0s autopkgtest [22:45:11]: starting date and time: 2026-02-09 22:45:11+0000 0s autopkgtest [22:45:11]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [22:45:11]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.celj6hup/out --timeout-copy=6000 --needs-internet=try --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:lattice --apt-upgrade r-bioc-geneplotter --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=lattice/0.22-9-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-arm64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@sto01-arm64-2.secgroup --name adt-resolute-arm64-r-bioc-geneplotter-20260209-224511-juju-7f2275-prod-proposed-migration-environment-15-deeb873b-e16e-404f-ac8b-12ea1db3f29c --image adt/ubuntu-resolute-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-autopkgtest-workers-arm64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 3s Creating nova instance adt-resolute-arm64-r-bioc-geneplotter-20260209-224511-juju-7f2275-prod-proposed-migration-environment-15-deeb873b-e16e-404f-ac8b-12ea1db3f29c from image adt/ubuntu-resolute-arm64-server-20260209.img (UUID 793037ca-75af-461b-82de-f8081300b2e3)... 116s autopkgtest [22:47:07]: testbed dpkg architecture: arm64 116s autopkgtest [22:47:07]: testbed apt version: 3.1.15 117s autopkgtest [22:47:08]: @@@@@@@@@@@@@@@@@@@@ test bed setup 117s autopkgtest [22:47:08]: testbed release detected to be: None 117s autopkgtest [22:47:08]: updating testbed package index (apt update) 118s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 118s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 118s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 118s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 118s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1645 kB] 121s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [176 kB] 121s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [29.4 kB] 121s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 Packages [246 kB] 121s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 c-n-f Metadata [6216 B] 121s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 c-n-f Metadata [304 B] 121s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 Packages [1580 kB] 124s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 c-n-f Metadata [32.0 kB] 124s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 Packages [21.7 kB] 124s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 c-n-f Metadata [688 B] 125s Fetched 3862 kB in 6s (613 kB/s) 126s Reading package lists... 127s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 127s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 127s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 127s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 128s Reading package lists... 128s Reading package lists... 128s Building dependency tree... 128s Reading state information... 128s Calculating upgrade... 129s The following packages will be upgraded: 129s cryptsetup-bin dracut-install iproute2 iptables libcryptsetup12 libip4tc2 129s libip6tc2 libxtables12 wget 129s 9 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 129s Need to get 2534 kB of archives. 129s After this operation, 18.4 kB of additional disk space will be used. 129s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 iptables arm64 1.8.11-2ubuntu3 [386 kB] 129s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 libip4tc2 arm64 1.8.11-2ubuntu3 [24.3 kB] 129s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 libip6tc2 arm64 1.8.11-2ubuntu3 [24.7 kB] 129s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 libxtables12 arm64 1.8.11-2ubuntu3 [36.7 kB] 129s Get:5 http://ftpmaster.internal/ubuntu resolute/main arm64 iproute2 arm64 6.18.0-1ubuntu1 [1171 kB] 131s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 libcryptsetup12 arm64 2:2.8.0-1ubuntu3 [274 kB] 131s Get:7 http://ftpmaster.internal/ubuntu resolute/main arm64 wget arm64 1.25.0-2ubuntu4 [344 kB] 131s Get:8 http://ftpmaster.internal/ubuntu resolute/main arm64 cryptsetup-bin arm64 2:2.8.0-1ubuntu3 [227 kB] 131s Get:9 http://ftpmaster.internal/ubuntu resolute/main arm64 dracut-install arm64 109-11ubuntu1 [45.3 kB] 131s dpkg-preconfigure: unable to re-open stdin: No such file or directory 132s Fetched 2534 kB in 2s (1104 kB/s) 132s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 136597 files and directories currently installed.) 132s Preparing to unpack .../0-iptables_1.8.11-2ubuntu3_arm64.deb ... 132s Unpacking iptables (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 132s Preparing to unpack .../1-libip4tc2_1.8.11-2ubuntu3_arm64.deb ... 132s Unpacking libip4tc2:arm64 (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 132s Preparing to unpack .../2-libip6tc2_1.8.11-2ubuntu3_arm64.deb ... 132s Unpacking libip6tc2:arm64 (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 132s Preparing to unpack .../3-libxtables12_1.8.11-2ubuntu3_arm64.deb ... 132s Unpacking libxtables12:arm64 (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 132s Preparing to unpack .../4-iproute2_6.18.0-1ubuntu1_arm64.deb ... 132s Unpacking iproute2 (6.18.0-1ubuntu1) over (6.16.0-1ubuntu3) ... 133s Preparing to unpack .../5-libcryptsetup12_2%3a2.8.0-1ubuntu3_arm64.deb ... 133s Unpacking libcryptsetup12:arm64 (2:2.8.0-1ubuntu3) over (2:2.8.0-1ubuntu2) ... 133s Preparing to unpack .../6-wget_1.25.0-2ubuntu4_arm64.deb ... 133s Unpacking wget (1.25.0-2ubuntu4) over (1.25.0-2ubuntu3) ... 133s Preparing to unpack .../7-cryptsetup-bin_2%3a2.8.0-1ubuntu3_arm64.deb ... 133s Unpacking cryptsetup-bin (2:2.8.0-1ubuntu3) over (2:2.8.0-1ubuntu2) ... 133s Preparing to unpack .../8-dracut-install_109-11ubuntu1_arm64.deb ... 133s Unpacking dracut-install (109-11ubuntu1) over (109-9ubuntu1) ... 133s Setting up libip4tc2:arm64 (1.8.11-2ubuntu3) ... 133s Setting up wget (1.25.0-2ubuntu4) ... 133s Setting up libip6tc2:arm64 (1.8.11-2ubuntu3) ... 133s Setting up libxtables12:arm64 (1.8.11-2ubuntu3) ... 133s Setting up dracut-install (109-11ubuntu1) ... 133s Setting up libcryptsetup12:arm64 (2:2.8.0-1ubuntu3) ... 133s Setting up cryptsetup-bin (2:2.8.0-1ubuntu3) ... 133s Setting up iptables (1.8.11-2ubuntu3) ... 133s Setting up iproute2 (6.18.0-1ubuntu1) ... 133s Processing triggers for man-db (2.13.1-1build1) ... 134s Processing triggers for install-info (7.2-5) ... 134s Processing triggers for libc-bin (2.42-2ubuntu4) ... 135s autopkgtest [22:47:26]: upgrading testbed (apt dist-upgrade and autopurge) 135s Reading package lists... 135s Building dependency tree... 135s Reading state information... 135s Calculating upgrade... 136s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 136s Reading package lists... 136s Building dependency tree... 136s Reading state information... 136s Solving dependencies... 