0s autopkgtest [22:44:25]: starting date and time: 2026-02-09 22:44:25+0000 0s autopkgtest [22:44:25]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [22:44:25]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.5pq51cuj/out --timeout-copy=6000 --needs-internet=try --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:lattice --apt-upgrade r-bioc-deseq --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=lattice/0.22-9-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-arm64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@sto01-arm64-18.secgroup --name adt-resolute-arm64-r-bioc-deseq-20260209-224425-juju-7f2275-prod-proposed-migration-environment-2-8f3a7e4a-870e-4e3e-8ee5-38034017aee2 --image adt/ubuntu-resolute-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-autopkgtest-workers-arm64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 3s Creating nova instance adt-resolute-arm64-r-bioc-deseq-20260209-224425-juju-7f2275-prod-proposed-migration-environment-2-8f3a7e4a-870e-4e3e-8ee5-38034017aee2 from image adt/ubuntu-resolute-arm64-server-20260209.img (UUID 793037ca-75af-461b-82de-f8081300b2e3)... 132s autopkgtest [22:46:37]: testbed dpkg architecture: arm64 132s autopkgtest [22:46:37]: testbed apt version: 3.1.15 132s autopkgtest [22:46:37]: @@@@@@@@@@@@@@@@@@@@ test bed setup 132s autopkgtest [22:46:37]: testbed release detected to be: None 133s autopkgtest [22:46:38]: updating testbed package index (apt update) 134s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 134s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 134s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 134s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 134s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [29.4 kB] 134s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1645 kB] 137s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [176 kB] 137s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 Packages [246 kB] 137s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 c-n-f Metadata [6216 B] 137s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 c-n-f Metadata [304 B] 137s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 Packages [1580 kB] 140s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 c-n-f Metadata [32.0 kB] 140s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 Packages [21.7 kB] 140s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 c-n-f Metadata [688 B] 141s Fetched 3862 kB in 6s (609 kB/s) 142s Reading package lists... 143s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 143s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 143s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 143s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 144s Reading package lists... 144s Reading package lists... 144s Building dependency tree... 144s Reading state information... 144s Calculating upgrade... 144s The following packages will be upgraded: 144s cryptsetup-bin dracut-install iproute2 iptables libcryptsetup12 libip4tc2 144s libip6tc2 libxtables12 wget 144s 9 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 144s Need to get 2534 kB of archives. 144s After this operation, 18.4 kB of additional disk space will be used. 144s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 iptables arm64 1.8.11-2ubuntu3 [386 kB] 144s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 libip4tc2 arm64 1.8.11-2ubuntu3 [24.3 kB] 144s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 libip6tc2 arm64 1.8.11-2ubuntu3 [24.7 kB] 144s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 libxtables12 arm64 1.8.11-2ubuntu3 [36.7 kB] 145s Get:5 http://ftpmaster.internal/ubuntu resolute/main arm64 iproute2 arm64 6.18.0-1ubuntu1 [1171 kB] 147s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 libcryptsetup12 arm64 2:2.8.0-1ubuntu3 [274 kB] 147s Get:7 http://ftpmaster.internal/ubuntu resolute/main arm64 wget arm64 1.25.0-2ubuntu4 [344 kB] 147s Get:8 http://ftpmaster.internal/ubuntu resolute/main arm64 cryptsetup-bin arm64 2:2.8.0-1ubuntu3 [227 kB] 147s Get:9 http://ftpmaster.internal/ubuntu resolute/main arm64 dracut-install arm64 109-11ubuntu1 [45.3 kB] 148s dpkg-preconfigure: unable to re-open stdin: No such file or directory 148s Fetched 2534 kB in 3s (857 kB/s) 148s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 136597 files and directories currently installed.) 148s Preparing to unpack .../0-iptables_1.8.11-2ubuntu3_arm64.deb ... 148s Unpacking iptables (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 148s Preparing to unpack .../1-libip4tc2_1.8.11-2ubuntu3_arm64.deb ... 148s Unpacking libip4tc2:arm64 (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 148s Preparing to unpack .../2-libip6tc2_1.8.11-2ubuntu3_arm64.deb ... 148s Unpacking libip6tc2:arm64 (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 148s Preparing to unpack .../3-libxtables12_1.8.11-2ubuntu3_arm64.deb ... 148s Unpacking libxtables12:arm64 (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 148s Preparing to unpack .../4-iproute2_6.18.0-1ubuntu1_arm64.deb ... 149s Unpacking iproute2 (6.18.0-1ubuntu1) over (6.16.0-1ubuntu3) ... 149s Preparing to unpack .../5-libcryptsetup12_2%3a2.8.0-1ubuntu3_arm64.deb ... 149s Unpacking libcryptsetup12:arm64 (2:2.8.0-1ubuntu3) over (2:2.8.0-1ubuntu2) ... 149s Preparing to unpack .../6-wget_1.25.0-2ubuntu4_arm64.deb ... 149s Unpacking wget (1.25.0-2ubuntu4) over (1.25.0-2ubuntu3) ... 149s Preparing to unpack .../7-cryptsetup-bin_2%3a2.8.0-1ubuntu3_arm64.deb ... 149s Unpacking cryptsetup-bin (2:2.8.0-1ubuntu3) over (2:2.8.0-1ubuntu2) ... 149s Preparing to unpack .../8-dracut-install_109-11ubuntu1_arm64.deb ... 149s Unpacking dracut-install (109-11ubuntu1) over (109-9ubuntu1) ... 149s Setting up libip4tc2:arm64 (1.8.11-2ubuntu3) ... 149s Setting up wget (1.25.0-2ubuntu4) ... 149s Setting up libip6tc2:arm64 (1.8.11-2ubuntu3) ... 149s Setting up libxtables12:arm64 (1.8.11-2ubuntu3) ... 149s Setting up dracut-install (109-11ubuntu1) ... 149s Setting up libcryptsetup12:arm64 (2:2.8.0-1ubuntu3) ... 149s Setting up cryptsetup-bin (2:2.8.0-1ubuntu3) ... 149s Setting up iptables (1.8.11-2ubuntu3) ... 149s Setting up iproute2 (6.18.0-1ubuntu1) ... 149s Processing triggers for man-db (2.13.1-1build1) ... 150s Processing triggers for install-info (7.2-5) ... 150s Processing triggers for libc-bin (2.42-2ubuntu4) ... 151s autopkgtest [22:46:56]: upgrading testbed (apt dist-upgrade and autopurge) 151s Reading package lists... 151s Building dependency tree... 151s Reading state information... 151s Calculating upgrade... 152s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 152s Reading package lists... 152s Building dependency tree... 152s Reading state information... 152s Solving dependencies... 