0s autopkgtest [23:15:34]: starting date and time: 2026-02-09 23:15:34+0000 0s autopkgtest [23:15:34]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [23:15:34]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.imbqnhg8/out --timeout-copy=6000 --needs-internet=try --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-cran-ggplot2 --apt-upgrade r-bioc-decontam --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-cran-ggplot2/4.0.2+dfsg-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-arm64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@sto01-arm64-27.secgroup --name adt-resolute-arm64-r-bioc-decontam-20260209-231534-juju-7f2275-prod-proposed-migration-environment-15-e44a6c24-46bf-4c57-a223-a325bfb14357 --image adt/ubuntu-resolute-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-autopkgtest-workers-arm64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 3s Creating nova instance adt-resolute-arm64-r-bioc-decontam-20260209-231534-juju-7f2275-prod-proposed-migration-environment-15-e44a6c24-46bf-4c57-a223-a325bfb14357 from image adt/ubuntu-resolute-arm64-server-20260209.img (UUID 793037ca-75af-461b-82de-f8081300b2e3)... 112s autopkgtest [23:17:26]: testbed dpkg architecture: arm64 112s autopkgtest [23:17:26]: testbed apt version: 3.1.15 112s autopkgtest [23:17:26]: @@@@@@@@@@@@@@@@@@@@ test bed setup 113s autopkgtest [23:17:27]: testbed release detected to be: None 113s autopkgtest [23:17:27]: updating testbed package index (apt update) 114s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 114s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 114s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 114s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 114s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [29.4 kB] 114s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [176 kB] 114s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1645 kB] 116s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 Packages [246 kB] 117s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 c-n-f Metadata [6216 B] 117s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 c-n-f Metadata [304 B] 117s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 Packages [1580 kB] 120s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 c-n-f Metadata [32.0 kB] 120s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 Packages [21.7 kB] 120s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 c-n-f Metadata [688 B] 121s Fetched 3862 kB in 6s (626 kB/s) 122s Reading package lists... 123s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 123s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 123s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 123s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 123s Reading package lists... 124s Reading package lists... 124s Building dependency tree... 124s Reading state information... 124s Calculating upgrade... 124s The following packages will be upgraded: 124s cryptsetup-bin dracut-install iproute2 iptables libcryptsetup12 libip4tc2 124s libip6tc2 libxtables12 wget 124s 9 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 124s Need to get 2534 kB of archives. 