0s autopkgtest [23:20:27]: starting date and time: 2026-02-09 23:20:27+0000 0s autopkgtest [23:20:27]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [23:20:27]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.duohunua/out --timeout-copy=6000 --needs-internet=try --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-cran-ggplot2 --apt-upgrade r-bioc-phyloseq --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-cran-ggplot2/4.0.2+dfsg-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-arm64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@sto01-arm64-16.secgroup --name adt-resolute-arm64-r-bioc-phyloseq-20260209-232027-juju-7f2275-prod-proposed-migration-environment-2-02d2f984-1318-4fc3-9c92-24229b131bdc --image adt/ubuntu-resolute-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-autopkgtest-workers-arm64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 4s Creating nova instance adt-resolute-arm64-r-bioc-phyloseq-20260209-232027-juju-7f2275-prod-proposed-migration-environment-2-02d2f984-1318-4fc3-9c92-24229b131bdc from image adt/ubuntu-resolute-arm64-server-20260209.img (UUID 793037ca-75af-461b-82de-f8081300b2e3)... 124s autopkgtest [23:22:31]: testbed dpkg architecture: arm64 124s autopkgtest [23:22:31]: testbed apt version: 3.1.15 125s autopkgtest [23:22:32]: @@@@@@@@@@@@@@@@@@@@ test bed setup 125s autopkgtest [23:22:32]: testbed release detected to be: None 125s autopkgtest [23:22:32]: updating testbed package index (apt update) 126s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 126s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 126s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 126s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 126s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [176 kB] 126s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1645 kB] 130s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [29.4 kB] 130s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 Packages [246 kB] 130s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 c-n-f Metadata [6216 B] 130s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 c-n-f Metadata [304 B] 130s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 Packages [1580 kB] 133s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 c-n-f Metadata [32.0 kB] 133s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 Packages [21.7 kB] 133s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 c-n-f Metadata [688 B] 134s Fetched 3862 kB in 7s (523 kB/s) 135s Reading package lists... 136s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 136s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 136s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 136s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 137s Reading package lists... 137s Reading package lists... 137s Building dependency tree... 137s Reading state information... 137s Calculating upgrade... 138s The following packages will be upgraded: 138s cryptsetup-bin dracut-install iproute2 iptables libcryptsetup12 libip4tc2 138s libip6tc2 libxtables12 wget 138s 9 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 138s Need to get 2534 kB of archives. 138s After this operation, 18.4 kB of additional disk space will be used. 138s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 iptables arm64 1.8.11-2ubuntu3 [386 kB] 138s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 libip4tc2 arm64 1.8.11-2ubuntu3 [24.3 kB] 138s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 libip6tc2 arm64 1.8.11-2ubuntu3 [24.7 kB] 138s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 libxtables12 arm64 1.8.11-2ubuntu3 [36.7 kB] 138s Get:5 http://ftpmaster.internal/ubuntu resolute/main arm64 iproute2 arm64 6.18.0-1ubuntu1 [1171 kB] 140s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 libcryptsetup12 arm64 2:2.8.0-1ubuntu3 [274 kB] 140s Get:7 http://ftpmaster.internal/ubuntu resolute/main arm64 wget arm64 1.25.0-2ubuntu4 [344 kB] 140s Get:8 http://ftpmaster.internal/ubuntu resolute/main arm64 cryptsetup-bin arm64 2:2.8.0-1ubuntu3 [227 kB] 140s Get:9 http://ftpmaster.internal/ubuntu resolute/main arm64 dracut-install arm64 109-11ubuntu1 [45.3 kB] 141s dpkg-preconfigure: unable to re-open stdin: No such file or directory 141s Fetched 2534 kB in 3s (974 kB/s) 141s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 136597 files and directories currently installed.) 141s Preparing to unpack .../0-iptables_1.8.11-2ubuntu3_arm64.deb ... 141s Unpacking iptables (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 141s Preparing to unpack .../1-libip4tc2_1.8.11-2ubuntu3_arm64.deb ... 141s Unpacking libip4tc2:arm64 (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 141s Preparing to unpack .../2-libip6tc2_1.8.11-2ubuntu3_arm64.deb ... 141s Unpacking libip6tc2:arm64 (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 141s Preparing to unpack .../3-libxtables12_1.8.11-2ubuntu3_arm64.deb ... 141s Unpacking libxtables12:arm64 (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 141s Preparing to unpack .../4-iproute2_6.18.0-1ubuntu1_arm64.deb ... 142s Unpacking iproute2 (6.18.0-1ubuntu1) over (6.16.0-1ubuntu3) ... 142s Preparing to unpack .../5-libcryptsetup12_2%3a2.8.0-1ubuntu3_arm64.deb ... 142s Unpacking libcryptsetup12:arm64 (2:2.8.0-1ubuntu3) over (2:2.8.0-1ubuntu2) ... 142s Preparing to unpack .../6-wget_1.25.0-2ubuntu4_arm64.deb ... 142s Unpacking wget (1.25.0-2ubuntu4) over (1.25.0-2ubuntu3) ... 142s Preparing to unpack .../7-cryptsetup-bin_2%3a2.8.0-1ubuntu3_arm64.deb ... 142s Unpacking cryptsetup-bin (2:2.8.0-1ubuntu3) over (2:2.8.0-1ubuntu2) ... 142s Preparing to unpack .../8-dracut-install_109-11ubuntu1_arm64.deb ... 142s Unpacking dracut-install (109-11ubuntu1) over (109-9ubuntu1) ... 142s Setting up libip4tc2:arm64 (1.8.11-2ubuntu3) ... 142s Setting up wget (1.25.0-2ubuntu4) ... 142s Setting up libip6tc2:arm64 (1.8.11-2ubuntu3) ... 142s Setting up libxtables12:arm64 (1.8.11-2ubuntu3) ... 142s Setting up dracut-install (109-11ubuntu1) ... 142s Setting up libcryptsetup12:arm64 (2:2.8.0-1ubuntu3) ... 142s Setting up cryptsetup-bin (2:2.8.0-1ubuntu3) ... 142s Setting up iptables (1.8.11-2ubuntu3) ... 142s Setting up iproute2 (6.18.0-1ubuntu1) ... 142s Processing triggers for man-db (2.13.1-1build1) ... 143s Processing triggers for install-info (7.2-5) ... 144s Processing triggers for libc-bin (2.42-2ubuntu4) ... 144s autopkgtest [23:22:51]: upgrading testbed (apt dist-upgrade and autopurge) 144s Reading package lists... 144s Building dependency tree... 144s Reading state information... 144s Calculating upgrade... 145s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 145s Reading package lists... 145s Building dependency tree... 145s Reading state information... 145s Solving dependencies... 146s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 148s autopkgtest [23:22:55]: testbed running kernel: Linux 6.19.0-3-generic #3-Ubuntu SMP PREEMPT_DYNAMIC Fri Jan 23 19:46:27 UTC 2026 149s autopkgtest [23:22:56]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-phyloseq 152s Get:1 http://ftpmaster.internal/ubuntu resolute/universe r-bioc-phyloseq 1.50.0+dfsg-2 (dsc) [2370 B] 152s Get:2 http://ftpmaster.internal/ubuntu resolute/universe r-bioc-phyloseq 1.50.0+dfsg-2 (tar) [1607 kB] 152s Get:3 http://ftpmaster.internal/ubuntu resolute/universe r-bioc-phyloseq 1.50.0+dfsg-2 (diff) [14.7 kB] 153s gpgv: Signature made Sun Jan 12 19:19:58 2025 UTC 153s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 153s gpgv: issuer "crusoe@debian.org" 153s gpgv: Can't check signature: No public key 153s dpkg-source: warning: cannot verify inline signature for ./r-bioc-phyloseq_1.50.0+dfsg-2.dsc: no acceptable signature found 153s autopkgtest [23:23:00]: testing package r-bioc-phyloseq version 1.50.0+dfsg-2 153s autopkgtest [23:23:00]: build not needed 156s autopkgtest [23:23:03]: test pkg-r-autopkgtest: preparing testbed 156s Reading package lists... 156s Building dependency tree... 156s Reading state information... 156s Solving dependencies... 157s The following NEW packages will be installed: 157s build-essential cpp cpp-15 cpp-15-aarch64-linux-gnu cpp-aarch64-linux-gnu 157s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 157s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 157s g++ g++-15 g++-15-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-15 157s gcc-15-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-15 157s gfortran-15-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 157s javascript-common libamd3 libasan8 libbibtex-parser-perl libblas-dev 157s libblas3 libboost-dev libboost1.90-dev libbz2-dev libc-dev-bin libc6-dev 157s libcairo2 libcc1-0 libcolamd3 libcrypt-dev libdatrie1 libdeflate-dev 157s libdeflate0 libfontconfig1 libgcc-15-dev libgfortran-15-dev libgfortran5 157s libglpk40 libgomp1 libgraphite2-3 libharfbuzz0b libhwasan0 libice6 157s libicu-dev libio-string-perl libisl23 libitm1 libjbig0 libjpeg-dev 157s libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap 157s libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery 157s libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json 157s libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr 157s libjs-popper.js libjs-prettify libjs-sifter.js 157s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 157s liblatex-tounicode-perl liblerc4 liblsan0 libltdl7 liblua5.4-0 liblzma-dev 157s libmpc3 libmpfi0 libncurses-dev libpango-1.0-0 libpangocairo-1.0-0 157s libpangoft2-1.0-0 libpaper-utils libpaper2 libpcre2-16-0 libpcre2-32-0 157s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 157s libpotrace0 libptexenc1 libreadline-dev libsharpyuv0 libsm6 libstdc++-15-dev 157s libsuitesparseconfig7 libsynctex2 libtcl8.6 libteckit0 libtexlua53-5 157s libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 157s libwebp7 libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 157s libxrender1 libxss1 libxt6t64 libzstd-dev libzzip-0-13t64 linux-libc-dev 157s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 157s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev r-bioc-annotate 157s r-bioc-annotationdbi r-bioc-biobase r-bioc-biocgenerics r-bioc-biocparallel 157s r-bioc-biocstyle r-bioc-biocversion r-bioc-biomformat r-bioc-biostrings 157s r-bioc-delayedarray r-bioc-deseq2 r-bioc-genefilter r-bioc-genomeinfodb 157s r-bioc-genomeinfodbdata r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest 157s r-bioc-limma r-bioc-matrixgenerics r-bioc-metagenomeseq r-bioc-multtest 157s r-bioc-phyloseq r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray 157s r-bioc-summarizedexperiment r-bioc-ucsc.utils r-bioc-wrench r-bioc-xvector 157s r-bioc-zlibbioc r-cran-abind r-cran-ade4 r-cran-ape r-cran-askpass 157s r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit r-cran-bit64 157s r-cran-bitops r-cran-blob r-cran-bookdown r-cran-brio r-cran-bslib 157s r-cran-cachem r-cran-callr r-cran-catools r-cran-cli r-cran-cluster 157s r-cran-codetools r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-curl 157s r-cran-data.table r-cran-dbi r-cran-desc r-cran-diffobj r-cran-digest 157s r-cran-evaluate r-cran-farver r-cran-fastmap r-cran-fontawesome 157s r-cran-foreach r-cran-formatr r-cran-fs r-cran-futile.logger 157s r-cran-futile.options r-cran-gdata r-cran-ggplot2 r-cran-glmnet r-cran-glue 157s r-cran-gplots r-cran-gtable r-cran-gtools r-cran-highr r-cran-htmltools 157s r-cran-httpuv r-cran-httr r-cran-igraph r-cran-isoband r-cran-iterators 157s r-cran-jquerylib r-cran-jsonlite r-cran-kernsmooth r-cran-knitr 157s r-cran-labeling r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lifecycle 157s r-cran-littler r-cran-locfit r-cran-magrittr r-cran-mass r-cran-matrix 157s r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-mime r-cran-nlme 157s r-cran-openssl r-cran-permute r-cran-pixmap r-cran-pkgbuild r-cran-pkgconfig 157s r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-plyr r-cran-png 157s r-cran-praise r-cran-processx r-cran-promises r-cran-ps r-cran-r6 157s r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcpparmadillo 157s r-cran-rcppeigen r-cran-reshape2 r-cran-rlang r-cran-rmarkdown 157s r-cran-rprojroot r-cran-rsqlite r-cran-s7 r-cran-sass r-cran-scales 157s r-cran-shape r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-sp 157s r-cran-statmod r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys 157s r-cran-testthat r-cran-tinytex r-cran-vctrs r-cran-vegan r-cran-viridislite 157s r-cran-waldo r-cran-withr r-cran-xfun r-cran-xml r-cran-xtable r-cran-yaml 157s rpcsvc-proto t1utils tex-common texlive-base texlive-bibtex-extra 157s texlive-binaries texlive-latex-base unzip x11-common xdg-utils zip 157s zlib1g-dev 157s 0 upgraded, 311 newly installed, 0 to remove and 0 not upgraded. 