0s autopkgtest [23:15:37]: starting date and time: 2026-02-09 23:15:37+0000 0s autopkgtest [23:15:37]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [23:15:37]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.vyx03cr8/out --timeout-copy=6000 --needs-internet=try --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-cran-ggplot2 --apt-upgrade r-bioc-degreport --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-cran-ggplot2/4.0.2+dfsg-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-arm64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@sto01-arm64-17.secgroup --name adt-resolute-arm64-r-bioc-degreport-20260209-231537-juju-7f2275-prod-proposed-migration-environment-15-80214749-71c7-4482-bb4d-3893efcc5f45 --image adt/ubuntu-resolute-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-autopkgtest-workers-arm64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 3s Creating nova instance adt-resolute-arm64-r-bioc-degreport-20260209-231537-juju-7f2275-prod-proposed-migration-environment-15-80214749-71c7-4482-bb4d-3893efcc5f45 from image adt/ubuntu-resolute-arm64-server-20260209.img (UUID 793037ca-75af-461b-82de-f8081300b2e3)... 115s autopkgtest [23:17:32]: testbed dpkg architecture: arm64 115s autopkgtest [23:17:32]: testbed apt version: 3.1.15 116s autopkgtest [23:17:33]: @@@@@@@@@@@@@@@@@@@@ test bed setup 116s autopkgtest [23:17:33]: testbed release detected to be: None 117s autopkgtest [23:17:34]: updating testbed package index (apt update) 117s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 117s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 117s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 117s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 117s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [176 kB] 117s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1645 kB] 119s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [29.4 kB] 120s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 Packages [246 kB] 120s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 c-n-f Metadata [6216 B] 120s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 c-n-f Metadata [304 B] 120s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 Packages [1580 kB] 122s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 c-n-f Metadata [32.0 kB] 122s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 Packages [21.7 kB] 122s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 c-n-f Metadata [688 B] 123s Fetched 3862 kB in 5s (752 kB/s) 124s Reading package lists... 125s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 125s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 125s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 125s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 126s Reading package lists... 126s Reading package lists... 126s Building dependency tree... 126s Reading state information... 127s Calculating upgrade... 127s The following packages will be upgraded: 127s cryptsetup-bin dracut-install iproute2 iptables libcryptsetup12 libip4tc2 127s libip6tc2 libxtables12 wget 127s 9 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 127s Need to get 2534 kB of archives. 127s After this operation, 18.4 kB of additional disk space will be used. 127s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 iptables arm64 1.8.11-2ubuntu3 [386 kB] 127s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 libip4tc2 arm64 1.8.11-2ubuntu3 [24.3 kB] 127s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 libip6tc2 arm64 1.8.11-2ubuntu3 [24.7 kB] 127s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 libxtables12 arm64 1.8.11-2ubuntu3 [36.7 kB] 127s Get:5 http://ftpmaster.internal/ubuntu resolute/main arm64 iproute2 arm64 6.18.0-1ubuntu1 [1171 kB] 130s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 libcryptsetup12 arm64 2:2.8.0-1ubuntu3 [274 kB] 130s Get:7 http://ftpmaster.internal/ubuntu resolute/main arm64 wget arm64 1.25.0-2ubuntu4 [344 kB] 130s Get:8 http://ftpmaster.internal/ubuntu resolute/main arm64 cryptsetup-bin arm64 2:2.8.0-1ubuntu3 [227 kB] 130s Get:9 http://ftpmaster.internal/ubuntu resolute/main arm64 dracut-install arm64 109-11ubuntu1 [45.3 kB] 130s Fetched 2534 kB in 3s (881 kB/s) 130s dpkg-preconfigure: unable to re-open stdin: No such file or directory 130s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 136597 files and directories currently installed.) 130s Preparing to unpack .../0-iptables_1.8.11-2ubuntu3_arm64.deb ... 130s Unpacking iptables (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 130s Preparing to unpack .../1-libip4tc2_1.8.11-2ubuntu3_arm64.deb ... 131s Unpacking libip4tc2:arm64 (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 131s Preparing to unpack .../2-libip6tc2_1.8.11-2ubuntu3_arm64.deb ... 131s Unpacking libip6tc2:arm64 (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 131s Preparing to unpack .../3-libxtables12_1.8.11-2ubuntu3_arm64.deb ... 131s Unpacking libxtables12:arm64 (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 131s Preparing to unpack .../4-iproute2_6.18.0-1ubuntu1_arm64.deb ... 131s Unpacking iproute2 (6.18.0-1ubuntu1) over (6.16.0-1ubuntu3) ... 131s Preparing to unpack .../5-libcryptsetup12_2%3a2.8.0-1ubuntu3_arm64.deb ... 131s Unpacking libcryptsetup12:arm64 (2:2.8.0-1ubuntu3) over (2:2.8.0-1ubuntu2) ... 131s Preparing to unpack .../6-wget_1.25.0-2ubuntu4_arm64.deb ... 131s Unpacking wget (1.25.0-2ubuntu4) over (1.25.0-2ubuntu3) ... 131s Preparing to unpack .../7-cryptsetup-bin_2%3a2.8.0-1ubuntu3_arm64.deb ... 131s Unpacking cryptsetup-bin (2:2.8.0-1ubuntu3) over (2:2.8.0-1ubuntu2) ... 131s Preparing to unpack .../8-dracut-install_109-11ubuntu1_arm64.deb ... 131s Unpacking dracut-install (109-11ubuntu1) over (109-9ubuntu1) ... 131s Setting up libip4tc2:arm64 (1.8.11-2ubuntu3) ... 131s Setting up wget (1.25.0-2ubuntu4) ... 131s Setting up libip6tc2:arm64 (1.8.11-2ubuntu3) ... 131s Setting up libxtables12:arm64 (1.8.11-2ubuntu3) ... 131s Setting up dracut-install (109-11ubuntu1) ... 131s Setting up libcryptsetup12:arm64 (2:2.8.0-1ubuntu3) ... 131s Setting up cryptsetup-bin (2:2.8.0-1ubuntu3) ... 131s Setting up iptables (1.8.11-2ubuntu3) ... 132s Setting up iproute2 (6.18.0-1ubuntu1) ... 132s Processing triggers for man-db (2.13.1-1build1) ... 133s Processing triggers for install-info (7.2-5) ... 133s Processing triggers for libc-bin (2.42-2ubuntu4) ... 133s autopkgtest [23:17:50]: upgrading testbed (apt dist-upgrade and autopurge) 133s Reading package lists... 133s Building dependency tree... 133s Reading state information... 134s Calculating upgrade... 134s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 134s Reading package lists... 134s Building dependency tree... 134s Reading state information... 134s Solving dependencies... 135s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 137s autopkgtest [23:17:54]: testbed running kernel: Linux 6.19.0-3-generic #3-Ubuntu SMP PREEMPT_DYNAMIC Fri Jan 23 19:46:27 UTC 2026 137s autopkgtest [23:17:54]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-degreport 156s Get:1 http://ftpmaster.internal/ubuntu resolute/universe r-bioc-degreport 1.42.0+dfsg-2 (dsc) [2622 B] 156s Get:2 http://ftpmaster.internal/ubuntu resolute/universe r-bioc-degreport 1.42.0+dfsg-2 (tar) [11.2 MB] 156s Get:3 http://ftpmaster.internal/ubuntu resolute/universe r-bioc-degreport 1.42.0+dfsg-2 (diff) [3880 B] 156s gpgv: Signature made Mon Jan 13 13:36:51 2025 UTC 156s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 156s gpgv: issuer "crusoe@debian.org" 156s gpgv: Can't check signature: No public key 156s dpkg-source: warning: cannot verify inline signature for ./r-bioc-degreport_1.42.0+dfsg-2.dsc: no acceptable signature found 157s autopkgtest [23:18:14]: testing package r-bioc-degreport version 1.42.0+dfsg-2 162s autopkgtest [23:18:19]: build not needed 167s autopkgtest [23:18:24]: test pkg-r-autopkgtest: preparing testbed 168s Reading package lists... 168s Building dependency tree... 168s Reading state information... 168s Solving dependencies... 168s The following NEW packages will be installed: 168s build-essential cpp cpp-15 cpp-15-aarch64-linux-gnu cpp-aarch64-linux-gnu 168s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 168s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 168s g++ g++-15 g++-15-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-15 168s gcc-15-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-15 168s gfortran-15-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 168s javascript-common libasan8 libbibtex-parser-perl libblas-dev libblas3 168s libboost-dev libboost1.90-dev libbz2-dev libc-dev-bin libc6-dev libcairo2 168s libcc1-0 libcrypt-dev libdatrie1 libdeflate-dev libdeflate0 libfontconfig1 168s libgcc-15-dev libgfortran-15-dev libgfortran5 libgomp1 libgraphite2-3 168s libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl libisl23 168s libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 168s libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim 168s libjs-highlight.js libjs-jquery libjs-jquery-datatables 168s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 168s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 168s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 168s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblerc4 168s liblsan0 liblua5.4-0 liblzma-dev libmpc3 libmpfi0 libncurses-dev 168s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 168s libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 168s libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1 libreadline-dev 168s libsharpyuv0 libsm6 libstdc++-15-dev libsynctex2 libtcl8.6 libteckit0 168s libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 168s libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 168s libxpm4 libxrender1 libxss1 libxt6t64 libzstd-dev libzzip-0-13t64 168s linux-libc-dev node-bootstrap-sass node-html5shiv node-normalize.css pandoc 168s pandoc-data pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 168s r-bioc-all r-bioc-annotationdbi r-bioc-biobase r-bioc-biocgenerics 168s r-bioc-biocparallel r-bioc-biocstyle r-bioc-biocversion r-bioc-biostrings 168s r-bioc-complexheatmap r-bioc-consensusclusterplus r-bioc-degreport 168s r-bioc-delayedarray r-bioc-deseq2 r-bioc-edger r-bioc-genomeinfodb 168s r-bioc-genomeinfodbdata r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest 168s r-bioc-limma r-bioc-matrixgenerics r-bioc-s4arrays r-bioc-s4vectors 168s r-bioc-sparsearray r-bioc-summarizedexperiment r-bioc-ucsc.utils 168s r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-backports 168s r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit r-cran-bit64 168s r-cran-blob r-cran-bookdown r-cran-brio r-cran-broom r-cran-bslib 168s r-cran-cachem r-cran-callr r-cran-circlize r-cran-cli r-cran-clue 168s r-cran-cluster r-cran-codetools r-cran-colorspace r-cran-commonmark 168s r-cran-cowplot r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi 168s r-cran-dendextend r-cran-desc r-cran-diffobj r-cran-digest r-cran-doparallel 168s r-cran-dplyr r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap 168s r-cran-fontawesome r-cran-foreach r-cran-formatr r-cran-fs 168s r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-getoptlong 168s r-cran-ggdendro r-cran-ggplot2 r-cran-ggrepel r-cran-globaloptions 168s r-cran-glue r-cran-gparotation r-cran-gridextra r-cran-gtable r-cran-highr 168s r-cran-htmltools r-cran-httpuv r-cran-httr r-cran-isoband r-cran-iterators 168s r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-labeling 168s r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lifecycle r-cran-littler 168s r-cran-locfit r-cran-logging r-cran-magrittr r-cran-mass r-cran-matrix 168s r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-mnormt r-cran-nlme 168s r-cran-openssl r-cran-pheatmap r-cran-pillar r-cran-pkgbuild 168s r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-plyr 168s r-cran-png r-cran-praise r-cran-processx r-cran-promises r-cran-ps 168s r-cran-psych r-cran-purrr r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer 168s r-cran-rcpp r-cran-rcpparmadillo r-cran-reshape r-cran-rjson r-cran-rlang 168s r-cran-rmarkdown r-cran-rprojroot r-cran-rsqlite r-cran-s7 r-cran-sass 168s r-cran-scales r-cran-shape r-cran-shiny r-cran-snow r-cran-sourcetools 168s r-cran-statmod r-cran-stringi r-cran-stringr r-cran-sys r-cran-testthat 168s r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-utf8 168s r-cran-vctrs r-cran-viridis r-cran-viridislite r-cran-waldo r-cran-withr 168s r-cran-xfun r-cran-xtable r-cran-yaml rpcsvc-proto t1utils tex-common 168s texlive-base texlive-bibtex-extra texlive-binaries texlive-latex-base unzip 168s x11-common xdg-utils zip zlib1g-dev 168s 0 upgraded, 314 newly installed, 0 to remove and 0 not upgraded. 