124s After this operation, 18.4 kB of additional disk space will be used. 124s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 iptables arm64 1.8.11-2ubuntu3 [386 kB] 124s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 libip4tc2 arm64 1.8.11-2ubuntu3 [24.3 kB] 124s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 libip6tc2 arm64 1.8.11-2ubuntu3 [24.7 kB] 124s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 libxtables12 arm64 1.8.11-2ubuntu3 [36.7 kB] 124s Get:5 http://ftpmaster.internal/ubuntu resolute/main arm64 iproute2 arm64 6.18.0-1ubuntu1 [1171 kB] 126s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 libcryptsetup12 arm64 2:2.8.0-1ubuntu3 [274 kB] 126s Get:7 http://ftpmaster.internal/ubuntu resolute/main arm64 wget arm64 1.25.0-2ubuntu4 [344 kB] 126s Get:8 http://ftpmaster.internal/ubuntu resolute/main arm64 cryptsetup-bin arm64 2:2.8.0-1ubuntu3 [227 kB] 126s Get:9 http://ftpmaster.internal/ubuntu resolute/main arm64 dracut-install arm64 109-11ubuntu1 [45.3 kB] 126s dpkg-preconfigure: unable to re-open stdin: No such file or directory 126s Fetched 2534 kB in 2s (1482 kB/s) 127s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 136597 files and directories currently installed.) 127s Preparing to unpack .../0-iptables_1.8.11-2ubuntu3_arm64.deb ... 127s Unpacking iptables (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 127s Preparing to unpack .../1-libip4tc2_1.8.11-2ubuntu3_arm64.deb ... 127s Unpacking libip4tc2:arm64 (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 127s Preparing to unpack .../2-libip6tc2_1.8.11-2ubuntu3_arm64.deb ... 127s Unpacking libip6tc2:arm64 (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 127s Preparing to unpack .../3-libxtables12_1.8.11-2ubuntu3_arm64.deb ... 127s Unpacking libxtables12:arm64 (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 127s Preparing to unpack .../4-iproute2_6.18.0-1ubuntu1_arm64.deb ... 127s Unpacking iproute2 (6.18.0-1ubuntu1) over (6.16.0-1ubuntu3) ... 127s Preparing to unpack .../5-libcryptsetup12_2%3a2.8.0-1ubuntu3_arm64.deb ... 127s Unpacking libcryptsetup12:arm64 (2:2.8.0-1ubuntu3) over (2:2.8.0-1ubuntu2) ... 127s Preparing to unpack .../6-wget_1.25.0-2ubuntu4_arm64.deb ... 127s Unpacking wget (1.25.0-2ubuntu4) over (1.25.0-2ubuntu3) ... 128s Preparing to unpack .../7-cryptsetup-bin_2%3a2.8.0-1ubuntu3_arm64.deb ... 128s Unpacking cryptsetup-bin (2:2.8.0-1ubuntu3) over (2:2.8.0-1ubuntu2) ... 128s Preparing to unpack .../8-dracut-install_109-11ubuntu1_arm64.deb ... 128s Unpacking dracut-install (109-11ubuntu1) over (109-9ubuntu1) ... 128s Setting up libip4tc2:arm64 (1.8.11-2ubuntu3) ... 128s Setting up wget (1.25.0-2ubuntu4) ... 128s Setting up libip6tc2:arm64 (1.8.11-2ubuntu3) ... 128s Setting up libxtables12:arm64 (1.8.11-2ubuntu3) ... 128s Setting up dracut-install (109-11ubuntu1) ... 128s Setting up libcryptsetup12:arm64 (2:2.8.0-1ubuntu3) ... 128s Setting up cryptsetup-bin (2:2.8.0-1ubuntu3) ... 128s Setting up iptables (1.8.11-2ubuntu3) ... 128s Setting up iproute2 (6.18.0-1ubuntu1) ... 128s Processing triggers for man-db (2.13.1-1build1) ... 129s Processing triggers for install-info (7.2-5) ... 129s Processing triggers for libc-bin (2.42-2ubuntu4) ... 129s autopkgtest [23:17:43]: upgrading testbed (apt dist-upgrade and autopurge) 129s Reading package lists... 130s Building dependency tree... 130s Reading state information... 130s Calculating upgrade... 130s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 130s Reading package lists... 131s Building dependency tree... 131s Reading state information... 131s Solving dependencies... 