0s autopkgtest [23:19:17]: starting date and time: 2026-02-09 23:19:17+0000 0s autopkgtest [23:19:17]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [23:19:17]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.8ly6koft/out --timeout-copy=6000 --needs-internet=try --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-cran-ggplot2 --apt-upgrade r-bioc-mutationalpatterns --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-cran-ggplot2/4.0.2+dfsg-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-arm64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@sto01-arm64-18.secgroup --name adt-resolute-arm64-r-bioc-mutationalpatterns-20260209-231917-juju-7f2275-prod-proposed-migration-environment-20-7ccc738d-e25e-4827-89df-a5c7bd627df8 --image adt/ubuntu-resolute-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-autopkgtest-workers-arm64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 3s Creating nova instance adt-resolute-arm64-r-bioc-mutationalpatterns-20260209-231917-juju-7f2275-prod-proposed-migration-environment-20-7ccc738d-e25e-4827-89df-a5c7bd627df8 from image adt/ubuntu-resolute-arm64-server-20260209.img (UUID 793037ca-75af-461b-82de-f8081300b2e3)... 134s autopkgtest [23:21:31]: testbed dpkg architecture: arm64 134s autopkgtest [23:21:31]: testbed apt version: 3.1.15 134s autopkgtest [23:21:31]: @@@@@@@@@@@@@@@@@@@@ test bed setup 134s autopkgtest [23:21:31]: testbed release detected to be: None 135s autopkgtest [23:21:32]: updating testbed package index (apt update) 135s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 136s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 136s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 136s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 136s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [29.4 kB] 136s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [176 kB] 136s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1645 kB] 139s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 Packages [246 kB] 139s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 c-n-f Metadata [6216 B] 139s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 c-n-f Metadata [304 B] 139s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 Packages [1580 kB] 141s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 c-n-f Metadata [32.0 kB] 141s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 Packages [21.7 kB] 141s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 c-n-f Metadata [688 B] 143s Fetched 3862 kB in 6s (628 kB/s) 143s Reading package lists... 144s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 144s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 144s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 144s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 145s Reading package lists... 145s Reading package lists... 145s Building dependency tree... 145s Reading state information... 145s Calculating upgrade... 146s The following packages will be upgraded: 146s cryptsetup-bin dracut-install iproute2 iptables libcryptsetup12 libip4tc2 146s libip6tc2 libxtables12 wget 146s 9 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 146s Need to get 2534 kB of archives. 146s After this operation, 18.4 kB of additional disk space will be used. 146s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 iptables arm64 1.8.11-2ubuntu3 [386 kB] 146s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 libip4tc2 arm64 1.8.11-2ubuntu3 [24.3 kB] 146s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 libip6tc2 arm64 1.8.11-2ubuntu3 [24.7 kB] 146s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 libxtables12 arm64 1.8.11-2ubuntu3 [36.7 kB] 146s Get:5 http://ftpmaster.internal/ubuntu resolute/main arm64 iproute2 arm64 6.18.0-1ubuntu1 [1171 kB] 148s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 libcryptsetup12 arm64 2:2.8.0-1ubuntu3 [274 kB] 148s Get:7 http://ftpmaster.internal/ubuntu resolute/main arm64 wget arm64 1.25.0-2ubuntu4 [344 kB] 148s Get:8 http://ftpmaster.internal/ubuntu resolute/main arm64 cryptsetup-bin arm64 2:2.8.0-1ubuntu3 [227 kB] 148s Get:9 http://ftpmaster.internal/ubuntu resolute/main arm64 dracut-install arm64 109-11ubuntu1 [45.3 kB] 148s dpkg-preconfigure: unable to re-open stdin: No such file or directory 148s Fetched 2534 kB in 2s (1101 kB/s) 149s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 136597 files and directories currently installed.) 149s Preparing to unpack .../0-iptables_1.8.11-2ubuntu3_arm64.deb ... 149s Unpacking iptables (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 149s Preparing to unpack .../1-libip4tc2_1.8.11-2ubuntu3_arm64.deb ... 149s Unpacking libip4tc2:arm64 (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 149s Preparing to unpack .../2-libip6tc2_1.8.11-2ubuntu3_arm64.deb ... 149s Unpacking libip6tc2:arm64 (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 149s Preparing to unpack .../3-libxtables12_1.8.11-2ubuntu3_arm64.deb ... 149s Unpacking libxtables12:arm64 (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 149s Preparing to unpack .../4-iproute2_6.18.0-1ubuntu1_arm64.deb ... 150s Unpacking iproute2 (6.18.0-1ubuntu1) over (6.16.0-1ubuntu3) ... 150s Preparing to unpack .../5-libcryptsetup12_2%3a2.8.0-1ubuntu3_arm64.deb ... 150s Unpacking libcryptsetup12:arm64 (2:2.8.0-1ubuntu3) over (2:2.8.0-1ubuntu2) ... 150s Preparing to unpack .../6-wget_1.25.0-2ubuntu4_arm64.deb ... 150s Unpacking wget (1.25.0-2ubuntu4) over (1.25.0-2ubuntu3) ... 150s Preparing to unpack .../7-cryptsetup-bin_2%3a2.8.0-1ubuntu3_arm64.deb ... 150s Unpacking cryptsetup-bin (2:2.8.0-1ubuntu3) over (2:2.8.0-1ubuntu2) ... 150s Preparing to unpack .../8-dracut-install_109-11ubuntu1_arm64.deb ... 150s Unpacking dracut-install (109-11ubuntu1) over (109-9ubuntu1) ... 150s Setting up libip4tc2:arm64 (1.8.11-2ubuntu3) ... 150s Setting up wget (1.25.0-2ubuntu4) ... 150s Setting up libip6tc2:arm64 (1.8.11-2ubuntu3) ... 150s Setting up libxtables12:arm64 (1.8.11-2ubuntu3) ... 150s Setting up dracut-install (109-11ubuntu1) ... 150s Setting up libcryptsetup12:arm64 (2:2.8.0-1ubuntu3) ... 150s Setting up cryptsetup-bin (2:2.8.0-1ubuntu3) ... 150s Setting up iptables (1.8.11-2ubuntu3) ... 150s Setting up iproute2 (6.18.0-1ubuntu1) ... 150s Processing triggers for man-db (2.13.1-1build1) ... 151s Processing triggers for install-info (7.2-5) ... 151s Processing triggers for libc-bin (2.42-2ubuntu4) ... 151s autopkgtest [23:21:48]: upgrading testbed (apt dist-upgrade and autopurge) 151s Reading package lists... 151s Building dependency tree... 151s Reading state information... 152s Calculating upgrade... 152s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 152s Reading package lists... 152s Building dependency tree... 152s Reading state information... 153s Solving dependencies... 153s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 156s autopkgtest [23:21:52]: testbed running kernel: Linux 6.19.0-3-generic #3-Ubuntu SMP PREEMPT_DYNAMIC Fri Jan 23 19:46:27 UTC 2026 156s autopkgtest [23:21:53]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-mutationalpatterns 160s Get:1 http://ftpmaster.internal/ubuntu resolute/universe r-bioc-mutationalpatterns 3.16.0+dfsg-2 (dsc) [2595 B] 160s Get:2 http://ftpmaster.internal/ubuntu resolute/universe r-bioc-mutationalpatterns 3.16.0+dfsg-2 (tar) [1925 kB] 160s Get:3 http://ftpmaster.internal/ubuntu resolute/universe r-bioc-mutationalpatterns 3.16.0+dfsg-2 (diff) [3564 B] 160s gpgv: Signature made Tue Jan 14 07:53:19 2025 UTC 160s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 160s gpgv: issuer "crusoe@debian.org" 160s gpgv: Can't check signature: No public key 160s dpkg-source: warning: cannot verify inline signature for ./r-bioc-mutationalpatterns_3.16.0+dfsg-2.dsc: no acceptable signature found 161s autopkgtest [23:21:58]: testing package r-bioc-mutationalpatterns version 3.16.0+dfsg-2 161s autopkgtest [23:21:58]: build not needed 163s autopkgtest [23:22:00]: test pkg-r-autopkgtest: preparing testbed 163s Reading package lists... 163s Building dependency tree... 163s Reading state information... 164s Solving dependencies... 164s The following NEW packages will be installed: 164s build-essential cpp cpp-15 cpp-15-aarch64-linux-gnu cpp-aarch64-linux-gnu 164s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 164s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 164s g++ g++-15 g++-15-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-15 164s gcc-15-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-15 164s gfortran-15-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 164s javascript-common libasan8 libbibtex-parser-perl libblas-dev libblas3 164s libboost-dev libboost1.90-dev libbz2-dev libc-dev-bin libc6-dev libcairo2 164s libcc1-0 libcrypt-dev libdatrie1 libdeflate-dev libdeflate0 libfontconfig1 164s libgcc-15-dev libgfortran-15-dev libgfortran5 libgomp1 libgraphite2-3 164s libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl libisl23 164s libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 164s libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim 164s libjs-highlight.js libjs-jquery libjs-jquery-datatables 164s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 164s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 164s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 164s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblerc4 164s liblsan0 liblua5.4-0 liblzma-dev libmpc3 libmpfi0 libncurses-dev 164s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 164s libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 164s libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1 libreadline-dev 164s libsharpyuv0 libsm6 libstdc++-15-dev libsynctex2 libtcl8.6 libteckit0 164s libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 164s libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 164s libxpm4 libxrender1 libxss1 libxt6t64 libzstd-dev libzzip-0-13t64 164s linux-libc-dev node-bootstrap-sass node-html5shiv node-normalize.css pandoc 164s pandoc-data pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 164s r-bioc-annotationdbi r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics 164s r-bioc-biocio r-bioc-biocparallel r-bioc-biocstyle r-bioc-biocversion 164s r-bioc-biomart r-bioc-biostrings r-bioc-bsgenome r-bioc-delayedarray 164s r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments 164s r-bioc-genomicfeatures r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest 164s r-bioc-matrixgenerics r-bioc-mutationalpatterns r-bioc-rhtslib 164s r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors 164s r-bioc-sparsearray r-bioc-summarizedexperiment r-bioc-ucsc.utils 164s r-bioc-variantannotation r-bioc-xvector r-bioc-zlibbioc r-cran-abind 164s r-cran-askpass r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit 164s r-cran-bit64 r-cran-bitops r-cran-blob r-cran-bookdown r-cran-brio 164s r-cran-bslib r-cran-cachem r-cran-callr r-cran-cli r-cran-cluster 164s r-cran-codetools r-cran-colorspace r-cran-commonmark r-cran-cowplot 164s r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-desc 164s r-cran-diffobj r-cran-digest r-cran-doparallel r-cran-dplyr r-cran-evaluate 164s r-cran-fansi r-cran-farver r-cran-fastmap r-cran-filelock r-cran-fontawesome 164s r-cran-foreach r-cran-formatr r-cran-fs r-cran-futile.logger 164s r-cran-futile.options r-cran-generics r-cran-ggalluvial r-cran-ggdendro 164s r-cran-ggplot2 r-cran-glue r-cran-gridbase r-cran-gridextra r-cran-gtable 164s r-cran-highr r-cran-hms r-cran-htmltools r-cran-httpuv r-cran-httr 164s r-cran-httr2 r-cran-isoband r-cran-iterators r-cran-jquerylib 164s r-cran-jsonlite r-cran-knitr r-cran-labeling r-cran-lambda.r r-cran-later 164s r-cran-lattice r-cran-lazyeval r-cran-lifecycle r-cran-littler 164s r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-memoise 164s r-cran-mime r-cran-nmf r-cran-openssl r-cran-pillar r-cran-pkgbuild 164s r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-plyr 164s r-cran-png r-cran-pracma r-cran-praise r-cran-prettyunits r-cran-processx 164s r-cran-progress r-cran-promises r-cran-ps r-cran-purrr r-cran-r6 164s r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl r-cran-registry 164s r-cran-reshape2 r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown 164s r-cran-rngtools r-cran-rprojroot r-cran-rsqlite r-cran-s7 r-cran-sass 164s r-cran-scales r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-stringi 164s r-cran-stringr r-cran-sys r-cran-testthat r-cran-tibble r-cran-tidyr 164s r-cran-tidyselect r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-viridislite 164s r-cran-waldo r-cran-withr r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable 164s r-cran-yaml rpcsvc-proto t1utils tex-common texlive-base 164s texlive-bibtex-extra texlive-binaries texlive-latex-base unzip x11-common 164s xdg-utils zip zlib1g-dev 164s 0 upgraded, 317 newly installed, 0 to remove and 0 not upgraded. 