168s Need to get 471 MB of archives. 168s After this operation, 1433 MB of additional disk space will be used. 168s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 libc-dev-bin arm64 2.42-2ubuntu4 [22.5 kB] 168s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 linux-libc-dev arm64 6.19.0-3.3 [1819 kB] 172s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 libcrypt-dev arm64 1:4.5.1-1 [123 kB] 172s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 rpcsvc-proto arm64 1.4.3-1build1 [65.6 kB] 172s Get:5 http://ftpmaster.internal/ubuntu resolute/main arm64 libc6-dev arm64 2.42-2ubuntu4 [1765 kB] 176s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 libisl23 arm64 0.27-1build1 [676 kB] 177s Get:7 http://ftpmaster.internal/ubuntu resolute/main arm64 libmpc3 arm64 1.3.1-2 [55.6 kB] 177s Get:8 http://ftpmaster.internal/ubuntu resolute/main arm64 cpp-15-aarch64-linux-gnu arm64 15.2.0-12ubuntu1 [11.7 MB] 199s Get:9 http://ftpmaster.internal/ubuntu resolute/main arm64 cpp-15 arm64 15.2.0-12ubuntu1 [1030 B] 199s Get:10 http://ftpmaster.internal/ubuntu resolute/main arm64 cpp-aarch64-linux-gnu arm64 4:15.2.0-4ubuntu1 [5736 B] 199s Get:11 http://ftpmaster.internal/ubuntu resolute/main arm64 cpp arm64 4:15.2.0-4ubuntu1 [22.4 kB] 199s Get:12 http://ftpmaster.internal/ubuntu resolute/main arm64 libcc1-0 arm64 15.2.0-12ubuntu1 [49.0 kB] 199s Get:13 http://ftpmaster.internal/ubuntu resolute/main arm64 libgomp1 arm64 15.2.0-12ubuntu1 [147 kB] 199s Get:14 http://ftpmaster.internal/ubuntu resolute/main arm64 libitm1 arm64 15.2.0-12ubuntu1 [27.8 kB] 199s Get:15 http://ftpmaster.internal/ubuntu resolute/main arm64 libasan8 arm64 15.2.0-12ubuntu1 [2920 kB] 203s Get:16 http://ftpmaster.internal/ubuntu resolute/main arm64 liblsan0 arm64 15.2.0-12ubuntu1 [1316 kB] 206s Get:17 http://ftpmaster.internal/ubuntu resolute/main arm64 libtsan2 arm64 15.2.0-12ubuntu1 [2688 kB] 210s Get:18 http://ftpmaster.internal/ubuntu resolute/main arm64 libubsan1 arm64 15.2.0-12ubuntu1 [1175 kB] 212s Get:19 http://ftpmaster.internal/ubuntu resolute/main arm64 libhwasan0 arm64 15.2.0-12ubuntu1 [1638 kB] 215s Get:20 http://ftpmaster.internal/ubuntu resolute/main arm64 libgcc-15-dev arm64 15.2.0-12ubuntu1 [2600 kB] 219s Get:21 http://ftpmaster.internal/ubuntu resolute/main arm64 gcc-15-aarch64-linux-gnu arm64 15.2.0-12ubuntu1 [23.1 MB] 261s Get:22 http://ftpmaster.internal/ubuntu resolute/main arm64 gcc-15 arm64 15.2.0-12ubuntu1 [519 kB] 261s Get:23 http://ftpmaster.internal/ubuntu resolute/main arm64 gcc-aarch64-linux-gnu arm64 4:15.2.0-4ubuntu1 [1206 B] 261s Get:24 http://ftpmaster.internal/ubuntu resolute/main arm64 gcc arm64 4:15.2.0-4ubuntu1 [5016 B] 261s Get:25 http://ftpmaster.internal/ubuntu resolute/main arm64 libstdc++-15-dev arm64 15.2.0-12ubuntu1 [2549 kB] 266s Get:26 http://ftpmaster.internal/ubuntu resolute/main arm64 g++-15-aarch64-linux-gnu arm64 15.2.0-12ubuntu1 [13.2 MB] 288s Get:27 http://ftpmaster.internal/ubuntu resolute/main arm64 g++-15 arm64 15.2.0-12ubuntu1 [25.3 kB] 288s Get:28 http://ftpmaster.internal/ubuntu resolute/main arm64 g++-aarch64-linux-gnu arm64 4:15.2.0-4ubuntu1 [956 B] 288s Get:29 http://ftpmaster.internal/ubuntu resolute/main arm64 g++ arm64 4:15.2.0-4ubuntu1 [1080 B] 288s Get:30 http://ftpmaster.internal/ubuntu resolute/main arm64 build-essential arm64 12.12ubuntu2 [5254 B] 288s Get:31 http://ftpmaster.internal/ubuntu resolute/main arm64 dctrl-tools arm64 2.24-3build4 [102 kB] 288s Get:32 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-mono all 2.37-8build1 [502 kB] 288s Get:33 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-core all 2.37-8build1 [834 kB] 290s Get:34 http://ftpmaster.internal/ubuntu resolute/main arm64 fontconfig-config arm64 2.17.1-3ubuntu1 [38.5 kB] 290s Get:35 http://ftpmaster.internal/ubuntu resolute/main arm64 libfontconfig1 arm64 2.17.1-3ubuntu1 [144 kB] 290s Get:36 http://ftpmaster.internal/ubuntu resolute/main arm64 fontconfig arm64 2.17.1-3ubuntu1 [181 kB] 290s Get:37 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1build1 [531 kB] 291s Get:38 http://ftpmaster.internal/ubuntu resolute/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-6 [119 kB] 291s Get:39 http://ftpmaster.internal/ubuntu resolute/universe arm64 fonts-lmodern all 2.005-1build1 [4788 kB] 300s Get:40 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-mathjax all 2.7.9+dfsg-1build1 [2283 kB] 304s Get:41 http://ftpmaster.internal/ubuntu resolute/main arm64 libgfortran5 arm64 15.2.0-12ubuntu1 [451 kB] 304s Get:42 http://ftpmaster.internal/ubuntu resolute/main arm64 libgfortran-15-dev arm64 15.2.0-12ubuntu1 [490 kB] 304s Get:43 http://ftpmaster.internal/ubuntu resolute/main arm64 gfortran-15-aarch64-linux-gnu arm64 15.2.0-12ubuntu1 [12.5 MB] 325s Get:44 http://ftpmaster.internal/ubuntu resolute/main arm64 gfortran-15 arm64 15.2.0-12ubuntu1 [18.1 kB] 325s Get:45 http://ftpmaster.internal/ubuntu resolute/main arm64 gfortran-aarch64-linux-gnu arm64 4:15.2.0-4ubuntu1 [1022 B] 325s Get:46 http://ftpmaster.internal/ubuntu resolute/main arm64 gfortran arm64 4:15.2.0-4ubuntu1 [1160 B] 325s Get:47 http://ftpmaster.internal/ubuntu resolute/main arm64 icu-devtools arm64 78.2-1ubuntu1 [207 kB] 325s Get:48 http://ftpmaster.internal/ubuntu resolute/main arm64 javascript-common all 12+nmu1build1 [4864 B] 325s Get:49 http://ftpmaster.internal/ubuntu resolute/main arm64 libio-string-perl all 1.08-4 [11.1 kB] 325s Get:50 http://ftpmaster.internal/ubuntu resolute/universe arm64 liblatex-tounicode-perl all 1.93-1 [29.2 kB] 325s Get:51 http://ftpmaster.internal/ubuntu resolute/universe arm64 libbibtex-parser-perl all 1.93+dfsg-1 [17.4 kB] 325s Get:52 http://ftpmaster.internal/ubuntu resolute/main arm64 libblas3 arm64 3.12.1-7ubuntu1 [181 kB] 325s Get:53 http://ftpmaster.internal/ubuntu resolute/main arm64 libblas-dev arm64 3.12.1-7ubuntu1 [160 kB] 325s Get:54 http://ftpmaster.internal/ubuntu resolute/main arm64 libboost1.90-dev arm64 1.90.0-2ubuntu1 [11.5 MB] 348s Get:55 http://ftpmaster.internal/ubuntu resolute/main arm64 libboost-dev arm64 1.90.0.0ubuntu3 [4764 B] 348s Get:56 http://ftpmaster.internal/ubuntu resolute/main arm64 libbz2-dev arm64 1.0.8-6build2 [34.9 kB] 348s Get:57 http://ftpmaster.internal/ubuntu resolute/main arm64 libpixman-1-0 arm64 0.46.4-1 [204 kB] 348s Get:58 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-render0 arm64 1.17.0-2ubuntu1 [16.4 kB] 348s Get:59 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-shm0 arm64 1.17.0-2ubuntu1 [5938 B] 348s Get:60 http://ftpmaster.internal/ubuntu resolute/main arm64 libxrender1 arm64 1:0.9.12-1 [19.5 kB] 348s Get:61 http://ftpmaster.internal/ubuntu resolute/main arm64 libcairo2 arm64 1.18.4-3 [556 kB] 349s Get:62 http://ftpmaster.internal/ubuntu resolute/main arm64 libdatrie1 arm64 0.2.14-1 [19.6 kB] 349s Get:63 http://ftpmaster.internal/ubuntu resolute/main arm64 libdeflate0 arm64 1.23-2build1 [46.8 kB] 349s Get:64 http://ftpmaster.internal/ubuntu resolute/main arm64 libdeflate-dev arm64 1.23-2build1 [54.3 kB] 349s Get:65 http://ftpmaster.internal/ubuntu resolute/main arm64 libgraphite2-3 arm64 1.3.14-11ubuntu1 [72.1 kB] 349s Get:66 http://ftpmaster.internal/ubuntu resolute/main arm64 libharfbuzz0b arm64 12.3.2-1 [510 kB] 349s Get:67 http://ftpmaster.internal/ubuntu resolute/main arm64 x11-common all 1:7.7+24ubuntu1 [22.4 kB] 349s Get:68 http://ftpmaster.internal/ubuntu resolute/main arm64 libice6 arm64 2:1.1.1-1build1 [43.0 kB] 349s Get:69 http://ftpmaster.internal/ubuntu resolute/main arm64 libicu-dev arm64 78.2-1ubuntu1 [12.5 MB] 369s Get:70 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg-turbo8 arm64 2.1.5-4ubuntu3 [161 kB] 369s Get:71 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg-turbo8-dev arm64 2.1.5-4ubuntu3 [301 kB] 369s Get:72 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 369s Get:73 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 369s Get:74 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 369s Get:75 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-bootstrap all 3.4.1+dfsg-6 [129 kB] 369s Get:76 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-popper.js all 1.16.1+ds-6build1 [53.8 kB] 370s Get:77 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-bootstrap4 all 4.6.2+dfsg-1 [532 kB] 370s Get:78 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-d3 all 3.5.17-4build1 [136 kB] 370s Get:79 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 370s Get:80 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-highlight.js all 10.7.3+dfsg-2 [144 kB] 370s Get:81 http://ftpmaster.internal/ubuntu resolute/main arm64 libjs-jquery all 3.7.1+dfsg+~3.5.33-1build1 [321 kB] 370s Get:82 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2build1 [145 kB] 370s Get:83 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 370s Get:84 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-2 [3946 B] 370s Get:85 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 370s Get:86 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1build1 [251 kB] 370s Get:87 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-json all 0~20221030+~1.0.8-1build1 [20.6 kB] 370s Get:88 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 370s Get:89 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-prettify all 2015.12.04+dfsg-3 [41.4 kB] 370s Get:90 http://ftpmaster.internal/ubuntu resolute/universe arm64 libkpathsea6 arm64 2025.20250727.75242+ds-5build1 [65.4 kB] 370s Get:91 http://ftpmaster.internal/ubuntu resolute/main arm64 liblapack3 arm64 3.12.1-7ubuntu1 [2299 kB] 374s Get:92 http://ftpmaster.internal/ubuntu resolute/main arm64 liblapack-dev arm64 3.12.1-7ubuntu1 [4456 kB] 382s Get:93 http://ftpmaster.internal/ubuntu resolute/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu2 [174 kB] 382s Get:94 http://ftpmaster.internal/ubuntu resolute/main arm64 liblua5.4-0 arm64 5.4.8-1 [171 kB] 382s Get:95 http://ftpmaster.internal/ubuntu resolute/universe arm64 libmpfi0 arm64 1.5.4+ds-4build1 [36.4 kB] 382s Get:96 http://ftpmaster.internal/ubuntu resolute/main arm64 libncurses-dev arm64 6.6+20251231-1 [391 kB] 382s Get:97 http://ftpmaster.internal/ubuntu resolute/main arm64 libthai-data all 0.1.30-1 [155 kB] 382s Get:98 http://ftpmaster.internal/ubuntu resolute/main arm64 libthai0 arm64 0.1.30-1 [18.3 kB] 382s Get:99 http://ftpmaster.internal/ubuntu resolute/main arm64 libpango-1.0-0 arm64 1.57.0-1 [238 kB] 382s Get:100 http://ftpmaster.internal/ubuntu resolute/main arm64 libpangoft2-1.0-0 arm64 1.57.0-1 [51.5 kB] 382s Get:101 http://ftpmaster.internal/ubuntu resolute/main arm64 libpangocairo-1.0-0 arm64 1.57.0-1 [27.9 kB] 382s Get:102 http://ftpmaster.internal/ubuntu resolute/main arm64 libpaper2 arm64 2.2.5-0.3build1 [17.3 kB] 382s Get:103 http://ftpmaster.internal/ubuntu resolute/main arm64 libpaper-utils arm64 2.2.5-0.3build1 [15.4 kB] 382s Get:104 http://ftpmaster.internal/ubuntu resolute/main arm64 libpcre2-16-0 arm64 10.46-1 [225 kB] 382s Get:105 http://ftpmaster.internal/ubuntu resolute/main arm64 libpcre2-32-0 arm64 10.46-1 [213 kB] 382s Get:106 http://ftpmaster.internal/ubuntu resolute/main arm64 libpcre2-posix3 arm64 10.46-1 [7300 B] 382s Get:107 http://ftpmaster.internal/ubuntu resolute/main arm64 libpcre2-dev arm64 10.46-1 [772 kB] 384s Get:108 http://ftpmaster.internal/ubuntu resolute/main arm64 libpkgconf3 arm64 1.8.1-4build1 [33.7 kB] 384s Get:109 http://ftpmaster.internal/ubuntu resolute/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu2 [899 kB] 387s Get:110 http://ftpmaster.internal/ubuntu resolute/main arm64 libpng-dev arm64 1.6.54-1 [268 kB] 387s Get:111 http://ftpmaster.internal/ubuntu resolute/universe arm64 libpotrace0 arm64 1.16-2build2 [16.3 kB] 387s Get:112 http://ftpmaster.internal/ubuntu resolute/universe arm64 libptexenc1 arm64 2025.20250727.75242+ds-5build1 [46.2 kB] 387s Get:113 http://ftpmaster.internal/ubuntu resolute/main arm64 libreadline-dev arm64 8.3-3 [199 kB] 387s Get:114 http://ftpmaster.internal/ubuntu resolute/main arm64 libsharpyuv0 arm64 1.5.0-0.1build1 [16.7 kB] 387s Get:115 http://ftpmaster.internal/ubuntu resolute/main arm64 libsm6 arm64 2:1.2.6-1build1 [16.8 kB] 387s Get:116 http://ftpmaster.internal/ubuntu resolute/universe arm64 libsynctex2 arm64 2025.20250727.75242+ds-5build1 [61.4 kB] 387s Get:117 http://ftpmaster.internal/ubuntu resolute/main arm64 libtcl8.6 arm64 8.6.17+dfsg-1build1 [983 kB] 389s Get:118 http://ftpmaster.internal/ubuntu resolute/universe arm64 libteckit0 arm64 2.5.13+ds-1 [393 kB] 389s Get:119 http://ftpmaster.internal/ubuntu resolute/universe arm64 libtexlua53-5 arm64 2025.20250727.75242+ds-5build1 [122 kB] 389s Get:120 http://ftpmaster.internal/ubuntu resolute/main arm64 libjbig0 arm64 2.1-6.1ubuntu3 [29.2 kB] 389s Get:121 http://ftpmaster.internal/ubuntu resolute/main arm64 libwebp7 arm64 1.5.0-0.1build1 [205 kB] 389s Get:122 http://ftpmaster.internal/ubuntu resolute/main arm64 libtiff6 arm64 4.7.0-3ubuntu3 [196 kB] 389s Get:123 http://ftpmaster.internal/ubuntu resolute/main arm64 libxft2 arm64 2.3.6-1build2 [43.2 kB] 389s Get:124 http://ftpmaster.internal/ubuntu resolute/main arm64 libxss1 arm64 1:1.2.3-1build4 [7102 B] 389s Get:125 http://ftpmaster.internal/ubuntu resolute/main arm64 libtk8.6 arm64 8.6.17-1 [811 kB] 391s Get:126 http://ftpmaster.internal/ubuntu resolute/main arm64 libxt6t64 arm64 1:1.2.1-1.3 [168 kB] 391s Get:127 http://ftpmaster.internal/ubuntu resolute/main arm64 libxmu6 arm64 2:1.1.3-4 [47.6 kB] 391s Get:128 http://ftpmaster.internal/ubuntu resolute/main arm64 libxpm4 arm64 1:3.5.17-1build3 [35.5 kB] 391s Get:129 http://ftpmaster.internal/ubuntu resolute/main arm64 libxaw7 arm64 2:1.0.16-1build1 [183 kB] 391s Get:130 http://ftpmaster.internal/ubuntu resolute/main arm64 libxi6 arm64 2:1.8.2-2 [32.4 kB] 391s Get:131 http://ftpmaster.internal/ubuntu resolute/main arm64 libzstd-dev arm64 1.5.7+dfsg-3 [349 kB] 391s Get:132 http://ftpmaster.internal/ubuntu resolute/universe arm64 libzzip-0-13t64 arm64 0.13.78+dfsg.1-0.2 [30.7 kB] 391s Get:133 http://ftpmaster.internal/ubuntu resolute/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 391s Get:134 http://ftpmaster.internal/ubuntu resolute/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 391s Get:135 http://ftpmaster.internal/ubuntu resolute/universe arm64 node-normalize.css all 8.0.1-5.1 [10.4 kB] 391s Get:136 http://ftpmaster.internal/ubuntu resolute/universe arm64 pandoc-data all 3.1.11.1-3build1 [78.8 kB] 391s Get:137 http://ftpmaster.internal/ubuntu resolute/universe arm64 pandoc arm64 3.1.11.1+ds-4 [28.0 MB] 443s Get:138 http://ftpmaster.internal/ubuntu resolute/main arm64 zip arm64 3.0-15ubuntu3 [170 kB] 443s Get:139 http://ftpmaster.internal/ubuntu resolute/main arm64 unzip arm64 6.0-29ubuntu1 [176 kB] 443s Get:140 http://ftpmaster.internal/ubuntu resolute/main arm64 xdg-utils all 1.2.1-2ubuntu2 [66.1 kB] 443s Get:141 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-base-core arm64 4.5.2-1ubuntu2 [28.6 MB] 494s Get:142 http://ftpmaster.internal/ubuntu resolute/main arm64 liblzma-dev arm64 5.8.2-2 [180 kB] 494s Get:143 http://ftpmaster.internal/ubuntu resolute/main arm64 pkgconf-bin arm64 1.8.1-4build1 [21.7 kB] 494s Get:144 http://ftpmaster.internal/ubuntu resolute/main arm64 pkgconf arm64 1.8.1-4build1 [16.8 kB] 494s Get:145 http://ftpmaster.internal/ubuntu resolute/main arm64 libtirpc-dev arm64 1.3.6+ds-1 [202 kB] 494s Get:146 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-base-dev all 4.5.2-1ubuntu2 [1880 B] 494s Get:147 http://ftpmaster.internal/ubuntu resolute/universe arm64 pkg-r-autopkgtest all 20250812 [6158 B] 494s Get:148 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-biocgenerics all 0.52.0-2 [624 kB] 496s Get:149 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-biobase arm64 2.66.0-2 [2331 kB] 499s Get:150 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-all all 1.48.0-2 [11.5 MB] 519s Get:151 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-s4vectors arm64 0.44.0+dfsg-2 [2054 kB] 522s Get:152 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-iranges arm64 2.40.1-3 [2301 kB] 526s Get:153 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-dbi all 1.2.3-1build1 [855 kB] 527s Get:154 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-bit arm64 4.6.0+dfsg-1 [450 kB] 527s Get:155 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-bit64 arm64 4.6.0-1-4 [495 kB] 527s Get:156 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rlang arm64 1.1.5-3 [1706 kB] 530s Get:157 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-cli arm64 3.6.4-1 [1374 kB] 532s Get:158 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-glue arm64 1.8.0-1 [163 kB] 532s Get:159 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-lifecycle all 1.0.5+dfsg-1 [120 kB] 532s Get:160 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 535s Get:161 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-blob all 1.3.0-1 [54.1 kB] 535s Get:162 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-fastmap arm64 1.2.0-1 [70.6 kB] 535s Get:163 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-cachem arm64 1.1.0-1 [74.1 kB] 535s Get:164 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-memoise all 2.0.1-1build1 [54.5 kB] 535s Get:165 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-pkgconfig all 2.0.3-2build2 [20.4 kB] 535s Get:166 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-plogr all 0.2.0-3build2 [15.8 kB] 535s Get:167 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-cpp11 all 0.5.3-1 [242 kB] 535s Get:168 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rsqlite arm64 2.3.9-1 [1247 kB] 538s Get:169 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-curl arm64 7.0.0+dfsg-1 [202 kB] 538s Get:170 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-jsonlite arm64 1.9.1+dfsg-1 [445 kB] 538s Get:171 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-mime arm64 0.12-2 [35.8 kB] 538s Get:172 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-sys arm64 3.4.3-1 [45.2 kB] 538s Get:173 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-askpass arm64 1.2.1-1 [24.8 kB] 538s Get:174 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-openssl arm64 2.3.2+dfsg-1 [406 kB] 538s Get:175 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-r6 all 2.6.1-1 [101 kB] 538s Get:176 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 538s Get:177 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-png arm64 0.1-8-1build2 [40.1 kB] 538s Get:178 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB] 538s Get:179 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-xvector arm64 0.46.0-2 [618 kB] 540s Get:180 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-ucsc.utils all 1.2.0+ds-2 [77.2 kB] 540s Get:181 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB] 563s Get:182 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-genomeinfodb all 1.42.3+dfsg-1 [3887 kB] 569s Get:183 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-crayon all 1.5.3-1 [165 kB] 569s Get:184 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-biostrings arm64 2.74.1+dfsg-2 [13.3 MB] 591s Get:185 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-keggrest all 1.46.0+dfsg-3 [183 kB] 591s Get:186 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-annotationdbi all 1.68.0-2 [4857 kB] 601s Get:187 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-formatr all 1.14-2 [152 kB] 601s Get:188 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-lambda.r all 1.2.4-2build2 [118 kB] 601s Get:189 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-futile.options all 1.0.1-3build2 [20.5 kB] 601s Get:190 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-futile.logger all 1.4.3-4build2 [98.4 kB] 601s Get:191 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-snow all 1:0.4.4-2build1 [98.7 kB] 601s Get:192 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-codetools all 0.2-20-1build1 [91.1 kB] 601s Get:193 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-bh all 1.84.0-1 [5962 B] 601s Get:194 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-biocparallel arm64 1.40.0-2 [1333 kB] 603s Get:195 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-base64enc arm64 0.1-3-3build1 [28.5 kB] 603s Get:196 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-digest arm64 0.6.39-1 [196 kB] 604s Get:197 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-htmltools arm64 0.5.8.1-1 [373 kB] 604s Get:198 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-evaluate all 1.0.5-1 [117 kB] 604s Get:199 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-xfun arm64 0.55+dfsg-1 [587 kB] 605s Get:200 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 605s Get:201 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-yaml arm64 2.3.10-1 [108 kB] 605s Get:202 http://ftpmaster.internal/ubuntu resolute/main arm64 libjs-mathjax all 2.7.9+dfsg-1build1 [6017 kB] 615s Get:203 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-knitr all 1.51+dfsg-1 [847 kB] 617s Get:204 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-5 [13.7 kB] 617s Get:205 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-fs arm64 1.6.5+dfsg-1 [244 kB] 617s Get:206 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rappdirs arm64 0.3.3-1build1 [49.5 kB] 617s Get:207 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-sass arm64 0.4.9+dfsg-1 [957 kB] 619s Get:208 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-bslib all 0.9.0+dfsg-3build1 [4560 kB] 626s Get:209 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-fontawesome all 0.5.3-1 [1331 kB] 628s Get:210 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-tinytex all 0.58-1 [148 kB] 628s Get:211 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-modernizr all 3.13.0-0.1build1 [100 kB] 628s Get:212 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-littler arm64 0.3.22-1 [85.1 kB] 628s Get:213 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 628s Get:214 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rcpp arm64 1.1.0-1 [2011 kB] 631s Get:215 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-later arm64 1.4.1+dfsg-1 [141 kB] 631s Get:216 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 631s Get:217 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-promises arm64 1.3.2+dfsg-1 [290 kB] 631s Get:218 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-httpuv arm64 1.6.15+dfsg-1 [489 kB] 631s Get:219 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-xtable all 1:1.8-4-2build1 [691 kB] 632s Get:220 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 632s Get:221 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 632s Get:222 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-commonmark arm64 1.9.5-1 [130 kB] 632s Get:223 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 632s Get:224 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB] 639s Get:225 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rmarkdown all 2.30+dfsg-1 [1501 kB] 643s Get:226 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-bookdown all 0.42+dfsg-1 [1409 kB] 646s Get:227 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB] 646s Get:228 http://ftpmaster.internal/ubuntu resolute/universe arm64 tex-common all 6.20 [30.0 kB] 646s Get:229 http://ftpmaster.internal/ubuntu resolute/main arm64 t1utils arm64 1.41-4build4 [59.8 kB] 646s Get:230 http://ftpmaster.internal/ubuntu resolute/universe arm64 texlive-binaries arm64 2025.20250727.75242+ds-5build1 [8302 kB] 661s Get:231 http://ftpmaster.internal/ubuntu resolute/universe arm64 texlive-base all 2025.20260124-1 [22.8 MB] 703s Get:232 http://ftpmaster.internal/ubuntu resolute/universe arm64 texlive-latex-base all 2025.20260124-1 [1321 kB] 706s Get:233 http://ftpmaster.internal/ubuntu resolute/universe arm64 texlive-bibtex-extra all 2025.20260124-1 [80.6 MB] 859s Get:234 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-biocversion all 3.20.0-2 [11.1 kB] 859s Get:235 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-biocstyle all 2.34.0+dfsg-1 [451 kB] 859s Get:236 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-globaloptions all 0.1.3-1 [449 kB] 859s Get:237 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-shape all 1.4.6.1-1 [749 kB] 860s Get:238 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-colorspace arm64 2.1-1+dfsg-1 [1563 kB] 863s Get:239 