131s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 134s autopkgtest [23:17:48]: testbed running kernel: Linux 6.19.0-3-generic #3-Ubuntu SMP PREEMPT_DYNAMIC Fri Jan 23 19:46:27 UTC 2026 134s autopkgtest [23:17:48]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-decontam 135s Get:1 http://ftpmaster.internal/ubuntu resolute/universe r-bioc-decontam 1.26.0+dfsg-2 (dsc) [2139 B] 135s Get:2 http://ftpmaster.internal/ubuntu resolute/universe r-bioc-decontam 1.26.0+dfsg-2 (tar) [161 kB] 135s Get:3 http://ftpmaster.internal/ubuntu resolute/universe r-bioc-decontam 1.26.0+dfsg-2 (diff) [5176 B] 135s gpgv: Signature made Sat Jan 11 16:30:45 2025 UTC 135s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 135s gpgv: issuer "crusoe@debian.org" 135s gpgv: Can't check signature: No public key 135s dpkg-source: warning: cannot verify inline signature for ./r-bioc-decontam_1.26.0+dfsg-2.dsc: no acceptable signature found 136s autopkgtest [23:17:50]: testing package r-bioc-decontam version 1.26.0+dfsg-2 136s autopkgtest [23:17:50]: build not needed 138s autopkgtest [23:17:52]: test pkg-r-autopkgtest: preparing testbed 138s Reading package lists... 138s Building dependency tree... 138s Reading state information... 138s Solving dependencies... 139s The following NEW packages will be installed: 139s build-essential cpp cpp-15 cpp-15-aarch64-linux-gnu cpp-aarch64-linux-gnu 139s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 139s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 139s g++ g++-15 g++-15-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-15 139s gcc-15-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-15 139s gfortran-15-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 139s javascript-common libamd3 libasan8 libbibtex-parser-perl libblas-dev 139s libblas3 libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 libcolamd3 139s libcrypt-dev libdatrie1 libdeflate-dev libdeflate0 libfontconfig1 139s libgcc-15-dev libgfortran-15-dev libgfortran5 libglpk40 libgomp1 139s libgraphite2-3 libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl 139s libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev 139s libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 139s libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables 139s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 139s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 139s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 139s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblerc4 139s liblsan0 libltdl7 liblua5.4-0 liblzma-dev libmpc3 libmpfi0 libncurses-dev 139s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 139s libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 139s libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1 libreadline-dev 139s libsharpyuv0 libsm6 libstdc++-15-dev libsuitesparseconfig7 libsynctex2 139s libtcl8.6 libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 139s libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 libxcb-render0 139s libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6t64 139s libzstd-dev libzzip-0-13t64 linux-libc-dev node-bootstrap-sass 139s node-html5shiv node-normalize.css pandoc pandoc-data pkg-r-autopkgtest 139s pkgconf pkgconf-bin r-base-core r-base-dev r-bioc-biobase 139s r-bioc-biocgenerics r-bioc-biocstyle r-bioc-biocversion r-bioc-biomformat 139s r-bioc-biostrings r-bioc-decontam r-bioc-genomeinfodb 139s r-bioc-genomeinfodbdata r-bioc-iranges r-bioc-multtest r-bioc-phyloseq 139s r-bioc-s4vectors r-bioc-ucsc.utils r-bioc-xvector r-bioc-zlibbioc 139s r-cran-ade4 