153s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 155s autopkgtest [22:47:00]: testbed running kernel: Linux 6.19.0-3-generic #3-Ubuntu SMP PREEMPT_DYNAMIC Fri Jan 23 19:46:27 UTC 2026 155s autopkgtest [22:47:00]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-deseq 161s Get:1 http://ftpmaster.internal/ubuntu resolute/universe r-bioc-deseq 1.39.0-17 (dsc) [2207 B] 161s Get:2 http://ftpmaster.internal/ubuntu resolute/universe r-bioc-deseq 1.39.0-17 (tar) [1692 kB] 161s Get:3 http://ftpmaster.internal/ubuntu resolute/universe r-bioc-deseq 1.39.0-17 (diff) [3244 B] 161s gpgv: Signature made Mon Jan 13 20:08:14 2025 UTC 161s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 161s gpgv: issuer "crusoe@debian.org" 161s gpgv: Can't check signature: No public key 161s dpkg-source: warning: cannot verify inline signature for ./r-bioc-deseq_1.39.0-17.dsc: no acceptable signature found 161s autopkgtest [22:47:06]: testing package r-bioc-deseq version 1.39.0-17 162s autopkgtest [22:47:07]: build not needed 167s autopkgtest [22:47:12]: test pkg-r-autopkgtest: preparing testbed 167s Reading package lists... 167s Building dependency tree... 167s Reading state information... 167s Solving dependencies... 168s The following NEW packages will be installed: 168s build-essential cpp cpp-15 cpp-15-aarch64-linux-gnu cpp-aarch64-linux-gnu 168s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 168s g++ g++-15 g++-15-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-15 168s gcc-15-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-15 168s gfortran-15-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 168s libasan8 libblas-dev libblas3 libbz2-dev libc-dev-bin libc6-dev libcairo2 168s libcc1-0 libcrypt-dev libdatrie1 libdeflate-dev libdeflate0 libfontconfig1 168s libgcc-15-dev libgfortran-15-dev libgfortran5 libgomp1 libgraphite2-3 168s libharfbuzz0b libhwasan0 libice6 libicu-dev libisl23 libitm1 libjbig0 168s libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev 168s liblapack-dev liblapack3 liblerc4 liblsan0 liblzma-dev libmpc3 168s libncurses-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 168s libpaper-utils libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev 168s libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libreadline-dev 168s libsharpyuv0 libsm6 libstdc++-15-dev libtcl8.6 libthai-data libthai0 168s libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 libxcb-render0 168s libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64 libzstd-dev linux-libc-dev 168s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev r-bioc-annotate 168s r-bioc-annotationdbi r-bioc-biobase r-bioc-biocgenerics r-bioc-biostrings 168s r-bioc-deseq r-bioc-genefilter r-bioc-geneplotter r-bioc-genomeinfodb 168s r-bioc-genomeinfodbdata r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics 168s r-bioc-s4vectors r-bioc-ucsc.utils r-bioc-xvector r-bioc-zlibbioc 168s r-cran-askpass r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob 168s r-cran-cachem r-cran-catools r-cran-cli r-cran-cpp11 r-cran-crayon 168s r-cran-curl r-cran-dbi r-cran-fastmap r-cran-gdata r-cran-glue r-cran-gplots 168s r-cran-gtools r-cran-httr r-cran-jsonlite r-cran-kernsmooth r-cran-lattice 168s r-cran-lifecycle r-cran-locfit r-cran-mass r-cran-matrix r-cran-matrixstats 168s r-cran-memoise r-cran-mime r-cran-openssl r-cran-pkgconfig r-cran-plogr 168s r-cran-png r-cran-r6 r-cran-rcolorbrewer r-cran-rlang r-cran-rsqlite 168s r-cran-survival r-cran-sys r-cran-vctrs r-cran-xml r-cran-xtable 168s rpcsvc-proto unzip x11-common xdg-utils zip zlib1g-dev 168s 0 upgraded, 162 newly installed, 0 to remove and 0 not upgraded. 168s Need to get 225 MB of archives. 168s After this operation, 579 MB of additional disk space will be used. 168s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 libc-dev-bin arm64 2.42-2ubuntu4 [22.5 kB] 168s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 linux-libc-dev arm64 6.19.0-3.3 [1819 kB] 171s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 libcrypt-dev arm64 1:4.5.1-1 [123 kB] 171s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 rpcsvc-proto arm64 1.4.3-1build1 [65.6 kB] 171s Get:5 http://ftpmaster.internal/ubuntu resolute/main arm64 libc6-dev arm64 2.42-2ubuntu4 [1765 kB] 174s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 libisl23 arm64 0.27-1build1 [676 kB] 175s Get:7 http://ftpmaster.internal/ubuntu resolute/main arm64 libmpc3 arm64 1.3.1-2 [55.6 kB] 175s Get:8 http://ftpmaster.internal/ubuntu resolute/main arm64 cpp-15-aarch64-linux-gnu arm64 15.2.0-12ubuntu1 [11.7 MB] 195s Get:9 http://ftpmaster.internal/ubuntu resolute/main arm64 cpp-15 arm64 15.2.0-12ubuntu1 [1030 B] 195s Get:10 http://ftpmaster.internal/ubuntu resolute/main arm64 cpp-aarch64-linux-gnu arm64 4:15.2.0-4ubuntu1 [5736 B] 195s Get:11 http://ftpmaster.internal/ubuntu resolute/main arm64 cpp arm64 4:15.2.0-4ubuntu1 [22.4 kB] 195s Get:12 http://ftpmaster.internal/ubuntu resolute/main arm64 libcc1-0 arm64 15.2.0-12ubuntu1 [49.0 kB] 195s Get:13 http://ftpmaster.internal/ubuntu resolute/main arm64 libgomp1 arm64 15.2.0-12ubuntu1 [147 kB] 195s Get:14 http://ftpmaster.internal/ubuntu resolute/main arm64 libitm1 arm64 15.2.0-12ubuntu1 [27.8 kB] 195s Get:15 http://ftpmaster.internal/ubuntu resolute/main arm64 libasan8 arm64 15.2.0-12ubuntu1 [2920 kB] 202s Get:16 http://ftpmaster.internal/ubuntu resolute/main arm64 liblsan0 arm64 15.2.0-12ubuntu1 [1316 kB] 204s Get:17 http://ftpmaster.internal/ubuntu resolute/main arm64 libtsan2 arm64 15.2.0-12ubuntu1 [2688 kB] 209s Get:18 http://ftpmaster.internal/ubuntu resolute/main arm64 libubsan1 arm64 15.2.0-12ubuntu1 [1175 kB] 210s Get:19 http://ftpmaster.internal/ubuntu resolute/main arm64 libhwasan0 arm64 15.2.0-12ubuntu1 [1638 kB] 213s Get:20 http://ftpmaster.internal/ubuntu resolute/main arm64 libgcc-15-dev arm64 15.2.0-12ubuntu1 [2600 kB] 217s Get:21 http://ftpmaster.internal/ubuntu resolute/main arm64 gcc-15-aarch64-linux-gnu arm64 15.2.0-12ubuntu1 [23.1 MB] 255s Get:22 http://ftpmaster.internal/ubuntu resolute/main arm64 gcc-15 arm64 15.2.0-12ubuntu1 [519 kB] 255s Get:23 http://ftpmaster.internal/ubuntu resolute/main arm64 gcc-aarch64-linux-gnu arm64 4:15.2.0-4ubuntu1 [1206 B] 255s Get:24 http://ftpmaster.internal/ubuntu resolute/main arm64 gcc arm64 4:15.2.0-4ubuntu1 [5016 B] 255s Get:25 http://ftpmaster.internal/ubuntu resolute/main arm64 libstdc++-15-dev arm64 15.2.0-12ubuntu1 [2549 kB] 260s Get:26 http://ftpmaster.internal/ubuntu resolute/main arm64 g++-15-aarch64-linux-gnu arm64 15.2.0-12ubuntu1 [13.2 MB] 285s Get:27 http://ftpmaster.internal/ubuntu resolute/main arm64 g++-15 arm64 15.2.0-12ubuntu1 [25.3 kB] 285s Get:28 http://ftpmaster.internal/ubuntu resolute/main arm64 g++-aarch64-linux-gnu arm64 4:15.2.0-4ubuntu1 [956 B] 285s Get:29 http://ftpmaster.internal/ubuntu resolute/main arm64 g++ arm64 4:15.2.0-4ubuntu1 [1080 B] 285s Get:30 http://ftpmaster.internal/ubuntu resolute/main arm64 build-essential arm64 12.12ubuntu2 [5254 B] 285s Get:31 http://ftpmaster.internal/ubuntu resolute/main arm64 dctrl-tools arm64 2.24-3build4 [102 kB] 285s Get:32 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-mono all 2.37-8build1 [502 kB] 285s Get:33 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-core all 2.37-8build1 [834 kB] 287s Get:34 http://ftpmaster.internal/ubuntu resolute/main arm64 fontconfig-config arm64 2.17.1-3ubuntu1 [38.5 kB] 287s Get:35 http://ftpmaster.internal/ubuntu resolute/main arm64 libfontconfig1 arm64 2.17.1-3ubuntu1 [144 kB] 287s Get:36 http://ftpmaster.internal/ubuntu resolute/main arm64 fontconfig arm64 2.17.1-3ubuntu1 [181 kB] 287s Get:37 http://ftpmaster.internal/ubuntu