157s Need to get 480 MB of archives. 157s After this operation, 1464 MB of additional disk space will be used. 157s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 libc-dev-bin arm64 2.42-2ubuntu4 [22.5 kB] 157s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 linux-libc-dev arm64 6.19.0-3.3 [1819 kB] 162s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 libcrypt-dev arm64 1:4.5.1-1 [123 kB] 162s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 rpcsvc-proto arm64 1.4.3-1build1 [65.6 kB] 162s Get:5 http://ftpmaster.internal/ubuntu resolute/main arm64 libc6-dev arm64 2.42-2ubuntu4 [1765 kB] 168s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 libisl23 arm64 0.27-1build1 [676 kB] 169s Get:7 http://ftpmaster.internal/ubuntu resolute/main arm64 libmpc3 arm64 1.3.1-2 [55.6 kB] 169s Get:8 http://ftpmaster.internal/ubuntu resolute/main arm64 cpp-15-aarch64-linux-gnu arm64 15.2.0-12ubuntu1 [11.7 MB] 191s Get:9 http://ftpmaster.internal/ubuntu resolute/main arm64 cpp-15 arm64 15.2.0-12ubuntu1 [1030 B] 191s Get:10 http://ftpmaster.internal/ubuntu resolute/main arm64 cpp-aarch64-linux-gnu arm64 4:15.2.0-4ubuntu1 [5736 B] 191s Get:11 http://ftpmaster.internal/ubuntu resolute/main arm64 cpp arm64 4:15.2.0-4ubuntu1 [22.4 kB] 191s Get:12 http://ftpmaster.internal/ubuntu resolute/main arm64 libcc1-0 arm64 15.2.0-12ubuntu1 [49.0 kB] 191s Get:13 http://ftpmaster.internal/ubuntu resolute/main arm64 libgomp1 arm64 15.2.0-12ubuntu1 [147 kB] 191s Get:14 http://ftpmaster.internal/ubuntu resolute/main arm64 libitm1 arm64 15.2.0-12ubuntu1 [27.8 kB] 191s Get:15 http://ftpmaster.internal/ubuntu resolute/main arm64 libasan8 arm64 15.2.0-12ubuntu1 [2920 kB] 198s Get:16 http://ftpmaster.internal/ubuntu resolute/main arm64 liblsan0 arm64 15.2.0-12ubuntu1 [1316 kB] 200s Get:17 http://ftpmaster.internal/ubuntu resolute/main arm64 libtsan2 arm64 15.2.0-12ubuntu1 [2688 kB] 204s Get:18 http://ftpmaster.internal/ubuntu resolute/main arm64 libubsan1 arm64 15.2.0-12ubuntu1 [1175 kB] 206s Get:19 http://ftpmaster.internal/ubuntu resolute/main arm64 libhwasan0 arm64 15.2.0-12ubuntu1 [1638 kB] 209s Get:20 http://ftpmaster.internal/ubuntu resolute/main arm64 libgcc-15-dev arm64 15.2.0-12ubuntu1 [2600 kB] 213s Get:21 http://ftpmaster.internal/ubuntu resolute/main arm64 gcc-15-aarch64-linux-gnu arm64 15.2.0-12ubuntu1 [23.1 MB] 251s Get:22 http://ftpmaster.internal/ubuntu resolute/main arm64 gcc-15 arm64 15.2.0-12ubuntu1 [519 kB] 251s Get:23 http://ftpmaster.internal/ubuntu resolute/main arm64 gcc-aarch64-linux-gnu arm64 4:15.2.0-4ubuntu1 [1206 B] 251s Get:24 http://ftpmaster.internal/ubuntu resolute/main arm64 gcc arm64 4:15.2.0-4ubuntu1 [5016 B] 251s Get:25 http://ftpmaster.internal/ubuntu resolute/main arm64 libstdc++-15-dev arm64 15.2.0-12ubuntu1 [2549 kB] 260s Get:26 http://ftpmaster.internal/ubuntu resolute/main arm64 g++-15-aarch64-linux-gnu arm64 15.2.0-12ubuntu1 [13.2 MB] 284s Get:27 http://ftpmaster.internal/ubuntu resolute/main arm64 g++-15 arm64 15.2.0-12ubuntu1 [25.3 kB] 284s Get:28 http://ftpmaster.internal/ubuntu resolute/main arm64 g++-aarch64-linux-gnu arm64 4:15.2.0-4ubuntu1 [956 B] 284s Get:29 http://ftpmaster.internal/ubuntu resolute/main arm64 g++ arm64 4:15.2.0-4ubuntu1 [1080 B] 284s Get:30 http://ftpmaster.internal/ubuntu resolute/main arm64 build-essential arm64 12.12ubuntu2 [5254 B] 284s Get:31 http://ftpmaster.internal/ubuntu resolute/main arm64 dctrl-tools arm64 2.24-3build4 [102 kB] 284s Get:32 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-mono all 2.37-8build1 [502 kB] 284s Get:33 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-core all 2.37-8build1 [834 kB] 285s Get:34 http://ftpmaster.internal/ubuntu resolute/main arm64 fontconfig-config arm64 2.17.1-3ubuntu1 [38.5 kB] 285s Get:35 http://ftpmaster.internal/ubuntu resolute/main arm64 libfontconfig1 arm64 2.17.1-3ubuntu1 [144 kB] 285s Get:36 http://ftpmaster.internal/ubuntu resolute/main arm64 fontconfig arm64 2.17.1-3ubuntu1 [181 kB] 285s Get:37 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1build1 [531 kB] 286s Get:38 http://ftpmaster.internal/ubuntu resolute/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-6 [119 kB] 286s Get:39 http://ftpmaster.internal/ubuntu resolute/universe arm64 fonts-lmodern all 2.005-1build1 [4788 kB] 294s Get:40 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-mathjax all 2.7.9+dfsg-1build1 [2283 kB] 298s Get:41 http://ftpmaster.internal/ubuntu resolute/main arm64 libgfortran5 arm64 15.2.0-12ubuntu1 [451 kB] 298s Get:42 http://ftpmaster.internal/ubuntu resolute/main arm64 libgfortran-15-dev arm64 15.2.0-12ubuntu1 [490 kB] 298s Get:43 http://ftpmaster.internal/ubuntu resolute/main arm64 gfortran-15-aarch64-linux-gnu arm64 15.2.0-12ubuntu1 [12.5 MB] 320s Get:44 http://ftpmaster.internal/ubuntu resolute/main arm64 gfortran-15 arm64 15.2.0-12ubuntu1 [18.1 kB] 320s Get:45 http://ftpmaster.internal/ubuntu resolute/main arm64 gfortran-aarch64-linux-gnu arm64 4:15.2.0-4ubuntu1 [1022 B] 320s Get:46 http://ftpmaster.internal/ubuntu resolute/main arm64 gfortran arm64 4:15.2.0-4ubuntu1 [1160 B] 320s Get:47 http://ftpmaster.internal/ubuntu resolute/main arm64 icu-devtools arm64 78.2-1ubuntu1 [207 kB] 320s Get:48 http://ftpmaster.internal/ubuntu resolute/main arm64 javascript-common all 12+nmu1build1 [4864 B] 320s Get:49 http://ftpmaster.internal/ubuntu resolute/main arm64 libsuitesparseconfig7 arm64 1:7.12.1+dfsg-1 [22.0 kB] 320s Get:50 http://ftpmaster.internal/ubuntu resolute/universe arm64 libamd3 arm64 1:7.12.1+dfsg-1 [34.6 kB] 320s Get:51 http://ftpmaster.internal/ubuntu resolute/main arm64 libio-string-perl all 1.08-4 [11.1 kB] 320s Get:52 http://ftpmaster.internal/ubuntu resolute/universe arm64 liblatex-tounicode-perl all 1.93-1 [29.2 kB] 320s Get:53 http://ftpmaster.internal/ubuntu resolute/universe arm64 libbibtex-parser-perl all 1.93+dfsg-1 [17.4 kB] 320s Get:54 http://ftpmaster.internal/ubuntu resolute/main arm64 libblas3 arm64 3.12.1-7ubuntu1 [181 kB] 320s Get:55 http://ftpmaster.internal/ubuntu resolute/main arm64 libblas-dev arm64 3.12.1-7ubuntu1 [160 kB] 320s Get:56 http://ftpmaster.internal/ubuntu resolute/main arm64 libboost1.90-dev arm64 1.90.0-2ubuntu1 [11.5 MB] 339s Get:57 http://ftpmaster.internal/ubuntu resolute/main arm64 libboost-dev arm64 1.90.0.0ubuntu3 [4764 B] 339s Get:58 http://ftpmaster.internal/ubuntu resolute/main arm64 libbz2-dev arm64 1.0.8-6build2 [34.9 kB] 339s Get:59 http://ftpmaster.internal/ubuntu resolute/main arm64 libpixman-1-0 arm64 0.46.4-1 [204 kB] 339s Get:60 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-render0 arm64 1.17.0-2ubuntu1 [16.4 kB] 339s Get:61 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-shm0 arm64 1.17.0-2ubuntu1 [5938 B] 339s Get:62 http://ftpmaster.internal/ubuntu resolute/main arm64 libxrender1 arm64 1:0.9.12-1 [19.5 kB] 339s Get:63 http://ftpmaster.internal/ubuntu resolute/main arm64 libcairo2 arm64 1.18.4-3 [556 kB] 340s Get:64 http://ftpmaster.internal/ubuntu resolute/main arm64 libcolamd3 arm64 1:7.12.1+dfsg-1 [27.1 kB] 340s Get:65 http://ftpmaster.internal/ubuntu resolute/main arm64 libdatrie1 arm64 0.2.14-1 [19.6 kB] 340s Get:66 http://ftpmaster.internal/ubuntu resolute/main arm64 libdeflate0 arm64 1.23-2build1 [46.8 kB] 340s Get:67 http://ftpmaster.internal/ubuntu resolute/main arm64 libdeflate-dev arm64 1.23-2build1 [54.3 kB] 340s Get:68 http://ftpmaster.internal/ubuntu resolute/main arm64 libltdl7 arm64 2.5.4-9 [43.3 kB] 340s Get:69 http://ftpmaster.internal/ubuntu resolute/universe arm64 libglpk40 arm64 5.0-2 [347 kB] 340s Get:70 http://ftpmaster.internal/ubuntu resolute/main arm64 libgraphite2-3 arm64 1.3.14-11ubuntu1 [72.1 kB] 340s Get:71 http://ftpmaster.internal/ubuntu resolute/main arm64 libharfbuzz0b arm64 12.3.2-1 [510 kB] 340s Get:72 http://ftpmaster.internal/ubuntu resolute/main arm64 x11-common all 1:7.7+24ubuntu1 [22.4 kB] 340s Get:73 http://ftpmaster.internal/ubuntu resolute/main arm64 libice6 arm64 2:1.1.1-1build1 [43.0 kB] 340s Get:74 http://ftpmaster.internal/ubuntu resolute/main arm64 libicu-dev arm64 78.2-1ubuntu1 [12.5 MB] 362s Get:75 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg-turbo8 arm64 2.1.5-4ubuntu3 [161 kB] 362s Get:76 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg-turbo8-dev arm64 2.1.5-4ubuntu3 [301 kB] 362s Get:77 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 362s Get:78 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 362s Get:79 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 362s Get:80 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-bootstrap all 3.4.1+dfsg-6 [129 kB] 362s Get:81 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-popper.js all 1.16.1+ds-6build1 [53.8 kB] 362s Get:82 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-bootstrap4 all 4.6.2+dfsg-1 [532 kB] 363s Get:83 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-d3 all 3.5.17-4build1 [136 kB] 363s Get:84 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 363s Get:85 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-highlight.js all 10.7.3+dfsg-2 [144 kB] 363s Get:86 http://ftpmaster.internal/ubuntu resolute/main arm64 libjs-jquery all 3.7.1+dfsg+~3.5.33-1build1 [321 kB] 363s Get:87 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2build1 [145 kB] 363s Get:88 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 363s Get:89 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-2 [3946 B] 363s Get:90 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 363s Get:91 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1build1 [251 kB] 363s Get:92 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-json all 0~20221030+~1.0.8-1build1 [20.6 kB] 363s Get:93 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 363s Get:94 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-prettify all 2015.12.04+dfsg-3 [41.4 kB] 363s Get:95 http://ftpmaster.internal/ubuntu resolute/universe arm64 libkpathsea6 arm64 2025.20250727.75242+ds-5build1 [65.4 kB] 363s Get:96 http://ftpmaster.internal/ubuntu resolute/main arm64 liblapack3 arm64 3.12.1-7ubuntu1 [2299 kB] 367s Get:97 http://ftpmaster.internal/ubuntu resolute/main arm64 liblapack-dev arm64 3.12.1-7ubuntu1 [4456 kB] 375s Get:98 http://ftpmaster.internal/ubuntu resolute/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu2 [174 kB] 375s Get:99 http://ftpmaster.internal/ubuntu resolute/main arm64 liblua5.4-0 arm64 5.4.8-1 [171 kB] 375s Get:100 http://ftpmaster.internal/ubuntu resolute/universe arm64 libmpfi0 arm64 1.5.4+ds-4build1 [36.4 kB] 375s Get:101 http://ftpmaster.internal/ubuntu resolute/main arm64 libncurses-dev arm64 6.6+20251231-1 [391 kB] 375s Get:102 http://ftpmaster.internal/ubuntu resolute/main