/ubuntu resolute/main arm64 libjs-mathjax all 2.7.9+dfsg-1build1 [6017 kB] 612s Get:219 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-knitr all 1.51+dfsg-1 [847 kB] 613s Get:220 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-5 [13.7 kB] 613s Get:221 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-fs arm64 1.6.5+dfsg-1 [244 kB] 613s Get:222 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rappdirs arm64 0.3.3-1build1 [49.5 kB] 613s Get:223 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-sass arm64 0.4.9+dfsg-1 [957 kB] 614s Get:224 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-bslib all 0.9.0+dfsg-3build1 [4560 kB] 621s Get:225 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-fontawesome all 0.5.3-1 [1331 kB] 623s Get:226 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-tinytex all 0.58-1 [148 kB] 623s Get:227 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-modernizr all 3.13.0-0.1build1 [100 kB] 623s Get:228 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-littler arm64 0.3.22-1 [85.1 kB] 623s Get:229 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 623s Get:230 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rcpp arm64 1.1.0-1 [2011 kB] 627s Get:231 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-later arm64 1.4.1+dfsg-1 [141 kB] 627s Get:232 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-promises arm64 1.3.2+dfsg-1 [290 kB] 627s Get:233 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-httpuv arm64 1.6.15+dfsg-1 [489 kB] 627s Get:234 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-xtable all 1:1.8-4-2build1 [691 kB] 628s Get:235 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 628s Get:236 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-commonmark arm64 1.9.5-1 [130 kB] 628s Get:237 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 628s Get:238 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB] 634s Get:239 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rmarkdown all 2.30+dfsg-1 [1501 kB] 637s Get:240 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-bookdown all 0.42+dfsg-1 [1409 kB] 640s Get:241 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB] 640s Get:242 http://ftpmaster.internal/ubuntu resolute/universe arm64 tex-common all 6.20 [30.0 kB] 640s Get:243 http://ftpmaster.internal/ubuntu resolute/main arm64 t1utils arm64 1.41-4build4 [59.8 kB] 640s Get:244 http://ftpmaster.internal/ubuntu resolute/universe arm64 texlive-binaries arm64 2025.20250727.75242+ds-5build1 [8302 kB] 652s Get:245 http://ftpmaster.internal/ubuntu resolute/universe arm64 texlive-base all 2025.20260124-1 [22.8 MB] 687s Get:246 http://ftpmaster.internal/ubuntu resolute/universe arm64 texlive-latex-base all 2025.20260124-1 [1321 kB] 689s Get:247 http://ftpmaster.internal/ubuntu resolute/universe arm64 texlive-bibtex-extra all 2025.20260124-1 [80.6 MB] 818s Get:248 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-biocversion all 3.20.0-2 [11.1 kB] 818s Get:249 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-biocstyle all 2.34.0+dfsg-1 [451 kB] 818s Get:250 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-hms all 1.1.4-1 [102 kB] 818s Get:251 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-prettyunits all 1.2.0-1 [162 kB] 818s Get:252 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-progress all 1.2.3-1 [91.9 kB] 818s Get:253 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-httr2 all 1.1.1-2 [752 kB] 820s Get:254 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-xml2 arm64 1.4.1-1 [326 kB] 820s Get:255 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-biomart all 2.62.1+dfsg-1 [444 kB] 820s Get:256 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 r-cran-lattice arm64 0.22-9-1 [1399 kB] 822s Get:257 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-matrix arm64 1.7-4-1 [4146 kB] 830s Get:258 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-matrixstats arm64 1.5.0-1 [496 kB] 830s Get:259 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-matrixgenerics all 1.18.1-1 [450 kB] 830s Get:260 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-abind all 1.4-8-1build1 [67.0 kB] 830s Get:261 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-s4arrays arm64 1.6.0+dfsg-2 [698 kB] 832s Get:262 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-sparsearray arm64 1.6.2+dfsg-2 [1369 kB] 834s Get:263 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-delayedarray arm64 0.32.0+dfsg-2 [2064 kB] 839s Get:264 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-genomicranges arm64 1.58.0+dfsg-2 [2083 kB] 843s Get:265 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-summarizedexperiment all 1.36.0+dfsg-2 [1109 kB] 845s Get:266 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-bitops arm64 1.0-9-1 [30.2 kB] 845s Get:267 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-rhtslib arm64 3.2.0+dfsg-2 [1429 kB] 847s Get:268 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-rsamtools arm64 2.22.0+dfsg-2 [3668 kB] 853s Get:269 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-genomicalignments arm64 1.42.0-2 [2164 kB] 858s Get:270 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-xml arm64 3.99-0.20-1 [1749 kB] 861s Get:271 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rcurl arm64 1.98-1.16+dfsg-1 [806 kB] 863s Get:272 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rjson arm64 0.2.23-1 [104 kB] 863s Get:273 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-restfulr arm64 0.0.15-1 [380 kB] 863s Get:274 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-rtracklayer arm64 1.66.0-3 [5216 kB] 872s Get:275 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-genomicfeatures all 1.58.0+dfsg-2 [937 kB] 875s Get:276 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-pwalign arm64 1.2.0-3 [753 kB] 877s Get:277 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-hwriter all 1.3.2.1-1 [106 kB] 878s Get:278 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-jpeg arm64 0.1-10-1 [30.8 kB] 878s Get:279 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build2 [54.0 kB] 878s Get:280 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-deldir arm64 2.0-4-1build1 [270 kB] 878s Get:281 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rcppeigen arm64 0.3.4.0.2-1 [1422 kB] 883s Get:282 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-interp arm64 1.1-6-1 [1433 kB] 886s Get:283 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-mass arm64 7.3-65-1 [1109 kB] 887s Get:284 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-latticeextra all 0.6-31-1 [2177 kB] 891s Get:285 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-shortread arm64 1.64.0-3 [5243 kB] 900s Get:286 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-runit all 0.4.33.1-1 [250 kB] 900s Preconfiguring packages ... 901s Fetched 440 MB in 12min 21s (595 kB/s) 901s Selecting previously unselected package libc-dev-bin. 901s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 136600 files and directories currently installed.) 901s Preparing to unpack .../000-libc-dev-bin_2.42-2ubuntu4_arm64.deb ... 901s Unpacking libc-dev-bin (2.42-2ubuntu4) ... 