164s Need to get 470 MB of archives. 164s After this operation, 1443 MB of additional disk space will be used. 164s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 libc-dev-bin arm64 2.42-2ubuntu4 [22.5 kB] 164s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 linux-libc-dev arm64 6.19.0-3.3 [1819 kB] 169s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 libcrypt-dev arm64 1:4.5.1-1 [123 kB] 169s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 rpcsvc-proto arm64 1.4.3-1build1 [65.6 kB] 169s Get:5 http://ftpmaster.internal/ubuntu resolute/main arm64 libc6-dev arm64 2.42-2ubuntu4 [1765 kB] 173s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 libisl23 arm64 0.27-1build1 [676 kB] 175s Get:7 http://ftpmaster.internal/ubuntu resolute/main arm64 libmpc3 arm64 1.3.1-2 [55.6 kB] 175s Get:8 http://ftpmaster.internal/ubuntu resolute/main arm64 cpp-15-aarch64-linux-gnu arm64 15.2.0-12ubuntu1 [11.7 MB] 196s Get:9 http://ftpmaster.internal/ubuntu resolute/main arm64 cpp-15 arm64 15.2.0-12ubuntu1 [1030 B] 196s Get:10 http://ftpmaster.internal/ubuntu resolute/main arm64 cpp-aarch64-linux-gnu arm64 4:15.2.0-4ubuntu1 [5736 B] 196s Get:11 http://ftpmaster.internal/ubuntu resolute/main arm64 cpp arm64 4:15.2.0-4ubuntu1 [22.4 kB] 196s Get:12 http://ftpmaster.internal/ubuntu resolute/main arm64 libcc1-0 arm64 15.2.0-12ubuntu1 [49.0 kB] 196s Get:13 http://ftpmaster.internal/ubuntu resolute/main arm64 libgomp1 arm64 15.2.0-12ubuntu1 [147 kB] 197s Get:14 http://ftpmaster.internal/ubuntu resolute/main arm64 libitm1 arm64 15.2.0-12ubuntu1 [27.8 kB] 197s Get:15 http://ftpmaster.internal/ubuntu resolute/main arm64 libasan8 arm64 15.2.0-12ubuntu1 [2920 kB] 210s Get:16 http://ftpmaster.internal/ubuntu resolute/main arm64 liblsan0 arm64 15.2.0-12ubuntu1 [1316 kB] 214s Get:17 http://ftpmaster.internal/ubuntu resolute/main arm64 libtsan2 arm64 15.2.0-12ubuntu1 [2688 kB] 221s Get:18 http://ftpmaster.internal/ubuntu resolute/main arm64 libubsan1 arm64 15.2.0-12ubuntu1 [1175 kB] 223s Get:19 http://ftpmaster.internal/ubuntu resolute/main arm64 libhwasan0 arm64 15.2.0-12ubuntu1 [1638 kB] 226s Get:20 http://ftpmaster.internal/ubuntu resolute/main arm64 libgcc-15-dev arm64 15.2.0-12ubuntu1 [2600 kB] 231s Get:21 http://ftpmaster.internal/ubuntu resolute/main arm64 gcc-15-aarch64-linux-gnu arm64 15.2.0-12ubuntu1 [23.1 MB] 272s Get:22 http://ftpmaster.internal/ubuntu resolute/main arm64 gcc-15 arm64 15.2.0-12ubuntu1 [519 kB] 272s Get:23 http://ftpmaster.internal/ubuntu resolute/main arm64 gcc-aarch64-linux-gnu arm64 4:15.2.0-4ubuntu1 [1206 B] 272s Get:24 http://ftpmaster.internal/ubuntu resolute/main arm64 gcc arm64 4:15.2.0-4ubuntu1 [5016 B] 272s Get:25 http://ftpmaster.internal/ubuntu resolute/main arm64 libstdc++-15-dev arm64 15.2.0-12ubuntu1 [2549 kB] 276s Get:26 http://ftpmaster.internal/ubuntu resolute/main arm64 g++-15-aarch64-linux-gnu arm64 15.2.0-12ubuntu1 [13.2 MB] 299s Get:27 http://ftpmaster.internal/ubuntu resolute/main arm64 g++-15 arm64 15.2.0-12ubuntu1 [25.3 kB] 299s Get:28 http://ftpmaster.internal/ubuntu resolute/main arm64 g++-aarch64-linux-gnu arm64 4:15.2.0-4ubuntu1 [956 B] 299s Get:29 http://ftpmaster.internal/ubuntu resolute/main arm64 g++ arm64 4:15.2.0-4ubuntu1 [1080 B] 299s Get:30 http://ftpmaster.internal/ubuntu resolute/main arm64 build-essential arm64 12.12ubuntu2 [5254 B] 299s Get:31 http://ftpmaster.internal/ubuntu resolute/main arm64 dctrl-tools arm64 2.24-3build4 [102 kB] 299s Get:32 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-mono all 2.37-8build1 [502 kB] 300s Get:33 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-core all 2.37-8build1 [834 kB] 301s Get:34 http://ftpmaster.internal/ubuntu resolute/main arm64 fontconfig-config arm64 2.17.1-3ubuntu1 [38.5 kB] 301s Get:35 http://ftpmaster.internal/ubuntu resolute/main arm64 libfontconfig1 arm64 2.17.1-3ubuntu1 [144 kB] 301s Get:36 http://ftpmaster.internal/ubuntu resolute/main arm64 fontconfig arm64 2.17.1-3ubuntu1 [181 kB] 301s Get:37 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1build1 [531 kB] 302s Get:38 http://ftpmaster.internal/ubuntu resolute/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-6 [119 kB] 302s Get:39 http://ftpmaster.internal/ubuntu resolute/universe arm64 fonts-lmodern all 2.005-1build1 [4788 kB] 309s Get:40 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-mathjax all 2.7.9+dfsg-1build1 [2283 kB] 313s Get:41 http://ftpmaster.internal/ubuntu resolute/main arm64 libgfortran5 arm64 15.2.0-12ubuntu1 [451 kB] 313s Get:42 http://ftpmaster.internal/ubuntu resolute/main arm64 libgfortran-15-dev arm64 15.2.0-12ubuntu1 [490 kB] 313s Get:43 http://ftpmaster.internal/ubuntu resolute/main arm64 gfortran-15-aarch64-linux-gnu arm64 15.2.0-12ubuntu1 [12.5 MB] 333s Get:44 http://ftpmaster.internal/ubuntu resolute/main arm64 gfortran-15 arm64 15.2.0-12ubuntu1 [18.1 kB] 333s Get:45 http://ftpmaster.internal/ubuntu resolute/main arm64 gfortran-aarch64-linux-gnu arm64 4:15.2.0-4ubuntu1 [1022 B] 333s Get:46 http://ftpmaster.internal/ubuntu resolute/main arm64 gfortran arm64 4:15.2.0-4ubuntu1 [1160 B] 333s Get:47 http://ftpmaster.internal/ubuntu resolute/main arm64 icu-devtools arm64 78.2-1ubuntu1 [207 kB] 333s Get:48 http://ftpmaster.internal/ubuntu resolute/main arm64 javascript-common all 12+nmu1build1 [4864 B] 333s Get:49 http://ftpmaster.internal/ubuntu resolute/main arm64 libio-string-perl all 1.08-4 [11.1 kB] 333s Get:50 http://ftpmaster.internal/ubuntu resolute/universe arm64 liblatex-tounicode-perl all 1.93-1 [29.2 kB] 333s Get:51 http://ftpmaster.internal/ubuntu resolute/universe arm64 libbibtex-parser-perl all 1.93+dfsg-1 [17.4 kB] 333s Get:52 http://ftpmaster.internal/ubuntu resolute/main arm64 libblas3 arm64 3.12.1-7ubuntu1 [181 kB] 333s Get:53 http://ftpmaster.internal/ubuntu resolute/main arm64 libblas-dev arm64 3.12.1-7ubuntu1 [160 kB] 333s Get:54 http://ftpmaster.internal/ubuntu resolute/main arm64 libboost1.90-dev arm64 1.90.0-2ubuntu1 [11.5 MB] 355s Get:55 http://ftpmaster.internal/ubuntu resolute/main arm64 libboost-dev arm64 1.90.0.0ubuntu3 [4764 B] 355s Get:56 http://ftpmaster.internal/ubuntu resolute/main arm64 libbz2-dev arm64 1.0.8-6build2 [34.9 kB] 355s Get:57 http://ftpmaster.internal/ubuntu resolute/main arm64 libpixman-1-0 arm64 0.46.4-1 [204 kB] 355s Get:58 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-render0 arm64 1.17.0-2ubuntu1 [16.4 kB] 355s Get:59 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-shm0 arm64 1.17.0-2ubuntu1 [5938 B] 355s Get:60 http://ftpmaster.internal/ubuntu resolute/main arm64 libxrender1 arm64 1:0.9.12-1 [19.5 kB] 356s Get:61 http://ftpmaster.internal/ubuntu resolute/main arm64 libcairo2 arm64 1.18.4-3 [556 kB] 357s Get:62 http://ftpmaster.internal/ubuntu resolute/main arm64 libdatrie1 arm64 0.2.14-1 [19.6 kB] 357s Get:63 http://ftpmaster.internal/ubuntu resolute/main arm64 libdeflate0 arm64 1.23-2build1 [46.8 kB] 357s Get:64 http://ftpmaster.internal/ubuntu resolute/main arm64 libdeflate-dev arm64 1.23-2build1 [54.3 kB] 357s Get:65 http://ftpmaster.internal/ubuntu resolute/main arm64 libgraphite2-3 arm64 1.3.14-11ubuntu1 [72.1 kB] 357s Get:66 http://ftpmaster.internal/ubuntu resolute/main arm64 libharfbuzz0b arm64 12.3.2-1 [510 kB] 357s Get:67 http://ftpmaster.internal/ubuntu resolute/main arm64 x11-common all 1:7.7+24ubuntu1 [22.4 kB] 357s Get:68 http://ftpmaster.internal/ubuntu resolute/main arm64 libice6 arm64 2:1.1.1-1build1 [43.0 kB] 357s Get:69 http://ftpmaster.internal/ubuntu resolute/main arm64 libicu-dev arm64 78.2-1ubuntu1 [12.5 MB] 386s Get:70 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg-turbo8 arm64 2.1.5-4ubuntu3 [161 kB] 386s Get:71 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg-turbo8-dev arm64 2.1.5-4ubuntu3 [301 kB] 386s Get:72 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 386s Get:73 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 386s Get:74 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 386s Get:75 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-bootstrap all 3.4.1+dfsg-6 [129 kB] 386s Get:76 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-popper.js all 1.16.1+ds-6build1 [53.8 kB] 386s Get:77 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-bootstrap4 all 4.6.2+dfsg-1 [532 kB] 387s Get:78 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-d3 all 3.5.17-4build1 [136 kB] 387s Get:79 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 387s Get:80 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-highlight.js all 10.7.3+dfsg-2 [144 kB] 387s Get:81 http://ftpmaster.internal/ubuntu resolute/main arm64 libjs-jquery all 3.7.1+dfsg+~3.5.33-1build1 [321 kB] 387s Get:82 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2build1 [145 kB] 387s Get:83 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 387s Get:84 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-2 [3946 B] 387s Get:85 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 387s Get:86 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1build1 [251 kB] 387s Get:87 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-json all 0~20221030+~1.0.8-1build1 [20.6 kB] 387s Get:88 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 387s Get:89 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-prettify all 2015.12.04+dfsg-3 [41.4 kB] 387s Get:90 http://ftpmaster.internal/ubuntu resolute/universe arm64 libkpathsea6 arm64 2025.20250727.75242+ds-5build1 [65.4 kB] 387s Get:91 http://ftpmaster.internal/ubuntu resolute/main arm64 liblapack3 arm64 3.12.1-7ubuntu1 [2299 kB] 391s Get:92 http://ftpmaster.internal/ubuntu resolute/main arm64 liblapack-dev arm64 3.12.1-7ubuntu1 [4456 kB] 400s Get:93 http://ftpmaster.internal/ubuntu resolute/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu2 [174 kB] 400s Get:94 http://ftpmaster.internal/ubuntu resolute/main arm64 liblua5.4-0 arm64 5.4.8-1 [171 kB] 400s Get:95 http://ftpmaster.internal/ubuntu resolute/universe arm64 libmpfi0 arm64 1.5.4+ds-4build1 [36.4 kB] 400s Get:96 http://ftpmaster.internal/ubuntu resolute/main arm64 libncurses-dev arm64 6.6+20251231-1 [391 kB] 400s Get:97 http://ftpmaster.internal/ubuntu resolute/main arm64 libthai-data all 0.1.30-1 [155 kB] 400s Get:98 http://ftpmaster.internal/ubuntu resolute/main arm64 libthai0 arm64 0.1.30-1 [18.3 kB] 400s Get:99 http://ftpmaster.internal/ubuntu resolute/main arm64 libpango-1.0-0 arm64 1.57.0-1 [238 kB] 400s Get:100 http://ftpmaster.internal/ubuntu resolute/main arm64 libpangoft2-1.0-0 arm64 1.57.0-1 [51.5 kB] 400s Get:101 http://ftpmaster.internal/ubuntu resolute/main arm64 libpangocairo-1.0-0 arm64 1.57.0-1 [27.9 kB] 400s Get:102 http://ftpmaster.internal/ubuntu resolute/main arm64 libpaper2 arm64 2.2.5-0.3build1 [17.3 kB] 400s Get:103 http://ftpmaster.internal/ubuntu resolute/main arm64 libpaper-utils arm64 2.2.5-0.3build1 [15.4 kB] 400s Get:104 http://ftpmaster.internal/ubuntu resolute/main arm64 libpcre2-16-0 arm64 10.46-1 [225 kB] 400s Get:105 http://ftpmaster.internal/ubuntu resolute/main arm64 libpcre2-32-0 arm64 10.46-1 [213 kB] 400s Get:106 http://ftpmaster.internal/ubuntu resolute/main arm64 libpcre2-posix3 arm64 10.46-1 [7300 B] 400s Get:107 http://ftpmaster.internal/ubuntu resolute/main arm64 libpcre2-dev arm64 10.46-1 [772 kB] 400s Get:108 http://ftpmaster.internal/ubuntu resolute/main arm64 libpkgconf3 arm64 1.8.1-4build1 [33.7 kB] 400s Get:109 http://ftpmaster.internal/ubuntu resolute/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu2 [899 kB] 401s Get:110 http://ftpmaster.internal/ubuntu resolute/main arm64 libpng-dev arm64 1.6.54-1 [268 kB] 401s Get:111 http://ftpmaster.internal/ubuntu resolute/universe arm64 libpotrace0 arm64 1.16-2build2 [16.3 kB] 401s Get:112 http://ftpmaster.internal/ubuntu resolute/universe arm64 libptexenc1 arm64 