resolute/main arm64 libgfortran5 arm64 15.2.0-12ubuntu1 [451 kB] 287s Get:38 http://ftpmaster.internal/ubuntu resolute/main arm64 libgfortran-15-dev arm64 15.2.0-12ubuntu1 [490 kB] 287s Get:39 http://ftpmaster.internal/ubuntu resolute/main arm64 gfortran-15-aarch64-linux-gnu arm64 15.2.0-12ubuntu1 [12.5 MB] 310s Get:40 http://ftpmaster.internal/ubuntu resolute/main arm64 gfortran-15 arm64 15.2.0-12ubuntu1 [18.1 kB] 310s Get:41 http://ftpmaster.internal/ubuntu resolute/main arm64 gfortran-aarch64-linux-gnu arm64 4:15.2.0-4ubuntu1 [1022 B] 310s Get:42 http://ftpmaster.internal/ubuntu resolute/main arm64 gfortran arm64 4:15.2.0-4ubuntu1 [1160 B] 310s Get:43 http://ftpmaster.internal/ubuntu resolute/main arm64 icu-devtools arm64 78.2-1ubuntu1 [207 kB] 310s Get:44 http://ftpmaster.internal/ubuntu resolute/main arm64 libblas3 arm64 3.12.1-7ubuntu1 [181 kB] 310s Get:45 http://ftpmaster.internal/ubuntu resolute/main arm64 libblas-dev arm64 3.12.1-7ubuntu1 [160 kB] 310s Get:46 http://ftpmaster.internal/ubuntu resolute/main arm64 libbz2-dev arm64 1.0.8-6build2 [34.9 kB] 310s Get:47 http://ftpmaster.internal/ubuntu resolute/main arm64 libpixman-1-0 arm64 0.46.4-1 [204 kB] 310s Get:48 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-render0 arm64 1.17.0-2ubuntu1 [16.4 kB] 310s Get:49 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-shm0 arm64 1.17.0-2ubuntu1 [5938 B] 310s Get:50 http://ftpmaster.internal/ubuntu resolute/main arm64 libxrender1 arm64 1:0.9.12-1 [19.5 kB] 310s Get:51 http://ftpmaster.internal/ubuntu resolute/main arm64 libcairo2 arm64 1.18.4-3 [556 kB] 312s Get:52 http://ftpmaster.internal/ubuntu resolute/main arm64 libdatrie1 arm64 0.2.14-1 [19.6 kB] 312s Get:53 http://ftpmaster.internal/ubuntu resolute/main arm64 libdeflate0 arm64 1.23-2build1 [46.8 kB] 312s Get:54 http://ftpmaster.internal/ubuntu resolute/main arm64 libdeflate-dev arm64 1.23-2build1 [54.3 kB] 312s Get:55 http://ftpmaster.internal/ubuntu resolute/main arm64 libgraphite2-3 arm64 1.3.14-11ubuntu1 [72.1 kB] 312s Get:56 http://ftpmaster.internal/ubuntu resolute/main arm64 libharfbuzz0b arm64 12.3.2-1 [510 kB] 312s Get:57 http://ftpmaster.internal/ubuntu resolute/main arm64 x11-common all 1:7.7+24ubuntu1 [22.4 kB] 312s Get:58 http://ftpmaster.internal/ubuntu resolute/main arm64 libice6 arm64 2:1.1.1-1build1 [43.0 kB] 312s Get:59 http://ftpmaster.internal/ubuntu resolute/main arm64 libicu-dev arm64 78.2-1ubuntu1 [12.5 MB] 332s Get:60 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg-turbo8 arm64 2.1.5-4ubuntu3 [161 kB] 332s Get:61 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg-turbo8-dev arm64 2.1.5-4ubuntu3 [301 kB] 332s Get:62 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 332s Get:63 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 332s Get:64 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 332s Get:65 http://ftpmaster.internal/ubuntu resolute/main arm64 liblapack3 arm64 3.12.1-7ubuntu1 [2299 kB] 336s Get:66 http://ftpmaster.internal/ubuntu resolute/main arm64 liblapack-dev arm64 3.12.1-7ubuntu1 [4456 kB] 345s Get:67 http://ftpmaster.internal/ubuntu resolute/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu2 [174 kB] 345s Get:68 http://ftpmaster.internal/ubuntu resolute/main arm64 libncurses-dev arm64 6.6+20251231-1 [391 kB] 345s Get:69 http://ftpmaster.internal/ubuntu resolute/main arm64 libthai-data all 0.1.30-1 [155 kB] 345s Get:70 http://ftpmaster.internal/ubuntu resolute/main arm64 libthai0 arm64 0.1.30-1 [18.3 kB] 345s Get:71 http://ftpmaster.internal/ubuntu resolute/main arm64 libpango-1.0-0 arm64 1.57.0-1 [238 kB] 345s Get:72 http://ftpmaster.internal/ubuntu resolute/main arm64 libpangoft2-1.0-0 arm64 1.57.0-1 [51.5 kB] 345s Get:73 http://ftpmaster.internal/ubuntu resolute/main arm64 libpangocairo-1.0-0 arm64 1.57.0-1 [27.9 kB] 345s Get:74 http://ftpmaster.internal/ubuntu resolute/main arm64 libpaper2 arm64 2.2.5-0.3build1 [17.3 kB] 345s Get:75 http://ftpmaster.internal/ubuntu resolute/main arm64 libpaper-utils arm64 2.2.5-0.3build1 [15.4 kB] 345s Get:76 http://ftpmaster.internal/ubuntu resolute/main arm64 libpcre2-16-0 arm64 10.46-1 [225 kB] 345s Get:77 http://ftpmaster.internal/ubuntu resolute/main arm64 libpcre2-32-0 arm64 10.46-1 [213 kB] 345s Get:78 http://ftpmaster.internal/ubuntu resolute/main arm64 libpcre2-posix3 arm64 10.46-1 [7300 B] 345s Get:79 http://ftpmaster.internal/ubuntu resolute/main arm64 libpcre2-dev arm64 10.46-1 [772 kB] 347s Get:80 http://ftpmaster.internal/ubuntu resolute/main arm64 libpkgconf3 arm64 1.8.1-4build1 [33.7 kB] 347s Get:81 http://ftpmaster.internal/ubuntu resolute/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu2 [899 kB] 349s Get:82 http://ftpmaster.internal/ubuntu resolute/main arm64 libpng-dev arm64 1.6.54-1 [268 kB] 349s Get:83 http://ftpmaster.internal/ubuntu resolute/main arm64 libreadline-dev arm64 8.3-3 [199 kB] 349s Get:84 http://ftpmaster.internal/ubuntu resolute/main arm64 libsharpyuv0 arm64 1.5.0-0.1build1 [16.7 kB] 349s Get:85 http://ftpmaster.internal/ubuntu resolute/main arm64 libsm6 arm64 2:1.2.6-1build1 [16.8 kB] 349s Get:86 http://ftpmaster.internal/ubuntu resolute/main arm64 libtcl8.6 arm64 8.6.17+dfsg-1build1 [983 kB] 351s Get:87 http://ftpmaster.internal/ubuntu resolute/main arm64 libjbig0 arm64 2.1-6.1ubuntu3 [29.2 kB] 351s Get:88 http://ftpmaster.internal/ubuntu resolute/main arm64 libwebp7 arm64 1.5.0-0.1build1 [205 kB] 351s Get:89 http://ftpmaster.internal/ubuntu resolute/main arm64 libtiff6 arm64 4.7.0-3ubuntu3 [196 kB] 351s Get:90 http://ftpmaster.internal/ubuntu resolute/main arm64 libxft2 arm64 2.3.6-1build2 [43.2 kB] 351s Get:91 http://ftpmaster.internal/ubuntu resolute/main arm64 libxss1 arm64 1:1.2.3-1build4 [7102 B] 351s Get:92 http://ftpmaster.internal/ubuntu resolute/main arm64 libtk8.6 arm64 8.6.17-1 [811 kB] 352s Get:93 http://ftpmaster.internal/ubuntu resolute/main arm64 libxt6t64 arm64 1:1.2.1-1.3 [168 kB] 352s Get:94 http://ftpmaster.internal/ubuntu resolute/main arm64 libzstd-dev arm64 1.5.7+dfsg-3 [349 kB] 352s Get:95 http://ftpmaster.internal/ubuntu resolute/main arm64 zip arm64 3.0-15ubuntu3 [170 kB] 352s Get:96 http://ftpmaster.internal/ubuntu resolute/main arm64 unzip arm64 6.0-29ubuntu1 [176 kB] 352s Get:97 http://ftpmaster.internal/ubuntu resolute/main arm64 xdg-utils all 1.2.1-2ubuntu2 [66.1 kB] 352s Get:98 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-base-core arm64 4.5.2-1ubuntu2 [28.6 MB] 401s Get:99 http://ftpmaster.internal/ubuntu resolute/main arm64 liblzma-dev arm64 5.8.2-2 [180 kB] 401s Get:100 http://ftpmaster.internal/ubuntu resolute/main arm64 pkgconf-bin arm64 1.8.1-4build1 [21.7 kB] 401s Get:101 http://ftpmaster.internal/ubuntu resolute/main arm64 pkgconf arm64 1.8.1-4build1 [16.8 kB] 401s Get:102 http://ftpmaster.internal/ubuntu resolute/main arm64 libtirpc-dev arm64 1.3.6+ds-1 [202 kB] 401s Get:103 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-base-dev all 4.5.2-1ubuntu2 [1880 B] 401s Get:104 http://ftpmaster.internal/ubuntu resolute/universe arm64 pkg-r-autopkgtest all 20250812 [6158 B] 401s Get:105 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-biocgenerics all 0.52.0-2 [624 kB] 402s Get:106 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-biobase