arm64 libthai-data all 0.1.30-1 [155 kB] 375s Get:103 http://ftpmaster.internal/ubuntu resolute/main arm64 libthai0 arm64 0.1.30-1 [18.3 kB] 375s Get:104 http://ftpmaster.internal/ubuntu resolute/main arm64 libpango-1.0-0 arm64 1.57.0-1 [238 kB] 375s Get:105 http://ftpmaster.internal/ubuntu resolute/main arm64 libpangoft2-1.0-0 arm64 1.57.0-1 [51.5 kB] 375s Get:106 http://ftpmaster.internal/ubuntu resolute/main arm64 libpangocairo-1.0-0 arm64 1.57.0-1 [27.9 kB] 375s Get:107 http://ftpmaster.internal/ubuntu resolute/main arm64 libpaper2 arm64 2.2.5-0.3build1 [17.3 kB] 375s Get:108 http://ftpmaster.internal/ubuntu resolute/main arm64 libpaper-utils arm64 2.2.5-0.3build1 [15.4 kB] 375s Get:109 http://ftpmaster.internal/ubuntu resolute/main arm64 libpcre2-16-0 arm64 10.46-1 [225 kB] 375s Get:110 http://ftpmaster.internal/ubuntu resolute/main arm64 libpcre2-32-0 arm64 10.46-1 [213 kB] 375s Get:111 http://ftpmaster.internal/ubuntu resolute/main arm64 libpcre2-posix3 arm64 10.46-1 [7300 B] 375s Get:112 http://ftpmaster.internal/ubuntu resolute/main arm64 libpcre2-dev arm64 10.46-1 [772 kB] 376s Get:113 http://ftpmaster.internal/ubuntu resolute/main arm64 libpkgconf3 arm64 1.8.1-4build1 [33.7 kB] 376s Get:114 http://ftpmaster.internal/ubuntu resolute/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu2 [899 kB] 378s Get:115 http://ftpmaster.internal/ubuntu resolute/main arm64 libpng-dev arm64 1.6.54-1 [268 kB] 378s Get:116 http://ftpmaster.internal/ubuntu resolute/universe arm64 libpotrace0 arm64 1.16-2build2 [16.3 kB] 378s Get:117 http://ftpmaster.internal/ubuntu resolute/universe arm64 libptexenc1 arm64 2025.20250727.75242+ds-5build1 [46.2 kB] 378s Get:118 http://ftpmaster.internal/ubuntu resolute/main arm64 libreadline-dev arm64 8.3-3 [199 kB] 378s Get:119 http://ftpmaster.internal/ubuntu resolute/main arm64 libsharpyuv0 arm64 1.5.0-0.1build1 [16.7 kB] 378s Get:120 http://ftpmaster.internal/ubuntu resolute/main arm64 libsm6 arm64 2:1.2.6-1build1 [16.8 kB] 378s Get:121 http://ftpmaster.internal/ubuntu resolute/universe arm64 libsynctex2 arm64 2025.20250727.75242+ds-5build1 [61.4 kB] 378s Get:122 http://ftpmaster.internal/ubuntu resolute/main arm64 libtcl8.6 arm64 8.6.17+dfsg-1build1 [983 kB] 380s Get:123 http://ftpmaster.internal/ubuntu resolute/universe arm64 libteckit0 arm64 2.5.13+ds-1 [393 kB] 380s Get:124 http://ftpmaster.internal/ubuntu resolute/universe arm64 libtexlua53-5 arm64 2025.20250727.75242+ds-5build1 [122 kB] 380s Get:125 http://ftpmaster.internal/ubuntu resolute/main arm64 libjbig0 arm64 2.1-6.1ubuntu3 [29.2 kB] 380s Get:126 http://ftpmaster.internal/ubuntu resolute/main arm64 libwebp7 arm64 1.5.0-0.1build1 [205 kB] 380s Get:127 http://ftpmaster.internal/ubuntu resolute/main arm64 libtiff6 arm64 4.7.0-3ubuntu3 [196 kB] 380s Get:128 http://ftpmaster.internal/ubuntu resolute/main arm64 libxft2 arm64 2.3.6-1build2 [43.2 kB] 380s Get:129 http://ftpmaster.internal/ubuntu resolute/main arm64 libxss1 arm64 1:1.2.3-1build4 [7102 B] 380s Get:130 http://ftpmaster.internal/ubuntu resolute/main arm64 libtk8.6 arm64 8.6.17-1 [811 kB] 381s Get:131 http://ftpmaster.internal/ubuntu resolute/main arm64 libxt6t64 arm64 1:1.2.1-1.3 [168 kB] 381s Get:132 http://ftpmaster.internal/ubuntu resolute/main arm64 libxmu6 arm64 2:1.1.3-4 [47.6 kB] 381s Get:133 http://ftpmaster.internal/ubuntu resolute/main arm64 libxpm4 arm64 1:3.5.17-1build3 [35.5 kB] 381s Get:134 http://ftpmaster.internal/ubuntu resolute/main arm64 libxaw7 arm64 2:1.0.16-1build1 [183 kB] 381s Get:135 http://ftpmaster.internal/ubuntu resolute/main arm64 libxi6 arm64 2:1.8.2-2 [32.4 kB] 381s Get:136 http://ftpmaster.internal/ubuntu resolute/main arm64 libzstd-dev arm64 1.5.7+dfsg-3 [349 kB] 381s Get:137 http://ftpmaster.internal/ubuntu resolute/universe arm64 libzzip-0-13t64 arm64 0.13.78+dfsg.1-0.2 [30.7 kB] 381s Get:138 http://ftpmaster.internal/ubuntu resolute/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 381s Get:139 http://ftpmaster.internal/ubuntu resolute/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 381s Get:140 http://ftpmaster.internal/ubuntu resolute/universe arm64 node-normalize.css all 8.0.1-5.1 [10.4 kB] 381s Get:141 http://ftpmaster.internal/ubuntu resolute/universe arm64 pandoc-data all 3.1.11.1-3build1 [78.8 kB] 381s Get:142 http://ftpmaster.internal/ubuntu resolute/universe arm64 pandoc arm64 3.1.11.1+ds-4 [28.0 MB] 444s Get:143 http://ftpmaster.internal/ubuntu resolute/main arm64 zip arm64 3.0-15ubuntu3 [170 kB] 444s Get:144 http://ftpmaster.internal/ubuntu resolute/main arm64 unzip arm64 6.0-29ubuntu1 [176 kB] 444s Get:145 http://ftpmaster.internal/ubuntu resolute/main arm64 xdg-utils all 1.2.1-2ubuntu2 [66.1 kB] 444s Get:146 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-base-core arm64 4.5.2-1ubuntu2 [28.6 MB] 509s Get:147 http://ftpmaster.internal/ubuntu resolute/main arm64 liblzma-dev arm64 5.8.2-2 [180 kB] 509s Get:148 http://ftpmaster.internal/ubuntu resolute/main arm64 pkgconf-bin arm64 1.8.1-4build1 [21.7 kB] 509s Get:149 http://ftpmaster.internal/ubuntu resolute/main arm64 pkgconf arm64 1.8.1-4build1 [16.8 kB] 509s Get:150 http://ftpmaster.internal/ubuntu resolute/main arm64 libtirpc-dev arm64 1.3.6+ds-1 [202 kB] 509s Get:151 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-base-dev all 4.5.2-1ubuntu2 [1880 B] 509s Get:152 http://ftpmaster.internal/ubuntu resolute/universe arm64 pkg-r-autopkgtest all 20250812 [6158 B] 509s Get:153 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-biocgenerics all 0.52.0-2 [624 kB] 510s Get:154 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-biobase arm64 2.66.0-2 [2331 kB] 514s Get:155 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-s4vectors arm64 0.44.0+dfsg-2 [2054 kB] 517s Get:156 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-iranges arm64 2.40.1-3 [2301 kB] 521s Get:157 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-dbi all 1.2.3-1build1 [855 kB] 523s Get:158 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-bit arm64 4.6.0+dfsg-1 [450 kB] 523s Get:159 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-bit64 arm64 4.6.0-1-4 [495 kB] 523s Get:160 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rlang arm64 1.1.5-3 [1706 kB] 526s Get:161 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-cli arm64 3.6.4-1 [1374 kB] 529s Get:162 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-glue arm64 1.8.0-1 [163 kB] 529s Get:163 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-lifecycle all 1.0.5+dfsg-1 [120 kB] 529s Get:164 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 531s Get:165 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-blob all 1.3.0-1 [54.1 kB] 531s Get:166 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-fastmap arm64 1.2.0-1 [70.6 kB] 531s Get:167 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-cachem arm64 1.1.0-1 [74.1 kB] 531s Get:168 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-memoise all 2.0.1-1build1 [54.5 kB] 531s Get:169 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-pkgconfig all 2.0.3-2build2 [20.4 kB] 531s Get:170 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-plogr all 0.2.0-3build2 [15.8 kB] 531s Get:171 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-cpp11 all 0.5.3-1 [242 kB] 531s Get:172 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rsqlite arm64 2.3.9-1 [1247 kB] 534s Get:173 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-curl arm64 7.0.0+dfsg-1 [202 kB] 535s Get:174 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-jsonlite arm64 1.9.1+dfsg-1 [445 kB] 535s Get:175 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-mime arm64 0.12-2 [35.8 kB] 535s Get:176 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-sys arm64 3.4.3-1 [45.2 kB] 535s Get:177 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-askpass arm64 1.2.1-1 [24.8 kB] 535s Get:178 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-openssl arm64 2.3.2+dfsg-1 [406 kB] 535s Get:179 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-r6 all 2.6.1-1 [101 kB] 535s Get:180 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 535s Get:181 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-png arm64 0.1-8-1build2 [40.1 kB] 535s Get:182 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB] 535s Get:183 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-xvector arm64 0.46.0-2 [618 kB] 536s Get:184 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-ucsc.utils all 1.2.0+ds-2 [77.2 kB] 536s Get:185 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB] 561s Get:186 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-genomeinfodb all 1.42.3+dfsg-1 [3887 kB] 568s Get:187 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-crayon all 1.5.3-1 [165 kB] 568s Get:188 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-biostrings arm64 2.74.1+dfsg-2 [13.3 MB] 593s Get:189 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-keggrest all 1.46.0+dfsg-3 [183 kB] 593s Get:190 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-annotationdbi all 1.68.0-2 [4857 kB] 602s Get:191 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-xml arm64 3.99-0.20-1 [1749 kB] 605s Get:192 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-xtable all 1:1.8-4-2build1 [691 kB] 607s Get:193 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-annotate all 1.84.0+dfsg-2 [1870 kB] 610s Get:194 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-formatr all 1.14-2 [152 kB] 610s Get:195 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-lambda.r all 1.2.4-2build2 [118 kB] 610s Get:196 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-futile.options all 1.0.1-3build2 [20.5 kB] 610s Get:197 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-futile.logger all 1.4.3-4build2 [98.4 kB] 610s Get:198 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-snow all 1:0.4.4-2build1 [98.7 kB] 610s Get:199 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-codetools all 0.2-20-1build1 [91.1 kB] 610s Get:200 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-bh all 1.84.0-1 [5962 B] 610s Get:201 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-biocparallel arm64 1.40.0-2 [1333 kB] 612s Get:202 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-base64enc arm64 0.1-3-3build1 [28.5 kB] 612s Get:203 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-digest arm64 0.6.39-1 [196 kB] 612s Get:204 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-htmltools arm64 0.5.8.1-1 [373 kB] 612s Get:205 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-evaluate all 1.0.5-1 [117 kB] 612s Get:206 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-xfun arm64 0.55+dfsg-1 [587 kB] 614s Get:207 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 614s Get:208 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-yaml arm64 2.3.10-1 [108 kB] 614s Get:209 http://ftpmaster.internal/ubuntu resolute/main arm64 libjs-mathjax all 2.7.9+dfsg-1build1 [6017 kB] 625s Get:210 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-knitr all 1.51+dfsg-1 [847 kB] 627s Get:211 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-5 [13.7 kB] 627s Get:212 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-fs arm64 1.6.5+dfsg-1 [244 kB] 627s Get:213 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rappdirs arm64 0.3.3-1build1 [49.5 kB] 628s Get:214 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-sass arm64 0.4.9+dfsg-1 [957 kB] 630s Get:215 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-bslib all 0.9.0+dfsg-3build1 [4560 kB] 641s Get:216 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-fontawesome all 0.5.3-1 [1331 kB] 644s Get:217 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-tinytex