2025.20250727.75242+ds-5build1 [46.2 kB] 401s Get:113 http://ftpmaster.internal/ubuntu resolute/main arm64 libreadline-dev arm64 8.3-3 [199 kB] 401s Get:114 http://ftpmaster.internal/ubuntu resolute/main arm64 libsharpyuv0 arm64 1.5.0-0.1build1 [16.7 kB] 401s Get:115 http://ftpmaster.internal/ubuntu resolute/main arm64 libsm6 arm64 2:1.2.6-1build1 [16.8 kB] 401s Get:116 http://ftpmaster.internal/ubuntu resolute/universe arm64 libsynctex2 arm64 2025.20250727.75242+ds-5build1 [61.4 kB] 401s Get:117 http://ftpmaster.internal/ubuntu resolute/main arm64 libtcl8.6 arm64 8.6.17+dfsg-1build1 [983 kB] 403s Get:118 http://ftpmaster.internal/ubuntu resolute/universe arm64 libteckit0 arm64 2.5.13+ds-1 [393 kB] 403s Get:119 http://ftpmaster.internal/ubuntu resolute/universe arm64 libtexlua53-5 arm64 2025.20250727.75242+ds-5build1 [122 kB] 403s Get:120 http://ftpmaster.internal/ubuntu resolute/main arm64 libjbig0 arm64 2.1-6.1ubuntu3 [29.2 kB] 403s Get:121 http://ftpmaster.internal/ubuntu resolute/main arm64 libwebp7 arm64 1.5.0-0.1build1 [205 kB] 403s Get:122 http://ftpmaster.internal/ubuntu resolute/main arm64 libtiff6 arm64 4.7.0-3ubuntu3 [196 kB] 403s Get:123 http://ftpmaster.internal/ubuntu resolute/main arm64 libxft2 arm64 2.3.6-1build2 [43.2 kB] 403s Get:124 http://ftpmaster.internal/ubuntu resolute/main arm64 libxss1 arm64 1:1.2.3-1build4 [7102 B] 403s Get:125 http://ftpmaster.internal/ubuntu resolute/main arm64 libtk8.6 arm64 8.6.17-1 [811 kB] 404s Get:126 http://ftpmaster.internal/ubuntu resolute/main arm64 libxt6t64 arm64 1:1.2.1-1.3 [168 kB] 404s Get:127 http://ftpmaster.internal/ubuntu resolute/main arm64 libxmu6 arm64 2:1.1.3-4 [47.6 kB] 404s Get:128 http://ftpmaster.internal/ubuntu resolute/main arm64 libxpm4 arm64 1:3.5.17-1build3 [35.5 kB] 404s Get:129 http://ftpmaster.internal/ubuntu resolute/main arm64 libxaw7 arm64 2:1.0.16-1build1 [183 kB] 404s Get:130 http://ftpmaster.internal/ubuntu resolute/main arm64 libxi6 arm64 2:1.8.2-2 [32.4 kB] 404s Get:131 http://ftpmaster.internal/ubuntu resolute/main arm64 libzstd-dev arm64 1.5.7+dfsg-3 [349 kB] 404s Get:132 http://ftpmaster.internal/ubuntu resolute/universe arm64 libzzip-0-13t64 arm64 0.13.78+dfsg.1-0.2 [30.7 kB] 404s Get:133 http://ftpmaster.internal/ubuntu resolute/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 404s Get:134 http://ftpmaster.internal/ubuntu resolute/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 404s Get:135 http://ftpmaster.internal/ubuntu resolute/universe arm64 node-normalize.css all 8.0.1-5.1 [10.4 kB] 404s Get:136 http://ftpmaster.internal/ubuntu resolute/universe arm64 pandoc-data all 3.1.11.1-3build1 [78.8 kB] 404s Get:137 http://ftpmaster.internal/ubuntu resolute/universe arm64 pandoc arm64 3.1.11.1+ds-4 [28.0 MB] 465s Get:138 http://ftpmaster.internal/ubuntu resolute/main arm64 zip arm64 3.0-15ubuntu3 [170 kB] 465s Get:139 http://ftpmaster.internal/ubuntu resolute/main arm64 unzip arm64 6.0-29ubuntu1 [176 kB] 466s Get:140 http://ftpmaster.internal/ubuntu resolute/main arm64 xdg-utils all 1.2.1-2ubuntu2 [66.1 kB] 466s Get:141 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-base-core arm64 4.5.2-1ubuntu2 [28.6 MB] 516s Get:142 http://ftpmaster.internal/ubuntu resolute/main arm64 liblzma-dev arm64 5.8.2-2 [180 kB] 516s Get:143 http://ftpmaster.internal/ubuntu resolute/main arm64 pkgconf-bin arm64 1.8.1-4build1 [21.7 kB] 516s Get:144 http://ftpmaster.internal/ubuntu resolute/main arm64 pkgconf arm64 1.8.1-4build1 [16.8 kB] 516s Get:145 http://ftpmaster.internal/ubuntu resolute/main arm64 libtirpc-dev arm64 1.3.6+ds-1 [202 kB] 516s Get:146 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-base-dev all 4.5.2-1ubuntu2 [1880 B] 516s Get:147 http://ftpmaster.internal/ubuntu resolute/universe arm64 pkg-r-autopkgtest all 20250812 [6158 B] 516s Get:148 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-biocgenerics all 0.52.0-2 [624 kB] 518s Get:149 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-biobase arm64 2.66.0-2 [2331 kB] 522s Get:150 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-s4vectors arm64 0.44.0+dfsg-2 [2054 kB] 525s Get:151 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-iranges arm64 2.40.1-3 [2301 kB] 529s Get:152 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-dbi all 1.2.3-1build1 [855 kB] 531s Get:153 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-bit arm64 4.6.0+dfsg-1 [450 kB] 531s Get:154 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-bit64 arm64 4.6.0-1-4 [495 kB] 531s Get:155 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rlang arm64 1.1.5-3 [1706 kB] 534s Get:156 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-cli arm64 3.6.4-1 [1374 kB] 536s Get:157 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-glue arm64 1.8.0-1 [163 kB] 536s Get:158 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-lifecycle all 1.0.5+dfsg-1 [120 kB] 536s Get:159 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 538s Get:160 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-blob all 1.3.0-1 [54.1 kB] 538s Get:161 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-fastmap arm64 1.2.0-1 [70.6 kB] 538s Get:162 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-cachem arm64 1.1.0-1 [74.1 kB] 539s Get:163 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-memoise all 2.0.1-1build1 [54.5 kB] 539s Get:164 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-pkgconfig all 2.0.3-2build2 [20.4 kB] 539s Get:165 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-plogr all 0.2.0-3build2 [15.8 kB] 539s Get:166 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-cpp11 all 0.5.3-1 [242 kB] 539s Get:167 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rsqlite arm64 2.3.9-1 [1247 kB] 540s Get:168 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-curl arm64 7.0.0+dfsg-1 [202 kB] 540s Get:169 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-jsonlite arm64 1.9.1+dfsg-1 [445 kB] 541s Get:170 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-mime arm64 0.12-2 [35.8 kB] 541s Get:171 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-sys arm64 3.4.3-1 [45.2 kB] 541s Get:172 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-askpass arm64 1.2.1-1 [24.8 kB] 541s Get:173 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-openssl arm64 2.3.2+dfsg-1 [406 kB] 541s Get:174 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-r6 all 2.6.1-1 [101 kB] 541s Get:175 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 541s Get:176 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-png arm64 0.1-8-1build2 [40.1 kB] 541s Get:177 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB] 541s Get:178 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-xvector arm64 0.46.0-2 [618 kB] 541s Get:179 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-ucsc.utils all 1.2.0+ds-2 [77.2 kB] 541s Get:180 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB] 564s Get:181 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-genomeinfodb all 1.42.3+dfsg-1 [3887 kB] 574s Get:182 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-crayon all 1.5.3-1 [165 kB] 574s Get:183 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-biostrings arm64 2.74.1+dfsg-2 [13.3 MB] 598s Get:184 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-keggrest all 1.46.0+dfsg-3 [183 kB] 598s Get:185 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-annotationdbi all 1.68.0-2 [4857 kB] 609s Get:186 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-generics all 0.1.4-1 [84.0 kB] 609s Get:187 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 609s Get:188 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 609s Get:189 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-pillar all 1.11.1+dfsg-1 [456 kB] 609s Get:190 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-fansi arm64 1.0.6-2 [627 kB] 610s Get:191 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-3 [420 kB] 610s Get:192 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 610s Get:193 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-tidyselect arm64 1.2.1+dfsg-1 [222 kB] 610s Get:194 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-dplyr arm64 1.1.4-4 [1534 kB] 613s Get:195 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-purrr arm64 1.0.4-1 [552 kB] 614s Get:196 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-stringi arm64 1.8.4-1build2 [901 kB] 616s Get:197 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB] 616s Get:198 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-tidyr arm64 1.3.1-1 [1154 kB] 618s Get:199 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-dbplyr all 2.5.1+dfsg-1 [1237 kB] 620s Get:200 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-filelock arm64 1.0.3-1 [29.7 kB] 620s Get:201 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-biocfilecache all 2.14.0+dfsg-2 [300 kB] 620s Get:202 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-biocio all 1.16.0+dfsg-2 [209 kB] 620s Get:203 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-formatr all 1.14-2 [152 kB] 620s Get:204 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-lambda.r all 1.2.4-2build2 [118 kB] 620s Get:205 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-futile.options all 1.0.1-3build2 [20.5 kB] 620s Get:206 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-futile.logger all 1.4.3-4build2 [98.4 kB] 620s Get:207 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-snow all 1:0.4.4-2build1 [98.7 kB] 620s Get:208 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-codetools all 0.2-20-1build1 [91.1 kB] 620s Get:209 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-bh all 1.84.0-1 [5962 B] 620s Get:210 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-biocparallel arm64 1.40.0-2 [1333 kB] 623s Get:211 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-base64enc arm64 0.1-3-3build1 [28.5 kB] 623s Get:212 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-digest arm64 0.6.39-1 [196 kB] 623s Get:213 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-htmltools arm64 0.5.8.1-1 [373 kB] 623s Get:214 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-evaluate all 1.0.5-1 [117 kB] 623s Get:215 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-xfun arm64 0.55+dfsg-1 [587 kB] 624s Get:216 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 624s Get:217 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-yaml arm64 2.3.10-1 [108 kB] 624s Get:218 http://ftpmaster.internal/ubuntu resolute/main arm64 libjs-mathjax all 2.7.9+dfsg-1build1 [6017 kB] 635s Get:219 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-knitr all 1.51+dfsg-1 [847 kB] 637s Get:220 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-5 [13.7 kB] 637s Get:221 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-fs arm64 1.6.5+dfsg-1 [244 kB] 637s Get:222 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rappdirs arm64 0.3.3-1build1 [49.5 kB] 637s Get:223 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-sass arm64 0.4.9+dfsg-1 [957 kB] 639s Get:224 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-bslib all 0.9.0+dfsg-3build1 [4560 kB] 649s Get:225 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-fontawesome all 0.5.3-1 [1331 kB] 652s Get:226 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-tinytex all 0.58-1 [148 kB] 652s Get:227 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-modernizr all 3.13.0-0.1build1 [100 kB] 652s Get:228 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-littler arm64 0.3.22-1 [85.1 kB] 652s Get:229 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 652s Get:230 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rcpp arm64 1.1.0-1 [2011 kB] 658s Get:231 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-later arm64 1.4.1+dfsg-1 [141 kB] 658s Get:232 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-promises arm64 1.3.2+dfsg-1 [290 kB] 658s Get:233 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-httpuv arm64 1.6.15+dfsg-1 [489 kB] 658s Get:234 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-xtable all 1:1.8-4-2build1 [691 kB] 660s Get:235 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 660s Get:236 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-commonmark arm64 1.9.5-1 [130 kB] 660s Get:237 