arm64 2.66.0-2 [2331 kB] 406s Get:107 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-s4vectors arm64 0.44.0+dfsg-2 [2054 kB] 410s Get:108 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-iranges arm64 2.40.1-3 [2301 kB] 414s Get:109 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-dbi all 1.2.3-1build1 [855 kB] 415s Get:110 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-bit arm64 4.6.0+dfsg-1 [450 kB] 415s Get:111 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-bit64 arm64 4.6.0-1-4 [495 kB] 415s Get:112 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rlang arm64 1.1.5-3 [1706 kB] 418s Get:113 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-cli arm64 3.6.4-1 [1374 kB] 422s Get:114 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-glue arm64 1.8.0-1 [163 kB] 422s Get:115 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-lifecycle all 1.0.5+dfsg-1 [120 kB] 422s Get:116 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 424s Get:117 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-blob all 1.3.0-1 [54.1 kB] 424s Get:118 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-fastmap arm64 1.2.0-1 [70.6 kB] 424s Get:119 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-cachem arm64 1.1.0-1 [74.1 kB] 424s Get:120 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-memoise all 2.0.1-1build1 [54.5 kB] 424s Get:121 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-pkgconfig all 2.0.3-2build2 [20.4 kB] 424s Get:122 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-plogr all 0.2.0-3build2 [15.8 kB] 424s Get:123 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-cpp11 all 0.5.3-1 [242 kB] 424s Get:124 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rsqlite arm64 2.3.9-1 [1247 kB] 427s Get:125 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-curl arm64 7.0.0+dfsg-1 [202 kB] 427s Get:126 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-jsonlite arm64 1.9.1+dfsg-1 [445 kB] 427s Get:127 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-mime arm64 0.12-2 [35.8 kB] 427s Get:128 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-sys arm64 3.4.3-1 [45.2 kB] 427s Get:129 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-askpass arm64 1.2.1-1 [24.8 kB] 427s Get:130 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-openssl arm64 2.3.2+dfsg-1 [406 kB] 427s Get:131 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-r6 all 2.6.1-1 [101 kB] 427s Get:132 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 427s Get:133 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-png arm64 0.1-8-1build2 [40.1 kB] 427s Get:134 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB] 427s Get:135 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-xvector arm64 0.46.0-2 [618 kB] 428s Get:136 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-ucsc.utils all 1.2.0+ds-2 [77.2 kB] 428s Get:137 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB] 450s Get:138 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-genomeinfodb all 1.42.3+dfsg-1 [3887 kB] 460s Get:139 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-crayon all 1.5.3-1 [165 kB] 460s Get:140 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-biostrings arm64 2.74.1+dfsg-2 [13.3 MB] 484s Get:141 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-keggrest all 1.46.0+dfsg-3 [183 kB] 484s Get:142 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-annotationdbi all 1.68.0-2 [4857 kB] 491s Get:143 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-xml arm64 3.99-0.20-1 [1749 kB] 494s Get:144 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-xtable all 1:1.8-4-2build1 [691 kB] 495s Get:145 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-annotate all 1.84.0+dfsg-2 [1870 kB] 499s Get:146 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 r-cran-lattice arm64 0.22-9-1 [1399 kB] 501s Get:147 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-locfit arm64 1.5-9.12-1 [514 kB] 501s Get:148 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-matrixstats arm64 1.5.0-1 [496 kB] 501s Get:149 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-matrixgenerics all 1.18.1-1 [450 kB] 501s Get:150 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-matrix arm64 1.7-4-1 [4146 kB] 510s Get:151 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-survival arm64 3.8-6-1 [8270 kB] 524s Get:152 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-genefilter arm64 1.88.0-2 [1241 kB] 526s Get:153 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build2 [54.0 kB] 526s Get:154 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-geneplotter all 1.84.0+dfsg-2 [1508 kB] 529s Get:155 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-mass arm64 7.3-65-1 [1109 kB] 531s Get:156 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-deseq arm64 1.39.0-17 [2001 kB] 533s Get:157 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-bitops arm64 1.0-9-1 [30.2 kB] 533s Get:158 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-catools arm64 1.18.3-1 [203 kB] 533s Get:159 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-gtools arm64 3.9.5-1build1 [345 kB] 533s Get:160 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-gdata all 3.0.1-1build1 [491 kB] 533s Get:161 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-kernsmooth arm64 2.23-26-1build1 [93.6 kB] 534s Get:162 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-gplots all 3.3.0-1 [3825 kB] 540s Preconfiguring packages ... 540s Fetched 225 MB in 6min 12s (606 kB/s) 540s Selecting previously unselected package libc-dev-bin. 540s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 136600 files and directories currently installed.) 540s Preparing to unpack .../000-libc-dev-bin_2.42-2ubuntu4_arm64.deb ... 540s Unpacking libc-dev-bin (2.42-2ubuntu4) ... 540s Selecting previously unselected package linux-libc-dev:arm64. 540s Preparing to unpack .../001-linux-libc-dev_6.19.0-3.3_arm64.deb ... 540s Unpacking linux-libc-dev:arm64 (6.19.0-3.3) ... 540s Selecting previously unselected package libcrypt-dev:arm64. 540s Preparing to unpack .../002-libcrypt-dev_1%3a4.5.1-1_arm64.deb ... 540s Unpacking libcrypt-dev:arm64 (1:4.5.1-1) ... 540s Selecting previously unselected package rpcsvc-proto. 540s Preparing to unpack .../003-rpcsvc-proto_1.4.3-1build1_arm64.deb ... 540s Unpacking rpcsvc-proto (1.4.3-1build1) ... 540s Selecting previously unselected package libc6-dev:arm64. 540s Preparing to unpack .../004-libc6-dev_2.42-2ubuntu4_arm64.deb ... 540s Unpacking libc6-dev:arm64 (2.42-2ubuntu4) ... 540s Selecting previously unselected package libisl23:arm64. 540s Preparing to unpack .../005-libisl23_0.27-1build1_arm64.deb ... 540s Unpacking libisl23:arm64 (0.27-1build1) ... 540s Selecting previously unselected package libmpc3:arm64. 540s Preparing to unpack .../006-libmpc3_1.3.1-2_arm64.deb ... 540s Unpacking libmpc3:arm64 (1.3.1-2) ... 540s Selecting previously unselected package cpp-15-aarch64-linux-gnu. 540s Preparing to unpack .../007-cpp-15-aarch64-linux-gnu_15.2.0-12ubuntu1_arm64.deb ... 540s Unpacking cpp-15-aarch64-linux-gnu (15.2.0-12ubuntu1) ... 