r-cran-ape r-cran-askpass r-cran-base64enc r-cran-biocmanager 139s r-cran-bookdown r-cran-bslib r-cran-cachem r-cran-cli r-cran-cluster 139s r-cran-codetools r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-curl 139s r-cran-data.table r-cran-digest r-cran-evaluate r-cran-farver r-cran-fastmap 139s r-cran-fontawesome r-cran-foreach r-cran-fs r-cran-ggplot2 r-cran-glue 139s r-cran-gtable r-cran-highr r-cran-htmltools r-cran-httpuv r-cran-httr 139s r-cran-igraph r-cran-isoband r-cran-iterators r-cran-jquerylib 139s r-cran-jsonlite r-cran-knitr r-cran-labeling r-cran-later r-cran-lattice 139s r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix 139s r-cran-memoise r-cran-mgcv r-cran-mime r-cran-nlme r-cran-openssl 139s r-cran-permute r-cran-pixmap r-cran-pkgconfig r-cran-pkgkitten r-cran-plyr 139s r-cran-promises r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp 139s r-cran-rcpparmadillo r-cran-reshape2 r-cran-rlang r-cran-rmarkdown r-cran-s7 139s r-cran-sass r-cran-scales r-cran-shiny r-cran-sourcetools r-cran-sp 139s r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys r-cran-tinytex 139s r-cran-vctrs r-cran-vegan r-cran-viridislite r-cran-withr r-cran-xfun 139s r-cran-xtable r-cran-yaml rpcsvc-proto t1utils tex-common texlive-base 139s texlive-bibtex-extra texlive-binaries texlive-latex-base unzip x11-common 139s xdg-utils zip zlib1g-dev 139s 0 upgraded, 256 newly installed, 0 to remove and 0 not upgraded. 139s Need to get 425 MB of archives. 139s After this operation, 1217 MB of additional disk space will be used. 139s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 libc-dev-bin arm64 2.42-2ubuntu4 [22.5 kB] 139s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 linux-libc-dev arm64 6.19.0-3.3 [1819 kB] 144s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 libcrypt-dev arm64 1:4.5.1-1 [123 kB] 144s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 rpcsvc-proto arm64 1.4.3-1build1 [65.6 kB] 144s Get:5 http://ftpmaster.internal/ubuntu resolute/main arm64 libc6-dev arm64 2.42-2ubuntu4 [1765 kB] 144s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 libisl23 arm64 0.27-1build1 [676 kB] 145s Get:7 http://ftpmaster.internal/ubuntu resolute/main arm64 libmpc3 arm64 1.3.1-2 [55.6 kB] 145s Get:8 http://ftpmaster.internal/ubuntu resolute/main arm64 cpp-15-aarch64-linux-gnu arm64 15.2.0-12ubuntu1 [11.7 MB] 163s Get:9 http://ftpmaster.internal/ubuntu resolute/main arm64 cpp-15 arm64 15.2.0-12ubuntu1 [1030 B] 163s Get:10 http://ftpmaster.internal/ubuntu resolute/main arm64 cpp-aarch64-linux-gnu arm64 4:15.2.0-4ubuntu1 [5736 B] 164s Get:11 http://ftpmaster.internal/ubuntu resolute/main arm64 cpp arm64 4:15.2.0-4ubuntu1 [22.4 kB] 164s Get:12 http://ftpmaster.internal/ubuntu resolute/main arm64 libcc1-0 arm64 15.2.0-12ubuntu1 [49.0 kB] 164s Get:13 http://ftpmaster.internal/ubuntu resolute/main arm64 libgomp1 arm64 15.2.0-12ubuntu1 [147 kB] 164s Get:14 http://ftpmaster.internal/ubuntu resolute/main arm64 libitm1 arm64 15.2.0-12ubuntu1 [27.8 kB] 164s Get:15 http://ftpmaster.internal/ubuntu resolute/main arm64 libasan8 arm64 15.2.0-12ubuntu1 [2920 kB] 168s Get:16 http://ftpmaster.internal/ubuntu resolute/main arm64 liblsan0 arm64 15.2.0-12ubuntu1 [1316 kB] 170s Get:17 http://ftpmaster.internal/ubuntu resolute/main arm64 libtsan2 arm64 15.2.0-12ubuntu1 [2688 kB] 174s Get:18 http://ftpmaster.internal/ubuntu resolute/main arm64 libubsan1 arm64 15.2.0-12ubuntu1 [1175 kB] 176s Get:19 