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 660s Get:238 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB] 669s Get:239 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rmarkdown all 2.30+dfsg-1 [1501 kB] 672s Get:240 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-bookdown all 0.42+dfsg-1 [1409 kB] 674s Get:241 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB] 674s Get:242 http://ftpmaster.internal/ubuntu resolute/universe arm64 tex-common all 6.20 [30.0 kB] 674s Get:243 http://ftpmaster.internal/ubuntu resolute/main arm64 t1utils arm64 1.41-4build4 [59.8 kB] 674s Get:244 http://ftpmaster.internal/ubuntu resolute/universe arm64 texlive-binaries arm64 2025.20250727.75242+ds-5build1 [8302 kB] 690s Get:245 http://ftpmaster.internal/ubuntu resolute/universe arm64 texlive-base all 2025.20260124-1 [22.8 MB] 732s Get:246 http://ftpmaster.internal/ubuntu resolute/universe arm64 texlive-latex-base all 2025.20260124-1 [1321 kB] 736s Get:247 http://ftpmaster.internal/ubuntu resolute/universe arm64 texlive-bibtex-extra all 2025.20260124-1 [80.6 MB] 927s Get:248 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-biocversion all 3.20.0-2 [11.1 kB] 927s Get:249 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-biocstyle all 2.34.0+dfsg-1 [451 kB] 928s Get:250 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-hms all 1.1.4-1 [102 kB] 928s Get:251 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-prettyunits all 1.2.0-1 [162 kB] 928s Get:252 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-progress all 1.2.3-1 [91.9 kB] 928s Get:253 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-httr2 all 1.1.1-2 [752 kB] 930s Get:254 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-xml2 arm64 1.4.1-1 [326 kB] 930s Get:255 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-biomart all 2.62.1+dfsg-1 [444 kB] 930s Get:256 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-genomicranges arm64 1.58.0+dfsg-2 [2083 kB] 936s Get:257 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-xml arm64 3.99-0.20-1 [1749 kB] 941s Get:258 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-bitops arm64 1.0-9-1 [30.2 kB] 941s Get:259 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-rhtslib arm64 3.2.0+dfsg-2 [1429 kB] 945s Get:260 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-rsamtools arm64 2.22.0+dfsg-2 [3668 kB] 956s Get:261 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-matrixstats arm64 1.5.0-1 [496 kB] 956s Get:262 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-matrixgenerics all 1.18.1-1 [450 kB] 957s Get:263 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-lattice arm64 0.22-7-1 [1365 kB] 960s Get:264 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-matrix arm64 1.7-4-1 [4146 kB] 972s Get:265 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-abind all 1.4-8-1build1 [67.0 kB] 972s Get:266 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-s4arrays arm64 1.6.0+dfsg-2 [698 kB] 974s Get:267 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-sparsearray arm64 1.6.2+dfsg-2 [1369 kB] 976s Get:268 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-delayedarray arm64 0.32.0+dfsg-2 [2064 kB] 980s Get:269 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-summarizedexperiment all 1.36.0+dfsg-2 [1109 kB] 982s Get:270 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-genomicalignments arm64 1.42.0-2 [2164 kB] 986s Get:271 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rcurl arm64 1.98-1.16+dfsg-1 [806 kB] 988s Get:272 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rjson arm64 0.2.23-1 [104 kB] 988s Get:273 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-restfulr arm64 0.0.15-1 [380 kB] 988s Get:274 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-rtracklayer arm64 1.66.0-3 [5216 kB] 999s Get:275 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-bsgenome all 1.74.0-2 [7001 kB] 1020s Get:276 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-genomicfeatures all 1.58.0+dfsg-2 [937 kB] 1023s Get:277 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-registry all 0.5-1-2build2 [202 kB] 1023s Get:278 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rngtools all 1.5.2-1build1 [84.4 kB] 1023s Get:279 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-cluster arm64 2.1.8.2-1 [568 kB] 1024s Get:280 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-gridbase all 0.4-7-5build2 [162 kB] 1024s Get:281 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-colorspace arm64 2.1-1+dfsg-1 [1563 kB] 1028s Get:282 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build2 [54.0 kB] 1028s Get:283 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-iterators all 1.0.14-1build1 [336 kB] 1028s Get:284 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-foreach all 1.5.2-1build1 [124 kB] 1028s Get:285 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-doparallel all 1.0.17-1build1 [189 kB] 1028s Get:286 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-gtable all 0.3.6+dfsg-1 [199 kB] 1028s Get:287 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-isoband arm64 0.2.7-1 [1481 kB] 1031s Get:288 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-s7 arm64 0.2.0-1 [329 kB] 1031s Get:289 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-farver arm64 2.1.2-1 [1344 kB] 1033s Get:290 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-labeling all 0.4.3-1 [62.1 kB] 1033s Get:291 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-viridislite all 0.4.3-1 [1088 kB] 1036s Get:292 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-scales all 1.4.0-1 [725 kB] 1038s Get:293 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 r-cran-ggplot2 all 4.0.2+dfsg-1 [4941 kB] 1047s Get:294 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-plyr arm64 1.8.9-1 [831 kB] 1049s Get:295 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-reshape2 arm64 1.4.4-2build2 [118 kB] 1049s Get:296 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-nmf arm64 0.28-1 [3024 kB] 1054s Get:297 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-variantannotation arm64 1.52.0-2 [3592 kB] 1060s Get:298 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-pracma all 2.4.6-1 [1720 kB] 1063s Get:299 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-mass arm64 7.3-65-1 [1109 kB] 1065s Get:300 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-ggdendro all 0.2.0+dfsg-1 [173 kB] 1065s Get:301 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-cowplot all 1.1.3+dfsg-1 [614 kB] 1066s Get:302 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-lazyeval arm64 0.2.2-1build2 [145 kB] 1067s Get:303 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-ggalluvial all 0.12.5-2 [1982 kB] 1070s Get:304 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-mutationalpatterns all 3.16.0+dfsg-2 [2523 kB] 1074s Get:305 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-brio arm64 1.1.5-1 [39.1 kB] 1074s Get:306 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-ps arm64 1.9.0-1 [407 kB] 1074s Get:307 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-processx arm64 3.8.6-1 [363 kB] 1074s Get:308 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-callr all 3.7.6-1 [458 kB] 1074s Get:309 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-desc all 1.4.3-1 [359 kB] 1074s Get:310 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-diffobj arm64 0.3.5-1build1 [1154 kB] 1076s Get:311 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-gridextra all 2.3-3build2 [1032 kB] 1078s Get:312 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-pkgbuild all 1.4.8-1 [219 kB] 1078s Get:313 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rprojroot all 2.1.1-1 [131 kB] 1078s Get:314 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-pkgload all 1.4.1-1 [252 kB] 1078s Get:315 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-praise all 1.0.0-4build2 [20.9 kB] 1078s Get:316 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-waldo all 0.6.2-1 [153 kB] 1078s Get:317 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-testthat arm64 3.2.3-1 [1644 kB] 1081s Preconfiguring packages ... 1081s Fetched 470 MB in 15min 17s (513 kB/s) 1081s Selecting previously unselected package libc-dev-bin. 1081s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 136600 files and directories currently installed.) 1081s Preparing to unpack .../000-libc-dev-bin_2.42-2ubuntu4_arm64.deb ... 1081s Unpacking libc-dev-bin (2.42-2ubuntu4) ... 1081s Selecting previously unselected package linux-libc-dev:arm64. 1081s Preparing to unpack .../001-linux-libc-dev_6.19.0-3.3_arm64.deb ... 1081s Unpacking linux-libc-dev:arm64 (6.19.0-3.3) ... 1082s Selecting previously unselected package libcrypt-dev:arm64. 1082s Preparing to unpack .../002-libcrypt-dev_1%3a4.5.1-1_arm64.deb ... 1082s Unpacking libcrypt-dev:arm64 (1:4.5.1-1) ... 1082s Selecting previously unselected package rpcsvc-proto. 1082s Preparing to unpack .../003-rpcsvc-proto_1.4.3-1build1_arm64.deb ... 1082s Unpacking rpcsvc-proto (1.4.3-1build1) ... 1082s Selecting previously unselected package libc6-dev:arm64. 1082s Preparing to unpack .../004-libc6-dev_2.42-2ubuntu4_arm64.deb ... 1082s Unpacking libc6-dev:arm64 (2.42-2ubuntu4) ... 1082s Selecting previously unselected package libisl23:arm64. 1082s Preparing to unpack .../005-libisl23_0.27-1build1_arm64.deb ... 1082s Unpacking libisl23:arm64 (0.27-1build1) ... 1082s Selecting previously unselected package libmpc3:arm64. 1082s Preparing to unpack .../006-libmpc3_1.3.1-2_arm64.deb ... 1082s Unpacking libmpc3:arm64 (1.3.1-2) ... 1082s Selecting previously unselected package cpp-15-aarch64-linux-gnu. 1082s Preparing to unpack .../007-cpp-15-aarch64-linux-gnu_15.2.0-12ubuntu1_arm64.deb ... 1082s Unpacking cpp-15-aarch64-linux-gnu (15.2.0-12ubuntu1) ... 1082s Selecting previously unselected package cpp-15. 1082s Preparing to unpack .../008-cpp-15_15.2.0-12ubuntu1_arm64.deb ... 1082s Unpacking cpp-15 (15.2.0-12ubuntu1) ... 1082s Selecting previously unselected package cpp-aarch64-linux-gnu. 1082s Preparing to unpack .../009-cpp-aarch64-linux-gnu_4%3a15.2.0-4ubuntu1_arm64.deb ... 1082s Unpacking cpp-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 1082s Selecting previously unselected package cpp. 1082s Preparing to unpack .../010-cpp_4%3a15.2.0-4ubuntu1_arm64.deb ... 1082s Unpacking cpp (4:15.2.0-4ubuntu1) ... 1082s Selecting previously unselected package libcc1-0:arm64. 1082s Preparing to unpack .../011-libcc1-0_15.2.0-12ubuntu1_arm64.deb ... 1082s Unpacking libcc1-0:arm64 (15.2.0-12ubuntu1) ... 1082s Selecting previously unselected package libgomp1:arm64. 1082s Preparing to unpack .../012-libgomp1_15.2.0-12ubuntu1_arm64.deb ... 1082s Unpacking libgomp1:arm64 (15.2.0-12ubuntu1) ... 1082s Selecting previously unselected package libitm1:arm64. 1082s Preparing to unpack .../013-libitm1_15.2.0-12ubuntu1_arm64.deb ... 1082s Unpacking libitm1:arm64 (15.2.0-12ubuntu1) ... 1082s Selecting previously unselected package libasan8:arm64. 1082s Preparing to unpack .../014-libasan8_15.2.0-12ubuntu1_arm64.deb ... 1082s Unpacking libasan8:arm64 (15.2.0-12ubuntu1) ... 1082s Selecting previously unselected package liblsan0:arm64. 1082s Preparing to unpack .../015-liblsan0_15.2.0-12ubuntu1_arm64.deb ... 1082s Unpacking liblsan0:arm64 (15.2.0-12ubuntu1) ... 1082s Selecting previously unselected package libtsan2:arm64. 1082s Preparing to unpack .../016-libtsan2_15.2.0-12ubuntu1_arm64.deb ... 1082s Unpacking libtsan2:arm64 (15.2.0-12ubuntu1) ... 1083s Selecting previously unselected package libubsan1:arm64. 1083s Preparing to unpack .../017-libubsan1_15.2.0-12ubuntu1_arm64.deb ... 1083s Unpacking libubsan1:arm64 (15.2.0-12ubuntu1) ... 1083s Selecting previously unselected package libhwasan0:arm64. 1083s Preparing to unpack .../018-libhwasan0_15.2.0-12ubuntu1_arm64.deb ... 1083s Unpacking libhwasan0:arm64 (15.2.0-12ubuntu1) ... 1083s Selecting previously unselected package libgcc-15-dev:arm64. 1083s Preparing to unpack .../019-libgcc-15-dev_15.2.0-12ubuntu1_arm64.deb ... 1083s Unpacking libgcc-15-dev:arm64 (15.2.0-12ubuntu1) ... 1083s Selecting previously unselected package gcc-15-aarch64-linux-gnu. 1083s Preparing to unpack .../020-gcc-15-aarch64-linux-gnu_15.2.0-12ubuntu1_arm64.deb ... 