901s Selecting previously unselected package linux-libc-dev:arm64. 901s Preparing to unpack .../001-linux-libc-dev_6.19.0-3.3_arm64.deb ... 901s Unpacking linux-libc-dev:arm64 (6.19.0-3.3) ... 901s Selecting previously unselected package libcrypt-dev:arm64. 901s Preparing to unpack .../002-libcrypt-dev_1%3a4.5.1-1_arm64.deb ... 901s Unpacking libcrypt-dev:arm64 (1:4.5.1-1) ... 901s Selecting previously unselected package rpcsvc-proto. 901s Preparing to unpack .../003-rpcsvc-proto_1.4.3-1build1_arm64.deb ... 901s Unpacking rpcsvc-proto (1.4.3-1build1) ... 901s Selecting previously unselected package libc6-dev:arm64. 901s Preparing to unpack .../004-libc6-dev_2.42-2ubuntu4_arm64.deb ... 901s Unpacking libc6-dev:arm64 (2.42-2ubuntu4) ... 901s Selecting previously unselected package libisl23:arm64. 901s Preparing to unpack .../005-libisl23_0.27-1build1_arm64.deb ... 901s Unpacking libisl23:arm64 (0.27-1build1) ... 901s Selecting previously unselected package libmpc3:arm64. 901s Preparing to unpack .../006-libmpc3_1.3.1-2_arm64.deb ... 901s Unpacking libmpc3:arm64 (1.3.1-2) ... 901s Selecting previously unselected package cpp-15-aarch64-linux-gnu. 901s Preparing to unpack .../007-cpp-15-aarch64-linux-gnu_15.2.0-12ubuntu1_arm64.deb ... 901s Unpacking cpp-15-aarch64-linux-gnu (15.2.0-12ubuntu1) ... 901s Selecting previously unselected package cpp-15. 901s Preparing to unpack .../008-cpp-15_15.2.0-12ubuntu1_arm64.deb ... 901s Unpacking cpp-15 (15.2.0-12ubuntu1) ... 901s Selecting previously unselected package cpp-aarch64-linux-gnu. 901s Preparing to unpack .../009-cpp-aarch64-linux-gnu_4%3a15.2.0-4ubuntu1_arm64.deb ... 901s Unpacking cpp-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 901s Selecting previously unselected package cpp. 901s Preparing to unpack .../010-cpp_4%3a15.2.0-4ubuntu1_arm64.deb ... 901s Unpacking cpp (4:15.2.0-4ubuntu1) ... 901s Selecting previously unselected package libcc1-0:arm64. 901s Preparing to unpack .../011-libcc1-0_15.2.0-12ubuntu1_arm64.deb ... 901s Unpacking libcc1-0:arm64 (15.2.0-12ubuntu1) ... 901s Selecting previously unselected package libgomp1:arm64. 901s Preparing to unpack .../012-libgomp1_15.2.0-12ubuntu1_arm64.deb ... 901s Unpacking libgomp1:arm64 (15.2.0-12ubuntu1) ... 901s Selecting previously unselected package libitm1:arm64. 902s Preparing to unpack .../013-libitm1_15.2.0-12ubuntu1_arm64.deb ... 902s Unpacking libitm1:arm64 (15.2.0-12ubuntu1) ... 902s Selecting previously unselected package libasan8:arm64. 902s Preparing to unpack .../014-libasan8_15.2.0-12ubuntu1_arm64.deb ... 902s Unpacking libasan8:arm64 (15.2.0-12ubuntu1) ... 902s Selecting previously unselected package liblsan0:arm64. 902s Preparing to unpack .../015-liblsan0_15.2.0-12ubuntu1_arm64.deb ... 902s Unpacking liblsan0:arm64 (15.2.0-12ubuntu1) ... 902s Selecting previously unselected package libtsan2:arm64. 902s Preparing to unpack .../016-libtsan2_15.2.0-12ubuntu1_arm64.deb ... 902s Unpacking libtsan2:arm64 (15.2.0-12ubuntu1) ... 902s Selecting previously unselected package libubsan1:arm64. 902s Preparing to unpack .../017-libubsan1_15.2.0-12ubuntu1_arm64.deb ... 902s Unpacking libubsan1:arm64 (15.2.0-12ubuntu1) ... 902s Selecting previously unselected package libhwasan0:arm64. 902s Preparing to unpack .../018-libhwasan0_15.2.0-12ubuntu1_arm64.deb ... 902s Unpacking libhwasan0:arm64 (15.2.0-12ubuntu1) ... 902s Selecting previously unselected package libgcc-15-dev:arm64. 902s Preparing to unpack .../019-libgcc-15-dev_15.2.0-12ubuntu1_arm64.deb ... 902s Unpacking libgcc-15-dev:arm64 (15.2.0-12ubuntu1) ... 902s Selecting previously unselected package gcc-15-aarch64-linux-gnu. 902s Preparing to unpack .../020-gcc-15-aarch64-linux-gnu_15.2.0-12ubuntu1_arm64.deb ... 902s Unpacking gcc-15-aarch64-linux-gnu (15.2.0-12ubuntu1) ... 902s Selecting previously unselected package gcc-15. 902s Preparing to unpack .../021-gcc-15_15.2.0-12ubuntu1_arm64.deb ... 902s Unpacking gcc-15 (15.2.0-12ubuntu1) ... 903s Selecting previously unselected package gcc-aarch64-linux-gnu. 903s Preparing to unpack .../022-gcc-aarch64-linux-gnu_4%3a15.2.0-4ubuntu1_arm64.deb ... 903s Unpacking gcc-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 903s Selecting previously unselected package gcc. 903s Preparing to unpack .../023-gcc_4%3a15.2.0-4ubuntu1_arm64.deb ... 903s Unpacking gcc (4:15.2.0-4ubuntu1) ... 903s Selecting previously unselected package libstdc++-15-dev:arm64. 903s Preparing to unpack .../024-libstdc++-15-dev_15.2.0-12ubuntu1_arm64.deb ... 903s Unpacking libstdc++-15-dev:arm64 (15.2.0-12ubuntu1) ... 903s Selecting previously unselected package g++-15-aarch64-linux-gnu. 903s Preparing to unpack .../025-g++-15-aarch64-linux-gnu_15.2.0-12ubuntu1_arm64.deb ... 903s Unpacking g++-15-aarch64-linux-gnu (15.2.0-12ubuntu1) ... 903s Selecting previously unselected package g++-15. 903s Preparing to unpack .../026-g++-15_15.2.0-12ubuntu1_arm64.deb ... 903s Unpacking g++-15 (15.2.0-12ubuntu1) ... 903s Selecting previously unselected package g++-aarch64-linux-gnu. 903s Preparing to unpack .../027-g++-aarch64-linux-gnu_4%3a15.2.0-4ubuntu1_arm64.deb ... 903s Unpacking g++-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 903s Selecting previously unselected package g++. 903s Preparing to unpack .../028-g++_4%3a15.2.0-4ubuntu1_arm64.deb ... 903s Unpacking g++ (4:15.2.0-4ubuntu1) ... 903s Selecting previously unselected package build-essential. 903s Preparing to unpack .../029-build-essential_12.12ubuntu2_arm64.deb ... 903s Unpacking build-essential (12.12ubuntu2) ... 903s Selecting previously unselected package dctrl-tools. 903s Preparing to unpack .../030-dctrl-tools_2.24-3build4_arm64.deb ... 903s Unpacking dctrl-tools (2.24-3build4) ... 903s Selecting previously unselected package fonts-dejavu-mono. 903s Preparing to unpack .../031-fonts-dejavu-mono_2.37-8build1_all.deb ... 903s Unpacking fonts-dejavu-mono (2.37-8build1) ... 903s Selecting previously unselected package fonts-dejavu-core. 903s Preparing to unpack .../032-fonts-dejavu-core_2.37-8build1_all.deb ... 903s Unpacking fonts-dejavu-core (2.37-8build1) ... 903s Selecting previously unselected package fontconfig-config. 903s Preparing to unpack .../033-fontconfig-config_2.17.1-3ubuntu1_arm64.deb ... 904s Unpacking fontconfig-config (2.17.1-3ubuntu1) ... 904s Selecting previously unselected package libfontconfig1:arm64. 904s Preparing to unpack .../034-libfontconfig1_2.17.1-3ubuntu1_arm64.deb ... 904s Unpacking libfontconfig1:arm64 (2.17.1-3ubuntu1) ... 904s Selecting previously unselected package fontconfig. 904s Preparing to unpack .../035-fontconfig_2.17.1-3ubuntu1_arm64.deb ... 904s Unpacking fontconfig (2.17.1-3ubuntu1) ... 904s Selecting previously unselected package fonts-font-awesome. 904s Preparing to unpack .../036-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1build1_all.deb ... 904s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1build1) ... 904s Selecting previously unselected package fonts-glyphicons-halflings. 904s Preparing to unpack .../037-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-6_all.deb ... 904s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-6) ... 904s Selecting previously unselected package fonts-lmodern. 904s Preparing to unpack .../038-fonts-lmodern_2.005-1build1_all.deb ... 