http://ftpmaster.internal/ubuntu resolute/main arm64 libhwasan0 arm64 15.2.0-12ubuntu1 [1638 kB] 179s Get:20 http://ftpmaster.internal/ubuntu resolute/main arm64 libgcc-15-dev arm64 15.2.0-12ubuntu1 [2600 kB] 183s Get:21 http://ftpmaster.internal/ubuntu resolute/main arm64 gcc-15-aarch64-linux-gnu arm64 15.2.0-12ubuntu1 [23.1 MB] 223s Get:22 http://ftpmaster.internal/ubuntu resolute/main arm64 gcc-15 arm64 15.2.0-12ubuntu1 [519 kB] 224s Get:23 http://ftpmaster.internal/ubuntu resolute/main arm64 gcc-aarch64-linux-gnu arm64 4:15.2.0-4ubuntu1 [1206 B] 224s Get:24 http://ftpmaster.internal/ubuntu resolute/main arm64 gcc arm64 4:15.2.0-4ubuntu1 [5016 B] 224s Get:25 http://ftpmaster.internal/ubuntu resolute/main arm64 libstdc++-15-dev arm64 15.2.0-12ubuntu1 [2549 kB] 228s Get:26 http://ftpmaster.internal/ubuntu resolute/main arm64 g++-15-aarch64-linux-gnu arm64 15.2.0-12ubuntu1 [13.2 MB] 254s Get:27 http://ftpmaster.internal/ubuntu resolute/main arm64 g++-15 arm64 15.2.0-12ubuntu1 [25.3 kB] 254s Get:28 http://ftpmaster.internal/ubuntu resolute/main arm64 g++-aarch64-linux-gnu arm64 4:15.2.0-4ubuntu1 [956 B] 254s Get:29 http://ftpmaster.internal/ubuntu resolute/main arm64 g++ arm64 4:15.2.0-4ubuntu1 [1080 B] 254s Get:30 http://ftpmaster.internal/ubuntu resolute/main arm64 build-essential arm64 12.12ubuntu2 [5254 B] 254s Get:31 http://ftpmaster.internal/ubuntu resolute/main arm64 dctrl-tools arm64 2.24-3build4 [102 kB] 254s Get:32 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-mono all 2.37-8build1 [502 kB] 254s Get:33 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-core all 2.37-8build1 [834 kB] 255s Get:34 http://ftpmaster.internal/ubuntu resolute/main arm64 fontconfig-config arm64 2.17.1-3ubuntu1 [38.5 kB] 255s Get:35 http://ftpmaster.internal/ubuntu resolute/main arm64 libfontconfig1 arm64 2.17.1-3ubuntu1 [144 kB] 255s Get:36 http://ftpmaster.internal/ubuntu resolute/main arm64 fontconfig arm64 2.17.1-3ubuntu1 [181 kB] 255s Get:37 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1build1 [531 kB] 256s Get:38 http://ftpmaster.internal/ubuntu resolute/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-6 [119 kB] 256s Get:39 http://ftpmaster.internal/ubuntu resolute/universe arm64 fonts-lmodern all 2.005-1build1 [4788 kB] 264s Get:40 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-mathjax all 2.7.9+dfsg-1build1 [2283 kB] 269s Get:41 http://ftpmaster.internal/ubuntu resolute/main arm64 libgfortran5 arm64 15.2.0-12ubuntu1 [451 kB] 269s Get:42 http://ftpmaster.internal/ubuntu resolute/main arm64 libgfortran-15-dev arm64 15.2.0-12ubuntu1 [490 kB] 269s Get:43 http://ftpmaster.internal/ubuntu resolute/main arm64 gfortran-15-aarch64-linux-gnu arm64 15.2.0-12ubuntu1 [12.5 MB] 290s Get:44 http://ftpmaster.internal/ubuntu resolute/main arm64 gfortran-15 arm64 15.2.0-12ubuntu1 [18.1 kB] 290s Get:45 http://ftpmaster.internal/ubuntu resolute/main arm64 gfortran-aarch64-linux-gnu arm64 4:15.2.0-4ubuntu1 [1022 B] 290s Get:46 http://ftpmaster.internal/ubuntu resolute/main arm64 gfortran arm64 4:15.2.0-4ubuntu1 [1160 B] 290s Get:47 http://ftpmaster.internal/ubuntu resolute/main arm64 icu-devtools arm64 78.2-1ubuntu1 [207 kB] 290s Get:48 http://ftpmaster.internal/ubuntu resolute/main arm64 javascript-common all 12+nmu1build1 [4864 B] 290s Get:49 http://ftpmaster.internal/ubuntu resolute/main arm64 libsuitesparseconfig7 arm64 1:7.12.1+dfsg-1 [22.0 kB] 290s Get:50 http://ftpmaster.internal/ubuntu resolute/universe arm64 libamd3 