all 0.58-1 [148 kB] 644s Get:218 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-modernizr all 3.13.0-0.1build1 [100 kB] 644s Get:219 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-littler arm64 0.3.22-1 [85.1 kB] 644s Get:220 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 644s Get:221 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rcpp arm64 1.1.0-1 [2011 kB] 648s Get:222 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-later arm64 1.4.1+dfsg-1 [141 kB] 648s Get:223 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 648s Get:224 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-promises arm64 1.3.2+dfsg-1 [290 kB] 648s Get:225 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-httpuv arm64 1.6.15+dfsg-1 [489 kB] 648s Get:226 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 648s Get:227 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 648s Get:228 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-commonmark arm64 1.9.5-1 [130 kB] 648s Get:229 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 648s Get:230 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB] 654s Get:231 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rmarkdown all 2.30+dfsg-1 [1501 kB] 657s Get:232 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-bookdown all 0.42+dfsg-1 [1409 kB] 660s Get:233 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB] 660s Get:234 http://ftpmaster.internal/ubuntu resolute/universe arm64 tex-common all 6.20 [30.0 kB] 660s Get:235 http://ftpmaster.internal/ubuntu resolute/main arm64 t1utils arm64 1.41-4build4 [59.8 kB] 660s Get:236 http://ftpmaster.internal/ubuntu resolute/universe arm64 texlive-binaries arm64 2025.20250727.75242+ds-5build1 [8302 kB] 678s Get:237 http://ftpmaster.internal/ubuntu resolute/universe arm64 texlive-base all 2025.20260124-1 [22.8 MB] 724s Get:238 http://ftpmaster.internal/ubuntu resolute/universe arm64 texlive-latex-base all 2025.20260124-1 [1321 kB] 726s Get:239 http://ftpmaster.internal/ubuntu resolute/universe arm64 texlive-bibtex-extra all 2025.20260124-1 [80.6 MB] 885s Get:240 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-biocversion all 3.20.0-2 [11.1 kB] 885s Get:241 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-biocstyle all 2.34.0+dfsg-1 [451 kB] 885s Get:242 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-plyr arm64 1.8.9-1 [831 kB] 887s Get:243 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-lattice arm64 0.22-7-1 [1365 kB] 890s Get:244 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-matrix arm64 1.7-4-1 [4146 kB] 897s Get:245 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-biomformat all 1.34.0+dfsg-2 [229 kB] 898s Get:246 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-matrixstats arm64 1.5.0-1 [496 kB] 898s Get:247 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-matrixgenerics all 1.18.1-1 [450 kB] 898s Get:248 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-abind all 1.4-8-1build1 [67.0 kB] 898s Get:249 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-s4arrays arm64 1.6.0+dfsg-2 [698 kB] 901s Get:250 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-sparsearray arm64 1.6.2+dfsg-2 [1369 kB] 907s Get:251 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-delayedarray arm64 0.32.0+dfsg-2 [2064 kB] 911s Get:252 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-genomicranges arm64 1.58.0+dfsg-2 [2083 kB] 915s Get:253 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-summarizedexperiment all 1.36.0+dfsg-2 [1109 kB] 920s Get:254 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-locfit arm64 1.5-9.12-1 [514 kB] 920s Get:255 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-gtable all 0.3.6+dfsg-1 [199 kB] 920s Get:256 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-isoband arm64 0.2.7-1 [1481 kB] 922s Get:257 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-s7 arm64 0.2.0-1 [329 kB] 922s Get:258 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-farver arm64 2.1.2-1 [1344 kB] 926s Get:259 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-labeling all 0.4.3-1 [62.1 kB] 926s Get:260 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build2 [54.0 kB] 926s Get:261 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-viridislite all 0.4.3-1 [1088 kB] 930s Get:262 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-scales all 1.4.0-1 [725 kB] 931s Get:263 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 r-cran-ggplot2 all 4.0.2+dfsg-1 [4941 kB] 944s Get:264 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rcpparmadillo arm64 15.2.3-1-1 [916 kB] 945s Get:265 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-deseq2 arm64 1.46.0+dfsg-2 [1237 kB] 948s Get:266 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-survival arm64 3.8-6-1 [8270 kB] 962s Get:267 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-genefilter arm64 1.88.0-2 [1241 kB] 965s Get:268 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-statmod arm64 1.5.0-1 [294 kB] 965s Get:269 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-limma arm64 3.62.2+dfsg-1 [1968 kB] 969s Get:270 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-iterators all 1.0.14-1build1 [336 kB] 969s Get:271 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-foreach all 1.5.2-1build1 [124 kB] 969s Get:272 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-shape all 1.4.6.1-1 [749 kB] 971s Get:273 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rcppeigen arm64 0.3.4.0.2-1 [1422 kB] 973s Get:274 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-glmnet arm64 4.1-8-1 [1898 kB] 977s Get:275 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-gtools arm64 3.9.5-1build1 [345 kB] 977s Get:276 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-bitops arm64 1.0-9-1 [30.2 kB] 977s Get:277 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-catools arm64 1.18.3-1 [203 kB] 977s Get:278 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-mass arm64 7.3-65-1 [1109 kB] 979s Get:279 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-kernsmooth arm64 2.23-26-1build1 [93.6 kB] 979s Get:280 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-gdata all 3.0.1-1build1 [491 kB] 979s Get:281 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-gplots all 3.3.0-1 [3825 kB] 985s Get:282 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-wrench all 1.24.0+dfsg-2 [59.4 kB] 985s Get:283 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-metagenomeseq all 1.48.1-1 [2142 kB] 989s Get:284 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-multtest arm64 2.62.0-2 [842 kB] 991s Get:285 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-pixmap all 0.4-14-1 [217 kB] 991s Get:286 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-sp arm64 1:2.2-0+dfsg-1 [1443 kB] 993s Get:287 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-ade4 arm64 1.7-23-1 [5381 kB] 1003s Get:288 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-nlme arm64 3.1.168-1 [2310 kB] 1007s Get:289 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-ape arm64 5.8-1-1 [2901 kB] 1011s Get:290 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-cluster arm64 2.1.8.2-1 [568 kB] 1012s Get:291 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-data.table arm64 1.17.0+dfsg-1 [2129 kB] 1016s Get:292 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-igraph arm64 2.1.4-1build1 [5151 kB] 1027s Get:293 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-stringi arm64 1.8.4-1build2 [901 kB] 1028s Get:294 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB] 1028s Get:295 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-reshape2 arm64 1.4.4-2build2 [118 kB] 1028s Get:296 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-permute all 0.9-8-1 [237 kB] 1028s Get:297 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-mgcv arm64 1.9-4-1 [3546 kB] 1036s Get:298 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-vegan arm64 2.6-10+dfsg-3 [3134 kB] 1042s Get:299 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-phyloseq all 1.50.0+dfsg-2 [2205 kB] 1045s Get:300 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-brio arm64 1.1.5-1 [39.1 kB] 1045s Get:301 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-ps arm64 1.9.0-1 [407 kB] 1045s Get:302 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-processx arm64 3.8.6-1 [363 kB] 1045s Get:303 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-callr all 3.7.6-1 [458 kB] 1045s Get:304 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-desc all 1.4.3-1 [359 kB] 1045s Get:305 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-diffobj arm64 0.3.5-1build1 [1154 kB] 1047s Get:306 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-pkgbuild all 1.4.8-1 [219 kB] 1047s Get:307 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rprojroot all 2.1.1-1 [131 kB] 1047s Get:308 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-pkgload all 1.4.1-1 [252 kB] 1047s Get:309 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-praise all 1.0.0-4build2 [20.9 kB] 1047s Get:310 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-waldo all 0.6.2-1 [153 kB] 1047s Get:311 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-testthat arm64 3.2.3-1 [1644 kB] 1050s Preconfiguring packages ... 1051s Fetched 480 MB in 14min 53s (538 kB/s) 1051s Selecting previously unselected package libc-dev-bin. 1051s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 136600 files and directories currently installed.) 1051s Preparing to unpack .../000-libc-dev-bin_2.42-2ubuntu4_arm64.deb ... 1051s Unpacking libc-dev-bin (2.42-2ubuntu4) ... 1051s Selecting previously unselected package linux-libc-dev:arm64. 1051s Preparing to unpack .../001-linux-libc-dev_6.19.0-3.3_arm64.deb ... 1051s Unpacking linux-libc-dev:arm64 (6.19.0-3.3) ... 1051s Selecting previously unselected package libcrypt-dev:arm64. 1051s Preparing to unpack .../002-libcrypt-dev_1%3a4.5.1-1_arm64.deb ... 1051s Unpacking libcrypt-dev:arm64 (1:4.5.1-1) ... 1051s Selecting previously unselected package rpcsvc-proto. 1051s Preparing to unpack .../003-rpcsvc-proto_1.4.3-1build1_arm64.deb ... 1051s Unpacking rpcsvc-proto (1.4.3-1build1) ... 1051s Selecting previously unselected package libc6-dev:arm64. 1051s Preparing to unpack .../004-libc6-dev_2.42-2ubuntu4_arm64.deb ... 1051s Unpacking libc6-dev:arm64 (2.42-2ubuntu4) ... 1051s Selecting previously unselected package libisl23:arm64. 1051s Preparing to unpack .../005-libisl23_0.27-1build1_arm64.deb ... 1051s Unpacking libisl23:arm64 (0.27-1build1) ... 1051s Selecting previously unselected package libmpc3:arm64. 1051s Preparing to unpack .../006-libmpc3_1.3.1-2_arm64.deb ... 1051s Unpacking libmpc3:arm64 (1.3.1-2) ... 1051s Selecting previously unselected package cpp-15-aarch64-linux-gnu. 1051s Preparing to unpack .../007-cpp-15-aarch64-linux-gnu_15.2.0-12ubuntu1_arm64.deb ... 1051s Unpacking cpp-15-aarch64-linux-gnu (15.2.0-12ubuntu1) ... 1051s Selecting previously unselected package cpp-15. 1051s Preparing to unpack .../008-cpp-15_15.2.0-12ubuntu1_arm64.deb ... 1051s Unpacking cpp-15 (15.2.0-12ubuntu1) ... 1051s Selecting previously unselected package cpp-aarch64-linux-gnu. 1051s Preparing to unpack .../009-cpp-aarch64-linux-gnu_4%3a15.2.0-4ubuntu1_arm64.deb ... 1051s Unpacking cpp-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 1051s Selecting previously unselected package cpp. 1051s Preparing to unpack .../010-cpp_4%3a15.2.0-4ubuntu1_arm64.deb ... 1051s Unpacking cpp (4:15.2.0-4ubuntu1) ... 1051s Selecting previously unselected package libcc1-0:arm64. 1051s Preparing to unpack .../011-libcc1-0_15.2.0-12ubuntu1_arm64.deb ... 