904s Unpacking fonts-lmodern (2.005-1build1) ... 904s Selecting previously unselected package fonts-mathjax. 904s Preparing to unpack .../039-fonts-mathjax_2.7.9+dfsg-1build1_all.deb ... 904s Unpacking fonts-mathjax (2.7.9+dfsg-1build1) ... 904s Selecting previously unselected package libgfortran5:arm64. 904s Preparing to unpack .../040-libgfortran5_15.2.0-12ubuntu1_arm64.deb ... 904s Unpacking libgfortran5:arm64 (15.2.0-12ubuntu1) ... 904s Selecting previously unselected package libgfortran-15-dev:arm64. 904s Preparing to unpack .../041-libgfortran-15-dev_15.2.0-12ubuntu1_arm64.deb ... 904s Unpacking libgfortran-15-dev:arm64 (15.2.0-12ubuntu1) ... 904s Selecting previously unselected package gfortran-15-aarch64-linux-gnu. 904s Preparing to unpack .../042-gfortran-15-aarch64-linux-gnu_15.2.0-12ubuntu1_arm64.deb ... 904s Unpacking gfortran-15-aarch64-linux-gnu (15.2.0-12ubuntu1) ... 904s Selecting previously unselected package gfortran-15. 904s Preparing to unpack .../043-gfortran-15_15.2.0-12ubuntu1_arm64.deb ... 904s Unpacking gfortran-15 (15.2.0-12ubuntu1) ... 904s Selecting previously unselected package gfortran-aarch64-linux-gnu. 904s Preparing to unpack .../044-gfortran-aarch64-linux-gnu_4%3a15.2.0-4ubuntu1_arm64.deb ... 904s Unpacking gfortran-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 904s Selecting previously unselected package gfortran. 904s Preparing to unpack .../045-gfortran_4%3a15.2.0-4ubuntu1_arm64.deb ... 904s Unpacking gfortran (4:15.2.0-4ubuntu1) ... 904s Selecting previously unselected package icu-devtools. 904s Preparing to unpack .../046-icu-devtools_78.2-1ubuntu1_arm64.deb ... 904s Unpacking icu-devtools (78.2-1ubuntu1) ... 904s Selecting previously unselected package javascript-common. 905s Preparing to unpack .../047-javascript-common_12+nmu1build1_all.deb ... 905s Unpacking javascript-common (12+nmu1build1) ... 905s Selecting previously unselected package libio-string-perl. 905s Preparing to unpack .../048-libio-string-perl_1.08-4_all.deb ... 905s Unpacking libio-string-perl (1.08-4) ... 905s Selecting previously unselected package liblatex-tounicode-perl. 905s Preparing to unpack .../049-liblatex-tounicode-perl_1.93-1_all.deb ... 905s Unpacking liblatex-tounicode-perl (1.93-1) ... 905s Selecting previously unselected package libbibtex-parser-perl. 905s Preparing to unpack .../050-libbibtex-parser-perl_1.93+dfsg-1_all.deb ... 905s Unpacking libbibtex-parser-perl (1.93+dfsg-1) ... 905s Selecting previously unselected package libblas3:arm64. 905s Preparing to unpack .../051-libblas3_3.12.1-7ubuntu1_arm64.deb ... 905s Unpacking libblas3:arm64 (3.12.1-7ubuntu1) ... 905s Selecting previously unselected package libblas-dev:arm64. 905s Preparing to unpack .../052-libblas-dev_3.12.1-7ubuntu1_arm64.deb ... 905s Unpacking libblas-dev:arm64 (3.12.1-7ubuntu1) ... 905s Selecting previously unselected package libboost1.90-dev:arm64. 905s Preparing to unpack .../053-libboost1.90-dev_1.90.0-2ubuntu1_arm64.deb ... 905s Unpacking libboost1.90-dev:arm64 (1.90.0-2ubuntu1) ... 909s Selecting previously unselected package libboost-dev:arm64. 909s Preparing to unpack .../054-libboost-dev_1.90.0.0ubuntu3_arm64.deb ... 909s Unpacking libboost-dev:arm64 (1.90.0.0ubuntu3) ... 909s Selecting previously unselected package libbz2-dev:arm64. 909s Preparing to unpack .../055-libbz2-dev_1.0.8-6build2_arm64.deb ... 909s Unpacking libbz2-dev:arm64 (1.0.8-6build2) ... 909s Selecting previously unselected package libpixman-1-0:arm64. 909s Preparing to unpack .../056-libpixman-1-0_0.46.4-1_arm64.deb ... 909s Unpacking libpixman-1-0:arm64 (0.46.4-1) ... 909s Selecting previously unselected package libxcb-render0:arm64. 909s Preparing to unpack .../057-libxcb-render0_1.17.0-2ubuntu1_arm64.deb ... 909s Unpacking libxcb-render0:arm64 (1.17.0-2ubuntu1) ... 909s Selecting previously unselected package libxcb-shm0:arm64. 909s Preparing to unpack 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previously unselected package libjpeg-turbo8:arm64. 909s Preparing to unpack .../069-libjpeg-turbo8_2.1.5-4ubuntu3_arm64.deb ... 909s Unpacking libjpeg-turbo8:arm64 (2.1.5-4ubuntu3) ... 909s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 909s Preparing to unpack .../070-libjpeg-turbo8-dev_2.1.5-4ubuntu3_arm64.deb ... 909s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-4ubuntu3) ... 909s Selecting previously unselected package libjpeg8:arm64. 909s Preparing to unpack .../071-libjpeg8_8c-2ubuntu11_arm64.deb ... 909s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 909s Selecting previously unselected package libjpeg8-dev:arm64. 909s Preparing to unpack .../072-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 909s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 909s Selecting previously unselected package libjpeg-dev:arm64. 909s Preparing to unpack .../073-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 909s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 909s Selecting previously unselected 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package libpotrace0:arm64. 909s Preparing to unpack .../110-libpotrace0_1.16-2build2_arm64.deb ... 909s Unpacking libpotrace0:arm64 (1.16-2build2) ... 909s Selecting previously unselected package libptexenc1:arm64. 909s Preparing to unpack .../111-libptexenc1_2025.20250727.75242+ds-5build1_arm64.deb ... 909s Unpacking libptexenc1:arm64 (2025.20250727.75242+ds-5build1) ... 910s Selecting previously unselected package libreadline-dev:arm64. 910s Preparing to unpack .../112-libreadline-dev_8.3-3_arm64.deb ... 910s Unpacking libreadline-dev:arm64 (8.3-3) ... 910s Selecting previously unselected package libsharpyuv0:arm64. 910s Preparing to unpack .../113-libsharpyuv0_1.5.0-0.1build1_arm64.deb ... 910s Unpacking libsharpyuv0:arm64 (1.5.0-0.1build1) ... 910s Selecting previously unselected package libsm6:arm64. 910s Preparing to unpack .../114-libsm6_2%3a1.2.6-1build1_arm64.deb ... 910s Unpacking libsm6:arm64 (2:1.2.6-1build1) ... 910s Selecting previously unselected package 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unselected package libwebp7:arm64. 910s Preparing to unpack .../120-libwebp7_1.5.0-0.1build1_arm64.deb ... 910s Unpacking libwebp7:arm64 (1.5.0-0.1build1) ... 910s Selecting previously unselected package libtiff6:arm64. 910s Preparing to unpack .../121-libtiff6_4.7.0-3ubuntu3_arm64.deb ... 910s Unpacking libtiff6:arm64 (4.7.0-3ubuntu3) ... 910s Selecting previously unselected package libxft2:arm64. 910s Preparing to unpack .../122-libxft2_2.3.6-1build2_arm64.deb ... 910s Unpacking libxft2:arm64 (2.3.6-1build2) ... 910s Selecting previously unselected package libxss1:arm64. 910s Preparing to unpack .../123-libxss1_1%3a1.2.3-1build4_arm64.deb ... 910s Unpacking libxss1:arm64 (1:1.2.3-1build4) ... 910s Selecting previously unselected package libtk8.6:arm64. 910s Preparing to unpack .../124-libtk8.6_8.6.17-1_arm64.deb ... 910s Unpacking libtk8.6:arm64 (8.6.17-1) ... 910s Selecting previously unselected package libxt6t64:arm64. 910s Preparing to unpack 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package pkgconf-bin. 912s Preparing to unpack .../142-pkgconf-bin_1.8.1-4build1_arm64.deb ... 912s Unpacking pkgconf-bin (1.8.1-4build1) ... 