0s autopkgtest [17:42:06]: starting date and time: 2026-01-29 17:42:06+0000 0s autopkgtest [17:42:06]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [17:42:06]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.cr0v4474/out --timeout-copy=6000 --needs-internet=try --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-cran-rappdirs --apt-upgrade r-bioc-gypsum --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-cran-rappdirs/0.3.4-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-arm64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@sto01-arm64-7.secgroup --name adt-resolute-arm64-r-bioc-gypsum-20260129-174206-juju-7f2275-prod-proposed-migration-environment-15-eb394ca6-aa81-4734-bd56-5f88addf14b9 --image adt/ubuntu-resolute-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-autopkgtest-workers-arm64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 3s Creating nova instance adt-resolute-arm64-r-bioc-gypsum-20260129-174206-juju-7f2275-prod-proposed-migration-environment-15-eb394ca6-aa81-4734-bd56-5f88addf14b9 from image adt/ubuntu-resolute-arm64-server-20260128.img (UUID 10e9cd8e-6c32-4761-bbae-8581f2bd4c6f)... 57s autopkgtest [17:43:03]: testbed dpkg architecture: arm64 57s autopkgtest [17:43:03]: testbed apt version: 3.1.14 58s autopkgtest [17:43:04]: @@@@@@@@@@@@@@@@@@@@ test bed setup 58s autopkgtest [17:43:04]: testbed release detected to be: None 59s autopkgtest [17:43:05]: updating testbed package index (apt update) 59s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 59s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 59s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 59s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 59s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1073 kB] 60s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [106 kB] 60s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [2820 B] 60s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [25.4 kB] 60s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 Packages [125 kB] 60s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 c-n-f Metadata [4268 B] 60s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 Packages [12.3 kB] 60s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 c-n-f Metadata [328 B] 60s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 Packages [858 kB] 60s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 c-n-f Metadata [21.9 kB] 60s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 Packages [19.4 kB] 60s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 c-n-f Metadata [576 B] 63s Fetched 2374 kB in 1s (1744 kB/s) 64s Reading package lists... 64s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 64s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 65s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 65s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 65s Reading package lists... 65s Reading package lists... 66s Building dependency tree... 66s Reading state information... 66s Calculating upgrade... 67s The following packages will be upgraded: 67s libsgutils2-1.48 liburcu8t64 libxcb1 sg3-utils sg3-utils-udev tzdata 67s 6 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 67s Need to get 1437 kB of archives. 67s After this operation, 64.5 kB disk space will be freed. 67s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 tzdata all 2025c-3ubuntu3 [199 kB] 67s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 liburcu8t64 arm64 0.15.6-1 [64.8 kB] 67s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb1 arm64 1.17.0-2ubuntu1 [49.2 kB] 67s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 libsgutils2-1.48 arm64 1.48-3ubuntu2 [116 kB] 67s Get:5 http://ftpmaster.internal/ubuntu resolute/main arm64 sg3-utils arm64 1.48-3ubuntu2 [1001 kB] 67s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 sg3-utils-udev all 1.48-3ubuntu2 [6610 B] 67s dpkg-preconfigure: unable to re-open stdin: No such file or directory 67s Fetched 1437 kB in 0s (6461 kB/s) 68s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 135255 files and directories currently installed.) 68s Preparing to unpack .../0-tzdata_2025c-3ubuntu3_all.deb ... 68s Unpacking tzdata (2025c-3ubuntu3) over (2025c-3ubuntu2) ... 68s Preparing to unpack .../1-liburcu8t64_0.15.6-1_arm64.deb ... 68s Unpacking liburcu8t64:arm64 (0.15.6-1) over (0.15.5-1) ... 68s Preparing to unpack .../2-libxcb1_1.17.0-2ubuntu1_arm64.deb ... 68s Unpacking libxcb1:arm64 (1.17.0-2ubuntu1) over (1.17.0-2build1) ... 68s Preparing to unpack .../3-libsgutils2-1.48_1.48-3ubuntu2_arm64.deb ... 68s Unpacking libsgutils2-1.48:arm64 (1.48-3ubuntu2) over (1.48-3ubuntu1) ... 68s Preparing to unpack .../4-sg3-utils_1.48-3ubuntu2_arm64.deb ... 68s Unpacking sg3-utils (1.48-3ubuntu2) over (1.48-3ubuntu1) ... 68s Preparing to unpack .../5-sg3-utils-udev_1.48-3ubuntu2_all.deb ... 68s Unpacking sg3-utils-udev (1.48-3ubuntu2) over (1.48-3ubuntu1) ... 68s Setting up liburcu8t64:arm64 (0.15.6-1) ... 68s Setting up libxcb1:arm64 (1.17.0-2ubuntu1) ... 68s Setting up libsgutils2-1.48:arm64 (1.48-3ubuntu2) ... 68s Setting up tzdata (2025c-3ubuntu3) ... 69s 69s Current default time zone: 'Etc/UTC' 69s Local time is now: Thu Jan 29 17:43:14 UTC 2026. 69s Universal Time is now: Thu Jan 29 17:43:14 UTC 2026. 69s Run 'dpkg-reconfigure tzdata' if you wish to change it. 69s 69s Setting up sg3-utils (1.48-3ubuntu2) ... 69s Setting up sg3-utils-udev (1.48-3ubuntu2) ... 69s update-initramfs: deferring update (trigger activated) 69s Processing triggers for libc-bin (2.42-2ubuntu4) ... 69s Processing triggers for man-db (2.13.1-1) ... 70s Processing triggers for initramfs-tools (0.150ubuntu7) ... 70s update-initramfs: Generating /boot/initrd.img-6.18.0-9-generic 89s System running in EFI mode, skipping. 89s autopkgtest [17:43:35]: upgrading testbed (apt dist-upgrade and autopurge) 89s Reading package lists... 90s Building dependency tree... 90s Reading state information... 90s Calculating upgrade... 90s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 90s Reading package lists... 91s Building dependency tree... 91s Reading state information... 91s Solving dependencies... 91s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 92s autopkgtest [17:43:38]: rebooting testbed after setup commands that affected boot 130s autopkgtest [17:44:16]: testbed running kernel: Linux 6.18.0-9-generic #9-Ubuntu SMP PREEMPT_DYNAMIC Mon Jan 12 16:41:39 UTC 2026 133s autopkgtest [17:44:19]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-gypsum 135s Get:1 http://ftpmaster.internal/ubuntu resolute/universe r-bioc-gypsum 1.2.0+ds-2 (dsc) [2128 B] 135s Get:2 http://ftpmaster.internal/ubuntu resolute/universe r-bioc-gypsum 1.2.0+ds-2 (tar) [43.1 kB] 135s Get:3 http://ftpmaster.internal/ubuntu resolute/universe r-bioc-gypsum 1.2.0+ds-2 (diff) [3256 B] 135s gpgv: Signature made Sat Jan 11 16:44:20 2025 UTC 135s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 135s gpgv: issuer "crusoe@debian.org" 135s gpgv: Can't check signature: No public key 135s dpkg-source: warning: cannot verify inline signature for ./r-bioc-gypsum_1.2.0+ds-2.dsc: no acceptable signature found 135s autopkgtest [17:44:21]: testing package r-bioc-gypsum version 1.2.0+ds-2 136s autopkgtest [17:44:22]: build not needed 137s autopkgtest [17:44:23]: test pkg-r-autopkgtest: preparing testbed 137s Reading package lists... 137s Building dependency tree... 137s Reading state information... 138s Solving dependencies... 138s The following NEW packages will be installed: 138s build-essential cpp cpp-15 cpp-15-aarch64-linux-gnu cpp-aarch64-linux-gnu 138s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 138s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 138s g++ g++-15 g++-15-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-15 138s gcc-15-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-15 138s gfortran-15-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 138s javascript-common libasan8 libbibtex-parser-perl libblas-dev libblas3 138s libbz2-dev libcairo2 libcc1-0 libdatrie1 libdeflate-dev libdeflate0 138s libfontconfig1 libgcc-15-dev libgfortran-15-dev libgfortran5 libgomp1 138s libgraphite2-3 libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl 138s libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev 138s libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 138s libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables 138s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 138s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 138s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 138s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblerc4 138s liblsan0 liblua5.4-0 liblzma-dev libmpc3 libmpfi0 libncurses-dev 138s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 138s libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 138s libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1 libreadline-dev 138s libsharpyuv0 libsm6 libstdc++-15-dev libsynctex2 libtcl8.6 libteckit0 138s libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 138s libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 138s libxpm4 libxrender1 libxss1 libxt6t64 libzstd-dev libzzip-0-13t64 138s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 138s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 138s r-bioc-biocgenerics r-bioc-biocstyle r-bioc-biocversion r-bioc-gypsum 138s r-bioc-s4vectors r-cran-askpass r-cran-base64enc r-cran-biocmanager 138s r-cran-bit r-cran-bit64 r-cran-blob r-cran-bookdown r-cran-brio r-cran-bslib 138s r-cran-cachem r-cran-callr r-cran-cli r-cran-commonmark r-cran-cpp11 138s r-cran-crayon r-cran-curl r-cran-dbi r-cran-desc r-cran-diffobj 138s r-cran-digest r-cran-evaluate r-cran-fastmap r-cran-filelock 138s r-cran-fontawesome r-cran-fs r-cran-glue r-cran-highr r-cran-htmltools 138s r-cran-httpuv r-cran-httr2 r-cran-jquerylib r-cran-jsonlite r-cran-knitr 138s r-cran-later r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-memoise 138s r-cran-mime r-cran-openssl r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten 138s r-cran-pkgload r-cran-plogr r-cran-praise r-cran-processx r-cran-promises 138s r-cran-ps r-cran-r6 r-cran-rappdirs r-cran-rcpp r-cran-rlang 138s r-cran-rmarkdown r-cran-rprojroot r-cran-rsqlite r-cran-sass r-cran-shiny 138s r-cran-sourcetools r-cran-sys r-cran-testthat r-cran-tinytex r-cran-vctrs 138s r-cran-waldo r-cran-withr r-cran-xfun r-cran-xtable r-cran-yaml t1utils 138s tex-common texlive-base texlive-bibtex-extra texlive-binaries 138s texlive-latex-base unzip x11-common xdg-utils zip zlib1g-dev 138s 0 upgraded, 222 newly installed, 0 to remove and 0 not upgraded. 138s Need to get 335 MB of archives. 138s After this operation, 1071 MB of additional disk space will be used. 138s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 libisl23 arm64 0.27-1build1 [676 kB] 139s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 libmpc3 arm64 1.3.1-2 [55.6 kB] 139s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 cpp-15-aarch64-linux-gnu arm64 15.2.0-11ubuntu1 [11.7 MB] 142s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 cpp-15 arm64 15.2.0-11ubuntu1 [1030 B] 142s Get:5 http://ftpmaster.internal/ubuntu resolute/main arm64 cpp-aarch64-linux-gnu arm64 4:15.2.0-4ubuntu1 [5736 B] 142s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 cpp arm64 4:15.2.0-4ubuntu1 [22.4 kB] 142s Get:7 http://ftpmaster.internal/ubuntu resolute/main arm64 libcc1-0 arm64 15.2.0-11ubuntu1 [49.0 kB] 142s Get:8 http://ftpmaster.internal/ubuntu resolute/main arm64 libgomp1 arm64 15.2.0-11ubuntu1 [147 kB] 142s Get:9 http://ftpmaster.internal/ubuntu resolute/main arm64 libitm1 arm64 15.2.0-11ubuntu1 [28.0 kB] 142s Get:10 http://ftpmaster.internal/ubuntu resolute/main arm64 libasan8 arm64 15.2.0-11ubuntu1 [2920 kB] 143s Get:11 http://ftpmaster.internal/ubuntu resolute/main arm64 liblsan0 arm64 15.2.0-11ubuntu1 [1316 kB] 144s Get:12 http://ftpmaster.internal/ubuntu resolute/main arm64 libtsan2 arm64 15.2.0-11ubuntu1 [2690 kB] 144s Get:13 http://ftpmaster.internal/ubuntu resolute/main arm64 libubsan1 arm64 15.2.0-11ubuntu1 [1176 kB] 144s Get:14 http://ftpmaster.internal/ubuntu resolute/main arm64 libhwasan0 arm64 15.2.0-11ubuntu1 [1638 kB] 145s Get:15 http://ftpmaster.internal/ubuntu resolute/main arm64 libgcc-15-dev arm64 15.2.0-11ubuntu1 [2600 kB] 145s Get:16 http://ftpmaster.internal/ubuntu resolute/main arm64 gcc-15-aarch64-linux-gnu arm64 15.2.0-11ubuntu1 [23.1 MB] 151s Get:17 http://ftpmaster.internal/ubuntu resolute/main arm64 gcc-15 arm64 15.2.0-11ubuntu1 [517 kB] 151s Get:18 http://ftpmaster.internal/ubuntu resolute/main arm64 gcc-aarch64-linux-gnu arm64 4:15.2.0-4ubuntu1 [1206 B] 151s Get:19 http://ftpmaster.internal/ubuntu resolute/main arm64 gcc arm64 4:15.2.0-4ubuntu1 [5016 B] 151s Get:20 http://ftpmaster.internal/ubuntu resolute/main arm64 libstdc++-15-dev arm64 15.2.0-11ubuntu1 [2547 kB] 151s Get:21 http://ftpmaster.internal/ubuntu resolute/main arm64 g++-15-aarch64-linux-gnu arm64 15.2.0-11ubuntu1 [13.2 MB] 155s Get:22 http://ftpmaster.internal/ubuntu resolute/main arm64 g++-15 arm64 15.2.0-11ubuntu1 [24.6 kB] 155s Get:23 http://ftpmaster.internal/ubuntu resolute/main arm64 g++-aarch64-linux-gnu arm64 4:15.2.0-4ubuntu1 [956 B] 155s Get:24 http://ftpmaster.internal/ubuntu resolute/main arm64 g++ arm64 4:15.2.0-4ubuntu1 [1080 B] 155s Get:25 http://ftpmaster.internal/ubuntu resolute/main arm64 build-essential arm64 12.12ubuntu2 [5254 B] 155s Get:26 http://ftpmaster.internal/ubuntu resolute/main arm64 dctrl-tools arm64 2.24-3build4 [102 kB] 155s Get:27 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-mono all 2.37-8build1 [502 kB] 155s Get:28 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-core all 2.37-8build1 [834 kB] 155s Get:29 http://ftpmaster.internal/ubuntu resolute/main arm64 fontconfig-config arm64 2.17.1-3ubuntu1 [38.5 kB] 155s Get:30 http://ftpmaster.internal/ubuntu resolute/main arm64 libfontconfig1 arm64 2.17.1-3ubuntu1 [144 kB] 155s Get:31 http://ftpmaster.internal/ubuntu resolute/main arm64 fontconfig arm64 2.17.1-3ubuntu1 [181 kB] 155s Get:32 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1build1 [531 kB] 155s Get:33 http://ftpmaster.internal/ubuntu resolute/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-6 [119 kB] 155s Get:34 http://ftpmaster.internal/ubuntu resolute/universe arm64 fonts-lmodern all 2.005-1build1 [4788 kB] 155s Get:35 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-mathjax all 2.7.9+dfsg-1build1 [2283 kB] 155s Get:36 http://ftpmaster.internal/ubuntu resolute/main arm64 libgfortran5 arm64 15.2.0-11ubuntu1 [450 kB] 155s Get:37 http://ftpmaster.internal/ubuntu resolute/main arm64 libgfortran-15-dev arm64 15.2.0-11ubuntu1 [489 kB] 156s Get:38 http://ftpmaster.internal/ubuntu resolute/main arm64 gfortran-15-aarch64-linux-gnu arm64 15.2.0-11ubuntu1 [12.5 MB] 156s Get:39 http://ftpmaster.internal/ubuntu resolute/main arm64 gfortran-15 arm64 15.2.0-11ubuntu1 [17.9 kB] 156s Get:40 http://ftpmaster.internal/ubuntu resolute/main arm64 gfortran-aarch64-linux-gnu arm64 4:15.2.0-4ubuntu1 [1022 B] 156s Get:41 http://ftpmaster.internal/ubuntu resolute/main arm64 gfortran arm64 4:15.2.0-4ubuntu1 [1160 B] 156s Get:42 http://ftpmaster.internal/ubuntu resolute/main arm64 icu-devtools arm64 78.2-1ubuntu1 [207 kB] 156s Get:43 http://ftpmaster.internal/ubuntu resolute/main arm64 javascript-common all 12+nmu1 [4828 B] 156s Get:44 http://ftpmaster.internal/ubuntu resolute/main arm64 libio-string-perl all 1.08-4 [11.1 kB] 156s Get:45 http://ftpmaster.internal/ubuntu resolute/universe arm64 liblatex-tounicode-perl all 1.93-1 [29.2 kB] 156s Get:46 http://ftpmaster.internal/ubuntu resolute/universe arm64 libbibtex-parser-perl all 1.93+dfsg-1 [17.4 kB] 156s Get:47 http://ftpmaster.internal/ubuntu resolute/main arm64 libblas3 arm64 3.12.1-7ubuntu1 [181 kB] 156s Get:48 http://ftpmaster.internal/ubuntu resolute/main arm64 libblas-dev arm64 3.12.1-7ubuntu1 [160 kB] 156s Get:49 http://ftpmaster.internal/ubuntu resolute/main arm64 libbz2-dev arm64 1.0.8-6build1 [36.2 kB] 156s Get:50 http://ftpmaster.internal/ubuntu resolute/main arm64 libpixman-1-0 arm64 0.46.4-1 [204 kB] 156s Get:51 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-render0 arm64 1.17.0-2ubuntu1 [16.4 kB] 156s Get:52 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-shm0 arm64 1.17.0-2ubuntu1 [5938 B] 156s Get:53 http://ftpmaster.internal/ubuntu resolute/main arm64 libxrender1 arm64 1:0.9.12-1 [19.5 kB] 156s Get:54 http://ftpmaster.internal/ubuntu resolute/main arm64 libcairo2 arm64 1.18.4-3 [556 kB] 156s Get:55 http://ftpmaster.internal/ubuntu resolute/main arm64 libdatrie1 arm64 0.2.14-1 [19.6 kB] 156s Get:56 http://ftpmaster.internal/ubuntu resolute/main arm64 libdeflate0 arm64 1.23-2 [46.4 kB] 156s Get:57 http://ftpmaster.internal/ubuntu resolute/main arm64 libdeflate-dev arm64 1.23-2 [53.6 kB] 156s Get:58 http://ftpmaster.internal/ubuntu resolute/main arm64 libgraphite2-3 arm64 1.3.14-11ubuntu1 [72.1 kB] 156s Get:59 http://ftpmaster.internal/ubuntu resolute/main arm64 libharfbuzz0b arm64 12.3.1-1 [510 kB] 156s Get:60 http://ftpmaster.internal/ubuntu resolute/main arm64 x11-common all 1:7.7+24ubuntu1 [22.4 kB] 156s Get:61 http://ftpmaster.internal/ubuntu resolute/main arm64 libice6 arm64 2:1.1.1-1build1 [43.0 kB] 156s Get:62 http://ftpmaster.internal/ubuntu resolute/main arm64 libicu-dev arm64 78.2-1ubuntu1 [12.5 MB] 157s Get:63 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg-turbo8 arm64 2.1.5-4ubuntu2 [165 kB] 157s Get:64 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg-turbo8-dev arm64 2.1.5-4ubuntu2 [306 kB] 157s Get:65 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 157s Get:66 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 