1051s Unpacking libcc1-0:arm64 (15.2.0-12ubuntu1) ... 1052s Selecting previously unselected package libgomp1:arm64. 1052s Preparing to unpack .../012-libgomp1_15.2.0-12ubuntu1_arm64.deb ... 1052s Unpacking libgomp1:arm64 (15.2.0-12ubuntu1) ... 1052s Selecting previously unselected package libitm1:arm64. 1052s Preparing to unpack .../013-libitm1_15.2.0-12ubuntu1_arm64.deb ... 1052s Unpacking libitm1:arm64 (15.2.0-12ubuntu1) ... 1052s Selecting previously unselected package libasan8:arm64. 1052s Preparing to unpack .../014-libasan8_15.2.0-12ubuntu1_arm64.deb ... 1052s Unpacking libasan8:arm64 (15.2.0-12ubuntu1) ... 1052s Selecting previously unselected package liblsan0:arm64. 1052s Preparing to unpack .../015-liblsan0_15.2.0-12ubuntu1_arm64.deb ... 1052s Unpacking liblsan0:arm64 (15.2.0-12ubuntu1) ... 1052s Selecting previously unselected package libtsan2:arm64. 1052s Preparing to unpack .../016-libtsan2_15.2.0-12ubuntu1_arm64.deb ... 1052s Unpacking libtsan2:arm64 (15.2.0-12ubuntu1) ... 1052s Selecting previously unselected package libubsan1:arm64. 1052s Preparing to unpack .../017-libubsan1_15.2.0-12ubuntu1_arm64.deb ... 1052s Unpacking libubsan1:arm64 (15.2.0-12ubuntu1) ... 1052s Selecting previously unselected package libhwasan0:arm64. 1052s Preparing to unpack .../018-libhwasan0_15.2.0-12ubuntu1_arm64.deb ... 1052s Unpacking libhwasan0:arm64 (15.2.0-12ubuntu1) ... 1052s Selecting previously unselected package libgcc-15-dev:arm64. 1052s Preparing to unpack .../019-libgcc-15-dev_15.2.0-12ubuntu1_arm64.deb ... 1052s Unpacking libgcc-15-dev:arm64 (15.2.0-12ubuntu1) ... 1052s Selecting previously unselected package gcc-15-aarch64-linux-gnu. 1052s Preparing to unpack .../020-gcc-15-aarch64-linux-gnu_15.2.0-12ubuntu1_arm64.deb ... 1052s Unpacking gcc-15-aarch64-linux-gnu (15.2.0-12ubuntu1) ... 1052s Selecting previously unselected package gcc-15. 1053s Preparing to unpack .../021-gcc-15_15.2.0-12ubuntu1_arm64.deb ... 1053s Unpacking gcc-15 (15.2.0-12ubuntu1) ... 1053s Selecting previously unselected package gcc-aarch64-linux-gnu. 1053s Preparing to unpack .../022-gcc-aarch64-linux-gnu_4%3a15.2.0-4ubuntu1_arm64.deb ... 1053s Unpacking gcc-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 1053s Selecting previously unselected package gcc. 1053s Preparing to unpack .../023-gcc_4%3a15.2.0-4ubuntu1_arm64.deb ... 1053s Unpacking gcc (4:15.2.0-4ubuntu1) ... 1053s Selecting previously unselected package libstdc++-15-dev:arm64. 1053s Preparing to unpack .../024-libstdc++-15-dev_15.2.0-12ubuntu1_arm64.deb ... 1053s Unpacking libstdc++-15-dev:arm64 (15.2.0-12ubuntu1) ... 1053s Selecting previously unselected package g++-15-aarch64-linux-gnu. 1053s Preparing to unpack .../025-g++-15-aarch64-linux-gnu_15.2.0-12ubuntu1_arm64.deb ... 1053s Unpacking g++-15-aarch64-linux-gnu (15.2.0-12ubuntu1) ... 1053s Selecting previously unselected package g++-15. 1053s Preparing to unpack .../026-g++-15_15.2.0-12ubuntu1_arm64.deb ... 1053s Unpacking g++-15 (15.2.0-12ubuntu1) ... 1053s Selecting previously unselected package g++-aarch64-linux-gnu. 1053s Preparing to unpack .../027-g++-aarch64-linux-gnu_4%3a15.2.0-4ubuntu1_arm64.deb ... 1053s Unpacking g++-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 1053s Selecting previously unselected package g++. 1053s Preparing to unpack .../028-g++_4%3a15.2.0-4ubuntu1_arm64.deb ... 1053s Unpacking g++ (4:15.2.0-4ubuntu1) ... 1053s Selecting previously unselected package build-essential. 1053s Preparing to unpack .../029-build-essential_12.12ubuntu2_arm64.deb ... 1053s Unpacking build-essential (12.12ubuntu2) ... 1053s Selecting previously unselected package dctrl-tools. 1053s Preparing to unpack .../030-dctrl-tools_2.24-3build4_arm64.deb ... 1053s Unpacking dctrl-tools (2.24-3build4) ... 1053s Selecting previously unselected package fonts-dejavu-mono. 1053s Preparing to unpack .../031-fonts-dejavu-mono_2.37-8build1_all.deb ... 1053s Unpacking fonts-dejavu-mono (2.37-8build1) ... 1053s Selecting previously unselected package fonts-dejavu-core. 1053s Preparing to unpack .../032-fonts-dejavu-core_2.37-8build1_all.deb ... 1053s Unpacking fonts-dejavu-core (2.37-8build1) ... 1053s Selecting previously unselected package fontconfig-config. 1053s Preparing to unpack .../033-fontconfig-config_2.17.1-3ubuntu1_arm64.deb ... 1054s Unpacking fontconfig-config (2.17.1-3ubuntu1) ... 1054s Selecting previously unselected package libfontconfig1:arm64. 1054s Preparing to unpack .../034-libfontconfig1_2.17.1-3ubuntu1_arm64.deb ... 1054s Unpacking libfontconfig1:arm64 (2.17.1-3ubuntu1) ... 1054s Selecting previously unselected package fontconfig. 1054s Preparing to unpack .../035-fontconfig_2.17.1-3ubuntu1_arm64.deb ... 1054s Unpacking fontconfig (2.17.1-3ubuntu1) ... 1054s Selecting previously unselected package fonts-font-awesome. 1054s Preparing to unpack .../036-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1build1_all.deb ... 1054s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1build1) ... 1054s Selecting previously unselected package fonts-glyphicons-halflings. 1054s Preparing to unpack .../037-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-6_all.deb ... 1054s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-6) ... 1054s Selecting previously unselected package fonts-lmodern. 1054s Preparing to unpack .../038-fonts-lmodern_2.005-1build1_all.deb ... 1054s Unpacking fonts-lmodern (2.005-1build1) ... 1054s Selecting previously unselected package fonts-mathjax. 1054s Preparing to unpack .../039-fonts-mathjax_2.7.9+dfsg-1build1_all.deb ... 1054s Unpacking fonts-mathjax (2.7.9+dfsg-1build1) ... 1054s Selecting previously unselected package libgfortran5:arm64. 1054s Preparing to unpack .../040-libgfortran5_15.2.0-12ubuntu1_arm64.deb ... 1054s Unpacking libgfortran5:arm64 (15.2.0-12ubuntu1) ... 1054s Selecting previously unselected package libgfortran-15-dev:arm64. 1054s Preparing to unpack .../041-libgfortran-15-dev_15.2.0-12ubuntu1_arm64.deb ... 1054s Unpacking libgfortran-15-dev:arm64 (15.2.0-12ubuntu1) ... 1054s Selecting previously unselected package gfortran-15-aarch64-linux-gnu. 1054s Preparing to unpack .../042-gfortran-15-aarch64-linux-gnu_15.2.0-12ubuntu1_arm64.deb ... 1054s Unpacking gfortran-15-aarch64-linux-gnu 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libbibtex-parser-perl (1.93+dfsg-1) ... 1055s Selecting previously unselected package libblas3:arm64. 1055s Preparing to unpack .../053-libblas3_3.12.1-7ubuntu1_arm64.deb ... 1055s Unpacking libblas3:arm64 (3.12.1-7ubuntu1) ... 1055s Selecting previously unselected package libblas-dev:arm64. 1055s Preparing to unpack .../054-libblas-dev_3.12.1-7ubuntu1_arm64.deb ... 1055s Unpacking libblas-dev:arm64 (3.12.1-7ubuntu1) ... 1055s Selecting previously unselected package libboost1.90-dev:arm64. 1055s Preparing to unpack .../055-libboost1.90-dev_1.90.0-2ubuntu1_arm64.deb ... 1055s Unpacking libboost1.90-dev:arm64 (1.90.0-2ubuntu1) ... 1056s Selecting previously unselected package libboost-dev:arm64. 1056s Preparing to unpack .../056-libboost-dev_1.90.0.0ubuntu3_arm64.deb ... 1056s Unpacking libboost-dev:arm64 (1.90.0.0ubuntu3) ... 1057s Selecting previously unselected package libbz2-dev:arm64. 1057s Preparing to unpack .../057-libbz2-dev_1.0.8-6build2_arm64.deb ... 1057s Unpacking libbz2-dev:arm64 (1.0.8-6build2) ... 1057s Selecting previously unselected package libpixman-1-0:arm64. 1057s Preparing to unpack .../058-libpixman-1-0_0.46.4-1_arm64.deb ... 1057s Unpacking libpixman-1-0:arm64 (0.46.4-1) ... 1057s Selecting previously unselected package libxcb-render0:arm64. 1057s Preparing to unpack .../059-libxcb-render0_1.17.0-2ubuntu1_arm64.deb ... 1057s Unpacking libxcb-render0:arm64 (1.17.0-2ubuntu1) ... 1057s Selecting previously unselected package libxcb-shm0:arm64. 1057s Preparing to unpack .../060-libxcb-shm0_1.17.0-2ubuntu1_arm64.deb ... 1057s Unpacking libxcb-shm0:arm64 (1.17.0-2ubuntu1) ... 1057s Selecting previously unselected package libxrender1:arm64. 1057s Preparing to unpack .../061-libxrender1_1%3a0.9.12-1_arm64.deb ... 1057s Unpacking libxrender1:arm64 (1:0.9.12-1) ... 1057s Selecting previously unselected package libcairo2:arm64. 1057s Preparing to unpack .../062-libcairo2_1.18.4-3_arm64.deb ... 1057s Unpacking libcairo2:arm64 (1.18.4-3) ... 1057s 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1058s Unpacking libjs-microplugin.js (0.0.3+dfsg-2) ... 1058s Selecting previously unselected package libjs-jquery-selectize.js. 1058s Preparing to unpack .../089-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 1058s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 1058s Selecting previously unselected package libjs-jquery-ui. 1058s Preparing to unpack .../090-libjs-jquery-ui_1.13.2+dfsg-1build1_all.deb ... 1058s Unpacking libjs-jquery-ui (1.13.2+dfsg-1build1) ... 1058s Selecting previously unselected package libjs-json. 1059s Preparing to unpack .../091-libjs-json_0~20221030+~1.0.8-1build1_all.deb ... 1059s Unpacking libjs-json (0~20221030+~1.0.8-1build1) ... 1059s Selecting previously unselected package libjs-lunr. 1059s Preparing to unpack .../092-libjs-lunr_2.3.9~dfsg-2_all.deb ... 1059s Unpacking libjs-lunr (2.3.9~dfsg-2) ... 1059s Selecting previously unselected package libjs-prettify. 1059s Preparing to unpack .../093-libjs-prettify_2015.12.04+dfsg-3_all.deb ... 1059s Unpacking libjs-prettify (2015.12.04+dfsg-3) ... 1059s Selecting previously unselected package libkpathsea6:arm64. 1059s Preparing to unpack .../094-libkpathsea6_2025.20250727.75242+ds-5build1_arm64.deb ... 1059s Unpacking libkpathsea6:arm64 (2025.20250727.75242+ds-5build1) ... 1059s Selecting previously unselected package liblapack3:arm64. 1059s Preparing to unpack .../095-liblapack3_3.12.1-7ubuntu1_arm64.deb ... 1059s Unpacking liblapack3:arm64 (3.12.1-7ubuntu1) ... 1059s Selecting previously unselected package liblapack-dev:arm64. 1059s Preparing to unpack .../096-liblapack-dev_3.12.1-7ubuntu1_arm64.deb ... 1059s Unpacking liblapack-dev:arm64 (3.12.1-7ubuntu1) ... 1059s Selecting previously unselected package liblerc4:arm64. 1059s Preparing to unpack .../097-liblerc4_4.0.0+ds-5ubuntu2_arm64.deb ... 1059s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu2) ... 1059s Selecting previously unselected package liblua5.4-0:arm64. 1059s Preparing to unpack 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libpcre2-16-0:arm64 (10.46-1) ... 1059s Selecting previously unselected package libpcre2-32-0:arm64. 1059s Preparing to unpack .../109-libpcre2-32-0_10.46-1_arm64.deb ... 1059s Unpacking libpcre2-32-0:arm64 (10.46-1) ... 1059s Selecting previously unselected package libpcre2-posix3:arm64. 1060s Preparing to unpack .../110-libpcre2-posix3_10.46-1_arm64.deb ... 1060s Unpacking libpcre2-posix3:arm64 (10.46-1) ... 1060s Selecting previously unselected package libpcre2-dev:arm64. 1060s Preparing to unpack .../111-libpcre2-dev_10.46-1_arm64.deb ... 1060s Unpacking libpcre2-dev:arm64 (10.46-1) ... 1060s Selecting previously unselected package libpkgconf3:arm64. 1060s Preparing to unpack .../112-libpkgconf3_1.8.1-4build1_arm64.deb ... 1060s Unpacking libpkgconf3:arm64 (1.8.1-4build1) ... 1060s Selecting previously unselected package zlib1g-dev:arm64. 1060s Preparing to unpack .../113-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu2_arm64.deb ... 1060s Unpacking zlib1g-dev:arm64 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libsharpyuv0:arm64 (1.5.0-0.1build1) ... 1060s Selecting previously unselected package libsm6:arm64. 1060s Preparing to unpack .../119-libsm6_2%3a1.2.6-1build1_arm64.deb ... 1060s Unpacking libsm6:arm64 (2:1.2.6-1build1) ... 1060s Selecting previously unselected package libsynctex2:arm64. 