541s Selecting previously unselected package cpp-15. 541s Preparing to unpack .../008-cpp-15_15.2.0-12ubuntu1_arm64.deb ... 541s Unpacking cpp-15 (15.2.0-12ubuntu1) ... 541s Selecting previously unselected package cpp-aarch64-linux-gnu. 541s Preparing to unpack .../009-cpp-aarch64-linux-gnu_4%3a15.2.0-4ubuntu1_arm64.deb ... 541s Unpacking cpp-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 541s Selecting previously unselected package cpp. 541s Preparing to unpack .../010-cpp_4%3a15.2.0-4ubuntu1_arm64.deb ... 541s Unpacking cpp (4:15.2.0-4ubuntu1) ... 541s Selecting previously unselected package libcc1-0:arm64. 541s Preparing to unpack .../011-libcc1-0_15.2.0-12ubuntu1_arm64.deb ... 541s Unpacking libcc1-0:arm64 (15.2.0-12ubuntu1) ... 541s Selecting previously unselected package libgomp1:arm64. 541s Preparing to unpack .../012-libgomp1_15.2.0-12ubuntu1_arm64.deb ... 541s Unpacking libgomp1:arm64 (15.2.0-12ubuntu1) ... 541s Selecting previously unselected package libitm1:arm64. 541s Preparing to unpack .../013-libitm1_15.2.0-12ubuntu1_arm64.deb ... 541s Unpacking libitm1:arm64 (15.2.0-12ubuntu1) ... 541s Selecting previously unselected package libasan8:arm64. 541s Preparing to unpack .../014-libasan8_15.2.0-12ubuntu1_arm64.deb ... 541s Unpacking libasan8:arm64 (15.2.0-12ubuntu1) ... 541s Selecting previously unselected package liblsan0:arm64. 541s Preparing to unpack .../015-liblsan0_15.2.0-12ubuntu1_arm64.deb ... 541s Unpacking liblsan0:arm64 (15.2.0-12ubuntu1) ... 541s Selecting previously unselected package libtsan2:arm64. 541s Preparing to unpack .../016-libtsan2_15.2.0-12ubuntu1_arm64.deb ... 541s Unpacking libtsan2:arm64 (15.2.0-12ubuntu1) ... 541s Selecting previously unselected package libubsan1:arm64. 541s Preparing to unpack .../017-libubsan1_15.2.0-12ubuntu1_arm64.deb ... 541s Unpacking libubsan1:arm64 (15.2.0-12ubuntu1) ... 541s Selecting previously unselected package libhwasan0:arm64. 541s Preparing to unpack .../018-libhwasan0_15.2.0-12ubuntu1_arm64.deb ... 541s Unpacking libhwasan0:arm64 (15.2.0-12ubuntu1) ... 541s Selecting previously unselected package libgcc-15-dev:arm64. 541s Preparing to unpack .../019-libgcc-15-dev_15.2.0-12ubuntu1_arm64.deb ... 541s Unpacking libgcc-15-dev:arm64 (15.2.0-12ubuntu1) ... 541s Selecting previously unselected package gcc-15-aarch64-linux-gnu. 541s Preparing to unpack .../020-gcc-15-aarch64-linux-gnu_15.2.0-12ubuntu1_arm64.deb ... 541s Unpacking gcc-15-aarch64-linux-gnu (15.2.0-12ubuntu1) ... 542s Selecting previously unselected package gcc-15. 542s Preparing to unpack .../021-gcc-15_15.2.0-12ubuntu1_arm64.deb ... 542s Unpacking gcc-15 (15.2.0-12ubuntu1) ... 542s Selecting previously unselected package gcc-aarch64-linux-gnu. 542s Preparing to unpack .../022-gcc-aarch64-linux-gnu_4%3a15.2.0-4ubuntu1_arm64.deb ... 542s Unpacking gcc-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 542s Selecting previously unselected package gcc. 542s Preparing to unpack .../023-gcc_4%3a15.2.0-4ubuntu1_arm64.deb ... 542s Unpacking gcc (4:15.2.0-4ubuntu1) ... 542s Selecting previously unselected package libstdc++-15-dev:arm64. 542s Preparing to unpack .../024-libstdc++-15-dev_15.2.0-12ubuntu1_arm64.deb ... 542s Unpacking libstdc++-15-dev:arm64 (15.2.0-12ubuntu1) ... 542s Selecting previously unselected package g++-15-aarch64-linux-gnu. 542s Preparing to unpack .../025-g++-15-aarch64-linux-gnu_15.2.0-12ubuntu1_arm64.deb ... 542s Unpacking g++-15-aarch64-linux-gnu (15.2.0-12ubuntu1) ... 542s Selecting previously unselected package g++-15. 542s Preparing to unpack .../026-g++-15_15.2.0-12ubuntu1_arm64.deb ... 542s Unpacking g++-15 (15.2.0-12ubuntu1) ... 542s Selecting previously unselected package g++-aarch64-linux-gnu. 542s Preparing to unpack .../027-g++-aarch64-linux-gnu_4%3a15.2.0-4ubuntu1_arm64.deb ... 542s Unpacking g++-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 542s Selecting previously unselected package g++. 542s Preparing to unpack .../028-g++_4%3a15.2.0-4ubuntu1_arm64.deb ... 542s Unpacking g++ (4:15.2.0-4ubuntu1) ... 542s Selecting previously unselected package build-essential. 542s Preparing to unpack .../029-build-essential_12.12ubuntu2_arm64.deb ... 542s Unpacking build-essential (12.12ubuntu2) ... 542s Selecting previously unselected package dctrl-tools. 542s Preparing to unpack .../030-dctrl-tools_2.24-3build4_arm64.deb ... 543s Unpacking dctrl-tools (2.24-3build4) ... 543s Selecting previously unselected package fonts-dejavu-mono. 543s Preparing to unpack .../031-fonts-dejavu-mono_2.37-8build1_all.deb ... 543s Unpacking fonts-dejavu-mono (2.37-8build1) ... 543s Selecting previously unselected package fonts-dejavu-core. 543s Preparing to unpack .../032-fonts-dejavu-core_2.37-8build1_all.deb ... 543s Unpacking fonts-dejavu-core (2.37-8build1) ... 543s Selecting previously unselected package fontconfig-config. 543s Preparing to unpack .../033-fontconfig-config_2.17.1-3ubuntu1_arm64.deb ... 543s Unpacking fontconfig-config (2.17.1-3ubuntu1) ... 543s Selecting previously unselected package libfontconfig1:arm64. 543s Preparing to unpack .../034-libfontconfig1_2.17.1-3ubuntu1_arm64.deb ... 543s Unpacking libfontconfig1:arm64 (2.17.1-3ubuntu1) ... 543s Selecting previously unselected package fontconfig. 543s Preparing to unpack .../035-fontconfig_2.17.1-3ubuntu1_arm64.deb ... 543s Unpacking fontconfig (2.17.1-3ubuntu1) ... 543s Selecting previously unselected package libgfortran5:arm64. 543s Preparing to unpack .../036-libgfortran5_15.2.0-12ubuntu1_arm64.deb ... 543s Unpacking libgfortran5:arm64 (15.2.0-12ubuntu1) ... 543s Selecting previously unselected package libgfortran-15-dev:arm64. 543s Preparing to unpack .../037-libgfortran-15-dev_15.2.0-12ubuntu1_arm64.deb ... 543s Unpacking libgfortran-15-dev:arm64 (15.2.0-12ubuntu1) ... 543s Selecting previously unselected package gfortran-15-aarch64-linux-gnu. 543s Preparing to unpack .../038-gfortran-15-aarch64-linux-gnu_15.2.0-12ubuntu1_arm64.deb ... 543s Unpacking gfortran-15-aarch64-linux-gnu (15.2.0-12ubuntu1) ... 543s Selecting previously unselected package gfortran-15. 543s Preparing to unpack .../039-gfortran-15_15.2.0-12ubuntu1_arm64.deb ... 543s Unpacking gfortran-15 (15.2.0-12ubuntu1) ... 543s Selecting previously unselected package gfortran-aarch64-linux-gnu. 543s Preparing to unpack .../040-gfortran-aarch64-linux-gnu_4%3a15.2.0-4ubuntu1_arm64.deb ... 543s Unpacking gfortran-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 543s Selecting previously unselected package gfortran. 543s Preparing to unpack .../041-gfortran_4%3a15.2.0-4ubuntu1_arm64.deb ... 543s Unpacking gfortran (4:15.2.0-4ubuntu1) ... 543s Selecting previously unselected package icu-devtools. 543s Preparing to unpack .../042-icu-devtools_78.2-1ubuntu1_arm64.deb ... 543s Unpacking icu-devtools (78.2-1ubuntu1) ... 543s Selecting previously unselected package libblas3:arm64. 544s Preparing to unpack .../043-libblas3_3.12.1-7ubuntu1_arm64.deb ... 544s Unpacking libblas3:arm64 (3.12.1-7ubuntu1) ... 544s Selecting previously unselected package libblas-dev:arm64. 544s Preparing to unpack .../044-libblas-dev_3.12.1-7ubuntu1_arm64.deb ... 544s Unpacking libblas-dev:arm64 (3.12.1-7ubuntu1) ... 544s Selecting previously unselected package libbz2-dev:arm64. 