912s Selecting previously unselected package pkgconf:arm64. 912s Preparing to unpack .../143-pkgconf_1.8.1-4build1_arm64.deb ... 912s Unpacking pkgconf:arm64 (1.8.1-4build1) ... 912s Selecting previously unselected package libtirpc-dev:arm64. 912s Preparing to unpack .../144-libtirpc-dev_1.3.6+ds-1_arm64.deb ... 912s Unpacking libtirpc-dev:arm64 (1.3.6+ds-1) ... 912s Selecting previously unselected package r-base-dev. 912s Preparing to unpack .../145-r-base-dev_4.5.2-1ubuntu2_all.deb ... 912s Unpacking r-base-dev (4.5.2-1ubuntu2) ... 912s Selecting previously unselected package pkg-r-autopkgtest. 912s Preparing to unpack .../146-pkg-r-autopkgtest_20250812_all.deb ... 912s Unpacking pkg-r-autopkgtest (20250812) ... 912s Selecting previously unselected package r-bioc-biocgenerics. 912s Preparing to unpack .../147-r-bioc-biocgenerics_0.52.0-2_all.deb 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r-cran-bit64. 913s Preparing to unpack .../153-r-cran-bit64_4.6.0-1-4_arm64.deb ... 913s Unpacking r-cran-bit64 (4.6.0-1-4) ... 913s Selecting previously unselected package r-cran-rlang. 913s Preparing to unpack .../154-r-cran-rlang_1.1.5-3_arm64.deb ... 913s Unpacking r-cran-rlang (1.1.5-3) ... 913s Selecting previously unselected package r-cran-cli. 913s Preparing to unpack .../155-r-cran-cli_3.6.4-1_arm64.deb ... 913s Unpacking r-cran-cli (3.6.4-1) ... 913s Selecting previously unselected package r-cran-glue. 913s Preparing to unpack .../156-r-cran-glue_1.8.0-1_arm64.deb ... 913s Unpacking r-cran-glue (1.8.0-1) ... 913s Selecting previously unselected package r-cran-lifecycle. 913s Preparing to unpack .../157-r-cran-lifecycle_1.0.5+dfsg-1_all.deb ... 913s Unpacking r-cran-lifecycle (1.0.5+dfsg-1) ... 913s Selecting previously unselected package r-cran-vctrs. 913s Preparing to unpack .../158-r-cran-vctrs_0.6.5-1_arm64.deb ... 913s Unpacking r-cran-vctrs (0.6.5-1) ... 913s Selecting previously unselected package r-cran-blob. 913s Preparing to unpack .../159-r-cran-blob_1.3.0-1_all.deb ... 913s Unpacking r-cran-blob (1.3.0-1) ... 913s Selecting previously unselected package r-cran-fastmap. 913s Preparing to unpack .../160-r-cran-fastmap_1.2.0-1_arm64.deb ... 913s Unpacking r-cran-fastmap (1.2.0-1) ... 913s Selecting previously unselected package r-cran-cachem. 913s Preparing to unpack .../161-r-cran-cachem_1.1.0-1_arm64.deb ... 913s Unpacking r-cran-cachem (1.1.0-1) ... 913s Selecting previously unselected package r-cran-memoise. 913s Preparing to unpack .../162-r-cran-memoise_2.0.1-1build1_all.deb ... 913s Unpacking r-cran-memoise (2.0.1-1build1) ... 913s Selecting previously unselected package r-cran-pkgconfig. 913s Preparing to unpack .../163-r-cran-pkgconfig_2.0.3-2build2_all.deb ... 913s Unpacking r-cran-pkgconfig (2.0.3-2build2) ... 913s Selecting previously unselected package r-cran-plogr. 913s Preparing to unpack .../164-r-cran-plogr_0.2.0-3build2_all.deb ... 913s Unpacking r-cran-plogr (0.2.0-3build2) ... 913s Selecting previously unselected package r-cran-cpp11. 914s Preparing to unpack .../165-r-cran-cpp11_0.5.3-1_all.deb ... 914s Unpacking r-cran-cpp11 (0.5.3-1) ... 914s Selecting previously unselected package r-cran-rsqlite. 914s Preparing to unpack .../166-r-cran-rsqlite_2.3.9-1_arm64.deb ... 914s Unpacking r-cran-rsqlite (2.3.9-1) ... 914s Selecting previously unselected package r-cran-curl. 914s Preparing to unpack .../167-r-cran-curl_7.0.0+dfsg-1_arm64.deb ... 914s Unpacking r-cran-curl (7.0.0+dfsg-1) ... 914s Selecting previously unselected package r-cran-jsonlite. 914s Preparing to unpack .../168-r-cran-jsonlite_1.9.1+dfsg-1_arm64.deb ... 914s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ... 914s Selecting previously unselected package r-cran-mime. 914s Preparing to unpack .../169-r-cran-mime_0.12-2_arm64.deb ... 914s Unpacking r-cran-mime (0.12-2) ... 914s Selecting previously unselected package r-cran-sys. 914s Preparing to unpack .../170-r-cran-sys_3.4.3-1_arm64.deb ... 914s Unpacking r-cran-sys (3.4.3-1) ... 914s Selecting previously unselected package r-cran-askpass. 914s Preparing to unpack .../171-r-cran-askpass_1.2.1-1_arm64.deb ... 914s Unpacking r-cran-askpass (1.2.1-1) ... 914s Selecting previously unselected package r-cran-openssl. 914s Preparing to unpack .../172-r-cran-openssl_2.3.2+dfsg-1_arm64.deb ... 914s Unpacking r-cran-openssl (2.3.2+dfsg-1) ... 914s Selecting previously unselected package r-cran-r6. 914s Preparing to unpack .../173-r-cran-r6_2.6.1-1_all.deb ... 914s Unpacking r-cran-r6 (2.6.1-1) ... 914s Selecting previously unselected package r-cran-httr. 914s Preparing to unpack .../174-r-cran-httr_1.4.7+dfsg-1_all.deb ... 914s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 914s Selecting previously unselected package r-cran-png. 914s Preparing to unpack .../175-r-cran-png_0.1-8-1build2_arm64.deb ... 914s Unpacking r-cran-png (0.1-8-1build2) ... 914s Selecting previously unselected package r-bioc-zlibbioc. 914s Preparing to unpack .../176-r-bioc-zlibbioc_1.52.0+dfsg-2_all.deb ... 914s Unpacking r-bioc-zlibbioc (1.52.0+dfsg-2) ... 914s Selecting previously unselected package r-bioc-xvector. 914s Preparing to unpack .../177-r-bioc-xvector_0.46.0-2_arm64.deb ... 914s Unpacking r-bioc-xvector (0.46.0-2) ... 914s Selecting previously unselected package r-bioc-ucsc.utils. 914s Preparing to unpack .../178-r-bioc-ucsc.utils_1.2.0+ds-2_all.deb ... 914s Unpacking r-bioc-ucsc.utils (1.2.0+ds-2) ... 914s Selecting previously unselected package r-bioc-genomeinfodbdata. 914s Preparing to unpack .../179-r-bioc-genomeinfodbdata_1.2.13-2_all.deb ... 914s Unpacking r-bioc-genomeinfodbdata (1.2.13-2) ... 914s Selecting previously unselected package r-bioc-genomeinfodb. 914s Preparing to unpack .../180-r-bioc-genomeinfodb_1.42.3+dfsg-1_all.deb ... 914s Unpacking r-bioc-genomeinfodb (1.42.3+dfsg-1) ... 914s Selecting previously unselected package r-cran-crayon. 914s Preparing to unpack .../181-r-cran-crayon_1.5.3-1_all.deb ... 914s Unpacking r-cran-crayon (1.5.3-1) ... 914s Selecting previously unselected package r-bioc-biostrings. 915s Preparing to unpack .../182-r-bioc-biostrings_2.74.1+dfsg-2_arm64.deb ... 915s Unpacking r-bioc-biostrings (2.74.1+dfsg-2) ... 915s Selecting previously unselected package r-bioc-keggrest. 915s Preparing to unpack .../183-r-bioc-keggrest_1.46.0+dfsg-3_all.deb ... 915s Unpacking r-bioc-keggrest (1.46.0+dfsg-3) ... 915s Selecting previously unselected package r-bioc-annotationdbi. 915s Preparing to unpack .../184-r-bioc-annotationdbi_1.68.0-2_all.deb ... 915s Unpacking r-bioc-annotationdbi (1.68.0-2) ... 915s Selecting previously unselected package r-cran-generics. 915s Preparing to unpack .../185-r-cran-generics_0.1.4-1_all.deb ... 915s Unpacking r-cran-generics (0.1.4-1) ... 915s Selecting previously unselected package r-cran-magrittr. 915s Preparing to unpack .../186-r-cran-magrittr_2.0.3-1_arm64.deb ... 915s Unpacking r-cran-magrittr (2.0.3-1) ... 915s Selecting previously unselected package r-cran-utf8. 915s Preparing to unpack .../187-r-cran-utf8_1.2.4-1_arm64.deb ... 915s Unpacking r-cran-utf8 (1.2.4-1) ... 915s Selecting previously unselected package r-cran-pillar. 915s Preparing to unpack .../188-r-cran-pillar_1.11.1+dfsg-1_all.deb ... 