1060s Preparing to unpack .../120-libsynctex2_2025.20250727.75242+ds-5build1_arm64.deb ... 1060s Unpacking libsynctex2:arm64 (2025.20250727.75242+ds-5build1) ... 1060s Selecting previously unselected package libtcl8.6:arm64. 1060s Preparing to unpack .../121-libtcl8.6_8.6.17+dfsg-1build1_arm64.deb ... 1060s Unpacking libtcl8.6:arm64 (8.6.17+dfsg-1build1) ... 1060s Selecting previously unselected package libteckit0:arm64. 1060s Preparing to unpack .../122-libteckit0_2.5.13+ds-1_arm64.deb ... 1060s Unpacking libteckit0:arm64 (2.5.13+ds-1) ... 1060s Selecting previously unselected package libtexlua53-5:arm64. 1060s Preparing to unpack .../123-libtexlua53-5_2025.20250727.75242+ds-5build1_arm64.deb ... 1060s Unpacking libtexlua53-5:arm64 (2025.20250727.75242+ds-5build1) ... 1060s Selecting previously unselected package libjbig0:arm64. 1060s Preparing to unpack .../124-libjbig0_2.1-6.1ubuntu3_arm64.deb ... 1060s Unpacking libjbig0:arm64 (2.1-6.1ubuntu3) ... 1060s Selecting previously unselected package libwebp7:arm64. 1060s Preparing to unpack .../125-libwebp7_1.5.0-0.1build1_arm64.deb ... 1060s Unpacking libwebp7:arm64 (1.5.0-0.1build1) ... 1060s Selecting previously unselected package libtiff6:arm64. 1060s Preparing to unpack .../126-libtiff6_4.7.0-3ubuntu3_arm64.deb ... 1060s Unpacking libtiff6:arm64 (4.7.0-3ubuntu3) ... 1060s Selecting previously unselected package libxft2:arm64. 1060s Preparing to unpack .../127-libxft2_2.3.6-1build2_arm64.deb ... 1060s Unpacking libxft2:arm64 (2.3.6-1build2) ... 1060s Selecting previously unselected package libxss1:arm64. 1060s Preparing to unpack .../128-libxss1_1%3a1.2.3-1build4_arm64.deb ... 1060s Unpacking libxss1:arm64 (1:1.2.3-1build4) ... 1060s Selecting previously unselected package libtk8.6:arm64. 1061s Preparing to unpack .../129-libtk8.6_8.6.17-1_arm64.deb ... 1061s Unpacking libtk8.6:arm64 (8.6.17-1) ... 1061s Selecting previously unselected package libxt6t64:arm64. 1061s Preparing to unpack .../130-libxt6t64_1%3a1.2.1-1.3_arm64.deb ... 1061s Unpacking libxt6t64:arm64 (1:1.2.1-1.3) ... 1061s Selecting previously unselected package libxmu6:arm64. 1061s Preparing to unpack .../131-libxmu6_2%3a1.1.3-4_arm64.deb ... 1061s Unpacking libxmu6:arm64 (2:1.1.3-4) ... 1061s Selecting previously unselected package libxpm4:arm64. 1061s Preparing to unpack .../132-libxpm4_1%3a3.5.17-1build3_arm64.deb ... 1061s Unpacking libxpm4:arm64 (1:3.5.17-1build3) ... 1061s Selecting previously unselected package libxaw7:arm64. 1061s Preparing to unpack .../133-libxaw7_2%3a1.0.16-1build1_arm64.deb ... 1061s Unpacking libxaw7:arm64 (2:1.0.16-1build1) ... 1061s Selecting previously unselected package libxi6:arm64. 1061s Preparing to unpack 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r-base-core. 1062s Preparing to unpack .../145-r-base-core_4.5.2-1ubuntu2_arm64.deb ... 1062s Unpacking r-base-core (4.5.2-1ubuntu2) ... 1062s Selecting previously unselected package liblzma-dev:arm64. 1063s Preparing to unpack .../146-liblzma-dev_5.8.2-2_arm64.deb ... 1063s Unpacking liblzma-dev:arm64 (5.8.2-2) ... 1063s Selecting previously unselected package pkgconf-bin. 1063s Preparing to unpack .../147-pkgconf-bin_1.8.1-4build1_arm64.deb ... 1063s Unpacking pkgconf-bin (1.8.1-4build1) ... 1063s Selecting previously unselected package pkgconf:arm64. 1063s Preparing to unpack .../148-pkgconf_1.8.1-4build1_arm64.deb ... 1063s Unpacking pkgconf:arm64 (1.8.1-4build1) ... 1063s Selecting previously unselected package libtirpc-dev:arm64. 1063s Preparing to unpack .../149-libtirpc-dev_1.3.6+ds-1_arm64.deb ... 1063s Unpacking libtirpc-dev:arm64 (1.3.6+ds-1) ... 1063s Selecting previously unselected package r-base-dev. 1063s Preparing to unpack .../150-r-base-dev_4.5.2-1ubuntu2_all.deb ... 1063s Unpacking r-base-dev (4.5.2-1ubuntu2) ... 1063s Selecting previously unselected package pkg-r-autopkgtest. 1063s Preparing to unpack .../151-pkg-r-autopkgtest_20250812_all.deb ... 1063s Unpacking pkg-r-autopkgtest (20250812) ... 1063s Selecting previously unselected package r-bioc-biocgenerics. 1063s Preparing to unpack .../152-r-bioc-biocgenerics_0.52.0-2_all.deb ... 1063s Unpacking r-bioc-biocgenerics (0.52.0-2) ... 1063s Selecting previously unselected package r-bioc-biobase. 1063s Preparing to unpack .../153-r-bioc-biobase_2.66.0-2_arm64.deb ... 1063s Unpacking r-bioc-biobase (2.66.0-2) ... 1063s Selecting previously unselected package r-bioc-s4vectors. 1063s Preparing to unpack .../154-r-bioc-s4vectors_0.44.0+dfsg-2_arm64.deb ... 1063s Unpacking r-bioc-s4vectors (0.44.0+dfsg-2) ... 1063s Selecting previously unselected package r-bioc-iranges. 1063s Preparing to unpack .../155-r-bioc-iranges_2.40.1-3_arm64.deb ... 1063s Unpacking r-bioc-iranges (2.40.1-3) ... 1063s Selecting previously unselected package r-cran-dbi. 1063s Preparing to unpack .../156-r-cran-dbi_1.2.3-1build1_all.deb ... 1063s Unpacking r-cran-dbi (1.2.3-1build1) ... 1063s Selecting previously unselected package r-cran-bit. 1063s Preparing to unpack .../157-r-cran-bit_4.6.0+dfsg-1_arm64.deb ... 1063s Unpacking r-cran-bit (4.6.0+dfsg-1) ... 1063s Selecting previously unselected package r-cran-bit64. 1063s Preparing to unpack .../158-r-cran-bit64_4.6.0-1-4_arm64.deb ... 1063s Unpacking r-cran-bit64 (4.6.0-1-4) ... 1063s Selecting previously unselected package r-cran-rlang. 1063s Preparing to unpack .../159-r-cran-rlang_1.1.5-3_arm64.deb ... 1063s Unpacking r-cran-rlang (1.1.5-3) ... 1063s Selecting previously unselected package r-cran-cli. 1063s Preparing to unpack .../160-r-cran-cli_3.6.4-1_arm64.deb ... 1063s Unpacking r-cran-cli (3.6.4-1) ... 1063s Selecting previously unselected package r-cran-glue. 1063s Preparing to unpack .../161-r-cran-glue_1.8.0-1_arm64.deb ... 1063s Unpacking r-cran-glue (1.8.0-1) ... 1063s Selecting previously unselected package r-cran-lifecycle. 1063s Preparing to unpack .../162-r-cran-lifecycle_1.0.5+dfsg-1_all.deb ... 1063s Unpacking r-cran-lifecycle (1.0.5+dfsg-1) ... 1063s Selecting previously unselected package r-cran-vctrs. 1063s Preparing to unpack .../163-r-cran-vctrs_0.6.5-1_arm64.deb ... 1063s Unpacking r-cran-vctrs (0.6.5-1) ... 1063s Selecting previously unselected package r-cran-blob. 1064s Preparing to unpack .../164-r-cran-blob_1.3.0-1_all.deb ... 1064s Unpacking r-cran-blob (1.3.0-1) ... 1064s Selecting previously unselected package r-cran-fastmap. 1064s Preparing to unpack .../165-r-cran-fastmap_1.2.0-1_arm64.deb ... 1064s Unpacking r-cran-fastmap (1.2.0-1) ... 1064s Selecting previously unselected package r-cran-cachem. 1064s Preparing to unpack .../166-r-cran-cachem_1.1.0-1_arm64.deb ... 1064s Unpacking r-cran-cachem (1.1.0-1) ... 1064s Selecting previously unselected package r-cran-memoise. 1064s Preparing to unpack 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... 1064s Selecting previously unselected package r-cran-jsonlite. 1064s Preparing to unpack .../173-r-cran-jsonlite_1.9.1+dfsg-1_arm64.deb ... 1064s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ... 1064s Selecting previously unselected package r-cran-mime. 1064s Preparing to unpack .../174-r-cran-mime_0.12-2_arm64.deb ... 1064s Unpacking r-cran-mime (0.12-2) ... 1064s Selecting previously unselected package r-cran-sys. 1064s Preparing to unpack .../175-r-cran-sys_3.4.3-1_arm64.deb ... 1064s Unpacking r-cran-sys (3.4.3-1) ... 1064s Selecting previously unselected package r-cran-askpass. 1064s Preparing to unpack .../176-r-cran-askpass_1.2.1-1_arm64.deb ... 1064s Unpacking r-cran-askpass (1.2.1-1) ... 1064s Selecting previously unselected package r-cran-openssl. 1064s Preparing to unpack .../177-r-cran-openssl_2.3.2+dfsg-1_arm64.deb ... 1064s Unpacking r-cran-openssl (2.3.2+dfsg-1) ... 1064s Selecting previously unselected package r-cran-r6. 1064s Preparing to unpack .../178-r-cran-r6_2.6.1-1_all.deb ... 1064s Unpacking r-cran-r6 (2.6.1-1) ... 1064s Selecting previously unselected package r-cran-httr. 1064s Preparing to unpack .../179-r-cran-httr_1.4.7+dfsg-1_all.deb ... 1064s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 1064s Selecting previously unselected package r-cran-png. 1064s Preparing to unpack .../180-r-cran-png_0.1-8-1build2_arm64.deb ... 1064s Unpacking r-cran-png (0.1-8-1build2) ... 1064s Selecting previously unselected package r-bioc-zlibbioc. 1064s Preparing to unpack .../181-r-bioc-zlibbioc_1.52.0+dfsg-2_all.deb ... 1064s Unpacking r-bioc-zlibbioc (1.52.0+dfsg-2) ... 1064s Selecting previously unselected package r-bioc-xvector. 1064s Preparing to unpack .../182-r-bioc-xvector_0.46.0-2_arm64.deb ... 1064s Unpacking r-bioc-xvector (0.46.0-2) ... 1064s Selecting previously unselected package r-bioc-ucsc.utils. 1064s Preparing to unpack .../183-r-bioc-ucsc.utils_1.2.0+ds-2_all.deb ... 1064s Unpacking r-bioc-ucsc.utils (1.2.0+ds-2) ... 1065s Selecting previously unselected package r-bioc-genomeinfodbdata. 1065s Preparing to unpack .../184-r-bioc-genomeinfodbdata_1.2.13-2_all.deb ... 1065s Unpacking r-bioc-genomeinfodbdata (1.2.13-2) ... 1065s Selecting previously unselected package r-bioc-genomeinfodb. 1065s Preparing to unpack .../185-r-bioc-genomeinfodb_1.42.3+dfsg-1_all.deb ... 1065s Unpacking r-bioc-genomeinfodb (1.42.3+dfsg-1) ... 1065s Selecting previously unselected package r-cran-crayon. 1065s Preparing to unpack .../186-r-cran-crayon_1.5.3-1_all.deb ... 1065s Unpacking r-cran-crayon (1.5.3-1) ... 1065s Selecting previously unselected package r-bioc-biostrings. 1065s Preparing to unpack .../187-r-bioc-biostrings_2.74.1+dfsg-2_arm64.deb ... 1065s Unpacking r-bioc-biostrings (2.74.1+dfsg-2) ... 1065s Selecting previously unselected package r-bioc-keggrest. 1065s Preparing to unpack .../188-r-bioc-keggrest_1.46.0+dfsg-3_all.deb ... 1065s Unpacking r-bioc-keggrest (1.46.0+dfsg-3) ... 1065s Selecting previously unselected package r-bioc-annotationdbi. 1065s Preparing to unpack .../189-r-bioc-annotationdbi_1.68.0-2_all.deb ... 1065s Unpacking r-bioc-annotationdbi (1.68.0-2) ... 1065s Selecting previously unselected package r-cran-xml. 1065s Preparing to unpack .../190-r-cran-xml_3.99-0.20-1_arm64.deb ... 1065s Unpacking r-cran-xml (3.99-0.20-1) ... 1065s Selecting previously unselected package r-cran-xtable. 1065s Preparing to unpack .../191-r-cran-xtable_1%3a1.8-4-2build1_all.deb ... 1065s Unpacking r-cran-xtable (1:1.8-4-2build1) ... 1065s Selecting previously unselected package r-bioc-annotate. 1065s Preparing to unpack .../192-r-bioc-annotate_1.84.0+dfsg-2_all.deb ... 1065s Unpacking r-bioc-annotate (1.84.0+dfsg-2) ... 1065s Selecting previously unselected package r-cran-formatr. 1065s Preparing to unpack .../193-r-cran-formatr_1.14-2_all.deb ... 1065s Unpacking r-cran-formatr (1.14-2) ... 1065s Selecting previously unselected package r-cran-lambda.r. 1065s Preparing to unpack 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.../199-r-cran-bh_1.84.0-1_all.deb ... 1065s Unpacking r-cran-bh (1.84.0-1) ... 1066s Selecting previously unselected package r-bioc-biocparallel. 1066s Preparing to unpack .../200-r-bioc-biocparallel_1.40.0-2_arm64.deb ... 1066s Unpacking r-bioc-biocparallel (1.40.0-2) ... 1066s Selecting previously unselected package r-cran-base64enc. 1066s Preparing to unpack .../201-r-cran-base64enc_0.1-3-3build1_arm64.deb ... 1066s Unpacking r-cran-base64enc (0.1-3-3build1) ... 1066s Selecting previously unselected package r-cran-digest. 1066s Preparing to unpack .../202-r-cran-digest_0.6.39-1_arm64.deb ... 1066s Unpacking r-cran-digest (0.6.39-1) ... 1066s Selecting previously unselected package r-cran-htmltools. 1066s Preparing to unpack .../203-r-cran-htmltools_0.5.8.1-1_arm64.deb ... 1066s Unpacking r-cran-htmltools (0.5.8.1-1) ... 1066s Selecting previously unselected package r-cran-evaluate. 