137s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 139s autopkgtest [22:47:30]: testbed running kernel: Linux 6.19.0-3-generic #3-Ubuntu SMP PREEMPT_DYNAMIC Fri Jan 23 19:46:27 UTC 2026 139s autopkgtest [22:47:30]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-geneplotter 143s Get:1 http://ftpmaster.internal/ubuntu resolute/universe r-bioc-geneplotter 1.84.0+dfsg-2 (dsc) [2263 B] 143s Get:2 http://ftpmaster.internal/ubuntu resolute/universe r-bioc-geneplotter 1.84.0+dfsg-2 (tar) [1377 kB] 143s Get:3 http://ftpmaster.internal/ubuntu resolute/universe r-bioc-geneplotter 1.84.0+dfsg-2 (diff) [3976 B] 143s gpgv: Signature made Mon Jan 13 13:50:52 2025 UTC 143s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 143s gpgv: issuer "crusoe@debian.org" 143s gpgv: Can't check signature: No public key 143s dpkg-source: warning: cannot verify inline signature for ./r-bioc-geneplotter_1.84.0+dfsg-2.dsc: no acceptable signature found 143s autopkgtest [22:47:34]: testing package r-bioc-geneplotter version 1.84.0+dfsg-2 143s autopkgtest [22:47:34]: build not needed 145s autopkgtest [22:47:36]: test pkg-r-autopkgtest: preparing testbed 145s Reading package lists... 145s Building dependency tree... 145s Reading state information... 145s Solving dependencies... 146s The following NEW packages will be installed: 146s build-essential cpp cpp-15 cpp-15-aarch64-linux-gnu cpp-aarch64-linux-gnu 146s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 146s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 146s g++ g++-15 g++-15-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-15 146s gcc-15-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-15 146s gfortran-15-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 146s javascript-common libasan8 libbibtex-parser-perl libblas-dev libblas3 146s libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev libdatrie1 146s libdeflate-dev libdeflate0 libfontconfig1 libgcc-15-dev libgfortran-15-dev 146s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhwasan0 libice6 146s libicu-dev libio-string-perl libisl23 libitm1 libjbig0 libjpeg-dev 146s libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap 146s libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery 146s libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json 146s libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr 146s libjs-popper.js libjs-prettify libjs-sifter.js 146s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 146s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 146s libmpfi0 libncurses-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 146s libpaper-utils libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev 146s libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1 146s libreadline-dev libsharpyuv0 libsm6 libstdc++-15-dev libsynctex2 libtcl8.6 146s libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev 146s libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 146s libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6t64 libzstd-dev 146s libzzip-0-13t64 linux-libc-dev node-bootstrap-sass node-html5shiv 146s node-normalize.css pandoc pandoc-data pkg-r-autopkgtest pkgconf pkgconf-bin 146s r-base-core r-base-dev r-bioc-annotate r-bioc-annotationdbi r-bioc-biobase 146s r-bioc-biocgenerics r-bioc-biocstyle r-bioc-biocversion r-bioc-biostrings 146s r-bioc-geneplotter r-bioc-genomeinfodb r-bioc-genomeinfodbdata 146s r-bioc-iranges r-bioc-keggrest r-bioc-s4vectors r-bioc-ucsc.utils 146s r-bioc-xvector r-bioc-zlibbioc r-cran-askpass r-cran-base64enc 146s r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-blob r-cran-bookdown 146s r-cran-bslib r-cran-cachem r-cran-cli r-cran-commonmark r-cran-cpp11 146s r-cran-crayon r-cran-curl r-cran-dbi r-cran-digest r-cran-evaluate 146s r-cran-fastmap r-cran-fontawesome r-cran-fs r-cran-glue r-cran-highr 146s r-cran-htmltools r-cran-httpuv r-cran-httr r-cran-jquerylib r-cran-jsonlite 146s r-cran-knitr r-cran-later r-cran-lattice r-cran-lifecycle r-cran-littler 146s r-cran-magrittr r-cran-memoise r-cran-mime r-cran-openssl r-cran-pkgconfig 146s r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-promises r-cran-r6 146s r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rlang 146s r-cran-rmarkdown r-cran-rsqlite r-cran-sass r-cran-shiny r-cran-sourcetools 146s r-cran-sys r-cran-tinytex r-cran-vctrs r-cran-withr r-cran-xfun r-cran-xml 146s r-cran-xtable r-cran-yaml rpcsvc-proto t1utils tex-common texlive-base 146s texlive-bibtex-extra texlive-binaries texlive-latex-base unzip x11-common 146s xdg-utils zip zlib1g-dev 146s 0 upgraded, 229 newly installed, 0 to remove and 0 not upgraded. 146s Need to get 380 MB of archives. 146s After this operation, 1142 MB of additional disk space will be used. 146s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 libc-dev-bin arm64 2.42-2ubuntu4 [22.5 kB] 146s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 linux-libc-dev arm64 6.19.0-3.3 [1819 kB] 150s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 libcrypt-dev arm64 1:4.5.1-1 [123 kB] 150s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 rpcsvc-proto arm64 1.4.3-1build1 [65.6 kB] 150s Get:5 http://ftpmaster.internal/ubuntu resolute/main arm64 libc6-dev arm64 2.42-2ubuntu4 [1765 kB] 155s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 libisl23 arm64 0.27-1build1 [676 kB] 156s Get:7 http://ftpmaster.internal/ubuntu resolute/main arm64 libmpc3 arm64 1.3.1-2 [55.6 kB] 156s Get:8 http://ftpmaster.internal/ubuntu resolute/main arm64 cpp-15-aarch64-linux-gnu arm64 15.2.0-12ubuntu1 [11.7 MB] 175s Get:9 http://ftpmaster.internal/ubuntu resolute/main arm64 cpp-15 arm64 15.2.0-12ubuntu1 [1030 B] 175s Get:10 http://ftpmaster.internal/ubuntu resolute/main arm64 cpp-aarch64-linux-gnu arm64 4:15.2.0-4ubuntu1 [5736 B] 175s Get:11 http://ftpmaster.internal/ubuntu resolute/main arm64 cpp arm64 4:15.2.0-4ubuntu1 [22.4 kB] 175s Get:12 http://ftpmaster.internal/ubuntu resolute/main arm64 libcc1-0 arm64 15.2.0-12ubuntu1 [49.0 kB] 175s Get:13 http://ftpmaster.internal/ubuntu resolute/main arm64 libgomp1 arm64 15.2.0-12ubuntu1 [147 kB] 175s Get:14 http://ftpmaster.internal/ubuntu resolute/main arm64 libitm1 arm64 15.2.0-12ubuntu1 [27.8 kB] 175s Get:15 http://ftpmaster.internal/ubuntu resolute/main arm64 libasan8 arm64 15.2.0-12ubuntu1 [2920 kB] 180s Get:16 http://ftpmaster.internal/ubuntu resolute/main arm64 liblsan0 arm64 15.2.0-12ubuntu1 [1316 kB] 182s Get:17 http://ftpmaster.internal/ubuntu resolute/main arm64 libtsan2 arm64 15.2.0-12ubuntu1 [2688 kB] 187s Get:18 http://ftpmaster.internal/ubuntu resolute/main arm64 libubsan1 arm64 15.2.0-12ubuntu1 [1175 kB] 188s Get:19 http://ftpmaster.internal/ubuntu resolute/main arm64 libhwasan0 arm64 15.2.0-12ubuntu1 [1638 kB] 191s Get:20 http://ftpmaster.internal/ubuntu resolute/main arm64 libgcc-15-dev arm64 15.2.0-12ubuntu1 [2600 kB] 196s Get:21 http://ftpmaster.internal/ubuntu resolute/main arm64 gcc-15-aarch64-linux-gnu arm64 15.2.0-12ubuntu1 [23.1 MB] 237s Get:22 http://ftpmaster.internal/ubuntu resolute/main arm64 gcc-15 arm64 15.2.0-12ubuntu1 [519 kB] 237s Get:23 http://ftpmaster.internal/ubuntu resolute/main arm64 gcc-aarch64-linux-gnu arm64 4:15.2.0-4ubuntu1 [1206 B] 237s Get:24 http://ftpmaster.internal/ubuntu resolute/main arm64 gcc arm64 4:15.2.0-4ubuntu1 [5016 B] 237s Get:25 http://ftpmaster.internal/ubuntu resolute/main arm64 libstdc++-15-dev arm64 15.2.0-12ubuntu1 [2549 kB] 242s Get:26 http://ftpmaster.internal/ubuntu resolute/main arm64 g++-15-aarch64-linux-gnu arm64 15.2.0-12ubuntu1 [13.2 MB] 266s Get:27 http://ftpmaster.internal/ubuntu resolute/main arm64 g++-15 arm64 15.2.0-12ubuntu1 [25.3 kB] 266s Get:28 http://ftpmaster.internal/ubuntu resolute/main arm64 g++-aarch64-linux-gnu arm64 4:15.2.0-4ubuntu1 [956 B] 266s Get:29 http://ftpmaster.internal/ubuntu resolute/main arm64 g++ arm64 4:15.2.0-4ubuntu1 [1080 B] 266s Get:30 http://ftpmaster.internal/ubuntu resolute/main arm64 