915s Unpacking r-cran-pillar (1.11.1+dfsg-1) ... 915s Selecting previously unselected package r-cran-fansi. 915s Preparing to unpack .../189-r-cran-fansi_1.0.6-2_arm64.deb ... 915s Unpacking r-cran-fansi (1.0.6-2) ... 915s Selecting previously unselected package r-cran-tibble. 915s Preparing to unpack .../190-r-cran-tibble_3.2.1+dfsg-3_arm64.deb ... 915s Unpacking r-cran-tibble (3.2.1+dfsg-3) ... 915s Selecting previously unselected package r-cran-withr. 915s Preparing to unpack .../191-r-cran-withr_3.0.2+dfsg-1_all.deb ... 915s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 915s Selecting previously unselected package r-cran-tidyselect. 915s Preparing to unpack .../192-r-cran-tidyselect_1.2.1+dfsg-1_arm64.deb ... 915s Unpacking r-cran-tidyselect (1.2.1+dfsg-1) ... 915s Selecting previously unselected package r-cran-dplyr. 915s Preparing to unpack .../193-r-cran-dplyr_1.1.4-4_arm64.deb ... 915s Unpacking r-cran-dplyr (1.1.4-4) ... 915s Selecting previously unselected package r-cran-purrr. 915s Preparing to unpack .../194-r-cran-purrr_1.0.4-1_arm64.deb ... 915s Unpacking r-cran-purrr (1.0.4-1) ... 915s Selecting previously unselected package r-cran-stringi. 915s Preparing to unpack .../195-r-cran-stringi_1.8.4-1build2_arm64.deb ... 915s Unpacking r-cran-stringi (1.8.4-1build2) ... 915s Selecting previously unselected package r-cran-stringr. 915s Preparing to unpack .../196-r-cran-stringr_1.5.1-1_all.deb ... 915s Unpacking r-cran-stringr (1.5.1-1) ... 915s Selecting previously unselected package r-cran-tidyr. 915s Preparing to unpack .../197-r-cran-tidyr_1.3.1-1_arm64.deb ... 915s Unpacking r-cran-tidyr (1.3.1-1) ... 916s Selecting previously unselected package r-cran-dbplyr. 916s Preparing to unpack .../198-r-cran-dbplyr_2.5.1+dfsg-1_all.deb ... 916s Unpacking r-cran-dbplyr (2.5.1+dfsg-1) ... 916s Selecting previously unselected package r-cran-filelock. 916s Preparing to unpack .../199-r-cran-filelock_1.0.3-1_arm64.deb ... 916s Unpacking r-cran-filelock (1.0.3-1) ... 916s Selecting previously unselected package r-bioc-biocfilecache. 916s Preparing to unpack .../200-r-bioc-biocfilecache_2.14.0+dfsg-2_all.deb ... 916s Unpacking r-bioc-biocfilecache (2.14.0+dfsg-2) ... 916s Selecting previously unselected package r-bioc-biocio. 916s Preparing to unpack .../201-r-bioc-biocio_1.16.0+dfsg-2_all.deb ... 916s Unpacking r-bioc-biocio (1.16.0+dfsg-2) ... 916s Selecting previously unselected package r-cran-formatr. 916s Preparing to unpack .../202-r-cran-formatr_1.14-2_all.deb ... 916s Unpacking r-cran-formatr (1.14-2) ... 916s Selecting previously unselected package r-cran-lambda.r. 916s Preparing to unpack .../203-r-cran-lambda.r_1.2.4-2build2_all.deb ... 916s Unpacking r-cran-lambda.r (1.2.4-2build2) ... 916s Selecting previously unselected package r-cran-futile.options. 916s Preparing to unpack .../204-r-cran-futile.options_1.0.1-3build2_all.deb ... 916s Unpacking r-cran-futile.options (1.0.1-3build2) ... 916s Selecting previously unselected package r-cran-futile.logger. 916s Preparing to unpack .../205-r-cran-futile.logger_1.4.3-4build2_all.deb ... 916s Unpacking r-cran-futile.logger (1.4.3-4build2) ... 916s Selecting previously unselected package r-cran-snow. 916s Preparing to unpack .../206-r-cran-snow_1%3a0.4.4-2build1_all.deb ... 916s Unpacking r-cran-snow (1:0.4.4-2build1) ... 916s Selecting previously unselected package r-cran-codetools. 916s Preparing to unpack .../207-r-cran-codetools_0.2-20-1build1_all.deb ... 916s Unpacking r-cran-codetools (0.2-20-1build1) ... 916s Selecting previously unselected package r-cran-bh. 916s Preparing to unpack .../208-r-cran-bh_1.84.0-1_all.deb ... 916s Unpacking r-cran-bh (1.84.0-1) ... 916s Selecting previously unselected package r-bioc-biocparallel. 916s Preparing to unpack .../209-r-bioc-biocparallel_1.40.0-2_arm64.deb ... 916s Unpacking r-bioc-biocparallel (1.40.0-2) ... 916s Selecting previously unselected package r-cran-base64enc. 916s Preparing to unpack .../210-r-cran-base64enc_0.1-3-3build1_arm64.deb ... 916s Unpacking r-cran-base64enc (0.1-3-3build1) ... 916s Selecting previously unselected package r-cran-digest. 916s Preparing to unpack .../211-r-cran-digest_0.6.39-1_arm64.deb ... 916s Unpacking r-cran-digest (0.6.39-1) ... 916s Selecting previously unselected package r-cran-htmltools. 916s Preparing to unpack .../212-r-cran-htmltools_0.5.8.1-1_arm64.deb ... 916s Unpacking r-cran-htmltools (0.5.8.1-1) ... 916s Selecting previously unselected package r-cran-evaluate. 916s Preparing to unpack .../213-r-cran-evaluate_1.0.5-1_all.deb ... 916s Unpacking r-cran-evaluate (1.0.5-1) ... 916s Selecting previously unselected package r-cran-xfun. 916s Preparing to unpack .../214-r-cran-xfun_0.55+dfsg-1_arm64.deb ... 916s Unpacking r-cran-xfun (0.55+dfsg-1) ... 916s Selecting previously unselected package r-cran-highr. 916s Preparing to unpack .../215-r-cran-highr_0.11+dfsg-1_all.deb ... 916s Unpacking r-cran-highr (0.11+dfsg-1) ... 916s Selecting previously unselected package r-cran-yaml. 917s Preparing to unpack .../216-r-cran-yaml_2.3.10-1_arm64.deb ... 917s Unpacking r-cran-yaml (2.3.10-1) ... 917s Selecting previously unselected package libjs-mathjax. 917s Preparing to unpack .../217-libjs-mathjax_2.7.9+dfsg-1build1_all.deb ... 917s Unpacking libjs-mathjax (2.7.9+dfsg-1build1) ... 917s Selecting previously unselected package r-cran-knitr. 917s Preparing to unpack .../218-r-cran-knitr_1.51+dfsg-1_all.deb ... 917s Unpacking r-cran-knitr (1.51+dfsg-1) ... 917s Selecting previously unselected package r-cran-jquerylib. 917s Preparing to unpack .../219-r-cran-jquerylib_0.1.4+dfsg-5_all.deb ... 917s Unpacking r-cran-jquerylib (0.1.4+dfsg-5) ... 917s Selecting previously unselected package r-cran-fs. 917s Preparing to unpack .../220-r-cran-fs_1.6.5+dfsg-1_arm64.deb ... 917s Unpacking r-cran-fs (1.6.5+dfsg-1) ... 917s Selecting previously unselected package r-cran-rappdirs. 917s Preparing to unpack .../221-r-cran-rappdirs_0.3.3-1build1_arm64.deb ... 917s Unpacking r-cran-rappdirs (0.3.3-1build1) ... 917s Selecting previously unselected package r-cran-sass. 917s Preparing to unpack .../222-r-cran-sass_0.4.9+dfsg-1_arm64.deb ... 917s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 917s Selecting previously unselected package r-cran-bslib. 917s Preparing to unpack .../223-r-cran-bslib_0.9.0+dfsg-3build1_all.deb ... 917s Unpacking r-cran-bslib (0.9.0+dfsg-3build1) ... 917s Selecting previously unselected package r-cran-fontawesome. 917s Preparing to unpack .../224-r-cran-fontawesome_0.5.3-1_all.deb ... 917s Unpacking r-cran-fontawesome (0.5.3-1) ... 917s Selecting previously unselected package r-cran-tinytex. 917s Preparing to unpack .../225-r-cran-tinytex_0.58-1_all.deb ... 917s Unpacking r-cran-tinytex (0.58-1) ... 918s Selecting previously unselected package libjs-modernizr. 918s Preparing to unpack .../226-libjs-modernizr_3.13.0-0.1build1_all.deb ... 918s Unpacking libjs-modernizr (3.13.0-0.1build1) ... 918s Selecting previously unselected package r-cran-littler. 918s Preparing to unpack .../227-r-cran-littler_0.3.22-1_arm64.deb ... 918s Unpacking r-cran-littler (0.3.22-1) ... 918s Selecting previously unselected package r-cran-pkgkitten. 918s Preparing to unpack .../228-r-cran-pkgkitten_0.2.4-1_all.deb ... 