1083s Unpacking gcc-15-aarch64-linux-gnu (15.2.0-12ubuntu1) ... 1083s Selecting previously unselected package gcc-15. 1083s Preparing to unpack .../021-gcc-15_15.2.0-12ubuntu1_arm64.deb ... 1083s Unpacking gcc-15 (15.2.0-12ubuntu1) ... 1083s Selecting previously unselected package gcc-aarch64-linux-gnu. 1083s Preparing to unpack .../022-gcc-aarch64-linux-gnu_4%3a15.2.0-4ubuntu1_arm64.deb ... 1083s Unpacking gcc-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 1083s Selecting previously unselected package gcc. 1083s Preparing to unpack .../023-gcc_4%3a15.2.0-4ubuntu1_arm64.deb ... 1083s Unpacking gcc (4:15.2.0-4ubuntu1) ... 1083s Selecting previously unselected package libstdc++-15-dev:arm64. 1083s Preparing to unpack .../024-libstdc++-15-dev_15.2.0-12ubuntu1_arm64.deb ... 1083s Unpacking libstdc++-15-dev:arm64 (15.2.0-12ubuntu1) ... 1083s Selecting previously unselected package g++-15-aarch64-linux-gnu. 1083s Preparing to unpack .../025-g++-15-aarch64-linux-gnu_15.2.0-12ubuntu1_arm64.deb ... 1083s Unpacking g++-15-aarch64-linux-gnu (15.2.0-12ubuntu1) ... 1084s Selecting previously unselected package g++-15. 1084s Preparing to unpack .../026-g++-15_15.2.0-12ubuntu1_arm64.deb ... 1084s Unpacking g++-15 (15.2.0-12ubuntu1) ... 1084s Selecting previously unselected package g++-aarch64-linux-gnu. 1084s Preparing to unpack .../027-g++-aarch64-linux-gnu_4%3a15.2.0-4ubuntu1_arm64.deb ... 1084s Unpacking g++-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 1084s Selecting previously unselected package g++. 1084s Preparing to unpack .../028-g++_4%3a15.2.0-4ubuntu1_arm64.deb ... 1084s Unpacking g++ (4:15.2.0-4ubuntu1) ... 1084s Selecting previously unselected package build-essential. 1084s Preparing to unpack .../029-build-essential_12.12ubuntu2_arm64.deb ... 1084s Unpacking build-essential (12.12ubuntu2) ... 1084s Selecting previously unselected package dctrl-tools. 1084s Preparing to unpack .../030-dctrl-tools_2.24-3build4_arm64.deb ... 1084s Unpacking dctrl-tools (2.24-3build4) ... 1084s Selecting previously unselected package fonts-dejavu-mono. 1084s Preparing to unpack .../031-fonts-dejavu-mono_2.37-8build1_all.deb ... 1084s Unpacking fonts-dejavu-mono (2.37-8build1) ... 1084s Selecting previously unselected package fonts-dejavu-core. 1084s Preparing to unpack .../032-fonts-dejavu-core_2.37-8build1_all.deb ... 1084s Unpacking fonts-dejavu-core (2.37-8build1) ... 1084s Selecting previously unselected package fontconfig-config. 1084s Preparing to unpack .../033-fontconfig-config_2.17.1-3ubuntu1_arm64.deb ... 1084s Unpacking fontconfig-config (2.17.1-3ubuntu1) ... 1084s Selecting previously unselected package libfontconfig1:arm64. 1084s Preparing to unpack .../034-libfontconfig1_2.17.1-3ubuntu1_arm64.deb ... 1084s Unpacking libfontconfig1:arm64 (2.17.1-3ubuntu1) ... 1084s Selecting previously unselected package fontconfig. 1084s Preparing to unpack .../035-fontconfig_2.17.1-3ubuntu1_arm64.deb ... 1084s Unpacking fontconfig (2.17.1-3ubuntu1) ... 1084s Selecting previously unselected package fonts-font-awesome. 1084s Preparing to unpack .../036-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1build1_all.deb ... 1084s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1build1) ... 1084s Selecting previously unselected package fonts-glyphicons-halflings. 1084s Preparing to unpack .../037-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-6_all.deb ... 1084s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-6) ... 1084s Selecting previously unselected package fonts-lmodern. 1084s Preparing to unpack .../038-fonts-lmodern_2.005-1build1_all.deb ... 1084s Unpacking fonts-lmodern (2.005-1build1) ... 1085s Selecting previously unselected package fonts-mathjax. 1085s Preparing to unpack .../039-fonts-mathjax_2.7.9+dfsg-1build1_all.deb ... 1085s Unpacking fonts-mathjax (2.7.9+dfsg-1build1) ... 1085s Selecting previously unselected package libgfortran5:arm64. 1085s Preparing to unpack .../040-libgfortran5_15.2.0-12ubuntu1_arm64.deb ... 1085s Unpacking libgfortran5:arm64 (15.2.0-12ubuntu1) ... 1085s Selecting previously unselected package libgfortran-15-dev:arm64. 1085s Preparing to unpack .../041-libgfortran-15-dev_15.2.0-12ubuntu1_arm64.deb ... 1085s Unpacking libgfortran-15-dev:arm64 (15.2.0-12ubuntu1) ... 1085s Selecting previously unselected package gfortran-15-aarch64-linux-gnu. 1085s Preparing to unpack .../042-gfortran-15-aarch64-linux-gnu_15.2.0-12ubuntu1_arm64.deb ... 1085s Unpacking gfortran-15-aarch64-linux-gnu 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Selecting previously unselected package libboost1.90-dev:arm64. 1085s Preparing to unpack .../053-libboost1.90-dev_1.90.0-2ubuntu1_arm64.deb ... 1085s Unpacking libboost1.90-dev:arm64 (1.90.0-2ubuntu1) ... 1087s Selecting previously unselected package libboost-dev:arm64. 1087s Preparing to unpack .../054-libboost-dev_1.90.0.0ubuntu3_arm64.deb ... 1087s Unpacking libboost-dev:arm64 (1.90.0.0ubuntu3) ... 1087s Selecting previously unselected package libbz2-dev:arm64. 1087s Preparing to unpack .../055-libbz2-dev_1.0.8-6build2_arm64.deb ... 1087s Unpacking libbz2-dev:arm64 (1.0.8-6build2) ... 1087s Selecting previously unselected package libpixman-1-0:arm64. 1087s Preparing to unpack .../056-libpixman-1-0_0.46.4-1_arm64.deb ... 1087s Unpacking libpixman-1-0:arm64 (0.46.4-1) ... 1087s Selecting previously unselected package libxcb-render0:arm64. 1087s Preparing to unpack .../057-libxcb-render0_1.17.0-2ubuntu1_arm64.deb ... 1087s Unpacking libxcb-render0:arm64 (1.17.0-2ubuntu1) ... 1087s Selecting previously unselected package libxcb-shm0:arm64. 1087s Preparing to unpack .../058-libxcb-shm0_1.17.0-2ubuntu1_arm64.deb ... 1087s Unpacking libxcb-shm0:arm64 (1.17.0-2ubuntu1) ... 1087s Selecting previously unselected package libxrender1:arm64. 1087s Preparing to unpack .../059-libxrender1_1%3a0.9.12-1_arm64.deb ... 1087s Unpacking libxrender1:arm64 (1:0.9.12-1) ... 1087s Selecting previously unselected package libcairo2:arm64. 1087s Preparing to unpack .../060-libcairo2_1.18.4-3_arm64.deb ... 1087s Unpacking libcairo2:arm64 (1.18.4-3) ... 1087s Selecting previously unselected package libdatrie1:arm64. 1087s Preparing to unpack .../061-libdatrie1_0.2.14-1_arm64.deb ... 1087s Unpacking libdatrie1:arm64 (0.2.14-1) ... 1087s Selecting previously unselected package libdeflate0:arm64. 1087s Preparing to unpack .../062-libdeflate0_1.23-2build1_arm64.deb ... 1087s Unpacking libdeflate0:arm64 (1.23-2build1) ... 1087s Selecting previously unselected package libdeflate-dev:arm64. 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1088s Unpacking libjs-microplugin.js (0.0.3+dfsg-2) ... 1088s Selecting previously unselected package libjs-jquery-selectize.js. 1089s Preparing to unpack .../084-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 1089s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 1089s Selecting previously unselected package libjs-jquery-ui. 1089s Preparing to unpack .../085-libjs-jquery-ui_1.13.2+dfsg-1build1_all.deb ... 1089s Unpacking libjs-jquery-ui (1.13.2+dfsg-1build1) ... 1089s Selecting previously unselected package libjs-json. 1089s Preparing to unpack .../086-libjs-json_0~20221030+~1.0.8-1build1_all.deb ... 1089s Unpacking libjs-json (0~20221030+~1.0.8-1build1) ... 1089s Selecting previously unselected package libjs-lunr. 1089s Preparing to unpack .../087-libjs-lunr_2.3.9~dfsg-2_all.deb ... 1089s Unpacking libjs-lunr (2.3.9~dfsg-2) ... 1089s Selecting previously unselected package libjs-prettify. 1089s Preparing to unpack .../088-libjs-prettify_2015.12.04+dfsg-3_all.deb ... 1089s Unpacking libjs-prettify (2015.12.04+dfsg-3) ... 1089s Selecting previously unselected package libkpathsea6:arm64. 1089s Preparing to unpack .../089-libkpathsea6_2025.20250727.75242+ds-5build1_arm64.deb ... 1089s Unpacking libkpathsea6:arm64 (2025.20250727.75242+ds-5build1) ... 1089s Selecting previously unselected package liblapack3:arm64. 1089s Preparing to unpack .../090-liblapack3_3.12.1-7ubuntu1_arm64.deb ... 1089s Unpacking liblapack3:arm64 (3.12.1-7ubuntu1) ... 1089s Selecting previously unselected package liblapack-dev:arm64. 1089s Preparing to unpack .../091-liblapack-dev_3.12.1-7ubuntu1_arm64.deb ... 1089s Unpacking liblapack-dev:arm64 (3.12.1-7ubuntu1) ... 1089s Selecting previously unselected package liblerc4:arm64. 1089s Preparing to unpack .../092-liblerc4_4.0.0+ds-5ubuntu2_arm64.deb ... 1089s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu2) ... 1089s Selecting previously unselected package liblua5.4-0:arm64. 1089s Preparing to unpack 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libpango-1.0-0:arm64 (1.57.0-1) ... 1089s Selecting previously unselected package libpangoft2-1.0-0:arm64. 1089s Preparing to unpack .../099-libpangoft2-1.0-0_1.57.0-1_arm64.deb ... 1089s Unpacking libpangoft2-1.0-0:arm64 (1.57.0-1) ... 1089s Selecting previously unselected package libpangocairo-1.0-0:arm64. 1089s Preparing to unpack .../100-libpangocairo-1.0-0_1.57.0-1_arm64.deb ... 1089s Unpacking libpangocairo-1.0-0:arm64 (1.57.0-1) ... 1089s Selecting previously unselected package libpaper2:arm64. 1089s Preparing to unpack .../101-libpaper2_2.2.5-0.3build1_arm64.deb ... 1089s Unpacking libpaper2:arm64 (2.2.5-0.3build1) ... 1090s Selecting previously unselected package libpaper-utils. 1090s Preparing to unpack .../102-libpaper-utils_2.2.5-0.3build1_arm64.deb ... 1090s Unpacking libpaper-utils (2.2.5-0.3build1) ... 1090s Selecting previously unselected package libpcre2-16-0:arm64. 1090s Preparing to unpack .../103-libpcre2-16-0_10.46-1_arm64.deb ... 1090s Unpacking libpcre2-16-0:arm64 (10.46-1) ... 1090s Selecting previously unselected package libpcre2-32-0:arm64. 1090s Preparing to unpack .../104-libpcre2-32-0_10.46-1_arm64.deb ... 1090s Unpacking libpcre2-32-0:arm64 (10.46-1) ... 1090s Selecting previously unselected package libpcre2-posix3:arm64. 1090s Preparing to unpack .../105-libpcre2-posix3_10.46-1_arm64.deb ... 1090s Unpacking libpcre2-posix3:arm64 (10.46-1) ... 1090s Selecting previously unselected package libpcre2-dev:arm64. 1090s Preparing to unpack .../106-libpcre2-dev_10.46-1_arm64.deb ... 1090s Unpacking libpcre2-dev:arm64 (10.46-1) ... 1090s Selecting previously unselected package libpkgconf3:arm64. 1090s Preparing to unpack .../107-libpkgconf3_1.8.1-4build1_arm64.deb ... 1090s Unpacking libpkgconf3:arm64 (1.8.1-4build1) ... 1090s Selecting previously unselected package zlib1g-dev:arm64. 1090s Preparing to unpack .../108-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu2_arm64.deb ... 1090s Unpacking zlib1g-dev:arm64 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libsharpyuv0:arm64 (1.5.0-0.1build1) ... 1090s Selecting previously unselected package libsm6:arm64. 1090s Preparing to unpack .../114-libsm6_2%3a1.2.6-1build1_arm64.deb ... 1090s Unpacking libsm6:arm64 (2:1.2.6-1build1) ... 1090s Selecting previously unselected package libsynctex2:arm64. 1090s Preparing to unpack .../115-libsynctex2_2025.20250727.75242+ds-5build1_arm64.deb ... 1090s Unpacking libsynctex2:arm64 (2025.20250727.75242+ds-5build1) ... 1090s Selecting previously unselected package libtcl8.6:arm64. 1090s Preparing to unpack .../116-libtcl8.6_8.6.17+dfsg-1build1_arm64.deb ... 1090s Unpacking libtcl8.6:arm64 (8.6.17+dfsg-1build1) ... 1090s Selecting previously unselected package libteckit0:arm64. 1090s Preparing to unpack .../117-libteckit0_2.5.13+ds-1_arm64.deb ... 1090s Unpacking libteckit0:arm64 (2.5.13+ds-1) ... 1090s Selecting previously unselected package libtexlua53-5:arm64. 1090s Preparing to unpack .../118-libtexlua53-5_2025.20250727.75242+ds-5build1_arm64.deb ... 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1091s Selecting previously unselected package libtk8.6:arm64. 1091s Preparing to unpack .../124-libtk8.6_8.6.17-1_arm64.deb ... 1091s Unpacking libtk8.6:arm64 (8.6.17-1) ... 1091s Selecting previously unselected package libxt6t64:arm64. 1091s Preparing to unpack .../125-libxt6t64_1%3a1.2.1-1.3_arm64.deb ... 1091s Unpacking libxt6t64:arm64 (1:1.2.1-1.3) ... 1091s Selecting previously unselected package libxmu6:arm64. 1091s Preparing to unpack .../126-libxmu6_2%3a1.1.3-4_arm64.deb ... 1091s Unpacking libxmu6:arm64 (2:1.1.3-4) ... 1091s Selecting previously unselected package libxpm4:arm64. 1091s Preparing to unpack .../127-libxpm4_1%3a3.5.17-1build3_arm64.deb ... 1091s Unpacking libxpm4:arm64 (1:3.5.17-1build3) ... 