build-essential arm64 12.12ubuntu2 [5254 B] 266s Get:31 http://ftpmaster.internal/ubuntu resolute/main arm64 dctrl-tools arm64 2.24-3build4 [102 kB] 266s Get:32 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-mono all 2.37-8build1 [502 kB] 267s Get:33 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-core all 2.37-8build1 [834 kB] 268s Get:34 http://ftpmaster.internal/ubuntu resolute/main arm64 fontconfig-config arm64 2.17.1-3ubuntu1 [38.5 kB] 268s Get:35 http://ftpmaster.internal/ubuntu resolute/main arm64 libfontconfig1 arm64 2.17.1-3ubuntu1 [144 kB] 268s Get:36 http://ftpmaster.internal/ubuntu resolute/main arm64 fontconfig arm64 2.17.1-3ubuntu1 [181 kB] 268s Get:37 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1build1 [531 kB] 269s Get:38 http://ftpmaster.internal/ubuntu resolute/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-6 [119 kB] 269s Get:39 http://ftpmaster.internal/ubuntu resolute/universe arm64 fonts-lmodern all 2.005-1build1 [4788 kB] 276s Get:40 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-mathjax all 2.7.9+dfsg-1build1 [2283 kB] 280s Get:41 http://ftpmaster.internal/ubuntu resolute/main arm64 libgfortran5 arm64 15.2.0-12ubuntu1 [451 kB] 280s Get:42 http://ftpmaster.internal/ubuntu resolute/main arm64 libgfortran-15-dev arm64 15.2.0-12ubuntu1 [490 kB] 280s Get:43 http://ftpmaster.internal/ubuntu resolute/main arm64 gfortran-15-aarch64-linux-gnu arm64 15.2.0-12ubuntu1 [12.5 MB] 303s Get:44 http://ftpmaster.internal/ubuntu resolute/main arm64 gfortran-15 arm64 15.2.0-12ubuntu1 [18.1 kB] 303s Get:45 http://ftpmaster.internal/ubuntu resolute/main arm64 gfortran-aarch64-linux-gnu arm64 4:15.2.0-4ubuntu1 [1022 B] 303s Get:46 http://ftpmaster.internal/ubuntu resolute/main arm64 gfortran arm64 4:15.2.0-4ubuntu1 [1160 B] 303s Get:47 http://ftpmaster.internal/ubuntu resolute/main arm64 icu-devtools arm64 78.2-1ubuntu1 [207 kB] 303s Get:48 http://ftpmaster.internal/ubuntu resolute/main arm64 javascript-common all 12+nmu1build1 [4864 B] 303s Get:49 http://ftpmaster.internal/ubuntu resolute/main arm64 libio-string-perl all 1.08-4 [11.1 kB] 303s Get:50 http://ftpmaster.internal/ubuntu resolute/universe arm64 liblatex-tounicode-perl all 1.93-1 [29.2 kB] 303s Get:51 http://ftpmaster.internal/ubuntu resolute/universe arm64 libbibtex-parser-perl all 1.93+dfsg-1 [17.4 kB] 303s Get:52 http://ftpmaster.internal/ubuntu resolute/main arm64 libblas3 arm64 3.12.1-7ubuntu1 [181 kB] 303s Get:53 http://ftpmaster.internal/ubuntu resolute/main arm64 libblas-dev arm64 3.12.1-7ubuntu1 [160 kB] 303s Get:54 http://ftpmaster.internal/ubuntu resolute/main arm64 libbz2-dev arm64 1.0.8-6build2 [34.9 kB] 303s Get:55 http://ftpmaster.internal/ubuntu resolute/main arm64 libpixman-1-0 arm64 0.46.4-1 [204 kB] 303s Get:56 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-render0 arm64 1.17.0-2ubuntu1 [16.4 kB] 303s Get:57 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-shm0 arm64 1.17.0-2ubuntu1 [5938 B] 303s Get:58 http://ftpmaster.internal/ubuntu resolute/main arm64 libxrender1 arm64 1:0.9.12-1 [19.5 kB] 303s Get:59 http://ftpmaster.internal/ubuntu resolute/main arm64 libcairo2 arm64 1.18.4-3 [556 kB] 304s Get:60 http://ftpmaster.internal/ubuntu resolute/main arm64 libdatrie1 arm64 0.2.14-1 [19.6 kB] 304s Get:61 http://ftpmaster.internal/ubuntu resolute/main arm64 libdeflate0 arm64 1.23-2build1 [46.8 kB] 304s Get:62 http://ftpmaster.internal/ubuntu resolute/main arm64 libdeflate-dev arm64 1.23-2build1 [54.3 kB] 304s Get:63 http://ftpmaster.internal/ubuntu resolute/main arm64 libgraphite2-3 arm64 1.3.14-11ubuntu1 [72.1 kB] 304s Get:64 http://ftpmaster.internal/ubuntu resolute/main arm64 libharfbuzz0b arm64 12.3.2-1 [510 kB] 304s Get:65 http://ftpmaster.internal/ubuntu resolute/main arm64 x11-common all 1:7.7+24ubuntu1 [22.4 kB] 304s Get:66 http://ftpmaster.internal/ubuntu resolute/main arm64 libice6 arm64 2:1.1.1-1build1 [43.0 kB] 304s Get:67 http://ftpmaster.internal/ubuntu resolute/main arm64 libicu-dev arm64 78.2-1ubuntu1 [12.5 MB] 327s Get:68 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg-turbo8 arm64 2.1.5-4ubuntu3 [161 kB] 327s Get:69 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg-turbo8-dev arm64 2.1.5-4ubuntu3 [301 kB] 327s Get:70 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 327s Get:71 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 327s Get:72 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 327s Get:73 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-bootstrap all 3.4.1+dfsg-6 [129 kB] 327s Get:74 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-popper.js all 1.16.1+ds-6build1 [53.8 kB] 327s Get:75 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-bootstrap4 all 4.6.2+dfsg-1 [532 kB] 328s Get:76 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-d3 all 3.5.17-4build1 [136 kB] 328s Get:77 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 328s Get:78 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-highlight.js all 10.7.3+dfsg-2 [144 kB] 328s Get:79 http://ftpmaster.internal/ubuntu resolute/main arm64 libjs-jquery all 3.7.1+dfsg+~3.5.33-1build1 [321 kB] 328s Get:80 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2build1 [145 kB] 328s Get:81 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 328s Get:82 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-2 [3946 B] 328s Get:83 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 328s Get:84 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1build1 [251 kB] 328s Get:85 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-json all 0~20221030+~1.0.8-1build1 [20.6 kB] 328s Get:86 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 328s Get:87 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-prettify all 2015.12.04+dfsg-3 [41.4 kB] 328s Get:88 http://ftpmaster.internal/ubuntu resolute/universe arm64 libkpathsea6 arm64 2025.20250727.75242+ds-5build1 [65.4 kB] 328s Get:89 http://ftpmaster.internal/ubuntu resolute/main arm64 liblapack3 arm64 3.12.1-7ubuntu1 [2299 kB] 334s Get:90 http://ftpmaster.internal/ubuntu resolute/main arm64 liblapack-dev arm64 3.12.1-7ubuntu1 [4456 kB] 341s Get:91 http://ftpmaster.internal/ubuntu resolute/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu2 [174 kB] 342s Get:92 http://ftpmaster.internal/ubuntu resolute/main arm64 liblua5.4-0 arm64 5.4.8-1 [171 kB] 342s Get:93 http://ftpmaster.internal/ubuntu resolute/universe arm64 libmpfi0 arm64 1.5.4+ds-4build1 [36.4 kB] 342s Get:94 http://ftpmaster.internal/ubuntu resolute/main arm64 libncurses-dev arm64 6.6+20251231-1 [391 kB] 342s Get:95 http://ftpmaster.internal/ubuntu resolute/main arm64 libthai-data all 0.1.30-1 [155 kB] 342s Get:96 http://ftpmaster.internal/ubuntu resolute/main arm64 libthai0 arm64 0.1.30-1 [18.3 kB] 342s Get:97 http://ftpmaster.internal/ubuntu resolute/main arm64 libpango-1.0-0 arm64 1.57.0-1 [238 kB] 342s Get:98 http://ftpmaster.internal/ubuntu resolute/main arm64 libpangoft2-1.0-0 arm64 1.57.0-1 [51.5 kB] 342s Get:99 http://ftpmaster.internal/ubuntu resolute/main arm64 libpangocairo-1.0-0 arm64 1.57.0-1 [27.9 kB] 342s Get:100 http://ftpmaster.internal/ubuntu resolute/main arm64 libpaper2 arm64 2.2.5-0.3build1 [17.3 kB] 342s Get:101 http://ftpmaster.internal/ubuntu resolute/main arm64 libpaper-utils arm64 2.2.5-0.3build1 [15.4 kB] 342s Get:102 http://ftpmaster.internal/ubuntu resolute/main arm64 