918s Unpacking r-cran-pkgkitten (0.2.4-1) ... 918s Selecting previously unselected package r-cran-rcpp. 918s Preparing to unpack .../229-r-cran-rcpp_1.1.0-1_arm64.deb ... 918s Unpacking r-cran-rcpp (1.1.0-1) ... 918s Selecting previously unselected package r-cran-later. 918s Preparing to unpack .../230-r-cran-later_1.4.1+dfsg-1_arm64.deb ... 918s Unpacking r-cran-later (1.4.1+dfsg-1) ... 918s Selecting previously unselected package r-cran-promises. 918s Preparing to unpack .../231-r-cran-promises_1.3.2+dfsg-1_arm64.deb ... 918s Unpacking r-cran-promises (1.3.2+dfsg-1) ... 918s Selecting previously unselected package r-cran-httpuv. 918s Preparing to unpack .../232-r-cran-httpuv_1.6.15+dfsg-1_arm64.deb ... 918s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 918s Selecting previously unselected package r-cran-xtable. 918s Preparing to unpack .../233-r-cran-xtable_1%3a1.8-4-2build1_all.deb ... 918s Unpacking r-cran-xtable (1:1.8-4-2build1) ... 918s Selecting previously unselected package r-cran-sourcetools. 918s Preparing to unpack .../234-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 918s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 918s Selecting previously unselected package r-cran-commonmark. 918s Preparing to unpack .../235-r-cran-commonmark_1.9.5-1_arm64.deb ... 918s Unpacking r-cran-commonmark (1.9.5-1) ... 918s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 918s Preparing to unpack .../236-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 918s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 918s Selecting previously unselected package r-cran-shiny. 918s Preparing to unpack .../237-r-cran-shiny_1.10.0+dfsg-2_all.deb ... 918s Unpacking r-cran-shiny (1.10.0+dfsg-2) ... 918s Selecting previously unselected package r-cran-rmarkdown. 918s Preparing to unpack .../238-r-cran-rmarkdown_2.30+dfsg-1_all.deb ... 918s Unpacking r-cran-rmarkdown (2.30+dfsg-1) ... 918s Selecting previously unselected package r-cran-bookdown. 918s Preparing to unpack .../239-r-cran-bookdown_0.42+dfsg-1_all.deb ... 918s Unpacking r-cran-bookdown (0.42+dfsg-1) ... 918s Selecting previously unselected package r-cran-biocmanager. 918s Preparing to unpack .../240-r-cran-biocmanager_1.30.25+dfsg-1_all.deb ... 918s Unpacking r-cran-biocmanager (1.30.25+dfsg-1) ... 918s Selecting previously unselected package tex-common. 918s Preparing to unpack .../241-tex-common_6.20_all.deb ... 918s Unpacking tex-common (6.20) ... 919s Selecting previously unselected package t1utils. 919s Preparing to unpack .../242-t1utils_1.41-4build4_arm64.deb ... 919s Unpacking t1utils (1.41-4build4) ... 919s Selecting previously unselected package texlive-binaries. 919s Preparing to unpack .../243-texlive-binaries_2025.20250727.75242+ds-5build1_arm64.deb ... 919s Unpacking texlive-binaries (2025.20250727.75242+ds-5build1) ... 919s Selecting previously unselected package texlive-base. 919s Preparing to unpack .../244-texlive-base_2025.20260124-1_all.deb ... 919s Unpacking texlive-base (2025.20260124-1) ... 920s Selecting previously unselected package texlive-latex-base. 920s Preparing to unpack .../245-texlive-latex-base_2025.20260124-1_all.deb ... 920s Unpacking texlive-latex-base (2025.20260124-1) ... 920s Selecting previously unselected package texlive-bibtex-extra. 920s Preparing to unpack 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(1.2.3-1) ... 923s Selecting previously unselected package r-cran-httr2. 923s Preparing to unpack .../252-r-cran-httr2_1.1.1-2_all.deb ... 923s Unpacking r-cran-httr2 (1.1.1-2) ... 923s Selecting previously unselected package r-cran-xml2. 923s Preparing to unpack .../253-r-cran-xml2_1.4.1-1_arm64.deb ... 923s Unpacking r-cran-xml2 (1.4.1-1) ... 923s Selecting previously unselected package r-bioc-biomart. 923s Preparing to unpack .../254-r-bioc-biomart_2.62.1+dfsg-1_all.deb ... 923s Unpacking r-bioc-biomart (2.62.1+dfsg-1) ... 923s Selecting previously unselected package r-cran-lattice. 923s Preparing to unpack .../255-r-cran-lattice_0.22-9-1_arm64.deb ... 923s Unpacking r-cran-lattice (0.22-9-1) ... 923s Selecting previously unselected package r-cran-matrix. 923s Preparing to unpack .../256-r-cran-matrix_1.7-4-1_arm64.deb ... 923s Unpacking r-cran-matrix (1.7-4-1) ... 923s Selecting previously unselected package r-cran-matrixstats. 923s Preparing to unpack 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libreadline-dev:arm64 (8.3-3) ... 928s Setting up libcairo2:arm64 (1.18.4-3) ... 928s Setting up gcc-15 (15.2.0-12ubuntu1) ... 928s Setting up libstdc++-15-dev:arm64 (15.2.0-12ubuntu1) ... 928s Setting up gfortran-15-aarch64-linux-gnu (15.2.0-12ubuntu1) ... 928s Setting up g++-15-aarch64-linux-gnu (15.2.0-12ubuntu1) ... 928s Setting up libxt6t64:arm64 (1:1.2.1-1.3) ... 928s Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu2) ... 928s Setting up libboost1.90-dev:arm64 (1.90.0-2ubuntu1) ... 928s Setting up libboost-dev:arm64 (1.90.0.0ubuntu3) ... 928s Setting up libpangoft2-1.0-0:arm64 (1.57.0-1) ... 928s Setting up libjpeg8-dev:arm64 (8c-2ubuntu11) ... 928s Setting up g++-15 (15.2.0-12ubuntu1) ... 928s Setting up gfortran-15 (15.2.0-12ubuntu1) ... 928s Setting up libpangocairo-1.0-0:arm64 (1.57.0-1) ... 928s Setting up gcc-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 928s Setting up libxmu6:arm64 (2:1.1.3-4) ... 928s Setting up libpng-dev:arm64 (1.6.54-1) ... 928s Setting up libjpeg-dev:arm64 (8c-2ubuntu11) ... 928s Setting up libxaw7:arm64 (2:1.0.16-1build1) ... 928s Setting up gcc (4:15.2.0-4ubuntu1) ... 928s Setting up r-base-core (4.5.2-1ubuntu2) ... 929s Creating config file /etc/R/Renviron with new version 929s Setting up r-cran-crayon (1.5.3-1) ... 929s Setting up r-cran-sourcetools (0.1.7-1-1) ... 929s Setting up r-cran-futile.options (1.0.1-3build2) ... 929s Setting up r-cran-lattice (0.22-9-1) ... 929s Setting up r-cran-formatr (1.14-2) ... 929s Setting up r-cran-xml (3.99-0.20-1) ... 929s Setting up texlive-binaries (2025.20250727.75242+ds-5build1) ... 929s update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode 929s update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode 929s Setting up g++-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 929s Setting up gfortran-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 929s Setting up r-cran-commonmark (1.9.5-1) ... 929s Setting up r-cran-rjson (0.2.23-1) ... 929s Setting up r-cran-r6 (2.6.1-1) ... 929s Setting up r-cran-pkgkitten (0.2.4-1) ... 929s Setting up r-cran-jpeg (0.1-10-1) ... 929s Setting up texlive-base (2025.20260124-1) ... 929s tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps 929s tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg 930s tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper 930s tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex 930s Setting up r-cran-magrittr (2.0.3-1) ... 930s Setting up r-cran-rappdirs (0.3.3-1build1) ... 930s Setting up r-cran-filelock (1.0.3-1) ... 930s Setting up r-bioc-genomeinfodbdata (1.2.13-2) ... 930s Setting up r-cran-littler (0.3.22-1) ... 930s Setting up r-cran-bh (1.84.0-1) ... 930s Setting up r-cran-fs (1.6.5+dfsg-1) ... 930s Setting up r-cran-rcpp (1.1.0-1) ... 930s Setting up r-cran-curl (7.0.0+dfsg-1) ... 