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-circlize all 0.4.17+dfsg-1 [3288 kB] 871s Get:240 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rjson arm64 0.2.23-1 [104 kB] 871s Get:241 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-getoptlong all 1.1.0+dfsg-1 [419 kB] 877s Get:242 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-cluster arm64 2.1.8.2-1 [568 kB] 878s Get:243 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-clue arm64 0.3-66-1 [967 kB] 880s Get:244 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build2 [54.0 kB] 880s Get:245 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-matrixstats arm64 1.5.0-1 [496 kB] 880s Get:246 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-iterators all 1.0.14-1build1 [336 kB] 880s Get:247 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-foreach all 1.5.2-1build1 [124 kB] 880s Get:248 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-doparallel all 1.0.17-1build1 [189 kB] 880s Get:249 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-complexheatmap all 2.22.0+dfsg-2 [2973 kB] 885s Get:250 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-consensusclusterplus all 1.70.0-2 [447 kB] 885s Get:251 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-backports arm64 1.5.0-2 [121 kB] 885s Get:252 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-generics all 0.1.4-1 [84.0 kB] 885s Get:253 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 885s Get:254 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-pillar all 1.11.1+dfsg-1 [456 kB] 885s Get:255 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-fansi arm64 1.0.6-2 [627 kB] 887s Get:256 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-3 [420 kB] 887s Get:257 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-tidyselect arm64 1.2.1+dfsg-1 [222 kB] 887s Get:258 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-dplyr arm64 1.1.4-4 [1534 kB] 891s Get:259 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-purrr arm64 1.0.4-1 [552 kB] 892s Get:260 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-stringi arm64 1.8.4-1build2 [901 kB] 893s Get:261 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB] 893s Get:262 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-tidyr arm64 1.3.1-1 [1154 kB] 895s Get:263 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-broom all 1.0.12+dfsg-1 [1708 kB] 898s Get:264 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-gtable all 0.3.6+dfsg-1 [199 kB] 898s Get:265 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-isoband arm64 0.2.7-1 [1481 kB] 901s Get:266 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-s7 arm64 0.2.0-1 [329 kB] 901s Get:267 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-farver arm64 2.1.2-1 [1344 kB] 903s Get:268 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-labeling all 0.4.3-1 [62.1 kB] 903s Get:269 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-viridislite all 0.4.3-1 [1088 kB] 906s Get:270 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-scales all 1.4.0-1 [725 kB] 908s Get:271 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 r-cran-ggplot2 all 4.0.2+dfsg-1 [4941 kB] 917s Get:272 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-cowplot all 1.1.3+dfsg-1 [614 kB] 918s Get:273 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-gridextra all 2.3-3build2 [1032 kB] 919s Get:274 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-viridis all 0.6.5-1 [2770 kB] 924s Get:275 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-dendextend all 1.19.1+dfsg-1 [1003 kB] 926s Get:276 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-genomicranges arm64 1.58.0+dfsg-2 [2083 kB] 930s Get:277 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-matrixgenerics all 1.18.1-1 [450 kB] 930s Get:278 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-lattice arm64 0.22-7-1 [1365 kB] 932s Get:279 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-matrix arm64 1.7-4-1 [4146 kB] 941s Get:280 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-abind all 1.4-8-1build1 [67.0 kB] 941s Get:281 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-s4arrays arm64 1.6.0+dfsg-2 [698 kB] 942s Get:282 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-sparsearray arm64 1.6.2+dfsg-2 [1369 kB] 945s Get:283 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-delayedarray arm64 0.32.0+dfsg-2 [2064 kB] 949s Get:284 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-summarizedexperiment all 1.36.0+dfsg-2 [1109 kB] 951s Get:285 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-locfit arm64 1.5-9.12-1 [514 kB] 951s Get:286 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rcpparmadillo arm64 15.2.3-1-1 [916 kB] 953s Get:287 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-deseq2 arm64 1.46.0+dfsg-2 [1237 kB] 957s Get:288 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-statmod arm64 1.5.0-1 [294 kB] 957s Get:289 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-limma arm64 3.62.2+dfsg-1 [1968 kB] 961s Get:290 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-edger arm64 4.4.2+dfsg-1 [1114 kB] 963s Get:291 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-mass arm64 7.3-65-1 [1109 kB] 965s Get:292 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-ggdendro all 0.2.0+dfsg-1 [173 kB] 965s Get:293 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-ggrepel arm64 0.9.6-1 [264 kB] 965s Get:294 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-logging all 0.10-108-2build2 [169 kB] 965s Get:295 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-mnormt arm64 2.1.2-1 [174 kB] 965s Get:296 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-nlme arm64 3.1.168-1 [2310 kB] 970s Get:297 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-gparotation all 2025.3-1-1 [614 kB] 971s Get:298 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-psych all 2.4.12-1 [3563 kB] 977s Get:299 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-plyr arm64 1.8.9-1 [831 kB] 979s Get:300 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-reshape all 0.8.10-1 [171 kB] 979s Get:301 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-degreport all 1.42.0+dfsg-2 [1790 kB] 982s Get:302 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-brio arm64 1.1.5-1 [39.1 kB] 982s Get:303 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-ps arm64 1.9.0-1 [407 kB] 982s Get:304 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-processx arm64 3.8.6-1 [363 kB] 982s Get:305 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-callr all 3.7.6-1 [458 kB] 982s Get:306 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-desc all 1.4.3-1 [359 kB] 982s Get:307 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-diffobj arm64 0.3.5-1build1 [1154 kB] 986s Get:308 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-pheatmap all 1.0.13-1 [79.6 kB] 986s Get:309 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-pkgbuild all 1.4.8-1 [219 kB] 986s Get:310 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rprojroot all 2.1.1-1 [131 kB] 986s Get:311 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-pkgload all 1.4.1-1 [252 kB] 986s Get:312 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-praise all 1.0.0-4build2 [20.9 kB] 986s Get:313 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-waldo all 0.6.2-1 [153 kB] 986s Get:314 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-testthat arm64 3.2.3-1 [1644 kB] 994s Preconfiguring packages ... 994s Fetched 471 MB in 13min 45s (571 kB/s) 994s Selecting previously unselected package libc-dev-bin. 994s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 136600 files and directories currently installed.) 994s Preparing to unpack .../000-libc-dev-bin_2.42-2ubuntu4_arm64.deb ... 994s Unpacking libc-dev-bin (2.42-2ubuntu4) ... 994s Selecting previously unselected package linux-libc-dev:arm64. 994s Preparing to unpack .../001-linux-libc-dev_6.19.0-3.3_arm64.deb ... 994s Unpacking linux-libc-dev:arm64 (6.19.0-3.3) ... 994s Selecting previously unselected package libcrypt-dev:arm64. 994s Preparing to unpack .../002-libcrypt-dev_1%3a4.5.1-1_arm64.deb ... 994s Unpacking libcrypt-dev:arm64 (1:4.5.1-1) ... 994s Selecting previously unselected package rpcsvc-proto. 994s Preparing to unpack .../003-rpcsvc-proto_1.4.3-1build1_arm64.deb ... 994s Unpacking rpcsvc-proto (1.4.3-1build1) ... 994s Selecting previously unselected package libc6-dev:arm64. 994s Preparing to unpack .../004-libc6-dev_2.42-2ubuntu4_arm64.deb ... 994s Unpacking libc6-dev:arm64 (2.42-2ubuntu4) ... 995s Selecting previously unselected package libisl23:arm64. 995s Preparing to unpack .../005-libisl23_0.27-1build1_arm64.deb ... 995s Unpacking libisl23:arm64 (0.27-1build1) ... 995s Selecting previously unselected package libmpc3:arm64. 995s Preparing to unpack .../006-libmpc3_1.3.1-2_arm64.deb ... 995s Unpacking libmpc3:arm64 (1.3.1-2) ... 995s Selecting previously unselected package cpp-15-aarch64-linux-gnu. 995s Preparing to unpack .../007-cpp-15-aarch64-linux-gnu_15.2.0-12ubuntu1_arm64.deb ... 995s Unpacking cpp-15-aarch64-linux-gnu (15.2.0-12ubuntu1) ... 995s Selecting previously unselected package cpp-15. 995s Preparing to unpack .../008-cpp-15_15.2.0-12ubuntu1_arm64.deb ... 995s Unpacking cpp-15 (15.2.0-12ubuntu1) ... 995s Selecting previously unselected package cpp-aarch64-linux-gnu. 995s Preparing to unpack .../009-cpp-aarch64-linux-gnu_4%3a15.2.0-4ubuntu1_arm64.deb ... 995s Unpacking cpp-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 995s Selecting previously unselected package cpp. 995s Preparing to unpack .../010-cpp_4%3a15.2.0-4ubuntu1_arm64.deb ... 995s Unpacking cpp (4:15.2.0-4ubuntu1) ... 995s Selecting previously unselected package libcc1-0:arm64. 995s Preparing to unpack .../011-libcc1-0_15.2.0-12ubuntu1_arm64.deb ... 995s Unpacking libcc1-0:arm64 (15.2.0-12ubuntu1) ... 995s Selecting previously unselected package libgomp1:arm64. 995s Preparing to unpack .../012-libgomp1_15.2.0-12ubuntu1_arm64.deb ... 995s Unpacking libgomp1:arm64 (15.2.0-12ubuntu1) ... 995s Selecting previously unselected package libitm1:arm64. 995s Preparing to unpack .../013-libitm1_15.2.0-12ubuntu1_arm64.deb ... 995s Unpacking libitm1:arm64 (15.2.0-12ubuntu1) ... 995s Selecting previously unselected package libasan8:arm64. 995s Preparing to unpack .../014-libasan8_15.2.0-12ubuntu1_arm64.deb ... 995s Unpacking libasan8:arm64 (15.2.0-12ubuntu1) ... 995s Selecting previously unselected package liblsan0:arm64. 995s Preparing to unpack .../015-liblsan0_15.2.0-12ubuntu1_arm64.deb ... 995s Unpacking liblsan0:arm64 (15.2.0-12ubuntu1) ... 995s Selecting previously unselected package libtsan2:arm64. 995s Preparing to unpack .../016-libtsan2_15.2.0-12ubuntu1_arm64.deb ... 995s Unpacking libtsan2:arm64 (15.2.0-12ubuntu1) ... 995s Selecting previously unselected package libubsan1:arm64. 995s Preparing to unpack .../017-libubsan1_15.2.0-12ubuntu1_arm64.deb ... 995s Unpacking libubsan1:arm64 (15.2.0-12ubuntu1) ... 995s Selecting previously unselected package libhwasan0:arm64. 995s Preparing to unpack .../018-libhwasan0_15.2.0-12ubuntu1_arm64.deb ... 995s Unpacking libhwasan0:arm64 (15.2.0-12ubuntu1) ... 995s Selecting previously unselected package libgcc-15-dev:arm64. 995s Preparing to unpack .../019-libgcc-15-dev_15.2.0-12ubuntu1_arm64.deb ... 995s Unpacking libgcc-15-dev:arm64 (15.2.0-12ubuntu1) ... 996s Selecting previously unselected package gcc-15-aarch64-linux-gnu. 996s Preparing to unpack .../020-gcc-15-aarch64-linux-gnu_15.2.0-12ubuntu1_arm64.deb ... 996s Unpacking gcc-15-aarch64-linux-gnu (15.2.0-12ubuntu1) ... 996s Selecting previously unselected package gcc-15. 996s Preparing to unpack .../021-gcc-15_15.2.0-12ubuntu1_arm64.deb ... 996s Unpacking gcc-15 (15.2.0-12ubuntu1) ... 996s Selecting previously unselected package gcc-aarch64-linux-gnu. 996s Preparing to unpack .../022-gcc-aarch64-linux-gnu_4%3a15.2.0-4ubuntu1_arm64.deb ... 996s Unpacking gcc-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 996s Selecting previously unselected package gcc. 996s Preparing to unpack .../023-gcc_4%3a15.2.0-4ubuntu1_arm64.deb ... 996s Unpacking gcc (4:15.2.0-4ubuntu1) ... 996s Selecting previously unselected package libstdc++-15-dev:arm64. 996s Preparing to unpack .../024-libstdc++-15-dev_15.2.0-12ubuntu1_arm64.deb ... 