libpcre2-16-0 arm64 10.46-1 [225 kB] 342s Get:103 http://ftpmaster.internal/ubuntu resolute/main arm64 libpcre2-32-0 arm64 10.46-1 [213 kB] 342s Get:104 http://ftpmaster.internal/ubuntu resolute/main arm64 libpcre2-posix3 arm64 10.46-1 [7300 B] 342s Get:105 http://ftpmaster.internal/ubuntu resolute/main arm64 libpcre2-dev arm64 10.46-1 [772 kB] 344s Get:106 http://ftpmaster.internal/ubuntu resolute/main arm64 libpkgconf3 arm64 1.8.1-4build1 [33.7 kB] 344s Get:107 http://ftpmaster.internal/ubuntu resolute/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu2 [899 kB] 345s Get:108 http://ftpmaster.internal/ubuntu resolute/main arm64 libpng-dev arm64 1.6.54-1 [268 kB] 345s Get:109 http://ftpmaster.internal/ubuntu resolute/universe arm64 libpotrace0 arm64 1.16-2build2 [16.3 kB] 345s Get:110 http://ftpmaster.internal/ubuntu resolute/universe arm64 libptexenc1 arm64 2025.20250727.75242+ds-5build1 [46.2 kB] 345s Get:111 http://ftpmaster.internal/ubuntu resolute/main arm64 libreadline-dev arm64 8.3-3 [199 kB] 345s Get:112 http://ftpmaster.internal/ubuntu resolute/main arm64 libsharpyuv0 arm64 1.5.0-0.1build1 [16.7 kB] 345s Get:113 http://ftpmaster.internal/ubuntu resolute/main arm64 libsm6 arm64 2:1.2.6-1build1 [16.8 kB] 345s Get:114 http://ftpmaster.internal/ubuntu resolute/universe arm64 libsynctex2 arm64 2025.20250727.75242+ds-5build1 [61.4 kB] 345s Get:115 http://ftpmaster.internal/ubuntu resolute/main arm64 libtcl8.6 arm64 8.6.17+dfsg-1build1 [983 kB] 347s Get:116 http://ftpmaster.internal/ubuntu resolute/universe arm64 libteckit0 arm64 2.5.13+ds-1 [393 kB] 347s Get:117 http://ftpmaster.internal/ubuntu resolute/universe arm64 libtexlua53-5 arm64 2025.20250727.75242+ds-5build1 [122 kB] 347s Get:118 http://ftpmaster.internal/ubuntu resolute/main arm64 libjbig0 arm64 2.1-6.1ubuntu3 [29.2 kB] 347s Get:119 http://ftpmaster.internal/ubuntu resolute/main arm64 libwebp7 arm64 1.5.0-0.1build1 [205 kB] 347s Get:120 http://ftpmaster.internal/ubuntu resolute/main arm64 libtiff6 arm64 4.7.0-3ubuntu3 [196 kB] 347s Get:121 http://ftpmaster.internal/ubuntu resolute/main arm64 libxft2 arm64 2.3.6-1build2 [43.2 kB] 347s Get:122 http://ftpmaster.internal/ubuntu resolute/main arm64 libxss1 arm64 1:1.2.3-1build4 [7102 B] 347s Get:123 http://ftpmaster.internal/ubuntu resolute/main arm64 libtk8.6 arm64 8.6.17-1 [811 kB] 348s Get:124 http://ftpmaster.internal/ubuntu resolute/main arm64 libxt6t64 arm64 1:1.2.1-1.3 [168 kB] 348s Get:125 http://ftpmaster.internal/ubuntu resolute/main arm64 libxmu6 arm64 2:1.1.3-4 [47.6 kB] 348s Get:126 http://ftpmaster.internal/ubuntu resolute/main arm64 libxpm4 arm64 1:3.5.17-1build3 [35.5 kB] 348s Get:127 http://ftpmaster.internal/ubuntu resolute/main arm64 libxaw7 arm64 2:1.0.16-1build1 [183 kB] 348s Get:128 http://ftpmaster.internal/ubuntu resolute/main arm64 libxi6 arm64 2:1.8.2-2 [32.4 kB] 348s Get:129 http://ftpmaster.internal/ubuntu resolute/main arm64 libzstd-dev arm64 1.5.7+dfsg-3 [349 kB] 348s Get:130 http://ftpmaster.internal/ubuntu resolute/universe arm64 libzzip-0-13t64 arm64 0.13.78+dfsg.1-0.2 [30.7 kB] 348s Get:131 http://ftpmaster.internal/ubuntu resolute/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 348s Get:132 http://ftpmaster.internal/ubuntu resolute/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 348s Get:133 http://ftpmaster.internal/ubuntu resolute/universe arm64 node-normalize.css all 8.0.1-5.1 [10.4 kB] 348s Get:134 http://ftpmaster.internal/ubuntu resolute/universe arm64 pandoc-data all 3.1.11.1-3build1 [78.8 kB] 348s Get:135 http://ftpmaster.internal/ubuntu resolute/universe arm64 pandoc arm64 3.1.11.1+ds-4 [28.0 MB] 405s Get:136 http://ftpmaster.internal/ubuntu resolute/main arm64 zip arm64 3.0-15ubuntu3 [170 kB] 405s Get:137 http://ftpmaster.internal/ubuntu resolute/main arm64 unzip arm64 6.0-29ubuntu1 [176 kB] 405s Get:138 http://ftpmaster.internal/ubuntu resolute/main arm64 xdg-utils all 1.2.1-2ubuntu2 [66.1 kB] 405s Get:139 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-base-core arm64 4.5.2-1ubuntu2 [28.6 MB] 488s Get:140 http://ftpmaster.internal/ubuntu resolute/main arm64 liblzma-dev arm64 5.8.2-2 [180 kB] 488s Get:141 http://ftpmaster.internal/ubuntu resolute/main arm64 pkgconf-bin arm64 1.8.1-4build1 [21.7 kB] 488s Get:142 http://ftpmaster.internal/ubuntu resolute/main arm64 pkgconf arm64 1.8.1-4build1 [16.8 kB] 488s Get:143 http://ftpmaster.internal/ubuntu resolute/main arm64 libtirpc-dev arm64 1.3.6+ds-1 [202 kB] 488s Get:144 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-base-dev all 4.5.2-1ubuntu2 [1880 B] 488s Get:145 http://ftpmaster.internal/ubuntu resolute/universe arm64 pkg-r-autopkgtest all 20250812 [6158 B] 488s Get:146 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-biocgenerics all 0.52.0-2 [624 kB] 489s Get:147 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-biobase arm64 2.66.0-2 [2331 kB] 493s Get:148 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-s4vectors arm64 0.44.0+dfsg-2 [2054 kB] 496s Get:149 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-iranges arm64 2.40.1-3 [2301 kB] 500s Get:150 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-dbi all 1.2.3-1build1 [855 kB] 501s Get:151 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-bit arm64 4.6.0+dfsg-1 [450 kB] 501s Get:152 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-bit64 arm64 4.6.0-1-4 [495 kB] 501s Get:153 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rlang arm64 1.1.5-3 [1706 kB] 504s Get:154 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-cli arm64 3.6.4-1 [1374 kB] 505s Get:155 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-glue arm64 1.8.0-1 [163 kB] 505s Get:156 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-lifecycle all 1.0.5+dfsg-1 [120 kB] 505s Get:157 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 507s Get:158 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-blob all 1.3.0-1 [54.1 kB] 507s Get:159 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-fastmap arm64 1.2.0-1 [70.6 kB] 507s Get:160 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-cachem arm64 1.1.0-1 [74.1 kB] 507s Get:161 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-memoise all 2.0.1-1build1 [54.5 kB] 507s Get:162 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-pkgconfig all 2.0.3-2build2 [20.4 kB] 507s Get:163 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-plogr all 0.2.0-3build2 [15.8 kB] 507s Get:164 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-cpp11 all 0.5.3-1 [242 kB] 507s Get:165 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rsqlite arm64 2.3.9-1 [1247 kB] 509s Get:166 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-curl arm64 7.0.0+dfsg-1 [202 kB] 509s Get:167 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-jsonlite arm64 1.9.1+dfsg-1 [445 kB] 509s Get:168 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-mime arm64 0.12-2 [35.8 kB] 509s Get:169 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-sys arm64 3.4.3-1 [45.2 kB] 509s Get:170 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-askpass arm64 1.2.1-1 [24.8 kB] 509s Get:171 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-openssl arm64 2.3.2+dfsg-1 [406 kB] 509s Get:172 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-r6 all 2.6.1-1 [101 kB] 509s Get:173 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 