157s Get:67 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 157s Get:68 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-bootstrap all 3.4.1+dfsg-6 [129 kB] 157s Get:69 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-popper.js all 1.16.1+ds-6build1 [53.8 kB] 157s Get:70 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-bootstrap4 all 4.6.2+dfsg-1 [532 kB] 157s Get:71 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-d3 all 3.5.17-4build1 [136 kB] 157s Get:72 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 157s Get:73 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-highlight.js all 10.7.3+dfsg-2 [144 kB] 157s Get:74 http://ftpmaster.internal/ubuntu resolute/main arm64 libjs-jquery all 3.7.1+dfsg+~3.5.33-1build1 [321 kB] 157s Get:75 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2build1 [145 kB] 157s Get:76 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 157s Get:77 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-2 [3946 B] 157s Get:78 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 157s Get:79 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1build1 [251 kB] 157s Get:80 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-json all 0~20221030+~1.0.8-1build1 [20.6 kB] 157s Get:81 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 157s Get:82 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-prettify all 2015.12.04+dfsg-2 [41.3 kB] 157s Get:83 http://ftpmaster.internal/ubuntu resolute/universe arm64 libkpathsea6 arm64 2025.20250727.75242+ds-5build1 [65.4 kB] 157s Get:84 http://ftpmaster.internal/ubuntu resolute/main arm64 liblapack3 arm64 3.12.1-7ubuntu1 [2299 kB] 157s Get:85 http://ftpmaster.internal/ubuntu resolute/main arm64 liblapack-dev arm64 3.12.1-7ubuntu1 [4456 kB] 157s Get:86 http://ftpmaster.internal/ubuntu resolute/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu2 [174 kB] 157s Get:87 http://ftpmaster.internal/ubuntu resolute/main arm64 liblua5.4-0 arm64 5.4.8-1 [171 kB] 157s Get:88 http://ftpmaster.internal/ubuntu resolute/universe arm64 libmpfi0 arm64 1.5.4+ds-4build1 [36.4 kB] 157s Get:89 http://ftpmaster.internal/ubuntu resolute/main arm64 libncurses-dev arm64 6.6+20251231-1 [391 kB] 157s Get:90 http://ftpmaster.internal/ubuntu resolute/main arm64 libthai-data all 0.1.30-1 [155 kB] 157s Get:91 http://ftpmaster.internal/ubuntu resolute/main arm64 libthai0 arm64 0.1.30-1 [18.3 kB] 157s Get:92 http://ftpmaster.internal/ubuntu resolute/main arm64 libpango-1.0-0 arm64 1.57.0-1 [238 kB] 157s Get:93 http://ftpmaster.internal/ubuntu resolute/main arm64 libpangoft2-1.0-0 arm64 1.57.0-1 [51.5 kB] 157s Get:94 http://ftpmaster.internal/ubuntu resolute/main arm64 libpangocairo-1.0-0 arm64 1.57.0-1 [27.9 kB] 157s Get:95 http://ftpmaster.internal/ubuntu resolute/main arm64 libpaper2 arm64 2.2.5-0.3build1 [17.3 kB] 157s Get:96 http://ftpmaster.internal/ubuntu resolute/main arm64 libpaper-utils arm64 2.2.5-0.3build1 [15.4 kB] 157s Get:97 http://ftpmaster.internal/ubuntu resolute/main arm64 libpcre2-16-0 arm64 10.46-1 [225 kB] 157s Get:98 http://ftpmaster.internal/ubuntu resolute/main arm64 libpcre2-32-0 arm64 10.46-1 [213 kB] 157s Get:99 http://ftpmaster.internal/ubuntu resolute/main arm64 libpcre2-posix3 arm64 10.46-1 [7300 B] 157s Get:100 http://ftpmaster.internal/ubuntu resolute/main arm64 libpcre2-dev arm64 10.46-1 [772 kB] 157s Get:101 http://ftpmaster.internal/ubuntu resolute/main arm64 libpkgconf3 arm64 1.8.1-4build1 [33.7 kB] 157s Get:102 http://ftpmaster.internal/ubuntu resolute/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu2 [899 kB] 157s Get:103 http://ftpmaster.internal/ubuntu resolute/main arm64 libpng-dev arm64 1.6.54-1 [268 kB] 157s Get:104 http://ftpmaster.internal/ubuntu resolute/universe arm64 libpotrace0 arm64 1.16-2build2 [16.3 kB] 157s Get:105 http://ftpmaster.internal/ubuntu resolute/universe arm64 libptexenc1 arm64 2025.20250727.75242+ds-5build1 [46.2 kB] 157s Get:106 http://ftpmaster.internal/ubuntu resolute/main arm64 libreadline-dev arm64 8.3-3 [199 kB] 157s Get:107 http://ftpmaster.internal/ubuntu resolute/main arm64 libsharpyuv0 arm64 1.5.0-0.1build1 [16.7 kB] 157s Get:108 http://ftpmaster.internal/ubuntu resolute/main arm64 libsm6 arm64 2:1.2.6-1 [16.6 kB] 157s Get:109 http://ftpmaster.internal/ubuntu resolute/universe arm64 libsynctex2 arm64 2025.20250727.75242+ds-5build1 [61.4 kB] 158s Get:110 http://ftpmaster.internal/ubuntu resolute/main arm64 libtcl8.6 arm64 8.6.17+dfsg-1 [1024 kB] 158s Get:111 http://ftpmaster.internal/ubuntu resolute/universe arm64 libteckit0 arm64 2.5.13+ds-1 [393 kB] 158s Get:112 http://ftpmaster.internal/ubuntu resolute/universe arm64 libtexlua53-5 arm64 2025.20250727.75242+ds-5build1 [122 kB] 158s Get:113 http://ftpmaster.internal/ubuntu resolute/main arm64 libjbig0 arm64 2.1-6.1ubuntu3 [29.2 kB] 158s Get:114 http://ftpmaster.internal/ubuntu resolute/main arm64 libwebp7 arm64 1.5.0-0.1build1 [205 kB] 158s Get:115 http://ftpmaster.internal/ubuntu resolute/main arm64 libtiff6 arm64 4.7.0-3ubuntu3 [196 kB] 158s Get:116 http://ftpmaster.internal/ubuntu resolute/main arm64 libxft2 arm64 2.3.6-1build2 [43.2 kB] 158s Get:117 http://ftpmaster.internal/ubuntu resolute/main arm64 libxss1 arm64 1:1.2.3-1build4 [7102 B] 158s Get:118 http://ftpmaster.internal/ubuntu resolute/main arm64 libtk8.6 arm64 8.6.17-1 [811 kB] 158s Get:119 http://ftpmaster.internal/ubuntu resolute/main arm64 libxt6t64 arm64 1:1.2.1-1.3 [168 kB] 158s Get:120 http://ftpmaster.internal/ubuntu resolute/main arm64 libxmu6 arm64 2:1.1.3-4 [47.6 kB] 158s Get:121 http://ftpmaster.internal/ubuntu resolute/main arm64 libxpm4 arm64 1:3.5.17-1build3 [35.5 kB] 158s Get:122 http://ftpmaster.internal/ubuntu resolute/main arm64 libxaw7 arm64 2:1.0.16-1build1 [183 kB] 158s Get:123 http://ftpmaster.internal/ubuntu resolute/main arm64 libxi6 arm64 2:1.8.2-2 [32.4 kB] 158s Get:124 http://ftpmaster.internal/ubuntu resolute/main arm64 libzstd-dev arm64 1.5.7+dfsg-2 [349 kB] 158s Get:125 http://ftpmaster.internal/ubuntu resolute/universe arm64 libzzip-0-13t64 arm64 0.13.78+dfsg.1-0.2 [30.7 kB] 158s Get:126 http://ftpmaster.internal/ubuntu resolute/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 158s Get:127 http://ftpmaster.internal/ubuntu resolute/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 158s Get:128 http://ftpmaster.internal/ubuntu resolute/universe arm64 node-normalize.css all 8.0.1-5.1 [10.4 kB] 158s Get:129 http://ftpmaster.internal/ubuntu resolute/universe arm64 pandoc-data all 3.1.11.1-3build1 [78.8 kB] 158s Get:130 http://ftpmaster.internal/ubuntu resolute/universe arm64 pandoc arm64 3.1.11.1+ds-4 [28.0 MB] 159s Get:131 http://ftpmaster.internal/ubuntu resolute/main arm64 zip arm64 3.0-15ubuntu2 [175 kB] 159s Get:132 http://ftpmaster.internal/ubuntu resolute/main arm64 unzip arm64 6.0-29ubuntu1 [176 kB] 159s Get:133 http://ftpmaster.internal/ubuntu resolute/main arm64 xdg-utils all 1.2.1-2ubuntu2 [66.1 kB] 159s Get:134 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-base-core arm64 4.5.2-1ubuntu2 [28.6 MB] 161s Get:135 http://ftpmaster.internal/ubuntu resolute/main arm64 liblzma-dev arm64 5.8.2-2 [180 kB] 161s Get:136 http://ftpmaster.internal/ubuntu resolute/main arm64 pkgconf-bin arm64 1.8.1-4build1 [21.7 kB] 161s Get:137 http://ftpmaster.internal/ubuntu resolute/main arm64 pkgconf arm64 1.8.1-4build1 [16.8 kB] 161s Get:138 http://ftpmaster.internal/ubuntu resolute/main arm64 libtirpc-dev arm64 1.3.6+ds-1 [202 kB] 161s Get:139 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-base-dev all 4.5.2-1ubuntu2 [1880 B] 161s Get:140 http://ftpmaster.internal/ubuntu resolute/universe arm64 pkg-r-autopkgtest all 20250812 [6158 B] 161s Get:141 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-biocgenerics all 0.52.0-2 [624 kB] 161s Get:142 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-base64enc arm64 0.1-3-3build1 [28.5 kB] 161s Get:143 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-digest arm64 0.6.39-1 [196 kB] 161s Get:144 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-fastmap arm64 1.2.0-1 [70.6 kB] 161s Get:145 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rlang arm64 1.1.5-3 [1706 kB] 161s Get:146 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-htmltools arm64 0.5.8.1-1 [373 kB] 161s Get:147 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-evaluate all 1.0.3-1 [114 kB] 161s Get:148 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-xfun arm64 0.55+dfsg-1 [587 kB] 161s Get:149 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 161s Get:150 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-yaml arm64 2.3.10-1 [108 kB] 161s Get:151 http://ftpmaster.internal/ubuntu resolute/main arm64 libjs-mathjax all 2.7.9+dfsg-1build1 [6017 kB] 162s Get:152 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-knitr all 1.51+dfsg-1 [847 kB] 162s Get:153 