1091s Selecting previously unselected package libxaw7:arm64. 1091s Preparing to unpack .../128-libxaw7_2%3a1.0.16-1build1_arm64.deb ... 1091s Unpacking libxaw7:arm64 (2:1.0.16-1build1) ... 1091s Selecting previously unselected package libxi6:arm64. 1091s Preparing to unpack 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.../134-node-normalize.css_8.0.1-5.1_all.deb ... 1091s Unpacking node-normalize.css (8.0.1-5.1) ... 1091s Selecting previously unselected package pandoc-data. 1091s Preparing to unpack .../135-pandoc-data_3.1.11.1-3build1_all.deb ... 1091s Unpacking pandoc-data (3.1.11.1-3build1) ... 1091s Selecting previously unselected package pandoc. 1091s Preparing to unpack .../136-pandoc_3.1.11.1+ds-4_arm64.deb ... 1091s Unpacking pandoc (3.1.11.1+ds-4) ... 1092s Selecting previously unselected package zip. 1092s Preparing to unpack .../137-zip_3.0-15ubuntu3_arm64.deb ... 1092s Unpacking zip (3.0-15ubuntu3) ... 1092s Selecting previously unselected package unzip. 1092s Preparing to unpack .../138-unzip_6.0-29ubuntu1_arm64.deb ... 1092s Unpacking unzip (6.0-29ubuntu1) ... 1092s Selecting previously unselected package xdg-utils. 1092s Preparing to unpack .../139-xdg-utils_1.2.1-2ubuntu2_all.deb ... 1092s Unpacking xdg-utils (1.2.1-2ubuntu2) ... 1092s Selecting previously unselected package r-base-core. 1092s Preparing to unpack .../140-r-base-core_4.5.2-1ubuntu2_arm64.deb ... 1092s Unpacking r-base-core (4.5.2-1ubuntu2) ... 1092s Selecting previously unselected package liblzma-dev:arm64. 1092s Preparing to unpack .../141-liblzma-dev_5.8.2-2_arm64.deb ... 1092s Unpacking liblzma-dev:arm64 (5.8.2-2) ... 1093s Selecting previously unselected package pkgconf-bin. 1093s Preparing to unpack .../142-pkgconf-bin_1.8.1-4build1_arm64.deb ... 1093s Unpacking pkgconf-bin (1.8.1-4build1) ... 1093s Selecting previously unselected package pkgconf:arm64. 1093s Preparing to unpack .../143-pkgconf_1.8.1-4build1_arm64.deb ... 1093s Unpacking pkgconf:arm64 (1.8.1-4build1) ... 1093s Selecting previously unselected package libtirpc-dev:arm64. 1093s Preparing to unpack .../144-libtirpc-dev_1.3.6+ds-1_arm64.deb ... 1093s Unpacking libtirpc-dev:arm64 (1.3.6+ds-1) ... 1093s Selecting previously unselected package r-base-dev. 1093s Preparing to unpack .../145-r-base-dev_4.5.2-1ubuntu2_all.deb ... 1093s Unpacking r-base-dev (4.5.2-1ubuntu2) ... 1093s Selecting previously unselected package pkg-r-autopkgtest. 1093s Preparing to unpack .../146-pkg-r-autopkgtest_20250812_all.deb ... 1093s Unpacking pkg-r-autopkgtest (20250812) ... 1093s Selecting previously unselected package r-bioc-biocgenerics. 1093s Preparing to unpack .../147-r-bioc-biocgenerics_0.52.0-2_all.deb ... 1093s Unpacking r-bioc-biocgenerics (0.52.0-2) ... 1093s Selecting previously unselected package r-bioc-biobase. 1093s Preparing to unpack .../148-r-bioc-biobase_2.66.0-2_arm64.deb ... 1093s Unpacking r-bioc-biobase (2.66.0-2) ... 1093s Selecting previously unselected package r-bioc-s4vectors. 1093s Preparing to unpack .../149-r-bioc-s4vectors_0.44.0+dfsg-2_arm64.deb ... 1093s Unpacking r-bioc-s4vectors (0.44.0+dfsg-2) ... 1093s Selecting previously unselected package r-bioc-iranges. 1093s Preparing to unpack .../150-r-bioc-iranges_2.40.1-3_arm64.deb ... 1093s Unpacking r-bioc-iranges (2.40.1-3) ... 1093s Selecting previously unselected package r-cran-dbi. 1093s Preparing to unpack .../151-r-cran-dbi_1.2.3-1build1_all.deb ... 1093s Unpacking r-cran-dbi (1.2.3-1build1) ... 1093s Selecting previously unselected package r-cran-bit. 1093s Preparing to unpack .../152-r-cran-bit_4.6.0+dfsg-1_arm64.deb ... 1093s Unpacking r-cran-bit (4.6.0+dfsg-1) ... 1093s Selecting previously unselected package r-cran-bit64. 1093s Preparing to unpack .../153-r-cran-bit64_4.6.0-1-4_arm64.deb ... 1093s Unpacking r-cran-bit64 (4.6.0-1-4) ... 1093s Selecting previously unselected package r-cran-rlang. 1093s Preparing to unpack .../154-r-cran-rlang_1.1.5-3_arm64.deb ... 1093s Unpacking r-cran-rlang (1.1.5-3) ... 1093s Selecting previously unselected package r-cran-cli. 1093s Preparing to unpack .../155-r-cran-cli_3.6.4-1_arm64.deb ... 1093s Unpacking r-cran-cli (3.6.4-1) ... 1093s Selecting previously unselected package r-cran-glue. 1093s Preparing to unpack .../156-r-cran-glue_1.8.0-1_arm64.deb ... 1093s Unpacking r-cran-glue (1.8.0-1) ... 1093s Selecting previously unselected package r-cran-lifecycle. 1093s Preparing to unpack .../157-r-cran-lifecycle_1.0.5+dfsg-1_all.deb ... 1093s Unpacking r-cran-lifecycle (1.0.5+dfsg-1) ... 1093s Selecting previously unselected package r-cran-vctrs. 1093s Preparing to unpack .../158-r-cran-vctrs_0.6.5-1_arm64.deb ... 1093s Unpacking r-cran-vctrs (0.6.5-1) ... 1093s Selecting previously unselected package r-cran-blob. 1093s Preparing to unpack .../159-r-cran-blob_1.3.0-1_all.deb ... 1093s Unpacking r-cran-blob (1.3.0-1) ... 1093s Selecting previously unselected package r-cran-fastmap. 1093s Preparing to unpack .../160-r-cran-fastmap_1.2.0-1_arm64.deb ... 1093s Unpacking r-cran-fastmap (1.2.0-1) ... 1094s Selecting previously unselected package r-cran-cachem. 1094s Preparing to unpack .../161-r-cran-cachem_1.1.0-1_arm64.deb ... 1094s Unpacking r-cran-cachem (1.1.0-1) ... 1094s Selecting previously unselected package r-cran-memoise. 1094s Preparing to unpack .../162-r-cran-memoise_2.0.1-1build1_all.deb ... 1094s Unpacking r-cran-memoise (2.0.1-1build1) ... 1094s Selecting previously unselected package r-cran-pkgconfig. 1094s Preparing to unpack .../163-r-cran-pkgconfig_2.0.3-2build2_all.deb ... 1094s Unpacking r-cran-pkgconfig (2.0.3-2build2) ... 1094s Selecting previously unselected package r-cran-plogr. 1094s Preparing to unpack .../164-r-cran-plogr_0.2.0-3build2_all.deb ... 1094s Unpacking r-cran-plogr (0.2.0-3build2) ... 1094s Selecting previously unselected package r-cran-cpp11. 1094s Preparing to unpack .../165-r-cran-cpp11_0.5.3-1_all.deb ... 1094s Unpacking r-cran-cpp11 (0.5.3-1) ... 1094s Selecting previously unselected package r-cran-rsqlite. 1094s Preparing to unpack .../166-r-cran-rsqlite_2.3.9-1_arm64.deb ... 1094s Unpacking r-cran-rsqlite (2.3.9-1) ... 1094s Selecting previously unselected package r-cran-curl. 1094s Preparing to unpack .../167-r-cran-curl_7.0.0+dfsg-1_arm64.deb ... 1094s Unpacking r-cran-curl (7.0.0+dfsg-1) ... 1094s Selecting previously unselected package r-cran-jsonlite. 1094s Preparing to unpack .../168-r-cran-jsonlite_1.9.1+dfsg-1_arm64.deb ... 1094s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ... 1094s Selecting previously unselected package r-cran-mime. 1094s Preparing to unpack .../169-r-cran-mime_0.12-2_arm64.deb ... 1094s Unpacking r-cran-mime (0.12-2) ... 1094s Selecting previously unselected package r-cran-sys. 1094s Preparing to unpack .../170-r-cran-sys_3.4.3-1_arm64.deb ... 1094s Unpacking r-cran-sys (3.4.3-1) ... 1094s Selecting previously unselected package r-cran-askpass. 1094s Preparing to unpack .../171-r-cran-askpass_1.2.1-1_arm64.deb ... 1094s Unpacking r-cran-askpass (1.2.1-1) ... 1094s Selecting previously unselected package r-cran-openssl. 1094s Preparing to unpack .../172-r-cran-openssl_2.3.2+dfsg-1_arm64.deb ... 1094s Unpacking r-cran-openssl (2.3.2+dfsg-1) ... 1094s Selecting previously unselected package r-cran-r6. 1094s Preparing to unpack .../173-r-cran-r6_2.6.1-1_all.deb ... 1094s Unpacking r-cran-r6 (2.6.1-1) ... 1094s Selecting previously unselected package r-cran-httr. 1094s Preparing to unpack .../174-r-cran-httr_1.4.7+dfsg-1_all.deb ... 1094s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 1094s Selecting previously unselected package r-cran-png. 1094s Preparing to unpack .../175-r-cran-png_0.1-8-1build2_arm64.deb ... 1094s Unpacking r-cran-png (0.1-8-1build2) ... 1094s Selecting previously unselected package r-bioc-zlibbioc. 1094s Preparing to unpack .../176-r-bioc-zlibbioc_1.52.0+dfsg-2_all.deb ... 1094s Unpacking r-bioc-zlibbioc (1.52.0+dfsg-2) ... 1094s Selecting previously unselected package r-bioc-xvector. 1094s Preparing to unpack .../177-r-bioc-xvector_0.46.0-2_arm64.deb ... 1094s Unpacking r-bioc-xvector (0.46.0-2) ... 1094s Selecting previously unselected package r-bioc-ucsc.utils. 1094s Preparing to unpack .../178-r-bioc-ucsc.utils_1.2.0+ds-2_all.deb ... 1094s Unpacking r-bioc-ucsc.utils (1.2.0+ds-2) ... 1094s Selecting previously unselected package r-bioc-genomeinfodbdata. 1094s Preparing to unpack .../179-r-bioc-genomeinfodbdata_1.2.13-2_all.deb ... 1094s Unpacking r-bioc-genomeinfodbdata (1.2.13-2) ... 1095s Selecting previously unselected package r-bioc-genomeinfodb. 1095s Preparing to unpack .../180-r-bioc-genomeinfodb_1.42.3+dfsg-1_all.deb ... 1095s Unpacking r-bioc-genomeinfodb (1.42.3+dfsg-1) ... 1095s Selecting previously unselected package r-cran-crayon. 1095s Preparing to unpack .../181-r-cran-crayon_1.5.3-1_all.deb ... 1095s Unpacking r-cran-crayon (1.5.3-1) ... 1095s Selecting previously unselected package r-bioc-biostrings. 1095s Preparing to unpack .../182-r-bioc-biostrings_2.74.1+dfsg-2_arm64.deb ... 1095s Unpacking r-bioc-biostrings (2.74.1+dfsg-2) ... 1095s Selecting previously unselected package r-bioc-keggrest. 1095s Preparing to unpack .../183-r-bioc-keggrest_1.46.0+dfsg-3_all.deb ... 1095s Unpacking r-bioc-keggrest (1.46.0+dfsg-3) ... 1095s Selecting previously unselected package r-bioc-annotationdbi. 1095s Preparing to unpack .../184-r-bioc-annotationdbi_1.68.0-2_all.deb ... 1095s Unpacking r-bioc-annotationdbi (1.68.0-2) ... 1095s Selecting previously unselected package r-cran-generics. 1095s Preparing to unpack .../185-r-cran-generics_0.1.4-1_all.deb ... 1095s Unpacking r-cran-generics (0.1.4-1) ... 1095s Selecting previously unselected package r-cran-magrittr. 1095s Preparing to unpack .../186-r-cran-magrittr_2.0.3-1_arm64.deb ... 1095s Unpacking r-cran-magrittr (2.0.3-1) ... 1095s Selecting previously unselected package r-cran-utf8. 1095s Preparing to unpack .../187-r-cran-utf8_1.2.4-1_arm64.deb ... 1095s Unpacking r-cran-utf8 (1.2.4-1) ... 1095s Selecting previously unselected package r-cran-pillar. 1095s Preparing to unpack .../188-r-cran-pillar_1.11.1+dfsg-1_all.deb ... 1095s Unpacking r-cran-pillar (1.11.1+dfsg-1) ... 1095s Selecting previously unselected package r-cran-fansi. 1095s Preparing to unpack .../189-r-cran-fansi_1.0.6-2_arm64.deb ... 1095s Unpacking r-cran-fansi (1.0.6-2) ... 1095s Selecting previously unselected package r-cran-tibble. 1095s Preparing to unpack .../190-r-cran-tibble_3.2.1+dfsg-3_arm64.deb ... 1095s Unpacking r-cran-tibble (3.2.1+dfsg-3) ... 1095s Selecting previously unselected package r-cran-withr. 1095s Preparing to unpack .../191-r-cran-withr_3.0.2+dfsg-1_all.deb ... 1095s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 1095s Selecting previously unselected package r-cran-tidyselect. 1095s Preparing to unpack .../192-r-cran-tidyselect_1.2.1+dfsg-1_arm64.deb ... 1095s Unpacking r-cran-tidyselect (1.2.1+dfsg-1) ... 1095s Selecting previously unselected package r-cran-dplyr. 1095s Preparing to unpack .../193-r-cran-dplyr_1.1.4-4_arm64.deb ... 1095s Unpacking r-cran-dplyr (1.1.4-4) ... 1095s Selecting previously unselected package r-cran-purrr. 1095s Preparing to unpack .../194-r-cran-purrr_1.0.4-1_arm64.deb ... 1095s Unpacking r-cran-purrr (1.0.4-1) ... 1095s Selecting previously unselected package r-cran-stringi. 1095s Preparing to unpack .../195-r-cran-stringi_1.8.4-1build2_arm64.deb ... 1095s Unpacking r-cran-stringi (1.8.4-1build2) ... 1096s Selecting previously unselected package r-cran-stringr. 1096s Preparing to unpack .../196-r-cran-stringr_1.5.1-1_all.deb ... 1096s Unpacking r-cran-stringr (1.5.1-1) ... 1096s Selecting previously unselected package r-cran-tidyr. 1096s Preparing to unpack .../197-r-cran-tidyr_1.3.1-1_arm64.deb ... 1096s Unpacking r-cran-tidyr (1.3.1-1) ... 1096s Selecting previously unselected package r-cran-dbplyr. 1096s Preparing to unpack .../198-r-cran-dbplyr_2.5.1+dfsg-1_all.deb ... 1096s Unpacking r-cran-dbplyr (2.5.1+dfsg-1) ... 1096s Selecting previously unselected package r-cran-filelock. 1096s Preparing to unpack .../199-r-cran-filelock_1.0.3-1_arm64.deb ... 1096s Unpacking r-cran-filelock (1.0.3-1) ... 1096s Selecting previously unselected package r-bioc-biocfilecache. 1096s Preparing to unpack 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.../205-r-cran-futile.logger_1.4.3-4build2_all.deb ... 