509s Get:174 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-png arm64 0.1-8-1build2 [40.1 kB] 509s Get:175 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB] 509s Get:176 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-xvector arm64 0.46.0-2 [618 kB] 510s Get:177 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-ucsc.utils all 1.2.0+ds-2 [77.2 kB] 510s Get:178 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB] 531s Get:179 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-genomeinfodb all 1.42.3+dfsg-1 [3887 kB] 537s Get:180 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-crayon all 1.5.3-1 [165 kB] 537s Get:181 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-biostrings arm64 2.74.1+dfsg-2 [13.3 MB] 558s Get:182 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-keggrest all 1.46.0+dfsg-3 [183 kB] 558s Get:183 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-annotationdbi all 1.68.0-2 [4857 kB] 567s Get:184 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-xml arm64 3.99-0.20-1 [1749 kB] 569s Get:185 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-xtable all 1:1.8-4-2build1 [691 kB] 570s Get:186 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-annotate all 1.84.0+dfsg-2 [1870 kB] 573s Get:187 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-base64enc arm64 0.1-3-3build1 [28.5 kB] 573s Get:188 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-digest arm64 0.6.39-1 [196 kB] 573s Get:189 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-htmltools arm64 0.5.8.1-1 [373 kB] 573s Get:190 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-evaluate all 1.0.5-1 [117 kB] 573s Get:191 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-xfun arm64 0.55+dfsg-1 [587 kB] 573s Get:192 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 573s Get:193 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-yaml arm64 2.3.10-1 [108 kB] 574s Get:194 http://ftpmaster.internal/ubuntu resolute/main arm64 libjs-mathjax all 2.7.9+dfsg-1build1 [6017 kB] 582s Get:195 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-knitr all 1.51+dfsg-1 [847 kB] 584s Get:196 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-5 [13.7 kB] 584s Get:197 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-fs arm64 1.6.5+dfsg-1 [244 kB] 584s Get:198 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rappdirs arm64 0.3.3-1build1 [49.5 kB] 584s Get:199 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-sass arm64 0.4.9+dfsg-1 [957 kB] 585s Get:200 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-bslib all 0.9.0+dfsg-3build1 [4560 kB] 592s Get:201 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-fontawesome all 0.5.3-1 [1331 kB] 594s Get:202 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-tinytex all 0.58-1 [148 kB] 594s Get:203 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-modernizr all 3.13.0-0.1build1 [100 kB] 594s Get:204 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-littler arm64 0.3.22-1 [85.1 kB] 594s Get:205 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 594s Get:206 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rcpp arm64 1.1.0-1 [2011 kB] 598s Get:207 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-later arm64 1.4.1+dfsg-1 [141 kB] 598s Get:208 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 598s Get:209 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-promises arm64 1.3.2+dfsg-1 [290 kB] 598s Get:210 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-httpuv arm64 1.6.15+dfsg-1 [489 kB] 598s Get:211 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 598s Get:212 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 598s Get:213 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-commonmark arm64 1.9.5-1 [130 kB] 598s Get:214 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 598s Get:215 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB] 604s Get:216 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rmarkdown all 2.30+dfsg-1 [1501 kB] 606s Get:217 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-bookdown all 0.42+dfsg-1 [1409 kB] 608s Get:218 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB] 608s Get:219 http://ftpmaster.internal/ubuntu resolute/universe arm64 tex-common all 6.20 [30.0 kB] 608s Get:220 http://ftpmaster.internal/ubuntu resolute/main arm64 t1utils arm64 1.41-4build4 [59.8 kB] 608s Get:221 http://ftpmaster.internal/ubuntu resolute/universe arm64 texlive-binaries arm64 2025.20250727.75242+ds-5build1 [8302 kB] 619s Get:222 http://ftpmaster.internal/ubuntu resolute/universe arm64 texlive-base all 2025.20260124-1 [22.8 MB] 654s Get:223 http://ftpmaster.internal/ubuntu resolute/universe arm64 texlive-latex-base all 2025.20260124-1 [1321 kB] 658s Get:224 http://ftpmaster.internal/ubuntu resolute/universe arm64 texlive-bibtex-extra all 2025.20260124-1 [80.6 MB] 794s Get:225 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-biocversion all 3.20.0-2 [11.1 kB] 794s Get:226 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-biocstyle all 2.34.0+dfsg-1 [451 kB] 794s Get:227 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 r-cran-lattice arm64 0.22-9-1 [1399 kB] 796s Get:228 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build2 [54.0 kB] 796s Get:229 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-geneplotter all 1.84.0+dfsg-2 [1508 kB] 799s Preconfiguring packages ... 799s Fetched 380 MB in 10min 53s (583 kB/s) 799s Selecting previously unselected package libc-dev-bin. 799s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 136600 files and directories currently installed.) 799s Preparing to unpack .../000-libc-dev-bin_2.42-2ubuntu4_arm64.deb ... 799s Unpacking libc-dev-bin (2.42-2ubuntu4) ... 799s Selecting previously unselected package linux-libc-dev:arm64. 799s Preparing to unpack .../001-linux-libc-dev_6.19.0-3.3_arm64.deb ... 799s Unpacking linux-libc-dev:arm64 (6.19.0-3.3) ... 799s Selecting previously unselected package libcrypt-dev:arm64. 799s Preparing to unpack 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cpp-15-aarch64-linux-gnu (15.2.0-12ubuntu1) ... 800s Selecting previously unselected package cpp-15. 800s Preparing to unpack .../008-cpp-15_15.2.0-12ubuntu1_arm64.deb ... 800s Unpacking cpp-15 (15.2.0-12ubuntu1) ... 800s Selecting previously unselected package cpp-aarch64-linux-gnu. 800s Preparing to unpack .../009-cpp-aarch64-linux-gnu_4%3a15.2.0-4ubuntu1_arm64.deb ... 800s Unpacking cpp-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 800s Selecting previously unselected package cpp. 800s Preparing to unpack .../010-cpp_4%3a15.2.0-4ubuntu1_arm64.deb ... 800s Unpacking cpp (4:15.2.0-4ubuntu1) ... 800s Selecting previously unselected package libcc1-0:arm64. 800s Preparing to unpack .../011-libcc1-0_15.2.0-12ubuntu1_arm64.deb ... 800s Unpacking libcc1-0:arm64 (15.2.0-12ubuntu1) ... 800s Selecting previously unselected package libgomp1:arm64. 800s Preparing to unpack .../012-libgomp1_15.2.0-12ubuntu1_arm64.deb ... 800s Unpacking libgomp1:arm64 (15.2.0-12ubuntu1) ... 800s Selecting previously 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fontconfig-config (2.17.1-3ubuntu1) ... 802s Selecting previously unselected package libfontconfig1:arm64. 802s Preparing to unpack .../034-libfontconfig1_2.17.1-3ubuntu1_arm64.deb ... 