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-cachem arm64 1.1.0-1 [74.1 kB] 162s Get:154 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-5 [13.7 kB] 162s Get:155 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-jsonlite arm64 1.9.1+dfsg-1 [445 kB] 162s Get:156 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-cli arm64 3.6.4-1 [1374 kB] 162s Get:157 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-lifecycle all 1.0.5+dfsg-1 [120 kB] 162s Get:158 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-memoise all 2.0.1-1build1 [54.5 kB] 162s Get:159 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-mime arm64 0.12-2 [35.8 kB] 162s Get:160 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-fs arm64 1.6.5+dfsg-1 [244 kB] 162s Get:161 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-r6 all 2.6.1-1 [101 kB] 162s Get:162 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 r-cran-rappdirs arm64 0.3.4-1 [50.1 kB] 162s Get:163 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-sass arm64 0.4.9+dfsg-1 [957 kB] 162s Get:164 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-bslib all 0.9.0+dfsg-3build1 [4560 kB] 162s Get:165 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-fontawesome all 0.5.3-1 [1331 kB] 163s Get:166 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-tinytex all 0.58-1 [148 kB] 163s Get:167 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-modernizr all 3.13.0-0.1build1 [100 kB] 163s Get:168 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-littler arm64 0.3.21-2 [83.6 kB] 163s Get:169 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 163s Get:170 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rcpp arm64 1.1.0-1 [2011 kB] 163s Get:171 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-later arm64 1.4.1+dfsg-1 [141 kB] 163s Get:172 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 163s Get:173 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-promises arm64 1.3.2+dfsg-1 [290 kB] 163s Get:174 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-httpuv arm64 1.6.15+dfsg-1 [489 kB] 163s Get:175 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-xtable all 1:1.8-4-2build1 [691 kB] 163s Get:176 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 163s Get:177 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-crayon all 1.5.3-1 [165 kB] 163s Get:178 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 163s Get:179 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-commonmark arm64 1.9.5-1 [130 kB] 163s Get:180 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-glue arm64 1.8.0-1 [163 kB] 163s Get:181 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 163s Get:182 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB] 163s Get:183 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rmarkdown all 2.29+dfsg-1 [1501 kB] 163s Get:184 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-bookdown all 0.42+dfsg-1 [1409 kB] 164s Get:185 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB] 164s Get:186 http://ftpmaster.internal/ubuntu resolute/universe arm64 tex-common all 6.20 [30.0 kB] 164s Get:187 http://ftpmaster.internal/ubuntu resolute/main arm64 t1utils arm64 1.41-4build4 [59.8 kB] 164s Get:188 http://ftpmaster.internal/ubuntu resolute/universe arm64 texlive-binaries arm64 2025.20250727.75242+ds-5build1 [8302 kB] 165s Get:189 http://ftpmaster.internal/ubuntu resolute/universe arm64 texlive-base all 2025.20260124-1 [22.8 MB] 168s Get:190 http://ftpmaster.internal/ubuntu resolute/universe arm64 texlive-latex-base all 2025.20260124-1 [1321 kB] 169s Get:191 http://ftpmaster.internal/ubuntu resolute/universe arm64 texlive-bibtex-extra all 2025.20260124-1 [80.6 MB] 178s Get:192 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-biocversion all 3.20.0-2 [11.1 kB] 178s Get:193 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-biocstyle all 2.34.0+dfsg-1 [451 kB] 178s Get:194 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-curl arm64 7.0.0+dfsg-1 [202 kB] 178s Get:195 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-sys arm64 3.4.3-1 [45.2 kB] 178s Get:196 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-askpass arm64 1.2.1-1 [24.8 kB] 178s Get:197 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-openssl arm64 2.3.2+dfsg-1 [406 kB] 178s Get:198 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 178s Get:199 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-httr2 all 1.1.1-2 [752 kB] 178s Get:200 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-filelock arm64 1.0.3-1 [29.7 kB] 178s Get:201 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-gypsum all 1.2.0+ds-2 [212 kB] 179s Get:202 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-s4vectors arm64 0.44.0+dfsg-2 [2054 kB] 179s Get:203 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-bit arm64 4.6.0+dfsg-1 [450 kB] 179s Get:204 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-bit64 arm64 4.6.0-1-4 [495 kB] 179s Get:205 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-blob all 1.3.0-1 [54.1 kB] 179s Get:206 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-brio arm64 1.1.5-1 [39.1 kB] 179s Get:207 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-ps arm64 1.9.0-1 [407 kB] 179s Get:208 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-processx arm64 3.8.6-1 [363 kB] 179s Get:209 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-callr all 3.7.6-1 [458 kB] 179s Get:210 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-cpp11 all 0.5.3-1 [242 kB] 179s Get:211 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-dbi all 1.2.3-1build1 [855 kB] 179s Get:212 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-desc all 1.4.3-1 [359 kB] 179s Get:213 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-diffobj arm64 0.3.5-1build1 [1154 kB] 179s Get:214 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-pkgbuild all 1.4.8-1 [219 kB] 179s Get:215 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-pkgconfig all 2.0.3-2build2 [20.4 kB] 179s Get:216 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rprojroot all 2.1.1-1 [131 kB] 179s Get:217 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-pkgload all 1.4.1-1 [252 kB] 179s Get:218 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-plogr all 0.2.0-3build2 [15.8 kB] 179s Get:219 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-praise all 1.0.0-4build2 [20.9 kB] 179s Get:220 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rsqlite arm64 2.3.9-1 [1247 kB] 179s Get:221 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-waldo all 0.6.2-1 [153 kB] 179s Get:222 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-testthat arm64 3.2.3-1 [1644 kB] 180s Preconfiguring packages ... 180s Fetched 335 MB in 41s (8141 kB/s) 180s Selecting previously unselected package libisl23:arm64. 180s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 135255 files and directories currently installed.) 180s Preparing to unpack .../000-libisl23_0.27-1build1_arm64.deb ... 180s Unpacking libisl23:arm64 (0.27-1build1) ... 180s Selecting previously unselected package libmpc3:arm64. 181s Preparing to unpack .../001-libmpc3_1.3.1-2_arm64.deb ... 181s Unpacking libmpc3:arm64 (1.3.1-2) ... 181s Selecting previously unselected package cpp-15-aarch64-linux-gnu. 181s Preparing to unpack .../002-cpp-15-aarch64-linux-gnu_15.2.0-11ubuntu1_arm64.deb ... 181s Unpacking cpp-15-aarch64-linux-gnu (15.2.0-11ubuntu1) ... 181s Selecting previously unselected package cpp-15. 181s Preparing to unpack .../003-cpp-15_15.2.0-11ubuntu1_arm64.deb ... 181s Unpacking cpp-15 (15.2.0-11ubuntu1) ... 181s Selecting previously unselected package cpp-aarch64-linux-gnu. 181s Preparing to unpack .../004-cpp-aarch64-linux-gnu_4%3a15.2.0-4ubuntu1_arm64.deb ... 181s Unpacking cpp-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 181s Selecting previously unselected package cpp. 181s Preparing to unpack .../005-cpp_4%3a15.2.0-4ubuntu1_arm64.deb ... 181s Unpacking cpp (4:15.2.0-4ubuntu1) ... 181s Selecting previously unselected package libcc1-0:arm64. 181s Preparing to unpack .../006-libcc1-0_15.2.0-11ubuntu1_arm64.deb ... 181s Unpacking libcc1-0:arm64 (15.2.0-11ubuntu1) ... 181s Selecting previously unselected package libgomp1:arm64. 181s Preparing to unpack .../007-libgomp1_15.2.0-11ubuntu1_arm64.deb ... 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182s Selecting previously unselected package gcc. 182s Preparing to unpack .../018-gcc_4%3a15.2.0-4ubuntu1_arm64.deb ... 182s Unpacking gcc (4:15.2.0-4ubuntu1) ... 183s Selecting previously unselected package libstdc++-15-dev:arm64. 183s Preparing to unpack .../019-libstdc++-15-dev_15.2.0-11ubuntu1_arm64.deb ... 183s Unpacking libstdc++-15-dev:arm64 (15.2.0-11ubuntu1) ... 