996s Unpacking libstdc++-15-dev:arm64 (15.2.0-12ubuntu1) ... 996s Selecting previously unselected package g++-15-aarch64-linux-gnu. 996s Preparing to unpack .../025-g++-15-aarch64-linux-gnu_15.2.0-12ubuntu1_arm64.deb ... 996s Unpacking g++-15-aarch64-linux-gnu (15.2.0-12ubuntu1) ... 997s Selecting previously unselected package g++-15. 997s Preparing to unpack .../026-g++-15_15.2.0-12ubuntu1_arm64.deb ... 997s Unpacking g++-15 (15.2.0-12ubuntu1) ... 997s Selecting previously unselected package g++-aarch64-linux-gnu. 997s Preparing to unpack .../027-g++-aarch64-linux-gnu_4%3a15.2.0-4ubuntu1_arm64.deb ... 997s Unpacking g++-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 997s Selecting previously unselected package g++. 997s Preparing to unpack .../028-g++_4%3a15.2.0-4ubuntu1_arm64.deb ... 997s Unpacking g++ (4:15.2.0-4ubuntu1) ... 997s Selecting previously unselected package build-essential. 997s Preparing to unpack .../029-build-essential_12.12ubuntu2_arm64.deb ... 997s Unpacking build-essential (12.12ubuntu2) ... 997s Selecting previously unselected package dctrl-tools. 997s Preparing to unpack .../030-dctrl-tools_2.24-3build4_arm64.deb ... 997s Unpacking dctrl-tools (2.24-3build4) ... 997s Selecting previously unselected package fonts-dejavu-mono. 997s Preparing to unpack .../031-fonts-dejavu-mono_2.37-8build1_all.deb ... 997s Unpacking fonts-dejavu-mono (2.37-8build1) ... 997s Selecting previously unselected package fonts-dejavu-core. 997s Preparing to unpack .../032-fonts-dejavu-core_2.37-8build1_all.deb ... 997s Unpacking fonts-dejavu-core (2.37-8build1) ... 997s Selecting previously unselected package fontconfig-config. 997s Preparing to unpack .../033-fontconfig-config_2.17.1-3ubuntu1_arm64.deb ... 997s Unpacking fontconfig-config (2.17.1-3ubuntu1) ... 997s Selecting previously unselected package libfontconfig1:arm64. 997s Preparing to unpack .../034-libfontconfig1_2.17.1-3ubuntu1_arm64.deb ... 997s Unpacking libfontconfig1:arm64 (2.17.1-3ubuntu1) ... 997s Selecting previously unselected package fontconfig. 997s Preparing to unpack .../035-fontconfig_2.17.1-3ubuntu1_arm64.deb ... 997s Unpacking fontconfig (2.17.1-3ubuntu1) ... 997s Selecting previously unselected package fonts-font-awesome. 997s Preparing to unpack .../036-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1build1_all.deb ... 997s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1build1) ... 997s Selecting previously unselected package fonts-glyphicons-halflings. 997s Preparing to unpack .../037-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-6_all.deb ... 997s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-6) ... 997s Selecting previously unselected package fonts-lmodern. 997s Preparing to unpack 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previously unselected package libjs-jquery-selectize.js. 1002s Preparing to unpack .../084-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 1002s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 1002s Selecting previously unselected package libjs-jquery-ui. 1002s Preparing to unpack .../085-libjs-jquery-ui_1.13.2+dfsg-1build1_all.deb ... 1002s Unpacking libjs-jquery-ui (1.13.2+dfsg-1build1) ... 1002s Selecting previously unselected package libjs-json. 1002s Preparing to unpack .../086-libjs-json_0~20221030+~1.0.8-1build1_all.deb ... 1002s Unpacking libjs-json (0~20221030+~1.0.8-1build1) ... 1002s Selecting previously unselected package libjs-lunr. 1002s Preparing to unpack .../087-libjs-lunr_2.3.9~dfsg-2_all.deb ... 1002s Unpacking libjs-lunr (2.3.9~dfsg-2) ... 1002s Selecting previously unselected package libjs-prettify. 1002s Preparing to unpack .../088-libjs-prettify_2015.12.04+dfsg-3_all.deb ... 1002s Unpacking libjs-prettify (2015.12.04+dfsg-3) ... 1002s Selecting previously unselected package libkpathsea6:arm64. 1002s Preparing to unpack .../089-libkpathsea6_2025.20250727.75242+ds-5build1_arm64.deb ... 1002s Unpacking libkpathsea6:arm64 (2025.20250727.75242+ds-5build1) ... 1002s Selecting previously unselected package liblapack3:arm64. 1002s Preparing to unpack .../090-liblapack3_3.12.1-7ubuntu1_arm64.deb ... 1002s Unpacking liblapack3:arm64 (3.12.1-7ubuntu1) ... 1002s Selecting previously unselected package liblapack-dev:arm64. 1002s Preparing to unpack .../091-liblapack-dev_3.12.1-7ubuntu1_arm64.deb ... 1002s Unpacking liblapack-dev:arm64 (3.12.1-7ubuntu1) ... 1002s Selecting previously unselected package liblerc4:arm64. 1002s Preparing to unpack .../092-liblerc4_4.0.0+ds-5ubuntu2_arm64.deb ... 1002s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu2) ... 1002s Selecting previously unselected package liblua5.4-0:arm64. 1002s Preparing to unpack .../093-liblua5.4-0_5.4.8-1_arm64.deb ... 1002s Unpacking liblua5.4-0:arm64 (5.4.8-1) ... 1002s Selecting previously unselected package libmpfi0:arm64. 1002s Preparing to unpack .../094-libmpfi0_1.5.4+ds-4build1_arm64.deb ... 1002s Unpacking libmpfi0:arm64 (1.5.4+ds-4build1) ... 1002s Selecting previously unselected package libncurses-dev:arm64. 1002s Preparing to unpack .../095-libncurses-dev_6.6+20251231-1_arm64.deb ... 1002s Unpacking libncurses-dev:arm64 (6.6+20251231-1) ... 1002s Selecting previously unselected package libthai-data. 1002s Preparing to unpack .../096-libthai-data_0.1.30-1_all.deb ... 1002s Unpacking libthai-data (0.1.30-1) ... 1002s Selecting previously unselected package libthai0:arm64. 1002s Preparing to unpack .../097-libthai0_0.1.30-1_arm64.deb ... 1002s Unpacking libthai0:arm64 (0.1.30-1) ... 1002s Selecting previously unselected package libpango-1.0-0:arm64. 1002s Preparing to unpack .../098-libpango-1.0-0_1.57.0-1_arm64.deb ... 1002s Unpacking libpango-1.0-0:arm64 (1.57.0-1) ... 1002s Selecting previously unselected package libpangoft2-1.0-0:arm64. 1002s 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1004s Selecting previously unselected package libzstd-dev:arm64. 1004s Preparing to unpack .../130-libzstd-dev_1.5.7+dfsg-3_arm64.deb ... 1004s Unpacking libzstd-dev:arm64 (1.5.7+dfsg-3) ... 1004s Selecting previously unselected package libzzip-0-13t64:arm64. 1004s Preparing to unpack .../131-libzzip-0-13t64_0.13.78+dfsg.1-0.2_arm64.deb ... 1004s Unpacking libzzip-0-13t64:arm64 (0.13.78+dfsg.1-0.2) ... 1004s Selecting previously unselected package node-bootstrap-sass. 1004s Preparing to unpack .../132-node-bootstrap-sass_3.4.3-2_all.deb ... 1004s Unpacking node-bootstrap-sass (3.4.3-2) ... 1004s Selecting previously unselected package node-html5shiv. 1004s Preparing to unpack .../133-node-html5shiv_3.7.3+dfsg-5_all.deb ... 1004s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 1004s Selecting previously unselected package node-normalize.css. 1004s Preparing to unpack .../134-node-normalize.css_8.0.1-5.1_all.deb ... 1004s Unpacking node-normalize.css (8.0.1-5.1) ... 1004s Selecting previously unselected package pandoc-data. 1004s Preparing to unpack .../135-pandoc-data_3.1.11.1-3build1_all.deb ... 1004s Unpacking pandoc-data (3.1.11.1-3build1) ... 1004s Selecting previously unselected package pandoc. 1004s Preparing to unpack .../136-pandoc_3.1.11.1+ds-4_arm64.deb ... 1004s Unpacking pandoc (3.1.11.1+ds-4) ... 1005s Selecting previously unselected package zip. 1005s Preparing to unpack .../137-zip_3.0-15ubuntu3_arm64.deb ... 1005s Unpacking zip (3.0-15ubuntu3) ... 1005s Selecting previously unselected package unzip. 1005s Preparing to unpack .../138-unzip_6.0-29ubuntu1_arm64.deb ... 1005s Unpacking unzip (6.0-29ubuntu1) ... 1005s Selecting previously unselected package xdg-utils. 1005s Preparing to unpack .../139-xdg-utils_1.2.1-2ubuntu2_all.deb ... 1005s Unpacking xdg-utils (1.2.1-2ubuntu2) ... 1005s Selecting previously unselected package r-base-core. 1005s Preparing to unpack .../140-r-base-core_4.5.2-1ubuntu2_arm64.deb ... 1005s Unpacking r-base-core (4.5.2-1ubuntu2) ... 1006s Selecting previously unselected package liblzma-dev:arm64. 1006s Preparing to unpack .../141-liblzma-dev_5.8.2-2_arm64.deb ... 1006s Unpacking liblzma-dev:arm64 (5.8.2-2) ... 1006s Selecting previously unselected package pkgconf-bin. 1006s Preparing to unpack .../142-pkgconf-bin_1.8.1-4build1_arm64.deb ... 1006s Unpacking pkgconf-bin (1.8.1-4build1) ... 1006s Selecting previously unselected package pkgconf:arm64. 1006s Preparing to unpack .../143-pkgconf_1.8.1-4build1_arm64.deb ... 1006s Unpacking pkgconf:arm64 (1.8.1-4build1) ... 1006s Selecting previously unselected package libtirpc-dev:arm64. 1006s Preparing to unpack .../144-libtirpc-dev_1.3.6+ds-1_arm64.deb ... 1006s Unpacking libtirpc-dev:arm64 (1.3.6+ds-1) ... 1006s Selecting previously unselected package r-base-dev. 1006s Preparing to unpack .../145-r-base-dev_4.5.2-1ubuntu2_all.deb ... 1006s Unpacking r-base-dev (4.5.2-1ubuntu2) ... 1006s Selecting previously unselected package pkg-r-autopkgtest. 1006s Preparing to unpack .../146-pkg-r-autopkgtest_20250812_all.deb ... 1006s Unpacking pkg-r-autopkgtest (20250812) ... 1006s Selecting previously unselected package r-bioc-biocgenerics. 1006s Preparing to unpack .../147-r-bioc-biocgenerics_0.52.0-2_all.deb ... 1006s Unpacking r-bioc-biocgenerics (0.52.0-2) ... 1006s Selecting previously unselected package r-bioc-biobase. 1006s Preparing to unpack .../148-r-bioc-biobase_2.66.0-2_arm64.deb ... 1006s Unpacking r-bioc-biobase (2.66.0-2) ... 1006s Selecting previously unselected package r-bioc-all. 1006s Preparing to unpack .../149-r-bioc-all_1.48.0-2_all.deb ... 1006s Unpacking r-bioc-all (1.48.0-2) ... 1006s Selecting previously unselected package r-bioc-s4vectors. 1006s Preparing to unpack .../150-r-bioc-s4vectors_0.44.0+dfsg-2_arm64.deb ... 1006s Unpacking r-bioc-s4vectors (0.44.0+dfsg-2) ... 1006s Selecting previously unselected package r-bioc-iranges. 1006s Preparing to unpack .../151-r-bioc-iranges_2.40.1-3_arm64.deb ... 1006s Unpacking r-bioc-iranges (2.40.1-3) ... 1006s Selecting previously unselected package r-cran-dbi. 1006s Preparing to unpack .../152-r-cran-dbi_1.2.3-1build1_all.deb ... 1006s Unpacking r-cran-dbi (1.2.3-1build1) ... 1006s Selecting previously unselected package r-cran-bit. 1006s Preparing to unpack .../153-r-cran-bit_4.6.0+dfsg-1_arm64.deb ... 1006s Unpacking r-cran-bit (4.6.0+dfsg-1) ... 1006s Selecting previously unselected package r-cran-bit64. 1006s Preparing to unpack .../154-r-cran-bit64_4.6.0-1-4_arm64.deb ... 1006s Unpacking r-cran-bit64 (4.6.0-1-4) ... 1007s Selecting previously unselected package r-cran-rlang. 1007s Preparing to unpack .../155-r-cran-rlang_1.1.5-3_arm64.deb ... 1007s Unpacking r-cran-rlang (1.1.5-3) ... 1007s Selecting previously unselected package r-cran-cli. 1007s Preparing to unpack .../156-r-cran-cli_3.6.4-1_arm64.deb ... 1007s Unpacking r-cran-cli (3.6.4-1) ... 1007s Selecting previously unselected package r-cran-glue. 1007s Preparing to unpack .../157-r-cran-glue_1.8.0-1_arm64.deb ... 1007s Unpacking r-cran-glue (1.8.0-1) ... 1007s Selecting previously unselected package r-cran-lifecycle. 1007s Preparing to unpack .../158-r-cran-lifecycle_1.0.5+dfsg-1_all.deb ... 1007s Unpacking r-cran-lifecycle (1.0.5+dfsg-1) ... 1007s Selecting previously unselected package r-cran-vctrs. 1007s Preparing to unpack .../159-r-cran-vctrs_0.6.5-1_arm64.deb ... 1007s Unpacking r-cran-vctrs (0.6.5-1) ... 1007s Selecting previously unselected package r-cran-blob. 1007s Preparing to unpack .../160-r-cran-blob_1.3.0-1_all.deb ... 1007s Unpacking r-cran-blob (1.3.0-1) ... 1007s Selecting previously unselected package r-cran-fastmap. 1007s Preparing to unpack .../161-r-cran-fastmap_1.2.0-1_arm64.deb ... 1007s Unpacking r-cran-fastmap (1.2.0-1) ... 1007s Selecting previously unselected package r-cran-cachem. 1007s Preparing to unpack .../162-r-cran-cachem_1.1.0-1_arm64.deb ... 1007s Unpacking r-cran-cachem (1.1.0-1) ... 1007s Selecting previously unselected package r-cran-memoise. 1007s Preparing to unpack .../163-r-cran-memoise_2.0.1-1build1_all.deb ... 1007s Unpacking r-cran-memoise (2.0.1-1build1) ... 1007s Selecting previously unselected package r-cran-pkgconfig. 1007s Preparing to unpack .../164-r-cran-pkgconfig_2.0.3-2build2_all.deb ... 1007s Unpacking r-cran-pkgconfig (2.0.3-2build2) ... 1007s Selecting previously unselected package r-cran-plogr. 1007s Preparing to unpack .../165-r-cran-plogr_0.2.0-3build2_all.deb ... 1007s Unpacking r-cran-plogr (0.2.0-3build2) ... 1007s Selecting previously unselected package r-cran-cpp11. 1007s Preparing to unpack .../166-r-cran-cpp11_0.5.3-1_all.deb ... 