802s Unpacking libfontconfig1:arm64 (2.17.1-3ubuntu1) ... 802s Selecting previously unselected package fontconfig. 802s Preparing to unpack .../035-fontconfig_2.17.1-3ubuntu1_arm64.deb ... 802s Unpacking fontconfig (2.17.1-3ubuntu1) ... 802s Selecting previously unselected package fonts-font-awesome. 802s Preparing to unpack .../036-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1build1_all.deb ... 802s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1build1) ... 802s Selecting previously unselected package fonts-glyphicons-halflings. 802s Preparing to unpack .../037-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-6_all.deb ... 802s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-6) ... 802s Selecting previously unselected package fonts-lmodern. 802s Preparing to unpack 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Selecting previously unselected package x11-common. 804s Preparing to unpack .../064-x11-common_1%3a7.7+24ubuntu1_all.deb ... 804s Unpacking x11-common (1:7.7+24ubuntu1) ... 804s Selecting previously unselected package libice6:arm64. 804s Preparing to unpack .../065-libice6_2%3a1.1.1-1build1_arm64.deb ... 804s Unpacking libice6:arm64 (2:1.1.1-1build1) ... 804s Selecting previously unselected package libicu-dev:arm64. 804s Preparing to unpack .../066-libicu-dev_78.2-1ubuntu1_arm64.deb ... 804s Unpacking libicu-dev:arm64 (78.2-1ubuntu1) ... 804s Selecting previously unselected package libjpeg-turbo8:arm64. 804s Preparing to unpack .../067-libjpeg-turbo8_2.1.5-4ubuntu3_arm64.deb ... 804s Unpacking libjpeg-turbo8:arm64 (2.1.5-4ubuntu3) ... 804s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 804s Preparing to unpack .../068-libjpeg-turbo8-dev_2.1.5-4ubuntu3_arm64.deb ... 804s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-4ubuntu3) ... 804s Selecting previously unselected package libjpeg8:arm64. 804s Preparing to unpack .../069-libjpeg8_8c-2ubuntu11_arm64.deb ... 804s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 804s Selecting previously unselected package libjpeg8-dev:arm64. 804s Preparing to unpack .../070-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 804s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 804s Selecting previously unselected package libjpeg-dev:arm64. 804s Preparing to unpack .../071-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 804s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 804s Selecting previously unselected package libjs-bootstrap. 804s Preparing to unpack .../072-libjs-bootstrap_3.4.1+dfsg-6_all.deb ... 804s Unpacking libjs-bootstrap (3.4.1+dfsg-6) ... 804s Selecting previously unselected package libjs-popper.js. 804s Preparing to unpack .../073-libjs-popper.js_1.16.1+ds-6build1_all.deb ... 805s Unpacking libjs-popper.js (1.16.1+ds-6build1) ... 805s Selecting previously unselected package libjs-bootstrap4. 805s Preparing to unpack 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Preparing to unpack .../105-libpkgconf3_1.8.1-4build1_arm64.deb ... 806s Unpacking libpkgconf3:arm64 (1.8.1-4build1) ... 806s Selecting previously unselected package zlib1g-dev:arm64. 806s Preparing to unpack .../106-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu2_arm64.deb ... 806s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu2) ... 806s Selecting previously unselected package libpng-dev:arm64. 806s Preparing to unpack .../107-libpng-dev_1.6.54-1_arm64.deb ... 806s Unpacking libpng-dev:arm64 (1.6.54-1) ... 806s Selecting previously unselected package libpotrace0:arm64. 806s Preparing to unpack .../108-libpotrace0_1.16-2build2_arm64.deb ... 806s Unpacking libpotrace0:arm64 (1.16-2build2) ... 806s Selecting previously unselected package libptexenc1:arm64. 806s Preparing to unpack .../109-libptexenc1_2025.20250727.75242+ds-5build1_arm64.deb ... 806s Unpacking libptexenc1:arm64 (2025.20250727.75242+ds-5build1) ... 806s Selecting previously unselected package 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libteckit0:arm64. 807s Preparing to unpack .../115-libteckit0_2.5.13+ds-1_arm64.deb ... 807s Unpacking libteckit0:arm64 (2.5.13+ds-1) ... 807s Selecting previously unselected package libtexlua53-5:arm64. 807s Preparing to unpack .../116-libtexlua53-5_2025.20250727.75242+ds-5build1_arm64.deb ... 807s Unpacking libtexlua53-5:arm64 (2025.20250727.75242+ds-5build1) ... 807s Selecting previously unselected package libjbig0:arm64. 807s Preparing to unpack .../117-libjbig0_2.1-6.1ubuntu3_arm64.deb ... 807s Unpacking libjbig0:arm64 (2.1-6.1ubuntu3) ... 807s Selecting previously unselected package libwebp7:arm64. 807s Preparing to unpack .../118-libwebp7_1.5.0-0.1build1_arm64.deb ... 807s Unpacking libwebp7:arm64 (1.5.0-0.1build1) ... 807s Selecting previously unselected package libtiff6:arm64. 807s Preparing to unpack .../119-libtiff6_4.7.0-3ubuntu3_arm64.deb ... 807s Unpacking libtiff6:arm64 (4.7.0-3ubuntu3) ... 807s Selecting previously unselected package libxft2:arm64. 807s Preparing to unpack .../120-libxft2_2.3.6-1build2_arm64.deb ... 807s Unpacking libxft2:arm64 (2.3.6-1build2) ... 807s Selecting previously unselected package libxss1:arm64. 807s Preparing to unpack .../121-libxss1_1%3a1.2.3-1build4_arm64.deb ... 807s Unpacking libxss1:arm64 (1:1.2.3-1build4) ... 807s Selecting previously unselected package libtk8.6:arm64. 807s Preparing to unpack .../122-libtk8.6_8.6.17-1_arm64.deb ... 807s Unpacking libtk8.6:arm64 (8.6.17-1) ... 807s Selecting previously unselected package libxt6t64:arm64. 807s Preparing to unpack .../123-libxt6t64_1%3a1.2.1-1.3_arm64.deb ... 807s Unpacking libxt6t64:arm64 (1:1.2.1-1.3) ... 807s Selecting previously unselected package libxmu6:arm64. 807s Preparing to unpack .../124-libxmu6_2%3a1.1.3-4_arm64.deb ... 807s Unpacking libxmu6:arm64 (2:1.1.3-4) ... 807s Selecting previously unselected package libxpm4:arm64. 807s Preparing to unpack .../125-libxpm4_1%3a3.5.17-1build3_arm64.deb ... 807s Unpacking libxpm4:arm64 (1:3.5.17-1build3) ... 807s Selecting previously unselected package libxaw7:arm64. 807s Preparing to unpack .../126-libxaw7_2%3a1.0.16-1build1_arm64.deb ... 807s Unpacking libxaw7:arm64 (2:1.0.16-1build1) ... 807s Selecting previously unselected package libxi6:arm64. 807s Preparing to unpack .../127-libxi6_2%3a1.8.2-2_arm64.deb ... 807s Unpacking libxi6:arm64 (2:1.8.2-2) ... 807s Selecting previously unselected package libzstd-dev:arm64. 807s Preparing to unpack .../128-libzstd-dev_1.5.7+dfsg-3_arm64.deb ... 807s Unpacking libzstd-dev:arm64 (1.5.7+dfsg-3) ... 807s Selecting previously unselected package libzzip-0-13t64:arm64. 807s Preparing to unpack .../129-libzzip-0-13t64_0.13.78+dfsg.1-0.2_arm64.deb ... 807s Unpacking libzzip-0-13t64:arm64 (0.13.78+dfsg.1-0.2) ... 807s Selecting previously unselected package node-bootstrap-sass. 807s Preparing to unpack .../130-node-bootstrap-sass_3.4.3-2_all.deb ... 807s Unpacking node-bootstrap-sass (3.4.3-2) ... 807s Selecting previously unselected package node-html5shiv. 807s Preparing to unpack .../131-node-html5shiv_3.7.3+dfsg-5_all.deb ... 807s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 807s Selecting previously unselected package node-normalize.css. 807s Preparing to unpack .../132-node-normalize.css_8.0.1-5.1_all.deb ... 807s Unpacking node-normalize.css (8.0.1-5.1) ... 807s Selecting previously unselected package pandoc-data. 808s Preparing to unpack .../133-pandoc-data_3.1.11.1-3build1_all.deb ... 