544s Preparing to unpack .../045-libbz2-dev_1.0.8-6build2_arm64.deb ... 544s Unpacking libbz2-dev:arm64 (1.0.8-6build2) ... 544s Selecting previously unselected package libpixman-1-0:arm64. 544s Preparing to unpack .../046-libpixman-1-0_0.46.4-1_arm64.deb ... 544s Unpacking libpixman-1-0:arm64 (0.46.4-1) ... 544s Selecting previously unselected package libxcb-render0:arm64. 544s Preparing to unpack .../047-libxcb-render0_1.17.0-2ubuntu1_arm64.deb ... 544s Unpacking libxcb-render0:arm64 (1.17.0-2ubuntu1) ... 544s Selecting previously unselected package libxcb-shm0:arm64. 544s Preparing to unpack .../048-libxcb-shm0_1.17.0-2ubuntu1_arm64.deb ... 544s Unpacking libxcb-shm0:arm64 (1.17.0-2ubuntu1) ... 544s Selecting previously unselected package libxrender1:arm64. 544s Preparing to unpack .../049-libxrender1_1%3a0.9.12-1_arm64.deb ... 544s Unpacking libxrender1:arm64 (1:0.9.12-1) ... 544s Selecting previously unselected package libcairo2:arm64. 544s Preparing to unpack .../050-libcairo2_1.18.4-3_arm64.deb ... 544s Unpacking libcairo2:arm64 (1.18.4-3) ... 544s Selecting previously unselected package libdatrie1:arm64. 544s Preparing to unpack .../051-libdatrie1_0.2.14-1_arm64.deb ... 544s Unpacking libdatrie1:arm64 (0.2.14-1) ... 544s Selecting previously unselected package libdeflate0:arm64. 544s Preparing to unpack .../052-libdeflate0_1.23-2build1_arm64.deb ... 544s Unpacking libdeflate0:arm64 (1.23-2build1) ... 544s Selecting previously unselected package libdeflate-dev:arm64. 544s Preparing to unpack .../053-libdeflate-dev_1.23-2build1_arm64.deb ... 544s Unpacking libdeflate-dev:arm64 (1.23-2build1) ... 544s Selecting previously unselected package libgraphite2-3:arm64. 544s Preparing to unpack .../054-libgraphite2-3_1.3.14-11ubuntu1_arm64.deb ... 544s Unpacking libgraphite2-3:arm64 (1.3.14-11ubuntu1) ... 544s Selecting previously unselected package libharfbuzz0b:arm64. 544s Preparing to unpack .../055-libharfbuzz0b_12.3.2-1_arm64.deb ... 544s Unpacking libharfbuzz0b:arm64 (12.3.2-1) ... 544s Selecting previously unselected package x11-common. 544s Preparing to unpack .../056-x11-common_1%3a7.7+24ubuntu1_all.deb ... 544s Unpacking x11-common (1:7.7+24ubuntu1) ... 544s Selecting previously unselected package libice6:arm64. 544s Preparing to unpack .../057-libice6_2%3a1.1.1-1build1_arm64.deb ... 544s Unpacking libice6:arm64 (2:1.1.1-1build1) ... 544s Selecting previously unselected package libicu-dev:arm64. 544s Preparing to unpack .../058-libicu-dev_78.2-1ubuntu1_arm64.deb ... 544s Unpacking libicu-dev:arm64 (78.2-1ubuntu1) ... 544s Selecting previously unselected package libjpeg-turbo8:arm64. 544s Preparing to unpack .../059-libjpeg-turbo8_2.1.5-4ubuntu3_arm64.deb ... 544s Unpacking libjpeg-turbo8:arm64 (2.1.5-4ubuntu3) ... 544s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 544s Preparing to unpack .../060-libjpeg-turbo8-dev_2.1.5-4ubuntu3_arm64.deb ... 544s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-4ubuntu3) ... 544s Selecting previously unselected package libjpeg8:arm64. 544s Preparing to unpack .../061-libjpeg8_8c-2ubuntu11_arm64.deb ... 544s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 545s Selecting previously unselected package libjpeg8-dev:arm64. 545s Preparing to unpack .../062-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 545s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 545s Selecting previously unselected package libjpeg-dev:arm64. 545s Preparing to unpack .../063-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 545s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 545s Selecting previously unselected package liblapack3:arm64. 545s Preparing to unpack .../064-liblapack3_3.12.1-7ubuntu1_arm64.deb ... 545s Unpacking liblapack3:arm64 (3.12.1-7ubuntu1) ... 545s Selecting previously unselected package liblapack-dev:arm64. 545s Preparing to unpack .../065-liblapack-dev_3.12.1-7ubuntu1_arm64.deb ... 545s Unpacking liblapack-dev:arm64 (3.12.1-7ubuntu1) ... 545s Selecting previously unselected package liblerc4:arm64. 545s Preparing to unpack .../066-liblerc4_4.0.0+ds-5ubuntu2_arm64.deb ... 545s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu2) ... 545s Selecting previously unselected package libncurses-dev:arm64. 545s Preparing to unpack .../067-libncurses-dev_6.6+20251231-1_arm64.deb ... 545s Unpacking libncurses-dev:arm64 (6.6+20251231-1) ... 545s Selecting previously unselected package libthai-data. 545s Preparing to unpack .../068-libthai-data_0.1.30-1_all.deb ... 545s Unpacking libthai-data (0.1.30-1) ... 545s Selecting previously unselected package libthai0:arm64. 545s Preparing to unpack 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... 545s Unpacking libpaper-utils (2.2.5-0.3build1) ... 545s Selecting previously unselected package libpcre2-16-0:arm64. 545s Preparing to unpack .../075-libpcre2-16-0_10.46-1_arm64.deb ... 545s Unpacking libpcre2-16-0:arm64 (10.46-1) ... 545s Selecting previously unselected package libpcre2-32-0:arm64. 545s Preparing to unpack .../076-libpcre2-32-0_10.46-1_arm64.deb ... 545s Unpacking libpcre2-32-0:arm64 (10.46-1) ... 545s Selecting previously unselected package libpcre2-posix3:arm64. 545s Preparing to unpack .../077-libpcre2-posix3_10.46-1_arm64.deb ... 545s Unpacking libpcre2-posix3:arm64 (10.46-1) ... 545s Selecting previously unselected package libpcre2-dev:arm64. 545s Preparing to unpack .../078-libpcre2-dev_10.46-1_arm64.deb ... 545s Unpacking libpcre2-dev:arm64 (10.46-1) ... 545s Selecting previously unselected package libpkgconf3:arm64. 545s Preparing to unpack .../079-libpkgconf3_1.8.1-4build1_arm64.deb ... 545s Unpacking libpkgconf3:arm64 (1.8.1-4build1) ... 545s Selecting previously unselected package zlib1g-dev:arm64. 545s Preparing to unpack .../080-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu2_arm64.deb ... 545s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu2) ... 545s Selecting previously unselected package libpng-dev:arm64. 545s Preparing to unpack .../081-libpng-dev_1.6.54-1_arm64.deb ... 545s Unpacking libpng-dev:arm64 (1.6.54-1) ... 546s Selecting previously unselected package libreadline-dev:arm64. 546s Preparing to unpack .../082-libreadline-dev_8.3-3_arm64.deb ... 546s Unpacking libreadline-dev:arm64 (8.3-3) ... 546s Selecting previously unselected package libsharpyuv0:arm64. 546s Preparing to unpack .../083-libsharpyuv0_1.5.0-0.1build1_arm64.deb ... 546s Unpacking libsharpyuv0:arm64 (1.5.0-0.1build1) ... 546s Selecting previously unselected package libsm6:arm64. 546s Preparing to unpack .../084-libsm6_2%3a1.2.6-1build1_arm64.deb ... 546s Unpacking libsm6:arm64 (2:1.2.6-1build1) ... 546s Selecting previously unselected package libtcl8.6:arm64. 546s Preparing to unpack .../085-libtcl8.6_8.6.17+dfsg-1build1_arm64.deb ... 546s Unpacking libtcl8.6:arm64 (8.6.17+dfsg-1build1) ... 546s Selecting previously unselected package libjbig0:arm64. 546s Preparing to unpack .../086-libjbig0_2.1-6.1ubuntu3_arm64.deb ... 546s Unpacking libjbig0:arm64 (2.1-6.1ubuntu3) ... 546s Selecting previously unselected package libwebp7:arm64. 546s Preparing to unpack .../087-libwebp7_1.5.0-0.1build1_arm64.deb ... 546s Unpacking libwebp7:arm64 (1.5.0-0.1build1) ... 