1007s Unpacking r-cran-cpp11 (0.5.3-1) ... 1007s Selecting previously unselected package r-cran-rsqlite. 1007s Preparing to unpack .../167-r-cran-rsqlite_2.3.9-1_arm64.deb ... 1007s Unpacking r-cran-rsqlite (2.3.9-1) ... 1007s Selecting previously unselected package r-cran-curl. 1007s Preparing to unpack .../168-r-cran-curl_7.0.0+dfsg-1_arm64.deb ... 1007s Unpacking r-cran-curl (7.0.0+dfsg-1) ... 1007s Selecting previously unselected package r-cran-jsonlite. 1007s Preparing to unpack .../169-r-cran-jsonlite_1.9.1+dfsg-1_arm64.deb ... 1007s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ... 1007s Selecting previously unselected package r-cran-mime. 1007s Preparing to unpack .../170-r-cran-mime_0.12-2_arm64.deb ... 1007s Unpacking r-cran-mime (0.12-2) ... 1007s Selecting previously unselected package r-cran-sys. 1007s Preparing to unpack .../171-r-cran-sys_3.4.3-1_arm64.deb ... 1007s Unpacking r-cran-sys (3.4.3-1) ... 1007s Selecting previously unselected package r-cran-askpass. 1007s Preparing to unpack .../172-r-cran-askpass_1.2.1-1_arm64.deb ... 1007s Unpacking r-cran-askpass (1.2.1-1) ... 1007s Selecting previously unselected package r-cran-openssl. 1008s Preparing to unpack .../173-r-cran-openssl_2.3.2+dfsg-1_arm64.deb ... 1008s Unpacking r-cran-openssl (2.3.2+dfsg-1) ... 1008s Selecting previously unselected package r-cran-r6. 1008s Preparing to unpack .../174-r-cran-r6_2.6.1-1_all.deb ... 1008s Unpacking r-cran-r6 (2.6.1-1) ... 1008s Selecting previously unselected package r-cran-httr. 1008s Preparing to unpack .../175-r-cran-httr_1.4.7+dfsg-1_all.deb ... 1008s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 1008s Selecting previously unselected package r-cran-png. 1008s Preparing to unpack .../176-r-cran-png_0.1-8-1build2_arm64.deb ... 1008s Unpacking r-cran-png (0.1-8-1build2) ... 1008s Selecting previously unselected package r-bioc-zlibbioc. 1008s Preparing to unpack .../177-r-bioc-zlibbioc_1.52.0+dfsg-2_all.deb ... 1008s Unpacking r-bioc-zlibbioc (1.52.0+dfsg-2) ... 1008s Selecting previously unselected package r-bioc-xvector. 1008s Preparing to unpack .../178-r-bioc-xvector_0.46.0-2_arm64.deb ... 1008s Unpacking r-bioc-xvector (0.46.0-2) ... 1008s Selecting previously unselected package r-bioc-ucsc.utils. 1008s Preparing to unpack .../179-r-bioc-ucsc.utils_1.2.0+ds-2_all.deb ... 1008s Unpacking r-bioc-ucsc.utils (1.2.0+ds-2) ... 1008s Selecting previously unselected package r-bioc-genomeinfodbdata. 1008s Preparing to unpack .../180-r-bioc-genomeinfodbdata_1.2.13-2_all.deb ... 1008s Unpacking r-bioc-genomeinfodbdata (1.2.13-2) ... 1008s Selecting previously unselected package r-bioc-genomeinfodb. 1008s Preparing to unpack .../181-r-bioc-genomeinfodb_1.42.3+dfsg-1_all.deb ... 1008s Unpacking r-bioc-genomeinfodb (1.42.3+dfsg-1) ... 1008s Selecting previously unselected package r-cran-crayon. 1008s Preparing to unpack .../182-r-cran-crayon_1.5.3-1_all.deb ... 1008s Unpacking r-cran-crayon (1.5.3-1) ... 1008s Selecting previously unselected package r-bioc-biostrings. 1008s Preparing to unpack .../183-r-bioc-biostrings_2.74.1+dfsg-2_arm64.deb ... 1008s Unpacking r-bioc-biostrings (2.74.1+dfsg-2) ... 1008s Selecting previously unselected package r-bioc-keggrest. 1008s Preparing to unpack .../184-r-bioc-keggrest_1.46.0+dfsg-3_all.deb ... 1008s Unpacking r-bioc-keggrest (1.46.0+dfsg-3) ... 1008s Selecting previously unselected package r-bioc-annotationdbi. 1008s Preparing to unpack .../185-r-bioc-annotationdbi_1.68.0-2_all.deb ... 1008s Unpacking r-bioc-annotationdbi (1.68.0-2) ... 1008s Selecting previously unselected package r-cran-formatr. 1008s Preparing to unpack .../186-r-cran-formatr_1.14-2_all.deb ... 1008s Unpacking r-cran-formatr (1.14-2) ... 1008s Selecting previously unselected package r-cran-lambda.r. 1008s Preparing to unpack .../187-r-cran-lambda.r_1.2.4-2build2_all.deb ... 1008s Unpacking r-cran-lambda.r (1.2.4-2build2) ... 1008s Selecting previously unselected package r-cran-futile.options. 1008s Preparing to unpack .../188-r-cran-futile.options_1.0.1-3build2_all.deb ... 1008s Unpacking r-cran-futile.options (1.0.1-3build2) ... 1008s Selecting previously unselected package r-cran-futile.logger. 1008s Preparing to unpack .../189-r-cran-futile.logger_1.4.3-4build2_all.deb ... 1008s Unpacking r-cran-futile.logger (1.4.3-4build2) ... 1008s Selecting previously unselected package r-cran-snow. 1009s Preparing to unpack .../190-r-cran-snow_1%3a0.4.4-2build1_all.deb ... 1009s Unpacking r-cran-snow (1:0.4.4-2build1) ... 1009s Selecting previously unselected package r-cran-codetools. 1009s Preparing to unpack .../191-r-cran-codetools_0.2-20-1build1_all.deb ... 1009s Unpacking r-cran-codetools (0.2-20-1build1) ... 1009s Selecting previously unselected package r-cran-bh. 1009s Preparing to unpack .../192-r-cran-bh_1.84.0-1_all.deb ... 1009s Unpacking r-cran-bh (1.84.0-1) ... 1009s Selecting previously unselected package r-bioc-biocparallel. 1009s Preparing to unpack .../193-r-bioc-biocparallel_1.40.0-2_arm64.deb ... 1009s Unpacking r-bioc-biocparallel (1.40.0-2) ... 1009s Selecting previously unselected package r-cran-base64enc. 1009s Preparing to unpack .../194-r-cran-base64enc_0.1-3-3build1_arm64.deb ... 1009s Unpacking r-cran-base64enc (0.1-3-3build1) ... 1009s Selecting previously unselected package r-cran-digest. 1009s Preparing to unpack .../195-r-cran-digest_0.6.39-1_arm64.deb ... 1009s Unpacking r-cran-digest (0.6.39-1) ... 1009s Selecting previously unselected package r-cran-htmltools. 1009s Preparing to unpack .../196-r-cran-htmltools_0.5.8.1-1_arm64.deb ... 1009s Unpacking r-cran-htmltools (0.5.8.1-1) ... 1009s Selecting previously unselected package r-cran-evaluate. 1009s Preparing to unpack .../197-r-cran-evaluate_1.0.5-1_all.deb ... 1009s Unpacking r-cran-evaluate (1.0.5-1) ... 1009s Selecting previously unselected package r-cran-xfun. 1009s Preparing to unpack .../198-r-cran-xfun_0.55+dfsg-1_arm64.deb ... 1009s Unpacking r-cran-xfun (0.55+dfsg-1) ... 1009s Selecting previously unselected package r-cran-highr. 1009s Preparing to unpack .../199-r-cran-highr_0.11+dfsg-1_all.deb ... 1009s Unpacking r-cran-highr (0.11+dfsg-1) ... 1009s Selecting previously unselected package r-cran-yaml. 1009s Preparing to unpack .../200-r-cran-yaml_2.3.10-1_arm64.deb ... 1009s Unpacking r-cran-yaml (2.3.10-1) ... 1009s Selecting previously unselected package libjs-mathjax. 1009s Preparing to unpack .../201-libjs-mathjax_2.7.9+dfsg-1build1_all.deb ... 1009s Unpacking libjs-mathjax (2.7.9+dfsg-1build1) ... 1010s Selecting previously unselected package r-cran-knitr. 1010s Preparing to unpack .../202-r-cran-knitr_1.51+dfsg-1_all.deb ... 1010s Unpacking r-cran-knitr (1.51+dfsg-1) ... 1010s Selecting previously unselected package r-cran-jquerylib. 1010s Preparing to unpack .../203-r-cran-jquerylib_0.1.4+dfsg-5_all.deb ... 1010s Unpacking r-cran-jquerylib (0.1.4+dfsg-5) ... 1010s Selecting previously unselected package r-cran-fs. 1010s Preparing to unpack .../204-r-cran-fs_1.6.5+dfsg-1_arm64.deb ... 1010s Unpacking r-cran-fs (1.6.5+dfsg-1) ... 1010s Selecting previously unselected package r-cran-rappdirs. 1010s Preparing to unpack .../205-r-cran-rappdirs_0.3.3-1build1_arm64.deb ... 1010s Unpacking r-cran-rappdirs (0.3.3-1build1) ... 1010s Selecting previously unselected package r-cran-sass. 1010s Preparing to unpack .../206-r-cran-sass_0.4.9+dfsg-1_arm64.deb ... 1010s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 1010s Selecting previously unselected package r-cran-bslib. 1010s Preparing to unpack .../207-r-cran-bslib_0.9.0+dfsg-3build1_all.deb ... 1010s Unpacking r-cran-bslib (0.9.0+dfsg-3build1) ... 1010s Selecting previously unselected package r-cran-fontawesome. 1010s Preparing to unpack .../208-r-cran-fontawesome_0.5.3-1_all.deb ... 1010s Unpacking r-cran-fontawesome (0.5.3-1) ... 1010s Selecting previously unselected package r-cran-tinytex. 1010s Preparing to unpack .../209-r-cran-tinytex_0.58-1_all.deb ... 1010s Unpacking r-cran-tinytex (0.58-1) ... 1010s Selecting previously unselected package libjs-modernizr. 1010s Preparing to unpack .../210-libjs-modernizr_3.13.0-0.1build1_all.deb ... 1010s Unpacking libjs-modernizr (3.13.0-0.1build1) ... 1010s Selecting previously unselected package r-cran-littler. 1010s Preparing to unpack .../211-r-cran-littler_0.3.22-1_arm64.deb ... 1010s Unpacking r-cran-littler (0.3.22-1) ... 1010s Selecting previously unselected package r-cran-pkgkitten. 1010s Preparing to unpack .../212-r-cran-pkgkitten_0.2.4-1_all.deb ... 1010s Unpacking r-cran-pkgkitten (0.2.4-1) ... 1010s Selecting previously unselected package r-cran-rcpp. 1010s Preparing to unpack .../213-r-cran-rcpp_1.1.0-1_arm64.deb ... 1010s Unpacking r-cran-rcpp (1.1.0-1) ... 1010s Selecting previously unselected package r-cran-later. 1010s Preparing to unpack .../214-r-cran-later_1.4.1+dfsg-1_arm64.deb ... 1010s Unpacking r-cran-later (1.4.1+dfsg-1) ... 1010s Selecting previously unselected package r-cran-magrittr. 1010s Preparing to unpack .../215-r-cran-magrittr_2.0.3-1_arm64.deb ... 1010s Unpacking r-cran-magrittr (2.0.3-1) ... 1010s Selecting previously unselected package r-cran-promises. 1011s Preparing to unpack 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Unpacking r-cran-commonmark (1.9.5-1) ... 1011s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 1011s Preparing to unpack .../222-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 1011s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 1011s Selecting previously unselected package r-cran-shiny. 1011s Preparing to unpack .../223-r-cran-shiny_1.10.0+dfsg-2_all.deb ... 1011s Unpacking r-cran-shiny (1.10.0+dfsg-2) ... 1011s Selecting previously unselected package r-cran-rmarkdown. 1011s Preparing to unpack .../224-r-cran-rmarkdown_2.30+dfsg-1_all.deb ... 1011s Unpacking r-cran-rmarkdown (2.30+dfsg-1) ... 1011s Selecting previously unselected package r-cran-bookdown. 1011s Preparing to unpack .../225-r-cran-bookdown_0.42+dfsg-1_all.deb ... 1011s Unpacking r-cran-bookdown (0.42+dfsg-1) ... 1011s Selecting previously unselected package r-cran-biocmanager. 1011s Preparing to unpack .../226-r-cran-biocmanager_1.30.25+dfsg-1_all.deb ... 1011s Unpacking r-cran-biocmanager (1.30.25+dfsg-1) ... 1011s Selecting previously unselected package tex-common. 1011s Preparing to unpack .../227-tex-common_6.20_all.deb ... 1011s Unpacking tex-common (6.20) ... 1011s Selecting previously unselected package t1utils. 1011s Preparing to unpack .../228-t1utils_1.41-4build4_arm64.deb ... 1011s Unpacking t1utils (1.41-4build4) ... 1011s Selecting previously unselected package texlive-binaries. 1011s Preparing to unpack .../229-texlive-binaries_2025.20250727.75242+ds-5build1_arm64.deb ... 1011s Unpacking texlive-binaries (2025.20250727.75242+ds-5build1) ... 1012s Selecting previously unselected package texlive-base. 1012s Preparing to unpack .../230-texlive-base_2025.20260124-1_all.deb ... 1012s Unpacking texlive-base (2025.20260124-1) ... 1013s Selecting previously unselected package texlive-latex-base. 1013s Preparing to unpack .../231-texlive-latex-base_2025.20260124-1_all.deb ... 1013s Unpacking texlive-latex-base (2025.20260124-1) ... 1013s Selecting previously unselected package texlive-bibtex-extra. 1013s Preparing to unpack .../232-texlive-bibtex-extra_2025.20260124-1_all.deb ... 1013s Unpacking texlive-bibtex-extra (2025.20260124-1) ... 1015s Selecting previously unselected package r-bioc-biocversion. 1015s Preparing to unpack .../233-r-bioc-biocversion_3.20.0-2_all.deb ... 1016s Unpacking r-bioc-biocversion (3.20.0-2) ... 1016s Selecting previously unselected package r-bioc-biocstyle. 1016s Preparing to unpack .../234-r-bioc-biocstyle_2.34.0+dfsg-1_all.deb ... 1016s Unpacking r-bioc-biocstyle (2.34.0+dfsg-1) ... 1016s Selecting previously unselected package r-cran-globaloptions. 1016s Preparing to unpack .../235-r-cran-globaloptions_0.1.3-1_all.deb ... 1016s Unpacking r-cran-globaloptions (0.1.3-1) ... 1016s Selecting previously unselected package r-cran-shape. 1016s Preparing to unpack .../236-r-cran-shape_1.4.6.1-1_all.deb ... 1016s Unpacking r-cran-shape (1.4.6.1-1) ... 1016s Selecting previously unselected package r-cran-colorspace. 1016s Preparing to unpack .../237-r-cran-colorspace_2.1-1+dfsg-1_arm64.deb ... 1016s Unpacking r-cran-colorspace (2.1-1+dfsg-1) ... 1016s Selecting previously unselected package r-cran-circlize. 