183s Selecting previously unselected package g++-15-aarch64-linux-gnu. 183s Preparing to unpack .../020-g++-15-aarch64-linux-gnu_15.2.0-11ubuntu1_arm64.deb ... 183s Unpacking g++-15-aarch64-linux-gnu (15.2.0-11ubuntu1) ... 183s Selecting previously unselected package g++-15. 183s Preparing to unpack .../021-g++-15_15.2.0-11ubuntu1_arm64.deb ... 183s Unpacking g++-15 (15.2.0-11ubuntu1) ... 183s Selecting previously unselected package g++-aarch64-linux-gnu. 183s Preparing to unpack .../022-g++-aarch64-linux-gnu_4%3a15.2.0-4ubuntu1_arm64.deb ... 183s Unpacking g++-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 183s Selecting previously unselected package g++. 183s Preparing to unpack .../023-g++_4%3a15.2.0-4ubuntu1_arm64.deb ... 183s Unpacking g++ (4:15.2.0-4ubuntu1) ... 183s Selecting previously unselected package build-essential. 183s Preparing to unpack .../024-build-essential_12.12ubuntu2_arm64.deb ... 183s Unpacking build-essential (12.12ubuntu2) ... 183s Selecting previously unselected package dctrl-tools. 183s Preparing to unpack .../025-dctrl-tools_2.24-3build4_arm64.deb ... 183s Unpacking dctrl-tools (2.24-3build4) ... 184s Selecting previously unselected package fonts-dejavu-mono. 184s Preparing to unpack .../026-fonts-dejavu-mono_2.37-8build1_all.deb ... 184s Unpacking fonts-dejavu-mono (2.37-8build1) ... 184s Selecting previously unselected package fonts-dejavu-core. 184s Preparing to unpack .../027-fonts-dejavu-core_2.37-8build1_all.deb ... 184s Unpacking fonts-dejavu-core (2.37-8build1) ... 184s Selecting previously unselected package fontconfig-config. 184s Preparing to unpack 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package fonts-lmodern. 184s Preparing to unpack .../033-fonts-lmodern_2.005-1build1_all.deb ... 184s Unpacking fonts-lmodern (2.005-1build1) ... 185s Selecting previously unselected package fonts-mathjax. 185s Preparing to unpack .../034-fonts-mathjax_2.7.9+dfsg-1build1_all.deb ... 185s Unpacking fonts-mathjax (2.7.9+dfsg-1build1) ... 185s Selecting previously unselected package libgfortran5:arm64. 185s Preparing to unpack .../035-libgfortran5_15.2.0-11ubuntu1_arm64.deb ... 185s Unpacking libgfortran5:arm64 (15.2.0-11ubuntu1) ... 185s Selecting previously unselected package libgfortran-15-dev:arm64. 185s Preparing to unpack .../036-libgfortran-15-dev_15.2.0-11ubuntu1_arm64.deb ... 185s Unpacking libgfortran-15-dev:arm64 (15.2.0-11ubuntu1) ... 185s Selecting previously unselected package gfortran-15-aarch64-linux-gnu. 185s Preparing to unpack .../037-gfortran-15-aarch64-linux-gnu_15.2.0-11ubuntu1_arm64.deb ... 185s Unpacking gfortran-15-aarch64-linux-gnu (15.2.0-11ubuntu1) ... 185s Selecting previously unselected package gfortran-15. 185s Preparing to unpack .../038-gfortran-15_15.2.0-11ubuntu1_arm64.deb ... 185s Unpacking gfortran-15 (15.2.0-11ubuntu1) ... 185s Selecting previously unselected package gfortran-aarch64-linux-gnu. 185s Preparing to unpack .../039-gfortran-aarch64-linux-gnu_4%3a15.2.0-4ubuntu1_arm64.deb ... 185s Unpacking gfortran-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 185s Selecting previously unselected package gfortran. 185s Preparing to unpack .../040-gfortran_4%3a15.2.0-4ubuntu1_arm64.deb ... 185s Unpacking gfortran (4:15.2.0-4ubuntu1) ... 185s Selecting previously unselected package icu-devtools. 185s Preparing to unpack .../041-icu-devtools_78.2-1ubuntu1_arm64.deb ... 185s Unpacking icu-devtools (78.2-1ubuntu1) ... 185s Selecting previously unselected package javascript-common. 185s Preparing to unpack .../042-javascript-common_12+nmu1_all.deb ... 185s Unpacking javascript-common (12+nmu1) ... 185s Selecting previously unselected package libio-string-perl. 185s Preparing to unpack .../043-libio-string-perl_1.08-4_all.deb ... 185s Unpacking libio-string-perl (1.08-4) ... 185s Selecting previously unselected package liblatex-tounicode-perl. 185s Preparing to unpack .../044-liblatex-tounicode-perl_1.93-1_all.deb ... 185s Unpacking liblatex-tounicode-perl (1.93-1) ... 185s Selecting previously unselected package libbibtex-parser-perl. 186s Preparing to unpack .../045-libbibtex-parser-perl_1.93+dfsg-1_all.deb ... 186s Unpacking libbibtex-parser-perl (1.93+dfsg-1) ... 186s Selecting previously unselected package libblas3:arm64. 186s Preparing to unpack .../046-libblas3_3.12.1-7ubuntu1_arm64.deb ... 186s Unpacking libblas3:arm64 (3.12.1-7ubuntu1) ... 186s Selecting previously unselected package libblas-dev:arm64. 186s Preparing to unpack .../047-libblas-dev_3.12.1-7ubuntu1_arm64.deb ... 186s Unpacking libblas-dev:arm64 (3.12.1-7ubuntu1) ... 186s Selecting previously unselected package libbz2-dev:arm64. 186s Preparing to unpack .../048-libbz2-dev_1.0.8-6build1_arm64.deb ... 186s Unpacking libbz2-dev:arm64 (1.0.8-6build1) ... 186s Selecting previously unselected package libpixman-1-0:arm64. 186s Preparing to unpack .../049-libpixman-1-0_0.46.4-1_arm64.deb ... 186s Unpacking libpixman-1-0:arm64 (0.46.4-1) ... 186s Selecting previously unselected package libxcb-render0:arm64. 186s Preparing to unpack .../050-libxcb-render0_1.17.0-2ubuntu1_arm64.deb ... 186s Unpacking libxcb-render0:arm64 (1.17.0-2ubuntu1) ... 186s Selecting previously unselected package libxcb-shm0:arm64. 186s Preparing to unpack .../051-libxcb-shm0_1.17.0-2ubuntu1_arm64.deb ... 186s Unpacking libxcb-shm0:arm64 (1.17.0-2ubuntu1) ... 186s Selecting previously unselected package libxrender1:arm64. 186s Preparing to unpack .../052-libxrender1_1%3a0.9.12-1_arm64.deb ... 186s Unpacking libxrender1:arm64 (1:0.9.12-1) ... 186s Selecting previously unselected package libcairo2:arm64. 186s Preparing to unpack .../053-libcairo2_1.18.4-3_arm64.deb ... 186s Unpacking libcairo2:arm64 (1.18.4-3) ... 186s Selecting previously unselected package libdatrie1:arm64. 186s Preparing to unpack .../054-libdatrie1_0.2.14-1_arm64.deb ... 186s Unpacking libdatrie1:arm64 (0.2.14-1) ... 186s Selecting previously unselected package libdeflate0:arm64. 186s Preparing to unpack .../055-libdeflate0_1.23-2_arm64.deb ... 186s Unpacking libdeflate0:arm64 (1.23-2) ... 186s Selecting previously unselected package libdeflate-dev:arm64. 186s Preparing to unpack .../056-libdeflate-dev_1.23-2_arm64.deb ... 186s Unpacking libdeflate-dev:arm64 (1.23-2) ... 186s Selecting previously unselected package libgraphite2-3:arm64. 186s Preparing to unpack .../057-libgraphite2-3_1.3.14-11ubuntu1_arm64.deb ... 186s Unpacking libgraphite2-3:arm64 (1.3.14-11ubuntu1) ... 186s Selecting previously unselected package libharfbuzz0b:arm64. 186s Preparing to unpack .../058-libharfbuzz0b_12.3.1-1_arm64.deb ... 186s Unpacking libharfbuzz0b:arm64 (12.3.1-1) ... 186s Selecting previously unselected package x11-common. 186s Preparing to unpack .../059-x11-common_1%3a7.7+24ubuntu1_all.deb ... 186s Unpacking x11-common (1:7.7+24ubuntu1) ... 186s Selecting previously unselected package libice6:arm64. 186s Preparing to unpack .../060-libice6_2%3a1.1.1-1build1_arm64.deb ... 186s Unpacking libice6:arm64 (2:1.1.1-1build1) ... 186s Selecting previously unselected package libicu-dev:arm64. 186s Preparing to unpack .../061-libicu-dev_78.2-1ubuntu1_arm64.deb ... 186s Unpacking libicu-dev:arm64 (78.2-1ubuntu1) ... 187s Selecting previously unselected package libjpeg-turbo8:arm64. 187s Preparing to unpack .../062-libjpeg-turbo8_2.1.5-4ubuntu2_arm64.deb ... 187s Unpacking libjpeg-turbo8:arm64 (2.1.5-4ubuntu2) ... 187s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 187s Preparing to unpack .../063-libjpeg-turbo8-dev_2.1.5-4ubuntu2_arm64.deb ... 187s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-4ubuntu2) ... 187s Selecting previously unselected package libjpeg8:arm64. 187s Preparing to unpack .../064-libjpeg8_8c-2ubuntu11_arm64.deb ... 187s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 187s Selecting previously unselected package libjpeg8-dev:arm64. 187s Preparing to unpack .../065-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 187s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 187s Selecting previously unselected package libjpeg-dev:arm64. 187s Preparing to unpack .../066-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 187s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 187s Selecting previously unselected package libjs-bootstrap. 187s Preparing to unpack .../067-libjs-bootstrap_3.4.1+dfsg-6_all.deb ... 187s Unpacking libjs-bootstrap (3.4.1+dfsg-6) ... 187s Selecting previously unselected package libjs-popper.js. 187s Preparing to unpack .../068-libjs-popper.js_1.16.1+ds-6build1_all.deb ... 187s Unpacking libjs-popper.js (1.16.1+ds-6build1) ... 187s Selecting previously unselected package libjs-bootstrap4. 187s Preparing to unpack .../069-libjs-bootstrap4_4.6.2+dfsg-1_all.deb ... 187s Unpacking libjs-bootstrap4 (4.6.2+dfsg-1) ... 187s Selecting previously unselected package libjs-d3. 187s Preparing to unpack .../070-libjs-d3_3.5.17-4build1_all.deb ... 187s Unpacking libjs-d3 (3.5.17-4build1) ... 