546s Selecting previously unselected package libtiff6:arm64. 546s Preparing to unpack .../088-libtiff6_4.7.0-3ubuntu3_arm64.deb ... 546s Unpacking libtiff6:arm64 (4.7.0-3ubuntu3) ... 546s Selecting previously unselected package libxft2:arm64. 546s Preparing to unpack .../089-libxft2_2.3.6-1build2_arm64.deb ... 546s Unpacking libxft2:arm64 (2.3.6-1build2) ... 546s Selecting previously unselected package libxss1:arm64. 546s Preparing to unpack .../090-libxss1_1%3a1.2.3-1build4_arm64.deb ... 546s Unpacking libxss1:arm64 (1:1.2.3-1build4) ... 546s Selecting previously unselected package libtk8.6:arm64. 546s Preparing to unpack .../091-libtk8.6_8.6.17-1_arm64.deb ... 546s Unpacking libtk8.6:arm64 (8.6.17-1) ... 546s Selecting previously unselected package libxt6t64:arm64. 546s Preparing to unpack .../092-libxt6t64_1%3a1.2.1-1.3_arm64.deb ... 546s Unpacking libxt6t64:arm64 (1:1.2.1-1.3) ... 546s Selecting previously unselected package libzstd-dev:arm64. 546s Preparing to unpack .../093-libzstd-dev_1.5.7+dfsg-3_arm64.deb ... 546s Unpacking libzstd-dev:arm64 (1.5.7+dfsg-3) ... 546s Selecting previously unselected package zip. 546s Preparing to unpack .../094-zip_3.0-15ubuntu3_arm64.deb ... 546s Unpacking zip (3.0-15ubuntu3) ... 546s Selecting previously unselected package unzip. 546s Preparing to unpack .../095-unzip_6.0-29ubuntu1_arm64.deb ... 546s Unpacking unzip (6.0-29ubuntu1) ... 546s Selecting previously unselected package xdg-utils. 546s Preparing to unpack .../096-xdg-utils_1.2.1-2ubuntu2_all.deb ... 546s Unpacking xdg-utils (1.2.1-2ubuntu2) ... 546s Selecting previously unselected package r-base-core. 546s Preparing to unpack .../097-r-base-core_4.5.2-1ubuntu2_arm64.deb ... 546s Unpacking r-base-core (4.5.2-1ubuntu2) ... 546s Selecting previously unselected package liblzma-dev:arm64. 547s Preparing to unpack .../098-liblzma-dev_5.8.2-2_arm64.deb ... 547s Unpacking liblzma-dev:arm64 (5.8.2-2) ... 547s Selecting previously unselected package pkgconf-bin. 547s Preparing to unpack .../099-pkgconf-bin_1.8.1-4build1_arm64.deb ... 547s Unpacking pkgconf-bin (1.8.1-4build1) ... 547s Selecting previously unselected package pkgconf:arm64. 547s Preparing to unpack .../100-pkgconf_1.8.1-4build1_arm64.deb ... 547s Unpacking pkgconf:arm64 (1.8.1-4build1) ... 547s Selecting previously unselected package libtirpc-dev:arm64. 547s Preparing to unpack .../101-libtirpc-dev_1.3.6+ds-1_arm64.deb ... 547s Unpacking libtirpc-dev:arm64 (1.3.6+ds-1) ... 547s Selecting previously unselected package r-base-dev. 547s Preparing to unpack .../102-r-base-dev_4.5.2-1ubuntu2_all.deb ... 547s Unpacking r-base-dev (4.5.2-1ubuntu2) ... 547s Selecting previously unselected package pkg-r-autopkgtest. 547s Preparing to unpack .../103-pkg-r-autopkgtest_20250812_all.deb ... 547s Unpacking pkg-r-autopkgtest (20250812) ... 547s Selecting previously unselected package r-bioc-biocgenerics. 547s Preparing to unpack .../104-r-bioc-biocgenerics_0.52.0-2_all.deb ... 547s Unpacking r-bioc-biocgenerics (0.52.0-2) ... 547s Selecting previously unselected package r-bioc-biobase. 547s Preparing to unpack .../105-r-bioc-biobase_2.66.0-2_arm64.deb ... 547s Unpacking r-bioc-biobase (2.66.0-2) ... 547s Selecting previously unselected package r-bioc-s4vectors. 547s Preparing to unpack .../106-r-bioc-s4vectors_0.44.0+dfsg-2_arm64.deb ... 547s Unpacking r-bioc-s4vectors (0.44.0+dfsg-2) ... 547s Selecting previously unselected package r-bioc-iranges. 547s Preparing to unpack .../107-r-bioc-iranges_2.40.1-3_arm64.deb ... 547s Unpacking r-bioc-iranges (2.40.1-3) ... 547s Selecting previously unselected package r-cran-dbi. 547s Preparing to unpack .../108-r-cran-dbi_1.2.3-1build1_all.deb ... 547s Unpacking r-cran-dbi (1.2.3-1build1) ... 547s Selecting previously unselected package r-cran-bit. 547s Preparing to unpack .../109-r-cran-bit_4.6.0+dfsg-1_arm64.deb ... 547s Unpacking r-cran-bit (4.6.0+dfsg-1) ... 547s Selecting previously unselected package r-cran-bit64. 547s Preparing to unpack .../110-r-cran-bit64_4.6.0-1-4_arm64.deb ... 547s Unpacking r-cran-bit64 (4.6.0-1-4) ... 547s Selecting previously unselected package r-cran-rlang. 547s Preparing to unpack .../111-r-cran-rlang_1.1.5-3_arm64.deb ... 547s Unpacking r-cran-rlang (1.1.5-3) ... 547s Selecting previously unselected package r-cran-cli. 547s Preparing to unpack .../112-r-cran-cli_3.6.4-1_arm64.deb ... 547s Unpacking r-cran-cli (3.6.4-1) ... 547s Selecting previously unselected package r-cran-glue. 547s Preparing to unpack .../113-r-cran-glue_1.8.0-1_arm64.deb ... 547s Unpacking r-cran-glue (1.8.0-1) ... 547s Selecting previously unselected package r-cran-lifecycle. 547s Preparing to unpack .../114-r-cran-lifecycle_1.0.5+dfsg-1_all.deb ... 547s Unpacking r-cran-lifecycle (1.0.5+dfsg-1) ... 547s Selecting previously unselected package r-cran-vctrs. 547s Preparing to unpack .../115-r-cran-vctrs_0.6.5-1_arm64.deb ... 547s Unpacking r-cran-vctrs (0.6.5-1) ... 547s Selecting previously unselected package r-cran-blob. 547s Preparing to unpack .../116-r-cran-blob_1.3.0-1_all.deb ... 547s Unpacking r-cran-blob (1.3.0-1) ... 547s Selecting previously unselected package r-cran-fastmap. 548s Preparing to unpack .../117-r-cran-fastmap_1.2.0-1_arm64.deb ... 548s Unpacking r-cran-fastmap (1.2.0-1) ... 548s Selecting previously unselected package r-cran-cachem. 548s Preparing to unpack .../118-r-cran-cachem_1.1.0-1_arm64.deb ... 548s Unpacking r-cran-cachem (1.1.0-1) ... 548s Selecting previously unselected package r-cran-memoise. 548s Preparing to unpack .../119-r-cran-memoise_2.0.1-1build1_all.deb ... 548s Unpacking r-cran-memoise (2.0.1-1build1) ... 548s Selecting previously unselected package r-cran-pkgconfig. 548s Preparing to unpack .../120-r-cran-pkgconfig_2.0.3-2build2_all.deb ... 548s Unpacking r-cran-pkgconfig (2.0.3-2build2) ... 548s Selecting previously unselected package r-cran-plogr. 548s Preparing to unpack .../121-r-cran-plogr_0.2.0-3build2_all.deb ... 548s Unpacking r-cran-plogr (0.2.0-3build2) ... 548s Selecting previously unselected package r-cran-cpp11. 548s Preparing to unpack .../122-r-cran-cpp11_0.5.3-1_all.deb ... 548s Unpacking r-cran-cpp11 (0.5.3-1) ... 548s Selecting previously unselected package r-cran-rsqlite. 548s Preparing to unpack .../123-r-cran-rsqlite_2.3.9-1_arm64.deb ... 548s Unpacking r-cran-rsqlite (2.3.9-1) ... 548s Selecting previously unselected package r-cran-curl. 548s Preparing to unpack .../124-r-cran-curl_7.0.0+dfsg-1_arm64.deb ... 548s Unpacking r-cran-curl (7.0.0+dfsg-1) ... 548s Selecting previously unselected package r-cran-jsonlite. 548s Preparing to unpack .../125-r-cran-jsonlite_1.9.1+dfsg-1_arm64.deb ... 548s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ... 548s Selecting previously unselected package r-cran-mime. 548s Preparing to unpack .../126-r-cran-mime_0.12-2_arm64.deb ... 548s Unpacking r-cran-mime (0.12-2) ... 548s Selecting previously unselected package r-cran-sys. 548s Preparing to unpack .../127-r-cran-sys_3.4.3-1_arm64.deb ... 548s Unpacking r-cran-sys (3.4.3-1) ... 548s Selecting previously unselected package r-cran-askpass. 548s Preparing to unpack .../128-r-cran-askpass_1.2.1-1_arm64.deb ... 548s Unpacking r-cran-askpass (1.2.1-1) ... 