1016s Preparing to unpack .../238-r-cran-circlize_0.4.17+dfsg-1_all.deb ... 1016s Unpacking r-cran-circlize (0.4.17+dfsg-1) ... 1016s Selecting previously unselected package r-cran-rjson. 1016s Preparing to unpack .../239-r-cran-rjson_0.2.23-1_arm64.deb ... 1016s Unpacking r-cran-rjson (0.2.23-1) ... 1016s Selecting previously unselected package r-cran-getoptlong. 1016s Preparing to unpack .../240-r-cran-getoptlong_1.1.0+dfsg-1_all.deb ... 1016s Unpacking r-cran-getoptlong (1.1.0+dfsg-1) ... 1016s Selecting previously unselected package r-cran-cluster. 1016s Preparing to unpack .../241-r-cran-cluster_2.1.8.2-1_arm64.deb ... 1016s Unpacking r-cran-cluster (2.1.8.2-1) ... 1016s Selecting previously unselected package r-cran-clue. 1016s Preparing to unpack .../242-r-cran-clue_0.3-66-1_arm64.deb ... 1016s Unpacking r-cran-clue (0.3-66-1) ... 1016s Selecting previously unselected package r-cran-rcolorbrewer. 1016s Preparing to unpack .../243-r-cran-rcolorbrewer_1.1-3-1build2_all.deb ... 1016s Unpacking r-cran-rcolorbrewer (1.1-3-1build2) ... 1016s Selecting previously unselected package r-cran-matrixstats. 1016s Preparing to unpack .../244-r-cran-matrixstats_1.5.0-1_arm64.deb ... 1016s Unpacking r-cran-matrixstats (1.5.0-1) ... 1016s Selecting previously unselected package r-cran-iterators. 1016s Preparing to unpack .../245-r-cran-iterators_1.0.14-1build1_all.deb ... 1016s Unpacking r-cran-iterators (1.0.14-1build1) ... 1017s Selecting previously unselected package r-cran-foreach. 1017s Preparing to unpack .../246-r-cran-foreach_1.5.2-1build1_all.deb ... 1017s Unpacking r-cran-foreach (1.5.2-1build1) ... 1017s Selecting previously unselected package r-cran-doparallel. 1017s Preparing to unpack .../247-r-cran-doparallel_1.0.17-1build1_all.deb ... 1017s Unpacking r-cran-doparallel (1.0.17-1build1) ... 1017s Selecting previously unselected package r-bioc-complexheatmap. 1017s Preparing to unpack .../248-r-bioc-complexheatmap_2.22.0+dfsg-2_all.deb ... 1017s Unpacking r-bioc-complexheatmap (2.22.0+dfsg-2) ... 1017s Selecting previously unselected package r-bioc-consensusclusterplus. 1017s Preparing to unpack .../249-r-bioc-consensusclusterplus_1.70.0-2_all.deb ... 1017s Unpacking r-bioc-consensusclusterplus (1.70.0-2) ... 1017s Selecting previously unselected package r-cran-backports. 1017s Preparing to unpack .../250-r-cran-backports_1.5.0-2_arm64.deb ... 1017s Unpacking r-cran-backports (1.5.0-2) ... 1017s Selecting previously unselected package r-cran-generics. 1017s Preparing to unpack .../251-r-cran-generics_0.1.4-1_all.deb ... 1017s Unpacking r-cran-generics (0.1.4-1) ... 1017s Selecting previously unselected package r-cran-utf8. 1017s Preparing to unpack .../252-r-cran-utf8_1.2.4-1_arm64.deb ... 1017s Unpacking r-cran-utf8 (1.2.4-1) ... 1017s Selecting previously unselected package r-cran-pillar. 1017s Preparing to unpack .../253-r-cran-pillar_1.11.1+dfsg-1_all.deb ... 1017s Unpacking r-cran-pillar (1.11.1+dfsg-1) ... 1017s Selecting previously unselected package r-cran-fansi. 1017s Preparing to unpack .../254-r-cran-fansi_1.0.6-2_arm64.deb ... 1017s Unpacking r-cran-fansi (1.0.6-2) ... 1017s Selecting previously unselected package r-cran-tibble. 1017s Preparing to unpack .../255-r-cran-tibble_3.2.1+dfsg-3_arm64.deb ... 1017s Unpacking r-cran-tibble (3.2.1+dfsg-3) ... 1017s Selecting previously unselected package r-cran-tidyselect. 1017s Preparing to unpack .../256-r-cran-tidyselect_1.2.1+dfsg-1_arm64.deb ... 1017s Unpacking r-cran-tidyselect (1.2.1+dfsg-1) ... 1017s Selecting previously unselected package r-cran-dplyr. 1017s Preparing to unpack .../257-r-cran-dplyr_1.1.4-4_arm64.deb ... 1017s Unpacking r-cran-dplyr (1.1.4-4) ... 1017s Selecting previously unselected package r-cran-purrr. 1017s Preparing to unpack .../258-r-cran-purrr_1.0.4-1_arm64.deb ... 1017s Unpacking r-cran-purrr (1.0.4-1) ... 1017s Selecting previously unselected package r-cran-stringi. 1017s Preparing to unpack .../259-r-cran-stringi_1.8.4-1build2_arm64.deb ... 1017s Unpacking r-cran-stringi (1.8.4-1build2) ... 1017s Selecting previously unselected package r-cran-stringr. 1017s Preparing to unpack .../260-r-cran-stringr_1.5.1-1_all.deb ... 1017s Unpacking r-cran-stringr (1.5.1-1) ... 1017s Selecting previously unselected package r-cran-tidyr. 1017s Preparing to unpack .../261-r-cran-tidyr_1.3.1-1_arm64.deb ... 1017s Unpacking r-cran-tidyr (1.3.1-1) ... 1017s Selecting previously unselected package r-cran-broom. 1017s Preparing to unpack .../262-r-cran-broom_1.0.12+dfsg-1_all.deb ... 1017s Unpacking r-cran-broom (1.0.12+dfsg-1) ... 1017s Selecting previously unselected package r-cran-gtable. 1017s Preparing to unpack .../263-r-cran-gtable_0.3.6+dfsg-1_all.deb ... 1017s Unpacking r-cran-gtable (0.3.6+dfsg-1) ... 1017s Selecting previously unselected package r-cran-isoband. 1017s Preparing to unpack .../264-r-cran-isoband_0.2.7-1_arm64.deb ... 1017s Unpacking r-cran-isoband (0.2.7-1) ... 1017s Selecting previously unselected package r-cran-s7. 1017s Preparing to unpack .../265-r-cran-s7_0.2.0-1_arm64.deb ... 1017s Unpacking r-cran-s7 (0.2.0-1) ... 1017s Selecting previously unselected package r-cran-farver. 1017s Preparing to unpack .../266-r-cran-farver_2.1.2-1_arm64.deb ... 1017s Unpacking r-cran-farver (2.1.2-1) ... 1017s Selecting previously unselected package r-cran-labeling. 1018s Preparing to unpack .../267-r-cran-labeling_0.4.3-1_all.deb ... 1018s Unpacking r-cran-labeling (0.4.3-1) ... 1018s Selecting previously unselected package r-cran-viridislite. 1018s Preparing to unpack .../268-r-cran-viridislite_0.4.3-1_all.deb ... 1018s Unpacking r-cran-viridislite (0.4.3-1) ... 1018s Selecting previously unselected package r-cran-scales. 1018s Preparing to unpack .../269-r-cran-scales_1.4.0-1_all.deb ... 1018s Unpacking r-cran-scales (1.4.0-1) ... 1018s Selecting previously unselected package r-cran-ggplot2. 1018s Preparing to unpack .../270-r-cran-ggplot2_4.0.2+dfsg-1_all.deb ... 1018s Unpacking r-cran-ggplot2 (4.0.2+dfsg-1) ... 1018s Selecting previously unselected package r-cran-cowplot. 1018s Preparing to unpack .../271-r-cran-cowplot_1.1.3+dfsg-1_all.deb ... 1018s Unpacking r-cran-cowplot (1.1.3+dfsg-1) ... 1018s Selecting previously unselected package r-cran-gridextra. 1018s Preparing to unpack .../272-r-cran-gridextra_2.3-3build2_all.deb ... 1018s Unpacking r-cran-gridextra (2.3-3build2) ... 1018s Selecting previously unselected package r-cran-viridis. 1018s Preparing to unpack .../273-r-cran-viridis_0.6.5-1_all.deb ... 1018s Unpacking r-cran-viridis (0.6.5-1) ... 1018s Selecting previously unselected package r-cran-dendextend. 1018s Preparing to unpack .../274-r-cran-dendextend_1.19.1+dfsg-1_all.deb ... 1018s Unpacking r-cran-dendextend (1.19.1+dfsg-1) ... 1018s Selecting previously unselected package r-bioc-genomicranges. 1018s Preparing to unpack .../275-r-bioc-genomicranges_1.58.0+dfsg-2_arm64.deb ... 1018s Unpacking r-bioc-genomicranges (1.58.0+dfsg-2) ... 1018s Selecting previously unselected package r-bioc-matrixgenerics. 1018s Preparing to unpack .../276-r-bioc-matrixgenerics_1.18.1-1_all.deb ... 1018s Unpacking r-bioc-matrixgenerics (1.18.1-1) ... 1018s Selecting previously unselected package r-cran-lattice. 1018s Preparing to unpack .../277-r-cran-lattice_0.22-7-1_arm64.deb ... 1018s Unpacking r-cran-lattice (0.22-7-1) ... 1018s Selecting previously unselected package r-cran-matrix. 1018s Preparing to unpack .../278-r-cran-matrix_1.7-4-1_arm64.deb ... 1018s Unpacking r-cran-matrix (1.7-4-1) ... 1018s Selecting previously unselected package r-cran-abind. 1018s Preparing to unpack .../279-r-cran-abind_1.4-8-1build1_all.deb ... 1018s Unpacking r-cran-abind (1.4-8-1build1) ... 1018s Selecting previously unselected package r-bioc-s4arrays. 1018s Preparing to unpack .../280-r-bioc-s4arrays_1.6.0+dfsg-2_arm64.deb ... 1018s Unpacking r-bioc-s4arrays (1.6.0+dfsg-2) ... 1018s Selecting previously unselected package r-bioc-sparsearray. 1018s Preparing to unpack .../281-r-bioc-sparsearray_1.6.2+dfsg-2_arm64.deb ... 1018s Unpacking r-bioc-sparsearray (1.6.2+dfsg-2) ... 1019s Selecting previously unselected package r-bioc-delayedarray. 1019s Preparing to unpack .../282-r-bioc-delayedarray_0.32.0+dfsg-2_arm64.deb ... 1019s Unpacking r-bioc-delayedarray (0.32.0+dfsg-2) ... 1019s Selecting previously unselected package r-bioc-summarizedexperiment. 1019s Preparing to unpack .../283-r-bioc-summarizedexperiment_1.36.0+dfsg-2_all.deb ... 1019s Unpacking r-bioc-summarizedexperiment (1.36.0+dfsg-2) ... 1019s Selecting previously unselected package r-cran-locfit. 1019s Preparing to unpack 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r-bioc-edger (4.4.2+dfsg-1) ... 1019s Selecting previously unselected package r-cran-mass. 1019s Preparing to unpack .../290-r-cran-mass_7.3-65-1_arm64.deb ... 1019s Unpacking r-cran-mass (7.3-65-1) ... 1019s Selecting previously unselected package r-cran-ggdendro. 1019s Preparing to unpack .../291-r-cran-ggdendro_0.2.0+dfsg-1_all.deb ... 1019s Unpacking r-cran-ggdendro (0.2.0+dfsg-1) ... 1019s Selecting previously unselected package r-cran-ggrepel. 1019s Preparing to unpack .../292-r-cran-ggrepel_0.9.6-1_arm64.deb ... 1019s Unpacking r-cran-ggrepel (0.9.6-1) ... 1019s Selecting previously unselected package r-cran-logging. 1019s Preparing to unpack .../293-r-cran-logging_0.10-108-2build2_all.deb ... 1019s Unpacking r-cran-logging (0.10-108-2build2) ... 1019s Selecting previously unselected package r-cran-mnormt. 1019s Preparing to unpack .../294-r-cran-mnormt_2.1.2-1_arm64.deb ... 1019s Unpacking r-cran-mnormt (2.1.2-1) ... 1019s Selecting previously unselected package r-cran-nlme. 1019s Preparing to unpack .../295-r-cran-nlme_3.1.168-1_arm64.deb ... 1019s Unpacking r-cran-nlme (3.1.168-1) ... 1019s Selecting previously unselected package r-cran-gparotation. 1020s Preparing to unpack .../296-r-cran-gparotation_2025.3-1-1_all.deb ... 1020s Unpacking r-cran-gparotation (2025.3-1-1) ... 1020s Selecting previously unselected package r-cran-psych. 1020s Preparing to unpack .../297-r-cran-psych_2.4.12-1_all.deb ... 1020s Unpacking r-cran-psych (2.4.12-1) ... 1020s Selecting previously unselected package r-cran-plyr. 1020s Preparing to unpack .../298-r-cran-plyr_1.8.9-1_arm64.deb ... 1020s Unpacking r-cran-plyr (1.8.9-1) ... 1020s Selecting previously unselected package r-cran-reshape. 1020s Preparing to unpack .../299-r-cran-reshape_0.8.10-1_all.deb ... 1020s Unpacking r-cran-reshape (0.8.10-1) ... 1020s Selecting previously unselected package r-bioc-degreport. 1020s Preparing to unpack .../300-r-bioc-degreport_1.42.0+dfsg-2_all.deb ... 1020s Unpacking r-bioc-degreport 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(8.6.17-1) ... 1024s Setting up libpango-1.0-0:arm64 (1.57.0-1) ... 1024s Setting up libreadline-dev:arm64 (8.3-3) ... 1024s Setting up libcairo2:arm64 (1.18.4-3) ... 1024s Setting up gcc-15 (15.2.0-12ubuntu1) ... 1024s Setting up libstdc++-15-dev:arm64 (15.2.0-12ubuntu1) ... 1024s Setting up gfortran-15-aarch64-linux-gnu (15.2.0-12ubuntu1) ... 1024s Setting up g++-15-aarch64-linux-gnu (15.2.0-12ubuntu1) ... 1024s Setting up libxt6t64:arm64 (1:1.2.1-1.3) ... 1024s Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu2) ... 1024s Setting up libboost1.90-dev:arm64 (1.90.0-2ubuntu1) ... 1024s Setting up libboost-dev:arm64 (1.90.0.0ubuntu3) ... 1024s Setting up libpangoft2-1.0-0:arm64 (1.57.0-1) ... 1024s Setting up libjpeg8-dev:arm64 (8c-2ubuntu11) ... 1024s Setting up g++-15 (15.2.0-12ubuntu1) ... 1024s Setting up gfortran-15 (15.2.0-12ubuntu1) ... 1024s Setting up libpangocairo-1.0-0:arm64 (1.57.0-1) ... 1024s Setting up gcc-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 1024s Setting 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update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode 1024s update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode 1024s Setting up r-cran-globaloptions (0.1.3-1) ... 1024s Setting up r-cran-cluster (2.1.8.2-1) ... 1024s Setting up r-cran-statmod (1.5.0-1) ... 1024s Setting up g++-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 1024s Setting up gfortran-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 1024s Setting up r-cran-commonmark (1.9.5-1) ... 1024s Setting up r-cran-rjson (0.2.23-1) ... 1024s Setting up r-cran-r6 (2.6.1-1) ... 1024s Setting up r-cran-pkgkitten (0.2.4-1) ... 