187s Selecting previously unselected package libjs-es5-shim. 187s Preparing to unpack .../071-libjs-es5-shim_4.6.7-2_all.deb ... 187s Unpacking libjs-es5-shim (4.6.7-2) ... 187s Selecting previously unselected package libjs-highlight.js. 187s Preparing to unpack .../072-libjs-highlight.js_10.7.3+dfsg-2_all.deb ... 187s Unpacking libjs-highlight.js (10.7.3+dfsg-2) ... 187s Selecting previously unselected package libjs-jquery. 187s Preparing to unpack .../073-libjs-jquery_3.7.1+dfsg+~3.5.33-1build1_all.deb ... 187s Unpacking libjs-jquery (3.7.1+dfsg+~3.5.33-1build1) ... 187s Selecting previously unselected package libjs-jquery-datatables. 187s Preparing to unpack .../074-libjs-jquery-datatables_1.11.5+dfsg-2build1_all.deb 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.../079-libjs-json_0~20221030+~1.0.8-1build1_all.deb ... 188s Unpacking libjs-json (0~20221030+~1.0.8-1build1) ... 188s Selecting previously unselected package libjs-lunr. 188s Preparing to unpack .../080-libjs-lunr_2.3.9~dfsg-2_all.deb ... 188s Unpacking libjs-lunr (2.3.9~dfsg-2) ... 188s Selecting previously unselected package libjs-prettify. 188s Preparing to unpack .../081-libjs-prettify_2015.12.04+dfsg-2_all.deb ... 188s Unpacking libjs-prettify (2015.12.04+dfsg-2) ... 188s Selecting previously unselected package libkpathsea6:arm64. 188s Preparing to unpack .../082-libkpathsea6_2025.20250727.75242+ds-5build1_arm64.deb ... 188s Unpacking libkpathsea6:arm64 (2025.20250727.75242+ds-5build1) ... 188s Selecting previously unselected package liblapack3:arm64. 188s Preparing to unpack .../083-liblapack3_3.12.1-7ubuntu1_arm64.deb ... 188s Unpacking liblapack3:arm64 (3.12.1-7ubuntu1) ... 188s Selecting previously unselected package liblapack-dev:arm64. 188s Preparing to unpack .../084-liblapack-dev_3.12.1-7ubuntu1_arm64.deb ... 188s Unpacking liblapack-dev:arm64 (3.12.1-7ubuntu1) ... 188s Selecting previously unselected package liblerc4:arm64. 188s Preparing to unpack .../085-liblerc4_4.0.0+ds-5ubuntu2_arm64.deb ... 188s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu2) ... 188s Selecting previously unselected package liblua5.4-0:arm64. 188s Preparing to unpack .../086-liblua5.4-0_5.4.8-1_arm64.deb ... 188s Unpacking liblua5.4-0:arm64 (5.4.8-1) ... 188s Selecting previously unselected package libmpfi0:arm64. 188s Preparing to unpack .../087-libmpfi0_1.5.4+ds-4build1_arm64.deb ... 188s Unpacking libmpfi0:arm64 (1.5.4+ds-4build1) ... 188s Selecting previously unselected package libncurses-dev:arm64. 188s Preparing to unpack .../088-libncurses-dev_6.6+20251231-1_arm64.deb ... 188s Unpacking libncurses-dev:arm64 (6.6+20251231-1) ... 188s Selecting previously unselected package libthai-data. 188s Preparing to unpack .../089-libthai-data_0.1.30-1_all.deb ... 188s 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Selecting previously unselected package libpaper-utils. 189s Preparing to unpack .../095-libpaper-utils_2.2.5-0.3build1_arm64.deb ... 189s Unpacking libpaper-utils (2.2.5-0.3build1) ... 189s Selecting previously unselected package libpcre2-16-0:arm64. 189s Preparing to unpack .../096-libpcre2-16-0_10.46-1_arm64.deb ... 189s Unpacking libpcre2-16-0:arm64 (10.46-1) ... 189s Selecting previously unselected package libpcre2-32-0:arm64. 189s Preparing to unpack .../097-libpcre2-32-0_10.46-1_arm64.deb ... 189s Unpacking libpcre2-32-0:arm64 (10.46-1) ... 189s Selecting previously unselected package libpcre2-posix3:arm64. 189s Preparing to unpack .../098-libpcre2-posix3_10.46-1_arm64.deb ... 189s Unpacking libpcre2-posix3:arm64 (10.46-1) ... 189s Selecting previously unselected package libpcre2-dev:arm64. 189s Preparing to unpack .../099-libpcre2-dev_10.46-1_arm64.deb ... 189s Unpacking libpcre2-dev:arm64 (10.46-1) ... 189s Selecting previously unselected package libpkgconf3:arm64. 189s Preparing to unpack .../100-libpkgconf3_1.8.1-4build1_arm64.deb ... 189s Unpacking libpkgconf3:arm64 (1.8.1-4build1) ... 189s Selecting previously unselected package zlib1g-dev:arm64. 189s Preparing to unpack .../101-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu2_arm64.deb ... 189s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu2) ... 189s Selecting previously unselected package libpng-dev:arm64. 189s Preparing to unpack .../102-libpng-dev_1.6.54-1_arm64.deb ... 189s Unpacking libpng-dev:arm64 (1.6.54-1) ... 189s Selecting previously unselected package libpotrace0:arm64. 189s Preparing to unpack .../103-libpotrace0_1.16-2build2_arm64.deb ... 189s Unpacking libpotrace0:arm64 (1.16-2build2) ... 189s Selecting previously unselected package libptexenc1:arm64. 189s Preparing to unpack .../104-libptexenc1_2025.20250727.75242+ds-5build1_arm64.deb ... 189s Unpacking libptexenc1:arm64 (2025.20250727.75242+ds-5build1) ... 189s Selecting previously unselected package libreadline-dev:arm64. 190s Preparing to unpack .../105-libreadline-dev_8.3-3_arm64.deb ... 190s Unpacking libreadline-dev:arm64 (8.3-3) ... 190s Selecting previously unselected package libsharpyuv0:arm64. 190s Preparing to unpack .../106-libsharpyuv0_1.5.0-0.1build1_arm64.deb ... 190s Unpacking libsharpyuv0:arm64 (1.5.0-0.1build1) ... 190s Selecting previously unselected package libsm6:arm64. 190s Preparing to unpack .../107-libsm6_2%3a1.2.6-1_arm64.deb ... 190s Unpacking libsm6:arm64 (2:1.2.6-1) ... 190s Selecting previously unselected package libsynctex2:arm64. 190s Preparing to unpack .../108-libsynctex2_2025.20250727.75242+ds-5build1_arm64.deb ... 190s Unpacking libsynctex2:arm64 (2025.20250727.75242+ds-5build1) ... 190s Selecting previously unselected package libtcl8.6:arm64. 190s Preparing to unpack .../109-libtcl8.6_8.6.17+dfsg-1_arm64.deb ... 190s Unpacking libtcl8.6:arm64 (8.6.17+dfsg-1) ... 190s Selecting previously unselected package libteckit0:arm64. 190s Preparing to unpack .../110-libteckit0_2.5.13+ds-1_arm64.deb ... 190s Unpacking libteckit0:arm64 (2.5.13+ds-1) ... 190s Selecting previously unselected package libtexlua53-5:arm64. 190s Preparing to unpack .../111-libtexlua53-5_2025.20250727.75242+ds-5build1_arm64.deb ... 190s Unpacking libtexlua53-5:arm64 (2025.20250727.75242+ds-5build1) ... 190s Selecting previously unselected package libjbig0:arm64. 190s Preparing to unpack .../112-libjbig0_2.1-6.1ubuntu3_arm64.deb ... 190s Unpacking libjbig0:arm64 (2.1-6.1ubuntu3) ... 190s Selecting previously unselected package libwebp7:arm64. 190s Preparing to unpack .../113-libwebp7_1.5.0-0.1build1_arm64.deb ... 190s Unpacking libwebp7:arm64 (1.5.0-0.1build1) ... 190s Selecting previously unselected package libtiff6:arm64. 190s Preparing to unpack .../114-libtiff6_4.7.0-3ubuntu3_arm64.deb ... 190s Unpacking libtiff6:arm64 (4.7.0-3ubuntu3) ... 190s Selecting previously unselected package libxft2:arm64. 190s Preparing to unpack .../115-libxft2_2.3.6-1build2_arm64.deb ... 190s Unpacking libxft2:arm64 (2.3.6-1build2) ... 190s Selecting previously unselected package libxss1:arm64. 190s Preparing to unpack .../116-libxss1_1%3a1.2.3-1build4_arm64.deb ... 190s Unpacking libxss1:arm64 (1:1.2.3-1build4) ... 190s Selecting previously unselected package libtk8.6:arm64. 190s Preparing to unpack .../117-libtk8.6_8.6.17-1_arm64.deb ... 190s Unpacking libtk8.6:arm64 (8.6.17-1) ... 190s Selecting previously unselected package libxt6t64:arm64. 190s Preparing to unpack .../118-libxt6t64_1%3a1.2.1-1.3_arm64.deb ... 190s Unpacking libxt6t64:arm64 (1:1.2.1-1.3) ... 190s Selecting previously unselected package libxmu6:arm64. 190s Preparing to unpack .../119-libxmu6_2%3a1.1.3-4_arm64.deb ... 190s Unpacking libxmu6:arm64 (2:1.1.3-4) ... 190s Selecting previously unselected package libxpm4:arm64. 190s Preparing to unpack .../120-libxpm4_1%3a3.5.17-1build3_arm64.deb ... 190s Unpacking libxpm4:arm64 (1:3.5.17-1build3) ... 190s Selecting previously unselected package libxaw7:arm64. 191s Preparing to unpack .../121-libxaw7_2%3a1.0.16-1build1_arm64.deb ... 191s Unpacking libxaw7:arm64 (2:1.0.16-1build1) ... 191s Selecting previously unselected package libxi6:arm64. 191s Preparing to unpack .../122-libxi6_2%3a1.8.2-2_arm64.deb ... 191s Unpacking libxi6:arm64 (2:1.8.2-2) ... 191s Selecting previously unselected package libzstd-dev:arm64. 191s Preparing to unpack .../123-libzstd-dev_1.5.7+dfsg-2_arm64.deb ... 191s Unpacking libzstd-dev:arm64 (1.5.7+dfsg-2) ... 191s Selecting previously unselected package libzzip-0-13t64:arm64. 191s Preparing to unpack .../124-libzzip-0-13t64_0.13.78+dfsg.1-0.2_arm64.deb ... 191s Unpacking libzzip-0-13t64:arm64 (0.13.78+dfsg.1-0.2) ... 191s Selecting previously unselected package node-bootstrap-sass. 191s Preparing to unpack .../125-node-bootstrap-sass_3.4.3-2_all.deb ... 191s Unpacking node-bootstrap-sass (3.4.3-2) ... 191s Selecting previously unselected package node-html5shiv. 191s Preparing to unpack .../126-node-html5shiv_3.7.3+dfsg-5_all.deb ... 