1066s Preparing to unpack .../204-r-cran-evaluate_1.0.5-1_all.deb ... 1066s Unpacking r-cran-evaluate (1.0.5-1) ... 1066s Selecting previously unselected package r-cran-xfun. 1066s Preparing to unpack .../205-r-cran-xfun_0.55+dfsg-1_arm64.deb ... 1066s Unpacking r-cran-xfun (0.55+dfsg-1) ... 1066s Selecting previously unselected package r-cran-highr. 1066s Preparing to unpack .../206-r-cran-highr_0.11+dfsg-1_all.deb ... 1066s Unpacking r-cran-highr (0.11+dfsg-1) ... 1066s Selecting previously unselected package r-cran-yaml. 1066s Preparing to unpack .../207-r-cran-yaml_2.3.10-1_arm64.deb ... 1066s Unpacking r-cran-yaml (2.3.10-1) ... 1066s Selecting previously unselected package libjs-mathjax. 1066s Preparing to unpack .../208-libjs-mathjax_2.7.9+dfsg-1build1_all.deb ... 1066s Unpacking libjs-mathjax (2.7.9+dfsg-1build1) ... 1066s Selecting previously unselected package r-cran-knitr. 1066s Preparing to unpack .../209-r-cran-knitr_1.51+dfsg-1_all.deb ... 1066s Unpacking r-cran-knitr (1.51+dfsg-1) ... 1067s Selecting previously unselected package r-cran-jquerylib. 1067s Preparing to unpack .../210-r-cran-jquerylib_0.1.4+dfsg-5_all.deb ... 1067s Unpacking r-cran-jquerylib (0.1.4+dfsg-5) ... 1067s Selecting previously unselected package r-cran-fs. 1067s Preparing to unpack .../211-r-cran-fs_1.6.5+dfsg-1_arm64.deb ... 1067s Unpacking r-cran-fs (1.6.5+dfsg-1) ... 1067s Selecting previously unselected package r-cran-rappdirs. 1067s Preparing to unpack .../212-r-cran-rappdirs_0.3.3-1build1_arm64.deb ... 1067s Unpacking r-cran-rappdirs (0.3.3-1build1) ... 1067s Selecting previously unselected package r-cran-sass. 1067s Preparing to unpack .../213-r-cran-sass_0.4.9+dfsg-1_arm64.deb ... 1067s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 1067s Selecting previously unselected package r-cran-bslib. 1067s Preparing to unpack .../214-r-cran-bslib_0.9.0+dfsg-3build1_all.deb ... 1067s Unpacking r-cran-bslib (0.9.0+dfsg-3build1) ... 1067s Selecting previously unselected package r-cran-fontawesome. 1067s Preparing to unpack .../215-r-cran-fontawesome_0.5.3-1_all.deb ... 1067s Unpacking r-cran-fontawesome (0.5.3-1) ... 1067s Selecting previously unselected package r-cran-tinytex. 1067s Preparing to unpack .../216-r-cran-tinytex_0.58-1_all.deb ... 1067s Unpacking r-cran-tinytex (0.58-1) ... 1067s Selecting previously unselected package libjs-modernizr. 1067s Preparing to unpack .../217-libjs-modernizr_3.13.0-0.1build1_all.deb ... 1067s Unpacking libjs-modernizr (3.13.0-0.1build1) ... 1067s Selecting previously unselected package r-cran-littler. 1067s Preparing to unpack .../218-r-cran-littler_0.3.22-1_arm64.deb ... 1067s Unpacking r-cran-littler (0.3.22-1) ... 1067s Selecting previously unselected package r-cran-pkgkitten. 1067s Preparing to unpack .../219-r-cran-pkgkitten_0.2.4-1_all.deb ... 1067s Unpacking r-cran-pkgkitten (0.2.4-1) ... 1067s Selecting previously unselected package r-cran-rcpp. 1067s Preparing to unpack .../220-r-cran-rcpp_1.1.0-1_arm64.deb ... 1067s Unpacking r-cran-rcpp (1.1.0-1) ... 1067s Selecting previously unselected package r-cran-later. 1067s Preparing to unpack .../221-r-cran-later_1.4.1+dfsg-1_arm64.deb ... 1067s Unpacking r-cran-later (1.4.1+dfsg-1) ... 1067s Selecting previously unselected package r-cran-magrittr. 1067s Preparing to unpack .../222-r-cran-magrittr_2.0.3-1_arm64.deb ... 1067s Unpacking r-cran-magrittr (2.0.3-1) ... 1067s Selecting previously unselected package r-cran-promises. 1067s Preparing to unpack .../223-r-cran-promises_1.3.2+dfsg-1_arm64.deb ... 1067s Unpacking r-cran-promises (1.3.2+dfsg-1) ... 1067s Selecting previously unselected package r-cran-httpuv. 1067s Preparing to unpack .../224-r-cran-httpuv_1.6.15+dfsg-1_arm64.deb ... 1067s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 1067s Selecting previously unselected package r-cran-sourcetools. 1068s Preparing to unpack .../225-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 1068s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 1068s Selecting previously unselected package r-cran-withr. 1068s Preparing to unpack .../226-r-cran-withr_3.0.2+dfsg-1_all.deb ... 1068s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 1068s Selecting previously unselected package r-cran-commonmark. 1068s Preparing to unpack .../227-r-cran-commonmark_1.9.5-1_arm64.deb ... 1068s Unpacking r-cran-commonmark (1.9.5-1) ... 1068s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 1068s Preparing to unpack .../228-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 1068s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 1068s Selecting previously unselected package r-cran-shiny. 1068s Preparing to unpack .../229-r-cran-shiny_1.10.0+dfsg-2_all.deb ... 1068s Unpacking r-cran-shiny (1.10.0+dfsg-2) ... 1068s Selecting previously unselected package r-cran-rmarkdown. 1068s Preparing to unpack .../230-r-cran-rmarkdown_2.30+dfsg-1_all.deb ... 1068s Unpacking r-cran-rmarkdown (2.30+dfsg-1) ... 1068s Selecting previously unselected package r-cran-bookdown. 1068s Preparing to unpack .../231-r-cran-bookdown_0.42+dfsg-1_all.deb ... 1068s Unpacking r-cran-bookdown (0.42+dfsg-1) ... 1068s Selecting previously unselected package r-cran-biocmanager. 1068s Preparing to unpack .../232-r-cran-biocmanager_1.30.25+dfsg-1_all.deb ... 1068s Unpacking r-cran-biocmanager (1.30.25+dfsg-1) ... 1068s Selecting previously unselected package tex-common. 1068s Preparing to unpack .../233-tex-common_6.20_all.deb ... 1068s Unpacking tex-common (6.20) ... 1068s Selecting previously unselected package t1utils. 1068s Preparing to unpack .../234-t1utils_1.41-4build4_arm64.deb ... 1068s Unpacking t1utils (1.41-4build4) ... 1068s Selecting previously unselected package texlive-binaries. 1068s Preparing to unpack .../235-texlive-binaries_2025.20250727.75242+ds-5build1_arm64.deb ... 1068s Unpacking texlive-binaries (2025.20250727.75242+ds-5build1) ... 1068s Selecting previously unselected package texlive-base. 1069s Preparing to unpack .../236-texlive-base_2025.20260124-1_all.deb ... 1069s Unpacking texlive-base (2025.20260124-1) ... 1070s Selecting previously unselected package texlive-latex-base. 1070s Preparing to unpack .../237-texlive-latex-base_2025.20260124-1_all.deb ... 1070s Unpacking texlive-latex-base (2025.20260124-1) ... 1070s Selecting previously unselected package texlive-bibtex-extra. 1070s Preparing to unpack .../238-texlive-bibtex-extra_2025.20260124-1_all.deb ... 1070s Unpacking texlive-bibtex-extra (2025.20260124-1) ... 1072s Selecting previously unselected package r-bioc-biocversion. 1072s Preparing to unpack .../239-r-bioc-biocversion_3.20.0-2_all.deb ... 1072s Unpacking r-bioc-biocversion (3.20.0-2) ... 1072s Selecting previously unselected package r-bioc-biocstyle. 1072s Preparing to unpack .../240-r-bioc-biocstyle_2.34.0+dfsg-1_all.deb ... 1072s Unpacking r-bioc-biocstyle (2.34.0+dfsg-1) ... 1072s Selecting previously unselected package r-cran-plyr. 1072s Preparing to unpack .../241-r-cran-plyr_1.8.9-1_arm64.deb ... 1072s Unpacking r-cran-plyr (1.8.9-1) ... 1072s Selecting previously unselected package r-cran-lattice. 1072s Preparing to unpack .../242-r-cran-lattice_0.22-7-1_arm64.deb ... 1072s Unpacking r-cran-lattice (0.22-7-1) ... 1072s Selecting previously unselected package r-cran-matrix. 1073s Preparing to unpack .../243-r-cran-matrix_1.7-4-1_arm64.deb ... 1073s Unpacking r-cran-matrix (1.7-4-1) ... 1073s Selecting previously unselected package r-bioc-biomformat. 1073s Preparing to unpack .../244-r-bioc-biomformat_1.34.0+dfsg-2_all.deb ... 1073s Unpacking r-bioc-biomformat (1.34.0+dfsg-2) ... 1073s Selecting previously unselected package r-cran-matrixstats. 1073s Preparing to unpack .../245-r-cran-matrixstats_1.5.0-1_arm64.deb ... 1073s Unpacking r-cran-matrixstats (1.5.0-1) ... 1073s Selecting previously unselected package r-bioc-matrixgenerics. 1073s Preparing to unpack .../246-r-bioc-matrixgenerics_1.18.1-1_all.deb ... 1073s Unpacking r-bioc-matrixgenerics (1.18.1-1) ... 1073s Selecting previously unselected package r-cran-abind. 1073s Preparing to unpack .../247-r-cran-abind_1.4-8-1build1_all.deb ... 1073s Unpacking r-cran-abind (1.4-8-1build1) ... 1073s Selecting previously unselected package r-bioc-s4arrays. 1073s Preparing to unpack .../248-r-bioc-s4arrays_1.6.0+dfsg-2_arm64.deb ... 1073s Unpacking r-bioc-s4arrays (1.6.0+dfsg-2) ... 1073s Selecting previously unselected package r-bioc-sparsearray. 1073s Preparing to unpack .../249-r-bioc-sparsearray_1.6.2+dfsg-2_arm64.deb ... 1073s Unpacking r-bioc-sparsearray (1.6.2+dfsg-2) ... 1073s Selecting previously unselected package r-bioc-delayedarray. 1073s Preparing to unpack .../250-r-bioc-delayedarray_0.32.0+dfsg-2_arm64.deb ... 1073s Unpacking r-bioc-delayedarray (0.32.0+dfsg-2) ... 1073s Selecting previously unselected package r-bioc-genomicranges. 1073s Preparing to unpack .../251-r-bioc-genomicranges_1.58.0+dfsg-2_arm64.deb ... 1073s Unpacking r-bioc-genomicranges (1.58.0+dfsg-2) ... 1073s Selecting previously unselected package r-bioc-summarizedexperiment. 1073s Preparing to unpack .../252-r-bioc-summarizedexperiment_1.36.0+dfsg-2_all.deb ... 1073s Unpacking r-bioc-summarizedexperiment (1.36.0+dfsg-2) ... 1073s Selecting previously unselected package r-cran-locfit. 1073s Preparing to unpack .../253-r-cran-locfit_1.5-9.12-1_arm64.deb ... 1073s Unpacking r-cran-locfit (1.5-9.12-1) ... 1073s Selecting previously unselected package r-cran-gtable. 1073s Preparing to unpack .../254-r-cran-gtable_0.3.6+dfsg-1_all.deb ... 1073s Unpacking r-cran-gtable (0.3.6+dfsg-1) ... 1073s Selecting previously unselected package r-cran-isoband. 1073s Preparing to unpack .../255-r-cran-isoband_0.2.7-1_arm64.deb ... 1073s Unpacking r-cran-isoband (0.2.7-1) ... 1073s Selecting previously unselected package r-cran-s7. 1073s Preparing to unpack .../256-r-cran-s7_0.2.0-1_arm64.deb ... 1073s Unpacking r-cran-s7 (0.2.0-1) ... 1073s Selecting previously unselected package r-cran-farver. 1073s Preparing to unpack .../257-r-cran-farver_2.1.2-1_arm64.deb ... 1073s Unpacking r-cran-farver (2.1.2-1) ... 1073s Selecting previously unselected package r-cran-labeling. 1073s Preparing to unpack .../258-r-cran-labeling_0.4.3-1_all.deb ... 1073s Unpacking r-cran-labeling (0.4.3-1) ... 1073s Selecting previously unselected package r-cran-rcolorbrewer. 1073s Preparing to unpack .../259-r-cran-rcolorbrewer_1.1-3-1build2_all.deb ... 1073s Unpacking r-cran-rcolorbrewer (1.1-3-1build2) ... 1074s Selecting previously unselected package r-cran-viridislite. 1074s Preparing to unpack .../260-r-cran-viridislite_0.4.3-1_all.deb ... 1074s Unpacking r-cran-viridislite (0.4.3-1) ... 1074s Selecting previously unselected package r-cran-scales. 1074s Preparing to unpack .../261-r-cran-scales_1.4.0-1_all.deb ... 1074s Unpacking r-cran-scales (1.4.0-1) ... 1074s Selecting previously unselected package r-cran-ggplot2. 1074s Preparing to unpack .../262-r-cran-ggplot2_4.0.2+dfsg-1_all.deb ... 1074s Unpacking r-cran-ggplot2 (4.0.2+dfsg-1) ... 1074s Selecting previously unselected package r-cran-rcpparmadillo. 1074s Preparing to unpack .../263-r-cran-rcpparmadillo_15.2.3-1-1_arm64.deb ... 1074s Unpacking r-cran-rcpparmadillo (15.2.3-1-1) ... 1074s Selecting previously unselected package r-bioc-deseq2. 1074s Preparing to unpack .../264-r-bioc-deseq2_1.46.0+dfsg-2_arm64.deb ... 1074s Unpacking r-bioc-deseq2 (1.46.0+dfsg-2) ... 1074s Selecting previously unselected package r-cran-survival. 1074s Preparing to unpack .../265-r-cran-survival_3.8-6-1_arm64.deb ... 1074s Unpacking r-cran-survival (3.8-6-1) ... 1074s Selecting previously unselected package r-bioc-genefilter. 1074s Preparing to unpack .../266-r-bioc-genefilter_1.88.0-2_arm64.deb ... 1074s Unpacking r-bioc-genefilter (1.88.0-2) ... 