1024s Setting up texlive-base (2025.20260124-1) ... 1025s tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps 1025s tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg 1025s tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper 1026s tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex 1026s Setting up r-cran-magrittr (2.0.3-1) ... 1026s Setting up r-cran-rappdirs (0.3.3-1build1) ... 1026s Setting up r-bioc-genomeinfodbdata (1.2.13-2) ... 1026s Setting up r-cran-littler (0.3.22-1) ... 1026s Setting up r-cran-bh (1.84.0-1) ... 1026s Setting up r-cran-fs (1.6.5+dfsg-1) ... 1026s Setting up r-cran-rcpp (1.1.0-1) ... 1026s Setting up r-cran-curl (7.0.0+dfsg-1) ... 1026s Setting up r-cran-codetools (0.2-20-1build1) ... 1026s Setting up r-cran-brio (1.1.5-1) ... 1026s Setting up r-cran-diffobj (0.3.5-1build1) ... 1026s Setting up r-bioc-biocgenerics (0.52.0-2) ... 1026s Setting up r-cran-rlang (1.1.5-3) ... 1026s Setting up r-cran-matrixstats (1.5.0-1) ... 1026s Setting up r-cran-logging (0.10-108-2build2) ... 1026s Setting up r-bioc-matrixgenerics (1.18.1-1) ... 1026s Setting up r-cran-xfun (0.55+dfsg-1) ... 1026s Setting up r-cran-sys (3.4.3-1) ... 1026s Setting up 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(1:0.4.4-2build1) ... 1026s Setting up r-cran-glue (1.8.0-1) ... 1026s Setting up r-cran-bit (4.6.0+dfsg-1) ... 1026s Setting up r-cran-xtable (1:1.8-4-2build1) ... 1026s Setting up r-cran-clue (0.3-66-1) ... 1026s Setting up r-cran-cli (3.6.4-1) ... 1026s Setting up gfortran (4:15.2.0-4ubuntu1) ... 1026s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 1026s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 1026s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 1026s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 1026s Setting up r-cran-lifecycle (1.0.5+dfsg-1) ... 1026s Setting up r-bioc-biocversion (3.20.0-2) ... 1026s Setting up r-cran-rprojroot (2.1.1-1) ... 1026s Setting up r-cran-bit64 (4.6.0-1-4) ... 1026s Setting up r-cran-biocmanager (1.30.25+dfsg-1) ... 1026s Setting up r-bioc-zlibbioc (1.52.0+dfsg-2) ... 1026s Setting up r-cran-shape (1.4.6.1-1) ... 1026s Setting up r-cran-askpass (1.2.1-1) ... 1026s Setting up r-cran-fastmap (1.2.0-1) ... 1026s Setting up r-cran-png (0.1-8-1build2) ... 1026s Setting up r-bioc-biobase (2.66.0-2) ... 1026s Setting up r-cran-jsonlite (1.9.1+dfsg-1) ... 1026s Setting up r-cran-mnormt (2.1.2-1) ... 1026s Setting up r-cran-pkgconfig (2.0.3-2build2) ... 1026s Setting up r-cran-utf8 (1.2.4-1) ... 1026s Setting up r-cran-colorspace (2.1-1+dfsg-1) ... 1026s Setting up r-cran-stringi (1.8.4-1build2) ... 1026s Setting up texlive-latex-base (2025.20260124-1) ... 1026s Setting up r-cran-s7 (0.2.0-1) ... 1026s Setting up r-cran-cpp11 (0.5.3-1) ... 1026s Setting up r-cran-plyr (1.8.9-1) ... 1026s Setting up r-cran-rcolorbrewer (1.1-3-1build2) ... 1026s Setting up r-bioc-s4vectors (0.44.0+dfsg-2) ... 1026s Setting up r-cran-isoband (0.2.7-1) ... 1026s Setting up r-cran-futile.logger (1.4.3-4build2) ... 1026s Setting up r-cran-waldo (0.6.2-1) ... 1026s Setting up r-cran-scales (1.4.0-1) ... 1026s Setting up r-bioc-limma (3.62.2+dfsg-1) ... 1026s Setting up r-cran-gtable (0.3.6+dfsg-1) ... 1026s Setting up r-cran-later (1.4.1+dfsg-1) ... 1026s Setting up r-cran-matrix (1.7-4-1) ... 1026s Setting up r-cran-circlize (0.4.17+dfsg-1) ... 1026s Setting up r-cran-doparallel (1.0.17-1build1) ... 1026s Setting up r-cran-htmltools (0.5.8.1-1) ... 1026s Setting up r-cran-tinytex (0.58-1) ... 1026s Setting up r-cran-knitr (1.51+dfsg-1) ... 1026s Setting up g++ (4:15.2.0-4ubuntu1) ... 1026s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 1026s Setting up r-cran-cachem (1.1.0-1) ... 1026s Setting up r-cran-sass (0.4.9+dfsg-1) ... 1026s Setting up build-essential (12.12ubuntu2) ... 1026s Setting up r-cran-rcpparmadillo (15.2.3-1-1) ... 1026s Setting up r-bioc-iranges (2.40.1-3) ... 1026s Setting up r-cran-vctrs (0.6.5-1) ... 1026s Setting up r-cran-pillar (1.11.1+dfsg-1) ... 1026s Setting up r-cran-pheatmap (1.0.13-1) ... 1026s Setting up r-cran-reshape (0.8.10-1) ... 1026s Setting up r-cran-openssl (2.3.2+dfsg-1) ... 1026s Setting up r-base-dev (4.5.2-1ubuntu2) ... 1026s Setting up r-bioc-all (1.48.0-2) ... 1026s Setting up r-bioc-s4arrays (1.6.0+dfsg-2) ... 1026s Setting up r-cran-stringr (1.5.1-1) ... 1026s Setting up r-bioc-biocparallel (1.40.0-2) ... 1026s Setting up r-cran-callr (3.7.6-1) ... 1026s Setting up r-bioc-edger (4.4.2+dfsg-1) ... 1026s Setting up r-cran-ggplot2 (4.0.2+dfsg-1) ... 1026s Setting up r-cran-desc (1.4.3-1) ... 1026s Setting up r-cran-tibble (3.2.1+dfsg-3) ... 1026s Setting up r-cran-fontawesome (0.5.3-1) ... 1026s Setting up r-cran-jquerylib (0.1.4+dfsg-5) ... 1026s Setting up r-cran-psych (2.4.12-1) ... 1026s Setting up r-cran-tidyselect (1.2.1+dfsg-1) ... 1026s Setting up texlive-bibtex-extra (2025.20260124-1) ... 1026s Setting up r-bioc-consensusclusterplus (1.70.0-2) ... 1026s Setting up r-cran-httr (1.4.7+dfsg-1) ... 1026s Setting up r-cran-gridextra (2.3-3build2) ... 1026s Setting up r-cran-memoise (2.0.1-1build1) ... 1026s Setting up r-cran-promises (1.3.2+dfsg-1) ... 1026s Setting up r-cran-purrr (1.0.4-1) ... 1026s Setting up r-cran-ggrepel (0.9.6-1) ... 1026s Setting up r-cran-ggdendro (0.2.0+dfsg-1) ... 1026s Setting up r-cran-blob (1.3.0-1) ... 1026s Setting up r-bioc-complexheatmap (2.22.0+dfsg-2) ... 1026s Setting up pkg-r-autopkgtest (20250812) ... 1026s Setting up r-bioc-xvector (0.46.0-2) ... 1026s Setting up r-cran-pkgbuild (1.4.8-1) ... 1026s Setting up r-cran-dplyr (1.1.4-4) ... 1026s Setting up r-cran-rsqlite (2.3.9-1) ... 1026s Setting up r-cran-cowplot (1.1.3+dfsg-1) ... 1026s Setting up r-cran-pkgload (1.4.1-1) ... 1026s Setting up r-bioc-ucsc.utils (1.2.0+ds-2) ... 1026s Setting up r-bioc-sparsearray (1.6.2+dfsg-2) ... 1026s Setting up r-cran-httpuv (1.6.15+dfsg-1) ... 1026s Setting up r-cran-viridis (0.6.5-1) ... 1026s Setting up r-cran-testthat (3.2.3-1) ... 1026s Setting up r-bioc-genomeinfodb (1.42.3+dfsg-1) ... 1026s Setting up r-cran-bslib (0.9.0+dfsg-3build1) ... 1026s Setting up r-cran-tidyr (1.3.1-1) ... 1026s Setting up r-bioc-delayedarray (0.32.0+dfsg-2) ... 1026s Setting up r-cran-dendextend (1.19.1+dfsg-1) ... 1026s Setting up r-bioc-genomicranges (1.58.0+dfsg-2) ... 1026s Setting up r-bioc-biostrings (2.74.1+dfsg-2) ... 1026s Setting up r-cran-shiny (1.10.0+dfsg-2) ... 1026s Setting up r-cran-broom (1.0.12+dfsg-1) ... 1026s Setting up r-cran-rmarkdown (2.30+dfsg-1) ... 1026s Setting up r-cran-bookdown (0.42+dfsg-1) ... 1026s Setting up r-bioc-summarizedexperiment (1.36.0+dfsg-2) ... 1026s Setting up r-bioc-keggrest (1.46.0+dfsg-3) ... 1026s Setting up r-bioc-deseq2 (1.46.0+dfsg-2) ... 1026s Setting up r-bioc-annotationdbi (1.68.0-2) ... 1026s Setting up r-bioc-degreport (1.42.0+dfsg-2) ... 1026s Setting up r-bioc-biocstyle (2.34.0+dfsg-1) ... 1026s Processing triggers for libc-bin (2.42-2ubuntu4) ... 1026s Processing triggers for man-db (2.13.1-1build1) ... 1028s Processing triggers for install-info (7.2-5) ... 1028s Processing triggers for tex-common (6.20) ... 1028s Running updmap-sys. This may take some time... done. 1028s Running mktexlsr /var/lib/texmf ... done. 1028s Building format(s) --all. 1055s This may take some time... done. 1055s autopkgtest [23:33:12]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 1055s autopkgtest [23:33:12]: test pkg-r-autopkgtest: [----------------------- 1056s Test: Try to load the R library DEGreport 1056s 1056s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 1056s Copyright (C) 2025 The R Foundation for Statistical Computing 1056s Platform: aarch64-unknown-linux-gnu 1056s 1056s R is free software and comes with ABSOLUTELY NO WARRANTY. 1056s You are welcome to redistribute it under certain conditions. 1056s Type 'license()' or 'licence()' for distribution details. 1056s 1056s R is a collaborative project with many contributors. 1056s Type 'contributors()' for more information and 1056s 'citation()' on how to cite R or R packages in publications. 1056s 1056s Type 'demo()' for some demos, 'help()' for on-line help, or 1056s 'help.start()' for an HTML browser interface to help. 1056s Type 'q()' to quit R. 1056s 1056s > library('DEGreport') 1063s > 1064s Test: Run tests for DEGreport 1064s Start: testthat.R 1064s 1064s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 1064s Copyright (C) 2025 The R Foundation for Statistical Computing 1064s Platform: aarch64-unknown-linux-gnu 1064s 1064s R is free software and comes with ABSOLUTELY NO WARRANTY. 1064s You are welcome to redistribute it under certain conditions. 1064s Type 'license()' or 'licence()' for distribution details. 1064s 1064s R is a collaborative project with many contributors. 1064s Type 'contributors()' for more information and 1064s 'citation()' on how to cite R or R packages in publications. 1064s 1064s Type 'demo()' for some demos, 'help()' for on-line help, or 1064s 'help.start()' for an HTML browser interface to help. 1064s Type 'q()' to quit R. 1064s 1064s > library(testthat) 1064s > library(edgeR) 1064s Loading required package: limma 1064s > library(DESeq2) 1064s Loading required package: S4Vectors 1064s Loading required package: stats4 1064s Loading required package: BiocGenerics 1064s 1064s Attaching package: ‘BiocGenerics’ 1064s 1064s The following object is masked from ‘package:limma’: 1064s 1064s plotMA 1064s 1064s The following objects are masked from ‘package:stats’: 1064s 1064s IQR, mad, sd, var, xtabs 1064s 1064s The following objects are masked from ‘package:base’: 1064s 1064s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 1064s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 1064s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 1064s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 1064s Position, rank, rbind, Reduce, rownames, sapply, saveRDS, setdiff, 1064s table, tapply, union, unique, unsplit, which.max, which.min 1064s 1065s 1065s Attaching package: ‘S4Vectors’ 1065s 1065s The following object is masked from ‘package:utils’: 1065s 1065s findMatches 1065s 1065s The following objects are masked from ‘package:base’: 1065s 1065s expand.grid, I, unname 1065s 1065s Loading required package: IRanges 1066s Loading required package: GenomicRanges 1066s Loading required package: GenomeInfoDb 1066s Loading required package: SummarizedExperiment 1066s Loading required package: MatrixGenerics 1066s Loading required package: matrixStats 1066s 1066s Attaching package: ‘MatrixGenerics’ 1066s 1066s The following objects are masked from ‘package:matrixStats’: 1066s 1066s colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse, 1066s colCounts, colCummaxs, colCummins, colCumprods, colCumsums, 1066s colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs, 1066s colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats, 1066s colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds, 1066s colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads, 1066s colWeightedMeans, colWeightedMedians, colWeightedSds, 1066s colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet, 1066s rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods, 1066s rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps, 1066s rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins, 1066s rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks, 1066s rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars, 1066s rowWeightedMads, rowWeightedMeans, rowWeightedMedians, 1066s rowWeightedSds, rowWeightedVars 1066s 1066s Loading required package: Biobase 1067s Welcome to Bioconductor 1067s 1067s Vignettes contain introductory material; view with 1067s 'browseVignettes()'. To cite Bioconductor, see 1067s 'citation("Biobase")', and for packages 'citation("pkgname")'. 1067s 1067s 1067s Attaching package: ‘Biobase’ 1067s 1067s The following object is masked from ‘package:MatrixGenerics’: 1067s 1067s rowMedians 1067s 1067s The following objects are masked from ‘package:matrixStats’: 1067s 1067s anyMissing, rowMedians 1067s 1071s > library(DEGreport) 1071s > 1071s > # test_check("DEGreport") 1071s > 1072s autopkgtest [23:33:29]: test pkg-r-autopkgtest: -----------------------] 1072s pkg-r-autopkgtest PASS 1072s autopkgtest [23:33:29]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 1072s autopkgtest [23:33:29]: @@@@@@@@@@@@@@@@@@@@ summary 1072s pkg-r-autopkgtest PASS