930s Setting up r-cran-codetools (0.2-20-1build1) ... 930s Setting up r-bioc-biocgenerics (0.52.0-2) ... 930s Setting up r-cran-rlang (1.1.5-3) ... 930s Setting up r-cran-matrixstats (1.5.0-1) ... 930s Setting up r-bioc-matrixgenerics (1.18.1-1) ... 930s Setting up r-cran-xfun (0.55+dfsg-1) ... 930s Setting up r-cran-sys (3.4.3-1) ... 930s Setting up r-cran-plogr (0.2.0-3build2) ... 930s Setting up r-cran-withr (3.0.2+dfsg-1) ... 930s Setting up r-cran-mime (0.12-2) ... 930s Setting up r-cran-generics (0.1.4-1) ... 930s Setting up r-cran-base64enc (0.1-3-3build1) ... 930s Setting up r-cran-abind (1.4-8-1build1) ... 930s Setting up r-cran-digest (0.6.39-1) ... 930s Setting up r-cran-yaml (2.3.10-1) ... 930s Setting up r-cran-lambda.r (1.2.4-2build2) ... 930s Setting up r-cran-evaluate (1.0.5-1) ... 930s Setting up r-cran-dbi (1.2.3-1build1) ... 930s Setting up r-cran-highr (0.11+dfsg-1) ... 930s Setting up r-cran-prettyunits (1.2.0-1) ... 930s Setting up r-cran-fansi (1.0.6-2) ... 930s Setting up r-cran-mass (7.3-65-1) ... 930s Setting up r-cran-snow (1:0.4.4-2build1) ... 930s Setting up r-cran-glue (1.8.0-1) ... 930s Setting up r-cran-bit (4.6.0+dfsg-1) ... 930s Setting up r-cran-xtable (1:1.8-4-2build1) ... 930s Setting up r-cran-cli (3.6.4-1) ... 930s Setting up gfortran (4:15.2.0-4ubuntu1) ... 930s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 930s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 930s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 930s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 930s Setting up r-cran-lifecycle (1.0.5+dfsg-1) ... 930s Setting up r-cran-bitops (1.0-9-1) ... 930s Setting up r-bioc-biocversion (3.20.0-2) ... 930s Setting up r-cran-bit64 (4.6.0-1-4) ... 930s Setting up r-cran-biocmanager (1.30.25+dfsg-1) ... 930s Setting up r-bioc-zlibbioc (1.52.0+dfsg-2) ... 930s Setting up r-cran-deldir (2.0-4-1build1) ... 930s Setting up r-cran-askpass (1.2.1-1) ... 930s Setting up r-cran-fastmap (1.2.0-1) ... 930s Setting up r-cran-png (0.1-8-1build2) ... 930s Setting up r-bioc-biobase (2.66.0-2) ... 930s Setting up r-cran-jsonlite (1.9.1+dfsg-1) ... 930s Setting up r-cran-pkgconfig (2.0.3-2build2) ... 930s Setting up r-cran-utf8 (1.2.4-1) ... 930s Setting up r-cran-stringi (1.8.4-1build2) ... 930s Setting up texlive-latex-base (2025.20260124-1) ... 930s Setting up r-cran-hwriter (1.3.2.1-1) ... 930s Setting up r-cran-cpp11 (0.5.3-1) ... 930s Setting up r-cran-rcolorbrewer (1.1-3-1build2) ... 930s Setting up r-bioc-s4vectors (0.44.0+dfsg-2) ... 930s Setting up r-cran-runit (0.4.33.1-1) ... 930s Setting up r-cran-futile.logger (1.4.3-4build2) ... 930s Setting up r-cran-later (1.4.1+dfsg-1) ... 930s Setting up r-cran-matrix (1.7-4-1) ... 930s Setting up r-cran-htmltools (0.5.8.1-1) ... 930s Setting up r-cran-tinytex (0.58-1) ... 930s Setting up r-cran-knitr (1.51+dfsg-1) ... 930s Setting up g++ (4:15.2.0-4ubuntu1) ... 930s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 930s Setting up r-cran-cachem (1.1.0-1) ... 930s Setting up r-cran-sass (0.4.9+dfsg-1) ... 930s Setting up build-essential (12.12ubuntu2) ... 930s Setting up r-bioc-iranges (2.40.1-3) ... 930s Setting up r-cran-rcurl (1.98-1.16+dfsg-1) ... 930s Setting up r-cran-restfulr (0.0.15-1) ... 930s Setting up r-cran-vctrs (0.6.5-1) ... 930s Setting up r-cran-rcppeigen (0.3.4.0.2-1) ... 930s Setting up r-cran-pillar (1.11.1+dfsg-1) ... 930s Setting up r-cran-openssl (2.3.2+dfsg-1) ... 930s Setting up r-base-dev (4.5.2-1ubuntu2) ... 930s Setting up r-bioc-s4arrays (1.6.0+dfsg-2) ... 930s Setting up r-cran-stringr (1.5.1-1) ... 930s Setting up r-bioc-biocparallel (1.40.0-2) ... 930s Setting up r-bioc-rhtslib (3.2.0+dfsg-2) ... 930s Setting up r-cran-xml2 (1.4.1-1) ... 930s Setting up r-cran-tibble (3.2.1+dfsg-3) ... 930s Setting up r-cran-fontawesome (0.5.3-1) ... 930s Setting up r-bioc-biocio (1.16.0+dfsg-2) ... 930s Setting up r-cran-jquerylib (0.1.4+dfsg-5) ... 930s Setting up r-cran-tidyselect (1.2.1+dfsg-1) ... 930s Setting up texlive-bibtex-extra (2025.20260124-1) ... 930s Setting up r-cran-interp (1.1-6-1) ... 930s Setting up r-cran-httr2 (1.1.1-2) ... 930s Setting up r-cran-httr (1.4.7+dfsg-1) ... 930s Setting up r-cran-hms (1.1.4-1) ... 930s Setting up r-cran-memoise (2.0.1-1build1) ... 930s Setting up r-cran-promises (1.3.2+dfsg-1) ... 930s Setting up r-cran-purrr (1.0.4-1) ... 930s Setting up r-cran-blob (1.3.0-1) ... 930s Setting up pkg-r-autopkgtest (20250812) ... 930s Setting up r-bioc-xvector (0.46.0-2) ... 930s Setting up r-cran-dplyr (1.1.4-4) ... 930s Setting up r-cran-rsqlite (2.3.9-1) ... 930s Setting up r-cran-progress (1.2.3-1) ... 930s Setting up r-bioc-ucsc.utils (1.2.0+ds-2) ... 930s Setting up r-bioc-sparsearray (1.6.2+dfsg-2) ... 930s Setting up r-cran-httpuv (1.6.15+dfsg-1) ... 930s Setting up r-cran-latticeextra (0.6-31-1) ... 930s Setting up r-bioc-genomeinfodb (1.42.3+dfsg-1) ... 930s Setting up r-cran-bslib (0.9.0+dfsg-3build1) ... 930s Setting up r-cran-tidyr (1.3.1-1) ... 930s Setting up r-cran-dbplyr (2.5.1+dfsg-1) ... 930s Setting up r-bioc-delayedarray (0.32.0+dfsg-2) ... 930s Setting up r-bioc-biocfilecache (2.14.0+dfsg-2) ... 930s Setting up r-bioc-genomicranges (1.58.0+dfsg-2) ... 930s Setting up r-bioc-biostrings (2.74.1+dfsg-2) ... 930s Setting up r-cran-shiny (1.10.0+dfsg-2) ... 930s Setting up r-cran-rmarkdown (2.30+dfsg-1) ... 930s Setting up r-bioc-rsamtools (2.22.0+dfsg-2) ... 930s Setting up r-cran-bookdown (0.42+dfsg-1) ... 930s Setting up r-bioc-summarizedexperiment (1.36.0+dfsg-2) ... 930s Setting up r-bioc-pwalign (1.2.0-3) ... 930s Setting up r-bioc-keggrest (1.46.0+dfsg-3) ... 930s Setting up r-bioc-annotationdbi (1.68.0-2) ... 930s Setting up r-bioc-biomart (2.62.1+dfsg-1) ... 930s Setting up r-bioc-biocstyle (2.34.0+dfsg-1) ... 930s Setting up r-bioc-genomicalignments (1.42.0-2) ... 930s Setting up r-bioc-rtracklayer (1.66.0-3) ... 930s Setting up r-bioc-genomicfeatures (1.58.0+dfsg-2) ... 930s Setting up r-bioc-shortread (1.64.0-3) ... 930s Processing triggers for libc-bin (2.42-2ubuntu4) ... 930s Processing triggers for man-db (2.13.1-1build1) ... 931s Processing triggers for install-info (7.2-5) ... 931s Processing triggers for tex-common (6.20) ... 932s Running updmap-sys. This may take some time... done. 932s Running mktexlsr /var/lib/texmf ... done. 932s Building format(s) --all. 958s This may take some time... done. 959s autopkgtest [23:02:42]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 959s autopkgtest [23:02:42]: test pkg-r-autopkgtest: [----------------------- 959s Test: Try to load the R library ShortRead 960s 960s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 960s Copyright (C) 2025 The R Foundation for Statistical Computing 960s Platform: aarch64-unknown-linux-gnu 960s 960s R is free software and comes with ABSOLUTELY NO WARRANTY. 960s You are welcome to redistribute it under certain conditions. 960s Type 'license()' or 'licence()' for distribution details. 960s 960s R is a collaborative project with many contributors. 960s Type 'contributors()' for more information and 960s 'citation()' on how to cite R or R packages in publications. 