1096s Unpacking r-cran-futile.logger (1.4.3-4build2) ... 1096s Selecting previously unselected package r-cran-snow. 1096s Preparing to unpack .../206-r-cran-snow_1%3a0.4.4-2build1_all.deb ... 1096s Unpacking r-cran-snow (1:0.4.4-2build1) ... 1096s Selecting previously unselected package r-cran-codetools. 1096s Preparing to unpack .../207-r-cran-codetools_0.2-20-1build1_all.deb ... 1096s Unpacking r-cran-codetools (0.2-20-1build1) ... 1096s Selecting previously unselected package r-cran-bh. 1096s Preparing to unpack .../208-r-cran-bh_1.84.0-1_all.deb ... 1096s Unpacking r-cran-bh (1.84.0-1) ... 1096s Selecting previously unselected package r-bioc-biocparallel. 1096s Preparing to unpack .../209-r-bioc-biocparallel_1.40.0-2_arm64.deb ... 1096s Unpacking r-bioc-biocparallel (1.40.0-2) ... 1096s Selecting previously unselected package r-cran-base64enc. 1096s Preparing to unpack .../210-r-cran-base64enc_0.1-3-3build1_arm64.deb ... 1096s Unpacking r-cran-base64enc (0.1-3-3build1) ... 1096s Selecting previously unselected package r-cran-digest. 1096s Preparing to unpack .../211-r-cran-digest_0.6.39-1_arm64.deb ... 1096s Unpacking r-cran-digest (0.6.39-1) ... 1096s Selecting previously unselected package r-cran-htmltools. 1096s Preparing to unpack .../212-r-cran-htmltools_0.5.8.1-1_arm64.deb ... 1096s Unpacking r-cran-htmltools (0.5.8.1-1) ... 1096s Selecting previously unselected package r-cran-evaluate. 1096s Preparing to unpack .../213-r-cran-evaluate_1.0.5-1_all.deb ... 1096s Unpacking r-cran-evaluate (1.0.5-1) ... 1096s Selecting previously unselected package r-cran-xfun. 1097s Preparing to unpack .../214-r-cran-xfun_0.55+dfsg-1_arm64.deb ... 1097s Unpacking r-cran-xfun (0.55+dfsg-1) ... 1097s Selecting previously unselected package r-cran-highr. 1097s Preparing to unpack .../215-r-cran-highr_0.11+dfsg-1_all.deb ... 1097s Unpacking r-cran-highr (0.11+dfsg-1) ... 1097s Selecting previously unselected package r-cran-yaml. 1097s Preparing to unpack .../216-r-cran-yaml_2.3.10-1_arm64.deb ... 1097s Unpacking r-cran-yaml (2.3.10-1) ... 1097s Selecting previously unselected package libjs-mathjax. 1097s Preparing to unpack .../217-libjs-mathjax_2.7.9+dfsg-1build1_all.deb ... 1097s Unpacking libjs-mathjax (2.7.9+dfsg-1build1) ... 1097s Selecting previously unselected package r-cran-knitr. 1097s Preparing to unpack .../218-r-cran-knitr_1.51+dfsg-1_all.deb ... 1097s Unpacking r-cran-knitr (1.51+dfsg-1) ... 1097s Selecting previously unselected package r-cran-jquerylib. 1097s Preparing to unpack .../219-r-cran-jquerylib_0.1.4+dfsg-5_all.deb ... 1097s Unpacking r-cran-jquerylib (0.1.4+dfsg-5) ... 1097s Selecting previously unselected package r-cran-fs. 1097s Preparing to unpack .../220-r-cran-fs_1.6.5+dfsg-1_arm64.deb ... 1097s Unpacking r-cran-fs (1.6.5+dfsg-1) ... 1097s Selecting previously unselected package r-cran-rappdirs. 1097s Preparing to unpack .../221-r-cran-rappdirs_0.3.3-1build1_arm64.deb ... 1097s Unpacking r-cran-rappdirs (0.3.3-1build1) ... 1097s Selecting previously unselected package r-cran-sass. 1097s Preparing to unpack .../222-r-cran-sass_0.4.9+dfsg-1_arm64.deb ... 1097s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 1097s Selecting previously unselected package r-cran-bslib. 1097s Preparing to unpack .../223-r-cran-bslib_0.9.0+dfsg-3build1_all.deb ... 1097s Unpacking r-cran-bslib (0.9.0+dfsg-3build1) ... 1098s Selecting previously unselected package r-cran-fontawesome. 1098s Preparing to unpack .../224-r-cran-fontawesome_0.5.3-1_all.deb ... 1098s Unpacking r-cran-fontawesome (0.5.3-1) ... 1098s Selecting previously unselected package r-cran-tinytex. 1098s Preparing to unpack .../225-r-cran-tinytex_0.58-1_all.deb ... 1098s Unpacking r-cran-tinytex (0.58-1) ... 1098s Selecting previously unselected package libjs-modernizr. 1098s Preparing to unpack .../226-libjs-modernizr_3.13.0-0.1build1_all.deb ... 1098s Unpacking libjs-modernizr (3.13.0-0.1build1) ... 1098s Selecting previously unselected package r-cran-littler. 1098s Preparing to unpack .../227-r-cran-littler_0.3.22-1_arm64.deb ... 1098s Unpacking r-cran-littler (0.3.22-1) ... 1098s Selecting previously unselected package r-cran-pkgkitten. 1098s Preparing to unpack .../228-r-cran-pkgkitten_0.2.4-1_all.deb ... 1098s Unpacking r-cran-pkgkitten (0.2.4-1) ... 1098s Selecting previously unselected package r-cran-rcpp. 1098s Preparing to unpack .../229-r-cran-rcpp_1.1.0-1_arm64.deb ... 1098s Unpacking r-cran-rcpp (1.1.0-1) ... 1098s Selecting previously unselected package r-cran-later. 1098s Preparing to unpack .../230-r-cran-later_1.4.1+dfsg-1_arm64.deb ... 1098s Unpacking r-cran-later (1.4.1+dfsg-1) ... 1098s Selecting previously unselected package r-cran-promises. 1098s Preparing to unpack .../231-r-cran-promises_1.3.2+dfsg-1_arm64.deb ... 1098s Unpacking r-cran-promises (1.3.2+dfsg-1) ... 1098s Selecting previously unselected package r-cran-httpuv. 1098s Preparing to unpack .../232-r-cran-httpuv_1.6.15+dfsg-1_arm64.deb ... 1098s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 1098s Selecting previously unselected package r-cran-xtable. 1098s Preparing to unpack .../233-r-cran-xtable_1%3a1.8-4-2build1_all.deb ... 1098s Unpacking r-cran-xtable (1:1.8-4-2build1) ... 1098s Selecting previously unselected package r-cran-sourcetools. 1098s Preparing to unpack .../234-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 1098s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 1098s Selecting previously unselected package r-cran-commonmark. 1098s Preparing to unpack .../235-r-cran-commonmark_1.9.5-1_arm64.deb ... 1098s Unpacking r-cran-commonmark (1.9.5-1) ... 1098s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 1098s Preparing to unpack .../236-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 1098s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 1098s Selecting previously unselected package r-cran-shiny. 1098s Preparing to unpack .../237-r-cran-shiny_1.10.0+dfsg-2_all.deb ... 1098s Unpacking r-cran-shiny (1.10.0+dfsg-2) ... 1098s Selecting previously unselected package r-cran-rmarkdown. 1098s Preparing to unpack .../238-r-cran-rmarkdown_2.30+dfsg-1_all.deb ... 1098s Unpacking r-cran-rmarkdown (2.30+dfsg-1) ... 1099s Selecting previously unselected package r-cran-bookdown. 1099s Preparing to unpack .../239-r-cran-bookdown_0.42+dfsg-1_all.deb ... 1099s Unpacking r-cran-bookdown (0.42+dfsg-1) ... 1099s Selecting previously unselected package r-cran-biocmanager. 1099s Preparing to unpack .../240-r-cran-biocmanager_1.30.25+dfsg-1_all.deb ... 1099s Unpacking r-cran-biocmanager (1.30.25+dfsg-1) ... 1099s Selecting previously unselected package tex-common. 1099s Preparing to unpack .../241-tex-common_6.20_all.deb ... 1099s Unpacking tex-common (6.20) ... 1099s Selecting previously unselected package t1utils. 1099s Preparing to unpack .../242-t1utils_1.41-4build4_arm64.deb ... 1099s Unpacking t1utils 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Unpacking r-bioc-biocversion (3.20.0-2) ... 1103s Selecting previously unselected package r-bioc-biocstyle. 1103s Preparing to unpack .../248-r-bioc-biocstyle_2.34.0+dfsg-1_all.deb ... 1103s Unpacking r-bioc-biocstyle (2.34.0+dfsg-1) ... 1103s Selecting previously unselected package r-cran-hms. 1103s Preparing to unpack .../249-r-cran-hms_1.1.4-1_all.deb ... 1103s Unpacking r-cran-hms (1.1.4-1) ... 1103s Selecting previously unselected package r-cran-prettyunits. 1103s Preparing to unpack .../250-r-cran-prettyunits_1.2.0-1_all.deb ... 1103s Unpacking r-cran-prettyunits (1.2.0-1) ... 1103s Selecting previously unselected package r-cran-progress. 1103s Preparing to unpack .../251-r-cran-progress_1.2.3-1_all.deb ... 1103s Unpacking r-cran-progress (1.2.3-1) ... 1103s Selecting previously unselected package r-cran-httr2. 1103s Preparing to unpack .../252-r-cran-httr2_1.1.1-2_all.deb ... 1103s Unpacking r-cran-httr2 (1.1.1-2) ... 1103s Selecting previously unselected package r-cran-xml2. 1103s Preparing to unpack .../253-r-cran-xml2_1.4.1-1_arm64.deb ... 1103s Unpacking r-cran-xml2 (1.4.1-1) ... 1103s Selecting previously unselected package r-bioc-biomart. 1103s Preparing to unpack .../254-r-bioc-biomart_2.62.1+dfsg-1_all.deb ... 1103s Unpacking r-bioc-biomart (2.62.1+dfsg-1) ... 1103s Selecting previously unselected package r-bioc-genomicranges. 1103s Preparing to unpack .../255-r-bioc-genomicranges_1.58.0+dfsg-2_arm64.deb ... 1103s Unpacking r-bioc-genomicranges (1.58.0+dfsg-2) ... 1103s Selecting previously unselected package r-cran-xml. 1103s Preparing to unpack .../256-r-cran-xml_3.99-0.20-1_arm64.deb ... 1103s Unpacking r-cran-xml (3.99-0.20-1) ... 1103s Selecting previously unselected package r-cran-bitops. 1103s Preparing to unpack .../257-r-cran-bitops_1.0-9-1_arm64.deb ... 1103s Unpacking r-cran-bitops (1.0-9-1) ... 1103s Selecting previously unselected package r-bioc-rhtslib. 1104s Preparing to unpack .../258-r-bioc-rhtslib_3.2.0+dfsg-2_arm64.deb ... 1104s Unpacking r-bioc-rhtslib (3.2.0+dfsg-2) ... 1104s Selecting previously unselected package r-bioc-rsamtools. 1104s Preparing to unpack .../259-r-bioc-rsamtools_2.22.0+dfsg-2_arm64.deb ... 1104s Unpacking r-bioc-rsamtools (2.22.0+dfsg-2) ... 1104s Selecting previously unselected package r-cran-matrixstats. 1104s Preparing to unpack .../260-r-cran-matrixstats_1.5.0-1_arm64.deb ... 1104s Unpacking r-cran-matrixstats (1.5.0-1) ... 1104s Selecting previously unselected package r-bioc-matrixgenerics. 1104s Preparing to unpack .../261-r-bioc-matrixgenerics_1.18.1-1_all.deb ... 1104s Unpacking r-bioc-matrixgenerics (1.18.1-1) ... 1104s Selecting previously unselected package r-cran-lattice. 1104s Preparing to unpack .../262-r-cran-lattice_0.22-7-1_arm64.deb ... 1104s Unpacking r-cran-lattice (0.22-7-1) ... 1104s Selecting previously unselected package r-cran-matrix. 1104s Preparing to unpack .../263-r-cran-matrix_1.7-4-1_arm64.deb ... 1104s Unpacking r-cran-matrix (1.7-4-1) ... 1104s Selecting previously unselected package r-cran-abind. 1104s Preparing to unpack .../264-r-cran-abind_1.4-8-1build1_all.deb ... 1104s Unpacking r-cran-abind (1.4-8-1build1) ... 1104s Selecting previously unselected package r-bioc-s4arrays. 1104s Preparing to unpack .../265-r-bioc-s4arrays_1.6.0+dfsg-2_arm64.deb ... 1104s Unpacking r-bioc-s4arrays (1.6.0+dfsg-2) ... 1104s Selecting previously unselected package r-bioc-sparsearray. 1104s Preparing to unpack .../266-r-bioc-sparsearray_1.6.2+dfsg-2_arm64.deb ... 1104s Unpacking r-bioc-sparsearray (1.6.2+dfsg-2) ... 1104s Selecting previously unselected package r-bioc-delayedarray. 1104s Preparing to unpack .../267-r-bioc-delayedarray_0.32.0+dfsg-2_arm64.deb ... 1104s Unpacking r-bioc-delayedarray (0.32.0+dfsg-2) ... 1104s Selecting previously unselected package r-bioc-summarizedexperiment. 1104s Preparing to unpack .../268-r-bioc-summarizedexperiment_1.36.0+dfsg-2_all.deb ... 1104s Unpacking r-bioc-summarizedexperiment (1.36.0+dfsg-2) ... 1104s Selecting previously unselected package r-bioc-genomicalignments. 1104s Preparing to unpack .../269-r-bioc-genomicalignments_1.42.0-2_arm64.deb ... 1104s Unpacking r-bioc-genomicalignments (1.42.0-2) ... 1104s Selecting previously unselected package r-cran-rcurl. 1104s Preparing to unpack .../270-r-cran-rcurl_1.98-1.16+dfsg-1_arm64.deb ... 1104s Unpacking r-cran-rcurl (1.98-1.16+dfsg-1) ... 1104s Selecting previously unselected package r-cran-rjson. 1104s Preparing to unpack .../271-r-cran-rjson_0.2.23-1_arm64.deb ... 1104s Unpacking r-cran-rjson (0.2.23-1) ... 1104s Selecting previously unselected package r-cran-restfulr. 1104s Preparing to unpack .../272-r-cran-restfulr_0.0.15-1_arm64.deb ... 1104s Unpacking r-cran-restfulr (0.0.15-1) ... 1104s Selecting previously unselected package r-bioc-rtracklayer. 1105s Preparing to unpack .../273-r-bioc-rtracklayer_1.66.0-3_arm64.deb ... 1105s Unpacking r-bioc-rtracklayer (1.66.0-3) ... 1105s Selecting previously unselected package r-bioc-bsgenome. 1105s Preparing to unpack .../274-r-bioc-bsgenome_1.74.0-2_all.deb ... 1105s Unpacking r-bioc-bsgenome (1.74.0-2) ... 1105s Selecting previously unselected package r-bioc-genomicfeatures. 1105s Preparing to unpack .../275-r-bioc-genomicfeatures_1.58.0+dfsg-2_all.deb ... 1105s Unpacking r-bioc-genomicfeatures (1.58.0+dfsg-2) ... 1105s Selecting previously unselected package r-cran-registry. 