808s Unpacking pandoc-data (3.1.11.1-3build1) ... 808s Selecting previously unselected package pandoc. 808s Preparing to unpack .../134-pandoc_3.1.11.1+ds-4_arm64.deb ... 808s Unpacking pandoc (3.1.11.1+ds-4) ... 809s Selecting previously unselected package zip. 809s Preparing to unpack .../135-zip_3.0-15ubuntu3_arm64.deb ... 809s Unpacking zip (3.0-15ubuntu3) ... 809s Selecting previously unselected package unzip. 809s Preparing to unpack .../136-unzip_6.0-29ubuntu1_arm64.deb ... 809s Unpacking unzip (6.0-29ubuntu1) ... 809s Selecting previously unselected package xdg-utils. 809s Preparing to unpack .../137-xdg-utils_1.2.1-2ubuntu2_all.deb ... 809s Unpacking xdg-utils (1.2.1-2ubuntu2) ... 809s Selecting previously unselected package r-base-core. 809s Preparing to unpack .../138-r-base-core_4.5.2-1ubuntu2_arm64.deb ... 809s Unpacking r-base-core (4.5.2-1ubuntu2) ... 809s Selecting previously unselected package liblzma-dev:arm64. 809s Preparing to unpack .../139-liblzma-dev_5.8.2-2_arm64.deb ... 809s Unpacking liblzma-dev:arm64 (5.8.2-2) ... 809s Selecting previously unselected package pkgconf-bin. 809s Preparing to unpack .../140-pkgconf-bin_1.8.1-4build1_arm64.deb ... 809s Unpacking pkgconf-bin (1.8.1-4build1) ... 809s Selecting previously unselected package pkgconf:arm64. 809s Preparing to unpack .../141-pkgconf_1.8.1-4build1_arm64.deb ... 809s Unpacking pkgconf:arm64 (1.8.1-4build1) ... 809s Selecting previously unselected package libtirpc-dev:arm64. 809s Preparing to unpack .../142-libtirpc-dev_1.3.6+ds-1_arm64.deb ... 809s 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unselected package r-bioc-iranges. 809s Preparing to unpack .../148-r-bioc-iranges_2.40.1-3_arm64.deb ... 809s Unpacking r-bioc-iranges (2.40.1-3) ... 809s Selecting previously unselected package r-cran-dbi. 809s Preparing to unpack .../149-r-cran-dbi_1.2.3-1build1_all.deb ... 809s Unpacking r-cran-dbi (1.2.3-1build1) ... 809s Selecting previously unselected package r-cran-bit. 809s Preparing to unpack .../150-r-cran-bit_4.6.0+dfsg-1_arm64.deb ... 809s Unpacking r-cran-bit (4.6.0+dfsg-1) ... 810s Selecting previously unselected package r-cran-bit64. 810s Preparing to unpack .../151-r-cran-bit64_4.6.0-1-4_arm64.deb ... 810s Unpacking r-cran-bit64 (4.6.0-1-4) ... 810s Selecting previously unselected package r-cran-rlang. 810s Preparing to unpack .../152-r-cran-rlang_1.1.5-3_arm64.deb ... 810s Unpacking r-cran-rlang (1.1.5-3) ... 810s Selecting previously unselected package r-cran-cli. 810s Preparing to unpack .../153-r-cran-cli_3.6.4-1_arm64.deb ... 810s Unpacking r-cran-cli (3.6.4-1) ... 810s Selecting previously unselected package r-cran-glue. 810s Preparing to unpack .../154-r-cran-glue_1.8.0-1_arm64.deb ... 810s Unpacking r-cran-glue (1.8.0-1) ... 810s Selecting previously unselected package r-cran-lifecycle. 810s Preparing to unpack .../155-r-cran-lifecycle_1.0.5+dfsg-1_all.deb ... 810s Unpacking r-cran-lifecycle (1.0.5+dfsg-1) ... 810s Selecting previously unselected package r-cran-vctrs. 810s Preparing to unpack .../156-r-cran-vctrs_0.6.5-1_arm64.deb ... 810s Unpacking r-cran-vctrs (0.6.5-1) ... 810s Selecting previously unselected package r-cran-blob. 810s Preparing to unpack .../157-r-cran-blob_1.3.0-1_all.deb ... 810s Unpacking r-cran-blob (1.3.0-1) ... 810s Selecting previously unselected package r-cran-fastmap. 810s Preparing to unpack .../158-r-cran-fastmap_1.2.0-1_arm64.deb ... 810s Unpacking r-cran-fastmap (1.2.0-1) ... 810s Selecting previously unselected package r-cran-cachem. 810s Preparing to unpack .../159-r-cran-cachem_1.1.0-1_arm64.deb ... 810s 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Preparing to unpack .../165-r-cran-curl_7.0.0+dfsg-1_arm64.deb ... 810s Unpacking r-cran-curl (7.0.0+dfsg-1) ... 810s Selecting previously unselected package r-cran-jsonlite. 810s Preparing to unpack .../166-r-cran-jsonlite_1.9.1+dfsg-1_arm64.deb ... 810s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ... 810s Selecting previously unselected package r-cran-mime. 810s Preparing to unpack .../167-r-cran-mime_0.12-2_arm64.deb ... 810s Unpacking r-cran-mime (0.12-2) ... 810s Selecting previously unselected package r-cran-sys. 810s Preparing to unpack .../168-r-cran-sys_3.4.3-1_arm64.deb ... 810s Unpacking r-cran-sys (3.4.3-1) ... 810s Selecting previously unselected package r-cran-askpass. 810s Preparing to unpack .../169-r-cran-askpass_1.2.1-1_arm64.deb ... 810s Unpacking r-cran-askpass (1.2.1-1) ... 810s Selecting previously unselected package r-cran-openssl. 810s Preparing to unpack .../170-r-cran-openssl_2.3.2+dfsg-1_arm64.deb ... 810s Unpacking r-cran-openssl (2.3.2+dfsg-1) ... 810s Selecting previously unselected package r-cran-r6. 811s Preparing to unpack .../171-r-cran-r6_2.6.1-1_all.deb ... 811s Unpacking r-cran-r6 (2.6.1-1) ... 811s Selecting previously unselected package r-cran-httr. 811s Preparing to unpack .../172-r-cran-httr_1.4.7+dfsg-1_all.deb ... 811s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 811s Selecting previously unselected package r-cran-png. 811s Preparing to unpack .../173-r-cran-png_0.1-8-1build2_arm64.deb ... 811s Unpacking r-cran-png (0.1-8-1build2) ... 811s Selecting previously unselected package r-bioc-zlibbioc. 811s Preparing to unpack .../174-r-bioc-zlibbioc_1.52.0+dfsg-2_all.deb ... 811s Unpacking r-bioc-zlibbioc (1.52.0+dfsg-2) ... 811s Selecting previously unselected package r-bioc-xvector. 811s Preparing to unpack .../175-r-bioc-xvector_0.46.0-2_arm64.deb ... 811s Unpacking r-bioc-xvector (0.46.0-2) ... 811s Selecting previously unselected package r-bioc-ucsc.utils. 811s Preparing to unpack .../176-r-bioc-ucsc.utils_1.2.0+ds-2_all.deb 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(1.46.0+dfsg-3) ... 811s Selecting previously unselected package r-bioc-annotationdbi. 811s Preparing to unpack .../182-r-bioc-annotationdbi_1.68.0-2_all.deb ... 811s Unpacking r-bioc-annotationdbi (1.68.0-2) ... 811s Selecting previously unselected package r-cran-xml. 811s Preparing to unpack .../183-r-cran-xml_3.99-0.20-1_arm64.deb ... 811s Unpacking r-cran-xml (3.99-0.20-1) ... 811s Selecting previously unselected package r-cran-xtable. 811s Preparing to unpack .../184-r-cran-xtable_1%3a1.8-4-2build1_all.deb ... 811s Unpacking r-cran-xtable (1:1.8-4-2build1) ... 811s Selecting previously unselected package r-bioc-annotate. 811s Preparing to unpack .../185-r-bioc-annotate_1.84.0+dfsg-2_all.deb ... 811s Unpacking r-bioc-annotate (1.84.0+dfsg-2) ... 811s Selecting previously unselected package r-cran-base64enc. 811s Preparing to unpack .../186-r-cran-base64enc_0.1-3-3build1_arm64.deb ... 811s Unpacking r-cran-base64enc (0.1-3-3build1) ... 811s Selecting previously unselected package r-cran-digest. 812s Preparing to unpack .../187-r-cran-digest_0.6.39-1_arm64.deb ... 812s Unpacking r-cran-digest (0.6.39-1) ... 812s Selecting previously unselected package r-cran-htmltools. 812s Preparing to unpack .../188-r-cran-htmltools_0.5.8.1-1_arm64.deb ... 812s Unpacking r-cran-htmltools (0.5.8.1-1) ... 812s Selecting previously unselected package r-cran-evaluate. 812s Preparing to unpack .../189-r-cran-evaluate_1.0.5-1_all.deb ... 812s Unpacking r-cran-evaluate (1.0.5-1) ... 812s Selecting previously unselected package r-cran-xfun. 812s Preparing to unpack .../190-r-cran-xfun_0.55+dfsg-1_arm64.deb ... 