548s Selecting previously unselected package r-cran-openssl. 548s Preparing to unpack .../129-r-cran-openssl_2.3.2+dfsg-1_arm64.deb ... 548s Unpacking r-cran-openssl (2.3.2+dfsg-1) ... 548s Selecting previously unselected package r-cran-r6. 548s Preparing to unpack .../130-r-cran-r6_2.6.1-1_all.deb ... 548s Unpacking r-cran-r6 (2.6.1-1) ... 548s Selecting previously unselected package r-cran-httr. 548s Preparing to unpack .../131-r-cran-httr_1.4.7+dfsg-1_all.deb ... 548s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 548s Selecting previously unselected package r-cran-png. 548s Preparing to unpack .../132-r-cran-png_0.1-8-1build2_arm64.deb ... 548s Unpacking r-cran-png (0.1-8-1build2) ... 548s Selecting previously unselected package r-bioc-zlibbioc. 548s Preparing to unpack .../133-r-bioc-zlibbioc_1.52.0+dfsg-2_all.deb ... 548s Unpacking r-bioc-zlibbioc (1.52.0+dfsg-2) ... 548s Selecting previously unselected package r-bioc-xvector. 548s Preparing to unpack .../134-r-bioc-xvector_0.46.0-2_arm64.deb ... 548s Unpacking r-bioc-xvector (0.46.0-2) ... 548s Selecting previously unselected package r-bioc-ucsc.utils. 548s Preparing to unpack .../135-r-bioc-ucsc.utils_1.2.0+ds-2_all.deb ... 548s Unpacking r-bioc-ucsc.utils (1.2.0+ds-2) ... 548s Selecting previously unselected package r-bioc-genomeinfodbdata. 548s Preparing to unpack .../136-r-bioc-genomeinfodbdata_1.2.13-2_all.deb ... 548s Unpacking r-bioc-genomeinfodbdata (1.2.13-2) ... 548s Selecting previously unselected package r-bioc-genomeinfodb. 548s Preparing to unpack .../137-r-bioc-genomeinfodb_1.42.3+dfsg-1_all.deb ... 548s Unpacking r-bioc-genomeinfodb (1.42.3+dfsg-1) ... 548s Selecting previously unselected package r-cran-crayon. 549s Preparing to unpack .../138-r-cran-crayon_1.5.3-1_all.deb ... 549s Unpacking r-cran-crayon (1.5.3-1) ... 549s Selecting previously unselected package r-bioc-biostrings. 549s Preparing to unpack .../139-r-bioc-biostrings_2.74.1+dfsg-2_arm64.deb ... 549s Unpacking r-bioc-biostrings (2.74.1+dfsg-2) ... 549s Selecting previously unselected package r-bioc-keggrest. 549s Preparing to unpack .../140-r-bioc-keggrest_1.46.0+dfsg-3_all.deb ... 549s Unpacking r-bioc-keggrest (1.46.0+dfsg-3) ... 549s Selecting previously unselected package r-bioc-annotationdbi. 549s Preparing to unpack .../141-r-bioc-annotationdbi_1.68.0-2_all.deb ... 549s Unpacking r-bioc-annotationdbi (1.68.0-2) ... 549s Selecting previously unselected package r-cran-xml. 549s Preparing to unpack .../142-r-cran-xml_3.99-0.20-1_arm64.deb ... 549s Unpacking r-cran-xml (3.99-0.20-1) ... 549s Selecting previously unselected package r-cran-xtable. 549s Preparing to unpack .../143-r-cran-xtable_1%3a1.8-4-2build1_all.deb ... 549s Unpacking r-cran-xtable (1:1.8-4-2build1) ... 549s Selecting previously unselected package r-bioc-annotate. 549s Preparing to unpack .../144-r-bioc-annotate_1.84.0+dfsg-2_all.deb ... 549s Unpacking r-bioc-annotate (1.84.0+dfsg-2) ... 549s Selecting previously unselected package r-cran-lattice. 549s Preparing to unpack .../145-r-cran-lattice_0.22-9-1_arm64.deb ... 549s Unpacking r-cran-lattice (0.22-9-1) ... 549s Selecting previously unselected package r-cran-locfit. 549s Preparing to unpack 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Setting up gfortran (4:15.2.0-4ubuntu1) ... 553s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 553s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 553s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 553s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 553s Setting up r-cran-lifecycle (1.0.5+dfsg-1) ... 553s Setting up r-cran-bitops (1.0-9-1) ... 553s Setting up r-cran-bit64 (4.6.0-1-4) ... 553s Setting up r-bioc-zlibbioc (1.52.0+dfsg-2) ... 553s Setting up r-cran-askpass (1.2.1-1) ... 553s Setting up r-cran-fastmap (1.2.0-1) ... 553s Setting up r-cran-png (0.1-8-1build2) ... 553s Setting up r-bioc-biobase (2.66.0-2) ... 553s Setting up r-cran-jsonlite (1.9.1+dfsg-1) 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... 553s Setting up pkg-r-autopkgtest (20250812) ... 553s Setting up r-bioc-xvector (0.46.0-2) ... 553s Setting up r-cran-gplots (3.3.0-1) ... 553s Setting up r-cran-rsqlite (2.3.9-1) ... 553s Setting up r-bioc-ucsc.utils (1.2.0+ds-2) ... 553s Setting up r-bioc-genomeinfodb (1.42.3+dfsg-1) ... 553s Setting up r-bioc-biostrings (2.74.1+dfsg-2) ... 553s Setting up r-bioc-keggrest (1.46.0+dfsg-3) ... 553s Setting up r-bioc-annotationdbi (1.68.0-2) ... 553s Setting up r-bioc-annotate (1.84.0+dfsg-2) ... 553s Setting up r-bioc-genefilter (1.88.0-2) ... 553s Setting up r-bioc-geneplotter (1.84.0+dfsg-2) ... 553s Setting up r-bioc-deseq (1.39.0-17) ... 553s Processing triggers for man-db (2.13.1-1build1) ... 554s Processing triggers for install-info (7.2-5) ... 554s Processing triggers for libc-bin (2.42-2ubuntu4) ... 555s autopkgtest [22:53:40]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 555s autopkgtest [22:53:40]: test pkg-r-autopkgtest: [----------------------- 555s Test: Try to load the R library DESeq 555s 555s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 555s Copyright (C) 2025 The R Foundation for Statistical Computing 555s Platform: aarch64-unknown-linux-gnu 555s 555s R is free software and comes with ABSOLUTELY NO WARRANTY. 555s You are welcome to redistribute it under certain conditions. 555s Type 'license()' or 'licence()' for distribution details. 555s 555s R is a collaborative project with many contributors. 555s Type 'contributors()' for more information and 555s 'citation()' on how to cite R or R packages in publications. 555s 555s Type 'demo()' for some demos, 'help()' for on-line help, or 555s 'help.start()' for an HTML browser interface to help. 555s Type 'q()' to quit R. 555s 555s > library('DESeq') 555s Loading required package: BiocGenerics 556s 556s Attaching package: ‘BiocGenerics’ 556s 556s The following objects are masked from ‘package:stats’: 556s 556s IQR, mad, sd, var, xtabs 556s 556s The following objects are masked from ‘package:base’: 556s 556s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 556s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 556s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 556s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 556s Position, rank, rbind, Reduce, rownames, sapply, saveRDS, setdiff, 556s table, tapply, union, unique, unsplit, which.max, which.min 556s 556s Loading required package: Biobase 556s Welcome to Bioconductor 556s 556s Vignettes contain introductory material; view with 556s 'browseVignettes()'. To cite Bioconductor, see 556s 'citation("Biobase")', and for packages 'citation("pkgname")'. 556s 556s Loading required package: locfit 556s locfit 1.5-9.12 2025-03-05 556s Loading required package: lattice 560s Welcome to 'DESeq'. For improved performance, usability and 560s functionality, please consider migrating to 'DESeq2'. 560s > 560s find: ‘tests’: No such file or directory 560s autopkgtest [22:53:45]: test pkg-r-autopkgtest: -----------------------] 561s autopkgtest [22:53:46]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 561s pkg-r-autopkgtest PASS 561s autopkgtest [22:53:46]: @@@@@@@@@@@@@@@@@@@@ summary 561s pkg-r-autopkgtest PASS