1105s Preparing to unpack .../276-r-cran-registry_0.5-1-2build2_all.deb ... 1105s Unpacking r-cran-registry (0.5-1-2build2) ... 1105s Selecting previously unselected package r-cran-rngtools. 1105s Preparing to unpack .../277-r-cran-rngtools_1.5.2-1build1_all.deb ... 1105s Unpacking r-cran-rngtools (1.5.2-1build1) ... 1105s Selecting previously unselected package r-cran-cluster. 1105s Preparing to unpack .../278-r-cran-cluster_2.1.8.2-1_arm64.deb ... 1105s Unpacking r-cran-cluster (2.1.8.2-1) ... 1105s Selecting previously unselected package r-cran-gridbase. 1105s Preparing to unpack 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Selecting previously unselected package r-cran-viridislite. 1106s Preparing to unpack .../290-r-cran-viridislite_0.4.3-1_all.deb ... 1106s Unpacking r-cran-viridislite (0.4.3-1) ... 1106s Selecting previously unselected package r-cran-scales. 1106s Preparing to unpack .../291-r-cran-scales_1.4.0-1_all.deb ... 1106s Unpacking r-cran-scales (1.4.0-1) ... 1106s Selecting previously unselected package r-cran-ggplot2. 1106s Preparing to unpack .../292-r-cran-ggplot2_4.0.2+dfsg-1_all.deb ... 1106s Unpacking r-cran-ggplot2 (4.0.2+dfsg-1) ... 1106s Selecting previously unselected package r-cran-plyr. 1106s Preparing to unpack .../293-r-cran-plyr_1.8.9-1_arm64.deb ... 1106s Unpacking r-cran-plyr (1.8.9-1) ... 1106s Selecting previously unselected package r-cran-reshape2. 1106s Preparing to unpack .../294-r-cran-reshape2_1.4.4-2build2_arm64.deb ... 1106s Unpacking r-cran-reshape2 (1.4.4-2build2) ... 1106s Selecting previously unselected package r-cran-nmf. 1106s Preparing to unpack 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doesn't exist 1113s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 1113s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 1113s Setting up r-cran-lifecycle (1.0.5+dfsg-1) ... 1113s Setting up r-cran-bitops (1.0-9-1) ... 1113s Setting up r-bioc-biocversion (3.20.0-2) ... 1113s Setting up r-cran-rprojroot (2.1.1-1) ... 1113s Setting up r-cran-bit64 (4.6.0-1-4) ... 1113s Setting up r-cran-biocmanager (1.30.25+dfsg-1) ... 1113s Setting up r-bioc-zlibbioc (1.52.0+dfsg-2) ... 1113s Setting up r-cran-askpass (1.2.1-1) ... 1113s Setting up r-cran-fastmap (1.2.0-1) ... 1113s Setting up r-cran-png (0.1-8-1build2) ... 1113s Setting up r-bioc-biobase (2.66.0-2) ... 1113s Setting up r-cran-jsonlite (1.9.1+dfsg-1) ... 1113s Setting up r-cran-pkgconfig (2.0.3-2build2) ... 1113s Setting up r-cran-utf8 (1.2.4-1) ... 1113s Setting up 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r-cran-tibble (3.2.1+dfsg-3) ... 1113s Setting up r-cran-fontawesome (0.5.3-1) ... 1113s Setting up r-bioc-biocio (1.16.0+dfsg-2) ... 1113s Setting up r-cran-jquerylib (0.1.4+dfsg-5) ... 1113s Setting up r-cran-tidyselect (1.2.1+dfsg-1) ... 1113s Setting up texlive-bibtex-extra (2025.20260124-1) ... 1113s Setting up r-cran-reshape2 (1.4.4-2build2) ... 1113s Setting up r-cran-httr2 (1.1.1-2) ... 1113s Setting up r-cran-httr (1.4.7+dfsg-1) ... 1113s Setting up r-cran-nmf (0.28-1) ... 1113s Setting up r-cran-gridextra (2.3-3build2) ... 1113s Setting up r-cran-hms (1.1.4-1) ... 1113s Setting up r-cran-memoise (2.0.1-1build1) ... 1113s Setting up r-cran-promises (1.3.2+dfsg-1) ... 1113s Setting up r-cran-purrr (1.0.4-1) ... 1113s Setting up r-cran-ggdendro (0.2.0+dfsg-1) ... 1113s Setting up r-cran-blob (1.3.0-1) ... 1113s Setting up pkg-r-autopkgtest (20250812) ... 1113s Setting up r-bioc-xvector (0.46.0-2) ... 1113s Setting up r-cran-pkgbuild (1.4.8-1) ... 1113s Setting up r-cran-dplyr (1.1.4-4) ... 1113s Setting up r-cran-rsqlite (2.3.9-1) ... 1113s Setting up r-cran-progress (1.2.3-1) ... 1113s Setting up r-cran-cowplot (1.1.3+dfsg-1) ... 1113s Setting up r-cran-pkgload (1.4.1-1) ... 1113s Setting up r-bioc-ucsc.utils (1.2.0+ds-2) ... 1113s Setting up r-bioc-sparsearray (1.6.2+dfsg-2) ... 1113s Setting up r-cran-httpuv (1.6.15+dfsg-1) ... 1113s Setting up r-cran-testthat (3.2.3-1) ... 1113s Setting up r-bioc-genomeinfodb (1.42.3+dfsg-1) ... 1113s Setting up r-cran-bslib (0.9.0+dfsg-3build1) ... 1113s Setting up r-cran-tidyr (1.3.1-1) ... 1113s Setting up r-cran-ggalluvial (0.12.5-2) ... 1113s Setting up r-cran-dbplyr (2.5.1+dfsg-1) ... 1113s Setting up r-bioc-delayedarray (0.32.0+dfsg-2) ... 1113s Setting up r-bioc-biocfilecache (2.14.0+dfsg-2) ... 1113s Setting up r-bioc-genomicranges (1.58.0+dfsg-2) ... 1113s Setting up r-bioc-biostrings (2.74.1+dfsg-2) ... 1113s Setting up r-cran-shiny (1.10.0+dfsg-2) ... 1113s Setting up r-cran-rmarkdown (2.30+dfsg-1) ... 1113s Setting up r-bioc-rsamtools (2.22.0+dfsg-2) ... 1113s Setting up r-cran-bookdown (0.42+dfsg-1) ... 1113s Setting up r-bioc-summarizedexperiment (1.36.0+dfsg-2) ... 1113s Setting up r-bioc-keggrest (1.46.0+dfsg-3) ... 1113s Setting up r-bioc-annotationdbi (1.68.0-2) ... 1113s Setting up r-bioc-biomart (2.62.1+dfsg-1) ... 1113s Setting up r-bioc-biocstyle (2.34.0+dfsg-1) ... 1113s Setting up r-bioc-genomicalignments (1.42.0-2) ... 1113s Setting up r-bioc-rtracklayer (1.66.0-3) ... 1113s Setting up r-bioc-genomicfeatures (1.58.0+dfsg-2) ... 1113s Setting up r-bioc-bsgenome (1.74.0-2) ... 1113s Setting up r-bioc-variantannotation (1.52.0-2) ... 1113s Setting up r-bioc-mutationalpatterns (3.16.0+dfsg-2) ... 1113s Processing triggers for libc-bin (2.42-2ubuntu4) ... 1113s Processing triggers for man-db (2.13.1-1build1) ... 1114s Processing triggers for install-info (7.2-5) ... 1114s Processing triggers for tex-common (6.20) ... 1114s Running updmap-sys. This may take some time... done. 1114s Running mktexlsr /var/lib/texmf ... done. 1114s Building format(s) --all. 1141s This may take some time... done. 1142s autopkgtest [23:38:19]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 1142s autopkgtest [23:38:19]: test pkg-r-autopkgtest: [----------------------- 1142s Test: Try to load the R library MutationalPatterns 1142s 1142s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 1142s Copyright (C) 2025 The R Foundation for Statistical Computing 1142s Platform: aarch64-unknown-linux-gnu 1142s 1142s R is free software and comes with ABSOLUTELY NO WARRANTY. 1142s You are welcome to redistribute it under certain conditions. 1142s Type 'license()' or 'licence()' for distribution details. 1142s 1142s R is a collaborative project with many contributors. 1142s Type 'contributors()' for more information and 1142s 'citation()' on how to cite R or R packages in publications. 1142s 1142s Type 'demo()' for some demos, 'help()' for on-line help, or 1142s 'help.start()' for an HTML browser interface to help. 1142s Type 'q()' to quit R. 1142s 1142s > library('MutationalPatterns') 1142s Loading required package: GenomicRanges 1142s Loading required package: stats4 1142s Loading required package: BiocGenerics 1142s 1142s Attaching package: ‘BiocGenerics’ 1142s 1142s The following objects are masked from ‘package:stats’: 1142s 1142s IQR, mad, sd, var, xtabs 1142s 1142s The following objects are masked from ‘package:base’: 1142s 1142s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 1142s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 1142s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 1142s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 1142s Position, rank, rbind, Reduce, rownames, sapply, saveRDS, setdiff, 1142s table, tapply, union, unique, unsplit, which.max, which.min 1142s 1142s Loading required package: S4Vectors 1143s 1143s Attaching package: ‘S4Vectors’ 1143s 1143s The following object is masked from ‘package:utils’: 1143s 1143s findMatches 1143s 1143s The following objects are masked from ‘package:base’: 1143s 1143s expand.grid, I, unname 1143s 1143s Loading required package: IRanges 1144s Loading required package: GenomeInfoDb 1144s Loading required package: NMF 1144s Loading required package: registry 1144s Loading required package: rngtools 1144s Loading required package: cluster 1146s NMF - BioConductor layer [OK] | Shared memory capabilities [NO: bigmemory] | Cores 2/2 1146s To enable shared memory capabilities, try: install.extras(' 1146s NMF 1146s ') 1146s 1146s Attaching package: ‘NMF’ 1146s 1146s The following object is masked from ‘package:S4Vectors’: 1146s 1146s nrun 1146s 1146s > 1146s + grep -Rl BSgenome.Hsapiens.UCSC.hg19 tests/testthat tests/testthat.R 1146s + rm tests/testthat/test-context_potential_damage_analysis.R tests/testthat/test-type_context.R tests/testthat/test-mut_matrix.R tests/testthat/test-plot_spectrum_region.R tests/testthat/test-mut_type_occurrences.R tests/testthat/test-plot_spectrum.R tests/testthat/test-strand_occurrences.R tests/testthat/test-plot_strand.R tests/testthat/test-get_indel_context.R tests/testthat/test-calculate_lesion_segretation.R tests/testthat/test-bin_mutation_density.R tests/testthat/test-mut_matrix_stranded.R tests/testthat/test-mut_context.R tests/testthat/test-read_vcfs_as_granges.R tests/testthat/test-determine_regional_similarity.R 1146s + echo FIXME: Do not delete tests requiring bipartite once r-bioc-ccfindr is available 1146s + apt-cache show r-bioc-ccfindr 1146s FIXME: Do not delete tests requiring bipartite once r-bioc-ccfindr is available 1146s + rm tests/testthat/test-extract_signatures.R 1146s + find tests -type f -iname *.R 1146s + wc -l 1146s + NBTEST=51 1146s + [ 51 -gt 0 ] 1146s + echo Test: Run tests for MutationalPatterns 1146s + cd tests 1146s + echo Start: testthat.R 1146s + R --no-save 1146s Test: Run tests for MutationalPatterns 1146s Start: testthat.R 1146s 1146s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 1146s Copyright (C) 2025 The R Foundation for Statistical Computing 1146s Platform: aarch64-unknown-linux-gnu 1146s 1146s R is free software and comes with ABSOLUTELY NO WARRANTY. 1146s You are welcome to redistribute it under certain conditions. 1146s Type 'license()' or 'licence()' for distribution details. 1146s 1146s R is a collaborative project with many contributors. 1146s Type 'contributors()' for more information and 1146s 'citation()' on how to cite R or R packages in publications. 1146s 1146s Type 'demo()' for some demos, 'help()' for on-line help, or 1146s 'help.start()' for an HTML browser interface to help. 1146s Type 'q()' to quit R. 1146s 1146s > library(testthat) 1146s Loading required package: GenomicRanges 1146s > library(MutationalPatterns) 1146s Loading required package: stats4 1146s Loading required package: BiocGenerics 1146s 1146s Attaching package: ‘BiocGenerics’ 1146s 1146s The following objects are masked from ‘package:stats’: 1146s 1146s IQR, mad, sd, var, xtabs 1146s 1146s The following objects are masked from ‘package:base’: 1146s 1146s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 1146s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 1146s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 1146s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 1146s Position, rank, rbind, Reduce, rownames, sapply, saveRDS, setdiff, 1146s table, tapply, union, unique, unsplit, which.max, which.min 1146s 1146s Loading required package: S4Vectors 1147s 1147s Attaching package: ‘S4Vectors’ 1147s 1147s The following object is masked from ‘package:utils’: 1147s 1147s findMatches 1147s 1147s The following objects are masked from ‘package:base’: 1147s 1147s expand.grid, I, unname 1147s 1147s Loading required package: IRanges 1148s Loading required package: GenomeInfoDb 1148s Loading required package: NMF 1148s Loading required package: registry 1148s Loading required package: rngtools 1148s Loading required package: cluster 1150s NMF - BioConductor layer [OK] | Shared memory capabilities [NO: bigmemory] | Cores 2/2 1150s To enable shared memory capabilities, try: install.extras(' 1150s NMF 1150s ') 1150s 1150s Attaching package: ‘NMF’ 1150s 1150s The following object is masked from ‘package:S4Vectors’: 1150s 1150s nrun 1150s 1150s The following object is masked from ‘package:testthat’: 1150s 1150s compare 1150s 1150s > 1150s > test_check("MutationalPatterns") 1226s [ FAIL 0 | WARN 28 | SKIP 0 | PASS 305 ] 1226s 1226s [ FAIL 0 | WARN 28 | SKIP 0 | PASS 305 ] 1226s > 1226s + exit 0 1227s autopkgtest [23:39:44]: test pkg-r-autopkgtest: -----------------------] 1227s autopkgtest [23:39:44]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 1227s pkg-r-autopkgtest PASS 1227s autopkgtest [23:39:44]: @@@@@@@@@@@@@@@@@@@@ summary 1227s pkg-r-autopkgtest PASS