191s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 191s Selecting previously unselected package node-normalize.css. 191s Preparing to unpack .../127-node-normalize.css_8.0.1-5.1_all.deb ... 191s Unpacking node-normalize.css (8.0.1-5.1) ... 191s Selecting previously unselected package pandoc-data. 191s Preparing to unpack .../128-pandoc-data_3.1.11.1-3build1_all.deb ... 191s Unpacking pandoc-data (3.1.11.1-3build1) ... 191s Selecting previously unselected package pandoc. 191s Preparing to unpack .../129-pandoc_3.1.11.1+ds-4_arm64.deb ... 191s Unpacking pandoc (3.1.11.1+ds-4) ... 192s Selecting previously unselected package zip. 192s Preparing to unpack .../130-zip_3.0-15ubuntu2_arm64.deb ... 192s Unpacking zip (3.0-15ubuntu2) ... 192s Selecting previously unselected package unzip. 192s Preparing to unpack .../131-unzip_6.0-29ubuntu1_arm64.deb ... 192s Unpacking unzip (6.0-29ubuntu1) ... 192s Selecting previously unselected package xdg-utils. 192s Preparing to unpack .../132-xdg-utils_1.2.1-2ubuntu2_all.deb ... 192s Unpacking xdg-utils (1.2.1-2ubuntu2) ... 192s Selecting previously unselected package r-base-core. 192s Preparing to unpack .../133-r-base-core_4.5.2-1ubuntu2_arm64.deb ... 192s Unpacking r-base-core (4.5.2-1ubuntu2) ... 193s Selecting previously unselected package liblzma-dev:arm64. 193s Preparing to unpack .../134-liblzma-dev_5.8.2-2_arm64.deb ... 193s Unpacking liblzma-dev:arm64 (5.8.2-2) ... 193s Selecting previously unselected package pkgconf-bin. 193s Preparing to unpack .../135-pkgconf-bin_1.8.1-4build1_arm64.deb ... 193s Unpacking pkgconf-bin (1.8.1-4build1) ... 193s Selecting previously unselected package pkgconf:arm64. 193s Preparing to unpack .../136-pkgconf_1.8.1-4build1_arm64.deb ... 193s Unpacking pkgconf:arm64 (1.8.1-4build1) ... 193s Selecting previously unselected package libtirpc-dev:arm64. 193s Preparing to unpack .../137-libtirpc-dev_1.3.6+ds-1_arm64.deb ... 193s Unpacking libtirpc-dev:arm64 (1.3.6+ds-1) ... 193s Selecting previously unselected package r-base-dev. 193s Preparing to unpack .../138-r-base-dev_4.5.2-1ubuntu2_all.deb ... 193s Unpacking r-base-dev (4.5.2-1ubuntu2) ... 193s Selecting previously unselected package pkg-r-autopkgtest. 193s Preparing to unpack .../139-pkg-r-autopkgtest_20250812_all.deb ... 193s Unpacking pkg-r-autopkgtest (20250812) ... 193s Selecting previously unselected package r-bioc-biocgenerics. 193s Preparing to unpack .../140-r-bioc-biocgenerics_0.52.0-2_all.deb ... 193s Unpacking r-bioc-biocgenerics (0.52.0-2) ... 193s Selecting previously unselected package r-cran-base64enc. 193s Preparing to unpack .../141-r-cran-base64enc_0.1-3-3build1_arm64.deb ... 193s Unpacking r-cran-base64enc (0.1-3-3build1) ... 193s Selecting previously unselected package r-cran-digest. 193s Preparing to unpack .../142-r-cran-digest_0.6.39-1_arm64.deb ... 193s Unpacking r-cran-digest (0.6.39-1) ... 193s Selecting previously unselected package r-cran-fastmap. 193s Preparing to unpack .../143-r-cran-fastmap_1.2.0-1_arm64.deb ... 193s Unpacking r-cran-fastmap (1.2.0-1) ... 193s Selecting previously unselected package r-cran-rlang. 193s Preparing to unpack .../144-r-cran-rlang_1.1.5-3_arm64.deb ... 193s Unpacking r-cran-rlang (1.1.5-3) ... 193s Selecting previously unselected package r-cran-htmltools. 193s Preparing to unpack .../145-r-cran-htmltools_0.5.8.1-1_arm64.deb ... 193s Unpacking r-cran-htmltools (0.5.8.1-1) ... 193s Selecting previously unselected package r-cran-evaluate. 193s Preparing to unpack .../146-r-cran-evaluate_1.0.3-1_all.deb ... 193s Unpacking r-cran-evaluate (1.0.3-1) ... 193s Selecting previously unselected package r-cran-xfun. 193s Preparing to unpack .../147-r-cran-xfun_0.55+dfsg-1_arm64.deb ... 193s Unpacking r-cran-xfun (0.55+dfsg-1) ... 193s Selecting previously unselected package r-cran-highr. 194s Preparing to unpack .../148-r-cran-highr_0.11+dfsg-1_all.deb ... 194s Unpacking r-cran-highr (0.11+dfsg-1) ... 194s Selecting previously unselected package r-cran-yaml. 194s Preparing to unpack .../149-r-cran-yaml_2.3.10-1_arm64.deb ... 194s Unpacking r-cran-yaml (2.3.10-1) ... 194s Selecting previously unselected package libjs-mathjax. 194s Preparing to unpack .../150-libjs-mathjax_2.7.9+dfsg-1build1_all.deb ... 194s Unpacking libjs-mathjax (2.7.9+dfsg-1build1) ... 194s Selecting previously unselected package r-cran-knitr. 194s Preparing to unpack .../151-r-cran-knitr_1.51+dfsg-1_all.deb ... 194s Unpacking r-cran-knitr (1.51+dfsg-1) ... 194s Selecting previously unselected package r-cran-cachem. 194s Preparing to unpack .../152-r-cran-cachem_1.1.0-1_arm64.deb ... 194s Unpacking r-cran-cachem (1.1.0-1) ... 194s Selecting previously unselected package r-cran-jquerylib. 194s Preparing to unpack .../153-r-cran-jquerylib_0.1.4+dfsg-5_all.deb ... 194s Unpacking r-cran-jquerylib (0.1.4+dfsg-5) ... 194s Selecting previously unselected package r-cran-jsonlite. 194s Preparing to unpack .../154-r-cran-jsonlite_1.9.1+dfsg-1_arm64.deb ... 194s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ... 194s Selecting previously unselected package r-cran-cli. 194s Preparing to unpack .../155-r-cran-cli_3.6.4-1_arm64.deb ... 194s Unpacking r-cran-cli (3.6.4-1) ... 194s Selecting previously unselected package r-cran-lifecycle. 194s Preparing to unpack .../156-r-cran-lifecycle_1.0.5+dfsg-1_all.deb ... 194s Unpacking r-cran-lifecycle (1.0.5+dfsg-1) ... 194s Selecting previously unselected package r-cran-memoise. 195s Preparing to unpack .../157-r-cran-memoise_2.0.1-1build1_all.deb ... 195s Unpacking r-cran-memoise (2.0.1-1build1) ... 195s Selecting previously unselected package r-cran-mime. 195s Preparing to unpack .../158-r-cran-mime_0.12-2_arm64.deb ... 195s Unpacking r-cran-mime (0.12-2) ... 195s Selecting previously unselected package r-cran-fs. 195s Preparing to unpack .../159-r-cran-fs_1.6.5+dfsg-1_arm64.deb ... 195s Unpacking r-cran-fs (1.6.5+dfsg-1) ... 195s Selecting previously unselected package r-cran-r6. 195s Preparing to unpack .../160-r-cran-r6_2.6.1-1_all.deb ... 195s Unpacking r-cran-r6 (2.6.1-1) ... 195s Selecting previously unselected package r-cran-rappdirs. 195s Preparing to unpack .../161-r-cran-rappdirs_0.3.4-1_arm64.deb ... 195s Unpacking r-cran-rappdirs (0.3.4-1) ... 195s Selecting previously unselected package r-cran-sass. 195s Preparing to unpack .../162-r-cran-sass_0.4.9+dfsg-1_arm64.deb ... 195s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 195s Selecting previously unselected package r-cran-bslib. 195s Preparing to unpack .../163-r-cran-bslib_0.9.0+dfsg-3build1_all.deb ... 195s Unpacking r-cran-bslib (0.9.0+dfsg-3build1) ... 195s Selecting previously unselected package r-cran-fontawesome. 195s Preparing to unpack .../164-r-cran-fontawesome_0.5.3-1_all.deb ... 195s Unpacking r-cran-fontawesome (0.5.3-1) ... 195s Selecting previously unselected package r-cran-tinytex. 195s Preparing to unpack .../165-r-cran-tinytex_0.58-1_all.deb ... 195s Unpacking r-cran-tinytex (0.58-1) ... 195s Selecting previously unselected package libjs-modernizr. 195s Preparing to unpack .../166-libjs-modernizr_3.13.0-0.1build1_all.deb ... 195s Unpacking libjs-modernizr (3.13.0-0.1build1) ... 195s Selecting previously unselected package r-cran-littler. 195s Preparing to unpack .../167-r-cran-littler_0.3.21-2_arm64.deb ... 195s Unpacking r-cran-littler (0.3.21-2) ... 195s Selecting previously unselected package r-cran-pkgkitten. 195s Preparing to unpack .../168-r-cran-pkgkitten_0.2.4-1_all.deb ... 195s Unpacking r-cran-pkgkitten (0.2.4-1) ... 195s Selecting previously unselected package r-cran-rcpp. 195s Preparing to unpack .../169-r-cran-rcpp_1.1.0-1_arm64.deb ... 195s Unpacking r-cran-rcpp (1.1.0-1) ... 195s Selecting previously unselected package r-cran-later. 196s Preparing to unpack .../170-r-cran-later_1.4.1+dfsg-1_arm64.deb ... 196s Unpacking r-cran-later (1.4.1+dfsg-1) ... 196s Selecting previously unselected package r-cran-magrittr. 196s Preparing to unpack .../171-r-cran-magrittr_2.0.3-1_arm64.deb ... 196s Unpacking r-cran-magrittr (2.0.3-1) ... 196s Selecting previously unselected package r-cran-promises. 196s Preparing to unpack .../172-r-cran-promises_1.3.2+dfsg-1_arm64.deb ... 196s Unpacking r-cran-promises (1.3.2+dfsg-1) ... 196s Selecting previously unselected package r-cran-httpuv. 196s Preparing to unpack .../173-r-cran-httpuv_1.6.15+dfsg-1_arm64.deb ... 196s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 196s Selecting previously unselected package r-cran-xtable. 196s Preparing to unpack .../174-r-cran-xtable_1%3a1.8-4-2build1_all.deb ... 196s Unpacking r-cran-xtable (1:1.8-4-2build1) ... 196s Selecting previously unselected package r-cran-sourcetools. 196s Preparing to unpack .../175-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 196s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 196s Selecting previously unselected package r-cran-crayon. 