812s Unpacking r-cran-xfun (0.55+dfsg-1) ... 812s Selecting previously unselected package r-cran-highr. 812s Preparing to unpack .../191-r-cran-highr_0.11+dfsg-1_all.deb ... 812s Unpacking r-cran-highr (0.11+dfsg-1) ... 812s Selecting previously unselected package r-cran-yaml. 812s Preparing to unpack .../192-r-cran-yaml_2.3.10-1_arm64.deb ... 812s Unpacking r-cran-yaml 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r-cran-littler (0.3.22-1) ... 813s Selecting previously unselected package r-cran-pkgkitten. 813s Preparing to unpack .../204-r-cran-pkgkitten_0.2.4-1_all.deb ... 813s Unpacking r-cran-pkgkitten (0.2.4-1) ... 813s Selecting previously unselected package r-cran-rcpp. 813s Preparing to unpack .../205-r-cran-rcpp_1.1.0-1_arm64.deb ... 813s Unpacking r-cran-rcpp (1.1.0-1) ... 813s Selecting previously unselected package r-cran-later. 813s Preparing to unpack .../206-r-cran-later_1.4.1+dfsg-1_arm64.deb ... 813s Unpacking r-cran-later (1.4.1+dfsg-1) ... 813s Selecting previously unselected package r-cran-magrittr. 813s Preparing to unpack .../207-r-cran-magrittr_2.0.3-1_arm64.deb ... 813s Unpacking r-cran-magrittr (2.0.3-1) ... 813s Selecting previously unselected package r-cran-promises. 813s Preparing to unpack .../208-r-cran-promises_1.3.2+dfsg-1_arm64.deb ... 813s Unpacking r-cran-promises (1.3.2+dfsg-1) ... 813s Selecting previously unselected package r-cran-httpuv. 813s Preparing to unpack .../209-r-cran-httpuv_1.6.15+dfsg-1_arm64.deb ... 813s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 813s Selecting previously unselected package r-cran-sourcetools. 813s Preparing to unpack .../210-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 813s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 813s Selecting previously unselected package r-cran-withr. 813s Preparing to unpack .../211-r-cran-withr_3.0.2+dfsg-1_all.deb ... 813s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 813s Selecting previously unselected package r-cran-commonmark. 813s Preparing to unpack .../212-r-cran-commonmark_1.9.5-1_arm64.deb ... 813s Unpacking r-cran-commonmark (1.9.5-1) ... 813s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 813s Preparing to unpack .../213-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 813s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 813s Selecting previously unselected package r-cran-shiny. 813s Preparing to unpack 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r-cran-rcolorbrewer (1.1-3-1build2) ... 824s Setting up r-bioc-s4vectors (0.44.0+dfsg-2) ... 824s Setting up r-cran-later (1.4.1+dfsg-1) ... 824s Setting up r-cran-htmltools (0.5.8.1-1) ... 824s Setting up r-cran-tinytex (0.58-1) ... 824s Setting up r-cran-knitr (1.51+dfsg-1) ... 824s Setting up g++ (4:15.2.0-4ubuntu1) ... 824s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 824s Setting up r-cran-cachem (1.1.0-1) ... 824s Setting up r-cran-sass (0.4.9+dfsg-1) ... 824s Setting up build-essential (12.12ubuntu2) ... 824s Setting up r-bioc-iranges (2.40.1-3) ... 824s Setting up r-cran-vctrs (0.6.5-1) ... 824s Setting up r-cran-openssl (2.3.2+dfsg-1) ... 824s Setting up r-base-dev (4.5.2-1ubuntu2) ... 824s Setting up r-cran-fontawesome (0.5.3-1) ... 824s Setting up r-cran-jquerylib (0.1.4+dfsg-5) ... 824s Setting up texlive-bibtex-extra (2025.20260124-1) ... 824s Setting up r-cran-httr (1.4.7+dfsg-1) ... 824s Setting up r-cran-memoise (2.0.1-1build1) ... 824s Setting up r-cran-promises (1.3.2+dfsg-1) ... 824s Setting up r-cran-blob (1.3.0-1) ... 824s Setting up pkg-r-autopkgtest (20250812) ... 824s Setting up r-bioc-xvector (0.46.0-2) ... 824s Setting up r-cran-rsqlite (2.3.9-1) ... 824s Setting up r-bioc-ucsc.utils (1.2.0+ds-2) ... 824s Setting up r-cran-httpuv (1.6.15+dfsg-1) ... 824s Setting up r-bioc-genomeinfodb (1.42.3+dfsg-1) ... 824s Setting up r-cran-bslib (0.9.0+dfsg-3build1) ... 824s Setting up r-bioc-biostrings (2.74.1+dfsg-2) ... 824s Setting up r-cran-shiny (1.10.0+dfsg-2) ... 824s Setting up r-cran-rmarkdown (2.30+dfsg-1) ... 824s Setting up r-cran-bookdown (0.42+dfsg-1) ... 824s Setting up r-bioc-keggrest (1.46.0+dfsg-3) ... 824s Setting up r-bioc-annotationdbi (1.68.0-2) ... 824s Setting up r-bioc-annotate (1.84.0+dfsg-2) ... 824s Setting up r-bioc-biocstyle (2.34.0+dfsg-1) ... 824s Setting up r-bioc-geneplotter (1.84.0+dfsg-2) ... 824s Processing triggers for man-db (2.13.1-1build1) ... 825s Processing triggers for install-info (7.2-5) ... 825s Processing triggers for libc-bin (2.42-2ubuntu4) ... 825s Processing triggers for tex-common (6.20) ... 825s Running updmap-sys. This may take some time... done. 825s Running mktexlsr /var/lib/texmf ... done. 825s Building format(s) --all. 852s This may take some time... done. 853s autopkgtest [22:59:24]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 853s autopkgtest [22:59:24]: test pkg-r-autopkgtest: [----------------------- 853s Test: Try to load the R library geneplotter 853s 853s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 853s Copyright (C) 2025 The R Foundation for Statistical Computing 853s Platform: aarch64-unknown-linux-gnu 853s 853s R is free software and comes with ABSOLUTELY NO WARRANTY. 853s You are welcome to redistribute it under certain conditions. 853s Type 'license()' or 'licence()' for distribution details. 853s 853s R is a collaborative project with many contributors. 853s Type 'contributors()' for more information and 853s 'citation()' on how to cite R or R packages in publications. 853s 853s Type 'demo()' for some demos, 'help()' for on-line help, or 853s 'help.start()' for an HTML browser interface to help. 853s Type 'q()' to quit R. 853s 853s > library('geneplotter') 853s Loading required package: Biobase 853s Loading required package: BiocGenerics 853s 853s Attaching package: ‘BiocGenerics’ 853s 853s The following objects are masked from ‘package:stats’: 853s 853s IQR, mad, sd, var, xtabs 853s 853s The following objects are masked from ‘package:base’: 853s 853s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 853s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 853s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 853s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 853s Position, rank, rbind, Reduce, rownames, sapply, saveRDS, setdiff, 853s table, tapply, union, unique, unsplit, which.max, which.min 853s 853s Welcome to Bioconductor 853s 853s Vignettes contain introductory material; view with 853s 'browseVignettes()'. To cite Bioconductor, see 853s 'citation("Biobase")', and for packages 'citation("pkgname")'. 853s 853s Loading required package: lattice 854s Loading required package: annotate 854s Loading required package: AnnotationDbi 854s Loading required package: stats4 854s Loading required package: IRanges 854s Loading required package: S4Vectors 854s 854s Attaching package: ‘S4Vectors’ 854s 854s The following object is masked from ‘package:utils’: 854s 854s findMatches 854s 854s The following objects are masked from ‘package:base’: 854s 854s expand.grid, I, unname 854s 856s Loading required package: XML 857s > 857s find: ‘tests’: No such file or directory 857s autopkgtest [22:59:28]: test pkg-r-autopkgtest: -----------------------] 857s pkg-r-autopkgtest PASS 857s autopkgtest [22:59:28]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 858s autopkgtest [22:59:29]: @@@@@@@@@@@@@@@@@@@@ summary 858s pkg-r-autopkgtest PASS