1074s Selecting previously unselected package r-cran-statmod. 1074s Preparing to unpack .../267-r-cran-statmod_1.5.0-1_arm64.deb ... 1074s Unpacking r-cran-statmod (1.5.0-1) ... 1074s Selecting previously unselected package r-bioc-limma. 1074s Preparing to unpack .../268-r-bioc-limma_3.62.2+dfsg-1_arm64.deb ... 1074s Unpacking r-bioc-limma (3.62.2+dfsg-1) ... 1074s Selecting previously unselected package r-cran-iterators. 1074s Preparing to unpack .../269-r-cran-iterators_1.0.14-1build1_all.deb ... 1074s Unpacking r-cran-iterators (1.0.14-1build1) ... 1074s Selecting previously unselected package r-cran-foreach. 1074s Preparing to unpack .../270-r-cran-foreach_1.5.2-1build1_all.deb ... 1074s Unpacking r-cran-foreach (1.5.2-1build1) ... 1074s Selecting previously unselected package r-cran-shape. 1074s Preparing to unpack .../271-r-cran-shape_1.4.6.1-1_all.deb ... 1074s Unpacking r-cran-shape (1.4.6.1-1) ... 1074s Selecting previously unselected package r-cran-rcppeigen. 1075s Preparing to unpack .../272-r-cran-rcppeigen_0.3.4.0.2-1_arm64.deb ... 1075s Unpacking r-cran-rcppeigen (0.3.4.0.2-1) ... 1075s Selecting previously unselected package r-cran-glmnet. 1075s Preparing to unpack .../273-r-cran-glmnet_4.1-8-1_arm64.deb ... 1075s Unpacking r-cran-glmnet (4.1-8-1) ... 1075s Selecting previously unselected package r-cran-gtools. 1075s Preparing to unpack .../274-r-cran-gtools_3.9.5-1build1_arm64.deb ... 1075s Unpacking r-cran-gtools (3.9.5-1build1) ... 1075s Selecting previously unselected package r-cran-bitops. 1075s Preparing to unpack .../275-r-cran-bitops_1.0-9-1_arm64.deb ... 1075s Unpacking r-cran-bitops (1.0-9-1) ... 1075s Selecting previously unselected package r-cran-catools. 1075s Preparing to unpack .../276-r-cran-catools_1.18.3-1_arm64.deb ... 1075s Unpacking r-cran-catools (1.18.3-1) ... 1075s Selecting previously unselected package r-cran-mass. 1075s Preparing to unpack .../277-r-cran-mass_7.3-65-1_arm64.deb ... 1075s Unpacking r-cran-mass (7.3-65-1) ... 1075s Selecting previously unselected package r-cran-kernsmooth. 1075s Preparing to unpack .../278-r-cran-kernsmooth_2.23-26-1build1_arm64.deb ... 1075s Unpacking r-cran-kernsmooth (2.23-26-1build1) ... 1075s Selecting previously unselected package r-cran-gdata. 1075s Preparing to unpack .../279-r-cran-gdata_3.0.1-1build1_all.deb ... 1075s Unpacking r-cran-gdata (3.0.1-1build1) ... 1075s Selecting previously unselected package r-cran-gplots. 1075s Preparing to unpack .../280-r-cran-gplots_3.3.0-1_all.deb ... 1075s Unpacking r-cran-gplots (3.3.0-1) ... 1075s Selecting previously unselected package r-bioc-wrench. 1075s Preparing to unpack .../281-r-bioc-wrench_1.24.0+dfsg-2_all.deb ... 1075s Unpacking r-bioc-wrench (1.24.0+dfsg-2) ... 1075s Selecting previously unselected package r-bioc-metagenomeseq. 1075s Preparing to unpack .../282-r-bioc-metagenomeseq_1.48.1-1_all.deb ... 1075s Unpacking r-bioc-metagenomeseq (1.48.1-1) ... 1075s Selecting previously unselected package r-bioc-multtest. 1075s Preparing to unpack .../283-r-bioc-multtest_2.62.0-2_arm64.deb ... 1075s Unpacking r-bioc-multtest (2.62.0-2) ... 1075s Selecting previously unselected package r-cran-pixmap. 1075s Preparing to unpack .../284-r-cran-pixmap_0.4-14-1_all.deb 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unpack .../301-r-cran-processx_3.8.6-1_arm64.deb ... 1076s Unpacking r-cran-processx (3.8.6-1) ... 1077s Selecting previously unselected package r-cran-callr. 1077s Preparing to unpack .../302-r-cran-callr_3.7.6-1_all.deb ... 1077s Unpacking r-cran-callr (3.7.6-1) ... 1077s Selecting previously unselected package r-cran-desc. 1077s Preparing to unpack .../303-r-cran-desc_1.4.3-1_all.deb ... 1077s Unpacking r-cran-desc (1.4.3-1) ... 1077s Selecting previously unselected package r-cran-diffobj. 1077s Preparing to unpack .../304-r-cran-diffobj_0.3.5-1build1_arm64.deb ... 1077s Unpacking r-cran-diffobj (0.3.5-1build1) ... 1077s Selecting previously unselected package r-cran-pkgbuild. 1077s Preparing to unpack .../305-r-cran-pkgbuild_1.4.8-1_all.deb ... 1077s Unpacking r-cran-pkgbuild (1.4.8-1) ... 1077s Selecting previously unselected package r-cran-rprojroot. 1077s Preparing to unpack .../306-r-cran-rprojroot_2.1.1-1_all.deb ... 1077s Unpacking r-cran-rprojroot (2.1.1-1) ... 1077s 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(1.34.0+dfsg-2) ... 1083s Setting up r-cran-desc (1.4.3-1) ... 1083s Setting up r-cran-fontawesome (0.5.3-1) ... 1083s Setting up r-cran-survival (3.8-6-1) ... 1083s Setting up r-cran-igraph (2.1.4-1build1) ... 1083s Setting up r-cran-ade4 (1.7-23-1) ... 1083s Setting up r-cran-jquerylib (0.1.4+dfsg-5) ... 1083s Setting up texlive-bibtex-extra (2025.20260124-1) ... 1083s Setting up r-cran-reshape2 (1.4.4-2build2) ... 1083s Setting up r-cran-httr (1.4.7+dfsg-1) ... 1083s Setting up r-cran-memoise (2.0.1-1build1) ... 1083s Setting up r-cran-promises (1.3.2+dfsg-1) ... 1083s Setting up r-cran-vegan (2.6-10+dfsg-3) ... 1083s Setting up r-cran-blob (1.3.0-1) ... 1083s Setting up pkg-r-autopkgtest (20250812) ... 1083s Setting up r-bioc-xvector (0.46.0-2) ... 1083s Setting up r-cran-pkgbuild (1.4.8-1) ... 1083s Setting up r-cran-gplots (3.3.0-1) ... 1083s Setting up r-cran-rsqlite (2.3.9-1) ... 1083s Setting up r-cran-glmnet (4.1-8-1) ... 1083s Setting up r-bioc-multtest (2.62.0-2) ... 1083s Setting up r-cran-pkgload (1.4.1-1) ... 1083s Setting up r-bioc-ucsc.utils (1.2.0+ds-2) ... 1083s Setting up r-bioc-sparsearray (1.6.2+dfsg-2) ... 1083s Setting up r-cran-httpuv (1.6.15+dfsg-1) ... 1083s Setting up r-bioc-metagenomeseq (1.48.1-1) ... 1083s Setting up r-cran-testthat (3.2.3-1) ... 1083s Setting up r-bioc-genomeinfodb (1.42.3+dfsg-1) ... 1083s Setting up r-cran-bslib (0.9.0+dfsg-3build1) ... 1083s Setting up r-bioc-delayedarray (0.32.0+dfsg-2) ... 1083s Setting up r-bioc-genomicranges (1.58.0+dfsg-2) ... 1083s Setting up r-bioc-biostrings (2.74.1+dfsg-2) ... 1083s Setting up r-cran-shiny (1.10.0+dfsg-2) ... 1083s Setting up r-cran-rmarkdown (2.30+dfsg-1) ... 1083s Setting up r-cran-bookdown (0.42+dfsg-1) ... 1083s Setting up r-bioc-phyloseq (1.50.0+dfsg-2) ... 1083s Setting up r-bioc-summarizedexperiment (1.36.0+dfsg-2) ... 1083s Setting up r-bioc-keggrest (1.46.0+dfsg-3) ... 1083s Setting up r-bioc-deseq2 (1.46.0+dfsg-2) ... 1083s Setting up r-bioc-annotationdbi (1.68.0-2) ... 1083s Setting up r-bioc-annotate (1.84.0+dfsg-2) ... 1083s Setting up r-bioc-genefilter (1.88.0-2) ... 1083s Setting up r-bioc-biocstyle (2.34.0+dfsg-1) ... 1083s Processing triggers for libc-bin (2.42-2ubuntu4) ... 1083s Processing triggers for man-db (2.13.1-1build1) ... 1084s Processing triggers for install-info (7.2-5) ... 1084s Processing triggers for tex-common (6.20) ... 1084s Running updmap-sys. This may take some time... done. 1084s Running mktexlsr /var/lib/texmf ... done. 1084s Building format(s) --all. 1111s This may take some time... done. 1112s autopkgtest [23:38:59]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 1112s autopkgtest [23:38:59]: test pkg-r-autopkgtest: [----------------------- 1112s Test: Try to load the R library phyloseq 1112s 1112s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 1112s Copyright (C) 2025 The R Foundation for Statistical Computing 1112s Platform: aarch64-unknown-linux-gnu 1112s 1112s R is free software and comes with ABSOLUTELY NO WARRANTY. 1112s You are welcome to redistribute it under certain conditions. 1112s Type 'license()' or 'licence()' for distribution details. 1112s 1112s R is a collaborative project with many contributors. 1112s Type 'contributors()' for more information and 1112s 'citation()' on how to cite R or R packages in publications. 1112s 1112s Type 'demo()' for some demos, 'help()' for on-line help, or 1112s 'help.start()' for an HTML browser interface to help. 1112s Type 'q()' to quit R. 1112s 1112s > library('phyloseq') 1117s > 1117s Test: Run tests for phyloseq 1117s Start: testthat-phyloseq.R 1117s 1117s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 1117s Copyright (C) 2025 The R Foundation for Statistical Computing 1117s Platform: aarch64-unknown-linux-gnu 1117s 1117s R is free software and comes with ABSOLUTELY NO WARRANTY. 1117s You are welcome to redistribute it under certain conditions. 1117s Type 'license()' or 'licence()' for distribution details. 1117s 1117s R is a collaborative project with many contributors. 1117s Type 'contributors()' for more information and 1117s 'citation()' on how to cite R or R packages in publications. 1117s 1117s Type 'demo()' for some demos, 'help()' for on-line help, or 1117s 'help.start()' for an HTML browser interface to help. 1117s Type 'q()' to quit R. 1117s 1117s > library("testthat") 1117s > packageVersion("phyloseq") 1117s [1] ‘1.50.0’ 1117s > # As suggested for opt-out option on testing by users, recommended by CRAN 1117s > # http://adv-r.had.co.nz/Testing.html 1117s > # Previously, best practice was to put all test files in inst/tests and ensure that R CMD check ran them by putting the following code in tests/test-all.R: 1117s > # library(testthat) 1117s > # library(yourpackage) 1117s > # test_package("yourpackage") 1117s > # Now, recommended practice is to put your tests in tests/testthat, and ensure R CMD check runs them by putting the following code in tests/test-all.R: 1117s > # library(testthat) 1117s > # test_check("yourpackage") 1117s > # The advantage of this new structure is that the user has control over whether or not tests are installed using the –install-tests parameter to R CMD install, or INSTALL_opts = c(“–install-tests”) argument to install.packages(). I’m not sure why you wouldn’t want to install the tests, but now you have the flexibility as requested by CRAN maintainers. 1117s > test_check("phyloseq") 1117s Loading required package: phyloseq 1123s Processing otu/tax file... 1123s Reading file into memory prior to parsing... 1123s Detecting first header line... 1123s Header is on line 2 1123s Converting input file to a table... 1123s Defining OTU table... 1123s Parsing taxonomy table... 1124s Processing phylogenetic tree... 1124s /usr/lib/R/site-library/phyloseq/extdata/GP_tree_rand_short.newick.gz ... 1130s Found biom-format file, now parsing it... 1130s Done parsing biom... 1130s Importing Sample Metdadata from mapping file... 1130s Merging the imported objects... 1130s Successfully merged, phyloseq-class created. 1130s Returning... 1130s Found biom-format file, now parsing it... 1130s Done parsing biom... 1130s Importing Sample Metdadata from mapping file... 1130s Merging the imported objects... 1130s Successfully merged, phyloseq-class created. 1130s Returning... 1130s Reading `ucfile` into memory and parsing into table 1130s Initially read 100 entries. 1130s ... Now removing unassigned OTUs (* or NA)... 1130s Removed 7 entries that had no OTU assignment. 1130s A total of 93 will be assigned to the OTU table. 1136s Processing map file... 1136s Processing otu/tax file... 1136s Reading file into memory prior to parsing... 1136s Detecting first header line... 1136s Header is on line 2 1136s Converting input file to a table... 1136s Defining OTU table... 1136s Parsing taxonomy table... 1137s Processing phylogenetic tree... 1137s /usr/lib/R/site-library/phyloseq/extdata/GP_tree_rand_short.newick.gz ... 1137s Processing Reference Sequences... 1170s [ FAIL 0 | WARN 51 | SKIP 0 | PASS 604 ] 1170s 1170s [ FAIL 0 | WARN 51 | SKIP 0 | PASS 604 ] 1171s > 1171s autopkgtest [23:39:58]: test pkg-r-autopkgtest: -----------------------] 1171s autopkgtest [23:39:58]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 1171s pkg-r-autopkgtest PASS 1172s autopkgtest [23:39:59]: @@@@@@@@@@@@@@@@@@@@ summary 1172s pkg-r-autopkgtest PASS