196s Preparing to unpack .../176-r-cran-crayon_1.5.3-1_all.deb ... 196s Unpacking r-cran-crayon (1.5.3-1) ... 196s Selecting previously unselected package r-cran-withr. 196s Preparing to unpack .../177-r-cran-withr_3.0.2+dfsg-1_all.deb ... 196s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 196s Selecting previously unselected package r-cran-commonmark. 196s Preparing to unpack .../178-r-cran-commonmark_1.9.5-1_arm64.deb ... 196s Unpacking r-cran-commonmark (1.9.5-1) ... 196s Selecting previously unselected package r-cran-glue. 197s Preparing to unpack .../179-r-cran-glue_1.8.0-1_arm64.deb ... 197s Unpacking r-cran-glue (1.8.0-1) ... 197s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 197s Preparing to unpack .../180-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 197s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 197s Selecting previously unselected package r-cran-shiny. 197s Preparing to unpack .../181-r-cran-shiny_1.10.0+dfsg-2_all.deb ... 197s Unpacking r-cran-shiny (1.10.0+dfsg-2) ... 197s Selecting previously unselected package r-cran-rmarkdown. 197s Preparing to unpack .../182-r-cran-rmarkdown_2.29+dfsg-1_all.deb ... 197s Unpacking r-cran-rmarkdown (2.29+dfsg-1) ... 197s Selecting previously unselected package r-cran-bookdown. 197s Preparing to unpack .../183-r-cran-bookdown_0.42+dfsg-1_all.deb ... 197s Unpacking r-cran-bookdown (0.42+dfsg-1) ... 197s Selecting previously unselected package r-cran-biocmanager. 197s Preparing to unpack .../184-r-cran-biocmanager_1.30.25+dfsg-1_all.deb ... 197s Unpacking r-cran-biocmanager (1.30.25+dfsg-1) ... 197s Selecting previously unselected package tex-common. 197s Preparing to unpack .../185-tex-common_6.20_all.deb ... 197s Unpacking tex-common (6.20) ... 197s Selecting previously unselected package t1utils. 197s Preparing to unpack .../186-t1utils_1.41-4build4_arm64.deb ... 197s Unpacking t1utils (1.41-4build4) ... 197s Selecting previously unselected package texlive-binaries. 197s Preparing to unpack .../187-texlive-binaries_2025.20250727.75242+ds-5build1_arm64.deb ... 197s Unpacking texlive-binaries (2025.20250727.75242+ds-5build1) ... 197s Selecting previously unselected package texlive-base. 197s Preparing to unpack .../188-texlive-base_2025.20260124-1_all.deb ... 197s Unpacking texlive-base (2025.20260124-1) ... 199s Selecting previously unselected package texlive-latex-base. 199s Preparing to unpack .../189-texlive-latex-base_2025.20260124-1_all.deb ... 199s Unpacking texlive-latex-base (2025.20260124-1) ... 199s Selecting previously unselected package texlive-bibtex-extra. 199s Preparing to unpack .../190-texlive-bibtex-extra_2025.20260124-1_all.deb ... 199s Unpacking texlive-bibtex-extra (2025.20260124-1) ... 201s Selecting previously unselected package r-bioc-biocversion. 201s Preparing to unpack .../191-r-bioc-biocversion_3.20.0-2_all.deb ... 201s Unpacking r-bioc-biocversion (3.20.0-2) ... 201s Selecting previously unselected package r-bioc-biocstyle. 201s Preparing to unpack .../192-r-bioc-biocstyle_2.34.0+dfsg-1_all.deb ... 201s Unpacking r-bioc-biocstyle (2.34.0+dfsg-1) ... 201s Selecting previously unselected package r-cran-curl. 202s Preparing to unpack .../193-r-cran-curl_7.0.0+dfsg-1_arm64.deb ... 202s Unpacking r-cran-curl (7.0.0+dfsg-1) ... 202s Selecting previously unselected package r-cran-sys. 202s Preparing to unpack .../194-r-cran-sys_3.4.3-1_arm64.deb ... 202s Unpacking r-cran-sys (3.4.3-1) ... 202s Selecting previously unselected package r-cran-askpass. 202s Preparing to unpack .../195-r-cran-askpass_1.2.1-1_arm64.deb ... 202s Unpacking r-cran-askpass (1.2.1-1) ... 202s Selecting previously unselected package r-cran-openssl. 202s Preparing to unpack .../196-r-cran-openssl_2.3.2+dfsg-1_arm64.deb ... 202s Unpacking r-cran-openssl (2.3.2+dfsg-1) ... 202s Selecting previously unselected package r-cran-vctrs. 202s Preparing to unpack .../197-r-cran-vctrs_0.6.5-1_arm64.deb ... 202s Unpacking r-cran-vctrs (0.6.5-1) ... 202s Selecting previously unselected package r-cran-httr2. 202s Preparing to unpack .../198-r-cran-httr2_1.1.1-2_all.deb ... 202s Unpacking r-cran-httr2 (1.1.1-2) ... 202s Selecting previously unselected package r-cran-filelock. 202s Preparing to unpack .../199-r-cran-filelock_1.0.3-1_arm64.deb ... 202s Unpacking r-cran-filelock (1.0.3-1) ... 202s Selecting previously unselected package r-bioc-gypsum. 202s Preparing to unpack .../200-r-bioc-gypsum_1.2.0+ds-2_all.deb ... 202s Unpacking r-bioc-gypsum (1.2.0+ds-2) ... 202s Selecting previously unselected package r-bioc-s4vectors. 202s Preparing to unpack .../201-r-bioc-s4vectors_0.44.0+dfsg-2_arm64.deb ... 202s Unpacking r-bioc-s4vectors (0.44.0+dfsg-2) ... 202s Selecting previously unselected package r-cran-bit. 202s Preparing to unpack .../202-r-cran-bit_4.6.0+dfsg-1_arm64.deb ... 202s Unpacking r-cran-bit (4.6.0+dfsg-1) ... 202s Selecting previously unselected package r-cran-bit64. 202s Preparing to unpack .../203-r-cran-bit64_4.6.0-1-4_arm64.deb ... 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r-cran-jquerylib (0.1.4+dfsg-5) ... 210s Setting up texlive-bibtex-extra (2025.20260124-1) ... 210s Setting up r-cran-httr2 (1.1.1-2) ... 210s Setting up r-bioc-gypsum (1.2.0+ds-2) ... 210s Setting up r-cran-memoise (2.0.1-1build1) ... 210s Setting up r-cran-promises (1.3.2+dfsg-1) ... 210s Setting up r-cran-blob (1.3.0-1) ... 210s Setting up pkg-r-autopkgtest (20250812) ... 210s Setting up r-cran-pkgbuild (1.4.8-1) ... 210s Setting up r-cran-rsqlite (2.3.9-1) ... 210s Setting up r-cran-pkgload (1.4.1-1) ... 210s Setting up r-cran-httpuv (1.6.15+dfsg-1) ... 210s Setting up r-cran-testthat (3.2.3-1) ... 210s Setting up r-cran-bslib (0.9.0+dfsg-3build1) ... 210s Setting up r-cran-shiny (1.10.0+dfsg-2) ... 210s Setting up r-cran-rmarkdown (2.29+dfsg-1) ... 210s Setting up r-cran-bookdown (0.42+dfsg-1) ... 210s Setting up r-bioc-biocstyle (2.34.0+dfsg-1) ... 210s Processing triggers for libc-bin (2.42-2ubuntu4) ... 210s Processing triggers for man-db (2.13.1-1) ... 212s Processing triggers for install-info (7.2-5) ... 212s Processing triggers for tex-common (6.20) ... 212s Running updmap-sys. This may take some time... done. 212s Running mktexlsr /var/lib/texmf ... done. 212s Building format(s) --all. 239s This may take some time... done. 241s autopkgtest [17:46:07]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 241s autopkgtest [17:46:07]: test pkg-r-autopkgtest: [----------------------- 241s Test: Try to load the R library gypsum 241s 241s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 241s Copyright (C) 2025 The R Foundation for Statistical Computing 241s Platform: aarch64-unknown-linux-gnu 241s 241s R is free software and comes with ABSOLUTELY NO WARRANTY. 241s You are welcome to redistribute it under certain conditions. 241s Type 'license()' or 'licence()' for distribution details. 241s 241s R is a collaborative project with many contributors. 241s Type 'contributors()' for more information and 241s 'citation()' on how to cite R or R packages in publications. 241s 241s Type 'demo()' for some demos, 'help()' for on-line help, or 241s 'help.start()' for an HTML browser interface to help. 241s Type 'q()' to quit R. 241s 241s > library('gypsum') 241s > 241s Test: Run tests for gypsum 241s Start: testthat.R 241s 241s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 241s Copyright (C) 2025 The R Foundation for Statistical Computing 241s Platform: aarch64-unknown-linux-gnu 241s 241s R is free software and comes with ABSOLUTELY NO WARRANTY. 241s You are welcome to redistribute it under certain conditions. 241s Type 'license()' or 'licence()' for distribution details. 241s 241s R is a collaborative project with many contributors. 241s Type 'contributors()' for more information and 241s 'citation()' on how to cite R or R packages in publications. 241s 241s Type 'demo()' for some demos, 'help()' for on-line help, or 241s 'help.start()' for an HTML browser interface to help. 241s Type 'q()' to quit R. 241s 242s > library(testthat) 242s > library(gypsum) 242s > test_check("gypsum") 271s [ FAIL 0 | WARN 0 | SKIP 13 | PASS 251 ] 271s 271s ══ Skipped tests (13) ══════════════════════════════════════════════════════════ 271s • is.na(gh_token) is TRUE (13): 'test-accessToken.R:5:5', 'test-latest.R:5:5', 271s 'test-permissions.R:5:5', 'test-probation.R:5:5', 'test-probation.R:28:5', 271s 'test-quota.R:5:5', 'test-quota.R:23:5', 'test-remove.R:5:5', 271s 'test-unlockProject.R:5:5', 'test-upload.R:5:5', 'test-upload.R:55:5', 271s 'test-upload.R:89:5', 'test-upload.R:107:5' 271s 271s [ FAIL 0 | WARN 0 | SKIP 13 | PASS 251 ] 271s > 271s autopkgtest [17:46:37]: test pkg-r-autopkgtest: -----------------------] 272s autopkgtest [17:46:38]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 272s pkg-r-autopkgtest PASS 272s autopkgtest [17:46:38]: @@@@@@@@@@@@@@@@@@@@ summary 272s pkg-r-autopkgtest PASS