960s 960s Type 'demo()' for some demos, 'help()' for on-line help, or 960s 'help.start()' for an HTML browser interface to help. 960s Type 'q()' to quit R. 960s 960s > library('ShortRead') 960s Loading required package: BiocGenerics 960s 960s Attaching package: ‘BiocGenerics’ 960s 960s The following objects are masked from ‘package:stats’: 960s 960s IQR, mad, sd, var, xtabs 960s 960s The following objects are masked from ‘package:base’: 960s 960s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 960s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 960s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 960s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 960s Position, rank, rbind, Reduce, rownames, sapply, saveRDS, setdiff, 960s table, tapply, union, unique, unsplit, which.max, which.min 960s 960s Loading required package: BiocParallel 960s Loading required package: Biostrings 960s Loading required package: S4Vectors 960s Loading required package: stats4 960s 960s Attaching package: ‘S4Vectors’ 960s 960s The following object is masked from ‘package:utils’: 960s 960s findMatches 960s 960s The following objects are masked from ‘package:base’: 960s 960s expand.grid, I, unname 960s 960s Loading required package: IRanges 961s Loading required package: XVector 961s Loading required package: GenomeInfoDb 962s 962s Attaching package: ‘Biostrings’ 962s 962s The following object is masked from ‘package:base’: 962s 962s strsplit 962s 962s Loading required package: Rsamtools 962s Loading required package: GenomicRanges 962s Loading required package: GenomicAlignments 962s Loading required package: SummarizedExperiment 962s Loading required package: MatrixGenerics 962s Loading required package: matrixStats 963s 963s Attaching package: ‘MatrixGenerics’ 963s 963s The following objects are masked from ‘package:matrixStats’: 963s 963s colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse, 963s colCounts, colCummaxs, colCummins, colCumprods, colCumsums, 963s colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs, 963s colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats, 963s colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds, 963s colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads, 963s colWeightedMeans, colWeightedMedians, colWeightedSds, 963s colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet, 963s rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods, 963s rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps, 963s rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins, 963s rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks, 963s rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars, 963s rowWeightedMads, rowWeightedMeans, rowWeightedMedians, 963s rowWeightedSds, rowWeightedVars 963s 963s Loading required package: Biobase 963s Welcome to Bioconductor 963s 963s Vignettes contain introductory material; view with 963s 'browseVignettes()'. To cite Bioconductor, see 963s 'citation("Biobase")', and for packages 'citation("pkgname")'. 963s 963s 963s Attaching package: ‘Biobase’ 963s 963s The following object is masked from ‘package:MatrixGenerics’: 963s 963s rowMedians 963s 963s The following objects are masked from ‘package:matrixStats’: 963s 963s anyMissing, rowMedians 963s 967s > 967s Test: Run tests for ShortRead 967s Start: ShortRead_unit_tests.R 967s 967s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 967s Copyright (C) 2025 The R Foundation for Statistical Computing 967s Platform: aarch64-unknown-linux-gnu 967s 967s R is free software and comes with ABSOLUTELY NO WARRANTY. 967s You are welcome to redistribute it under certain conditions. 967s Type 'license()' or 'licence()' for distribution details. 967s 967s R is a collaborative project with many contributors. 967s Type 'contributors()' for more information and 967s 'citation()' on how to cite R or R packages in publications. 967s 967s Type 'demo()' for some demos, 'help()' for on-line help, or 967s 'help.start()' for an HTML browser interface to help. 967s Type 'q()' to quit R. 967s 968s > BiocGenerics:::testPackage("ShortRead") 968s 968s Attaching package: ‘BiocGenerics’ 968s 968s The following objects are masked from ‘package:stats’: 968s 968s IQR, mad, sd, var, xtabs 968s 968s The following objects are masked from ‘package:base’: 968s 968s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 968s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 968s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 968s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 968s Position, rank, rbind, Reduce, rownames, sapply, saveRDS, setdiff, 968s table, tapply, union, unique, unsplit, which.max, which.min 968s 968s 968s Attaching package: ‘S4Vectors’ 968s 968s The following object is masked from ‘package:utils’: 968s 968s findMatches 968s 968s The following objects are masked from ‘package:base’: 968s 968s expand.grid, I, unname 968s 969s 969s Attaching package: ‘Biostrings’ 969s 969s The following object is masked from ‘package:base’: 969s 969s strsplit 969s 971s 971s Attaching package: ‘MatrixGenerics’ 971s 971s The following objects are masked from ‘package:matrixStats’: 971s 971s colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse, 971s colCounts, colCummaxs, colCummins, colCumprods, colCumsums, 971s colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs, 971s colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats, 971s colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds, 971s colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads, 971s colWeightedMeans, colWeightedMedians, colWeightedSds, 971s colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet, 971s rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods, 971s rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps, 971s rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins, 971s rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks, 971s rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars, 971s rowWeightedMads, rowWeightedMeans, rowWeightedMedians, 971s rowWeightedSds, rowWeightedVars 971s 971s Welcome to Bioconductor 971s 971s Vignettes contain introductory material; view with 971s 'browseVignettes()'. To cite Bioconductor, see 971s 'citation("Biobase")', and for packages 'citation("pkgname")'. 971s 971s 971s Attaching package: ‘Biobase’ 971s 971s The following object is masked from ‘package:MatrixGenerics’: 971s 971s rowMedians 971s 971s The following objects are masked from ‘package:matrixStats’: 971s 971s anyMissing, rowMedians 971s 980s 980s 980s RUNIT TEST PROTOCOL -- Mon Feb 9 23:03:03 2026 980s *********************************************** 980s Number of test functions: 103 980s Number of errors: 0 980s Number of failures: 0 980s 980s 980s 1 Test Suite : 980s ShortRead RUnit Tests - 103 test functions, 0 errors, 0 failures 980s Number of test functions: 103 980s Number of errors: 0 980s Number of failures: 0 980s > 980s Warning message: 980s In for (i in seq_len(n)) { : 980s closing unused connection 3 (/tmp/RtmpthlCIj/file182a18937f6e) 981s autopkgtest [23:03:04]: test pkg-r-autopkgtest: -----------------------] 981s pkg-r-autopkgtest PASS 981s autopkgtest [23:03:04]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 982s autopkgtest [23:03:05]: @@@@@@@@@@@@@@@@@@@@ summary 982s pkg-r-autopkgtest PASS