arm64 1:7.12.1+dfsg-1 [34.6 kB] 290s Get:51 http://ftpmaster.internal/ubuntu resolute/main arm64 libio-string-perl all 1.08-4 [11.1 kB] 290s Get:52 http://ftpmaster.internal/ubuntu resolute/universe arm64 liblatex-tounicode-perl all 1.93-1 [29.2 kB] 290s Get:53 http://ftpmaster.internal/ubuntu resolute/universe arm64 libbibtex-parser-perl all 1.93+dfsg-1 [17.4 kB] 290s Get:54 http://ftpmaster.internal/ubuntu resolute/main arm64 libblas3 arm64 3.12.1-7ubuntu1 [181 kB] 290s Get:55 http://ftpmaster.internal/ubuntu resolute/main arm64 libblas-dev arm64 3.12.1-7ubuntu1 [160 kB] 290s Get:56 http://ftpmaster.internal/ubuntu resolute/main arm64 libbz2-dev arm64 1.0.8-6build2 [34.9 kB] 290s Get:57 http://ftpmaster.internal/ubuntu resolute/main arm64 libpixman-1-0 arm64 0.46.4-1 [204 kB] 290s Get:58 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-render0 arm64 1.17.0-2ubuntu1 [16.4 kB] 290s Get:59 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-shm0 arm64 1.17.0-2ubuntu1 [5938 B] 290s Get:60 http://ftpmaster.internal/ubuntu resolute/main arm64 libxrender1 arm64 1:0.9.12-1 [19.5 kB] 290s Get:61 http://ftpmaster.internal/ubuntu resolute/main arm64 libcairo2 arm64 1.18.4-3 [556 kB] 291s Get:62 http://ftpmaster.internal/ubuntu resolute/main arm64 libcolamd3 arm64 1:7.12.1+dfsg-1 [27.1 kB] 291s Get:63 http://ftpmaster.internal/ubuntu resolute/main arm64 libdatrie1 arm64 0.2.14-1 [19.6 kB] 291s Get:64 http://ftpmaster.internal/ubuntu resolute/main arm64 libdeflate0 arm64 1.23-2build1 [46.8 kB] 291s Get:65 http://ftpmaster.internal/ubuntu resolute/main arm64 libdeflate-dev arm64 1.23-2build1 [54.3 kB] 291s Get:66 http://ftpmaster.internal/ubuntu resolute/main arm64 libltdl7 arm64 2.5.4-9 [43.3 kB] 291s Get:67 http://ftpmaster.internal/ubuntu resolute/universe arm64 libglpk40 arm64 5.0-2 [347 kB] 291s Get:68 http://ftpmaster.internal/ubuntu resolute/main arm64 libgraphite2-3 arm64 1.3.14-11ubuntu1 [72.1 kB] 291s Get:69 http://ftpmaster.internal/ubuntu resolute/main arm64 libharfbuzz0b arm64 12.3.2-1 [510 kB] 291s Get:70 http://ftpmaster.internal/ubuntu resolute/main arm64 x11-common all 1:7.7+24ubuntu1 [22.4 kB] 291s Get:71 http://ftpmaster.internal/ubuntu resolute/main arm64 libice6 arm64 2:1.1.1-1build1 [43.0 kB] 291s Get:72 http://ftpmaster.internal/ubuntu resolute/main arm64 libicu-dev arm64 78.2-1ubuntu1 [12.5 MB] 313s Get:73 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg-turbo8 arm64 2.1.5-4ubuntu3 [161 kB] 313s Get:74 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg-turbo8-dev arm64 2.1.5-4ubuntu3 [301 kB] 313s Get:75 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 313s Get:76 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 313s Get:77 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 313s Get:78 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-bootstrap all 3.4.1+dfsg-6 [129 kB] 313s Get:79 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-popper.js all 1.16.1+ds-6build1 [53.8 kB] 313s Get:80 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-bootstrap4 all 4.6.2+dfsg-1 [532 kB] 314s Get:81 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-d3 all 3.5.17-4build1 [136 kB] 314s Get:82 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 314s Get:83 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-highlight.js all 10.7.3+dfsg-2 [144 kB] 314s Get:84 http://ftpmaster.internal/ubuntu resolute/main arm64 libjs-jquery all 3.7.1+dfsg+~3.5.33-1build1 [321 kB] 314s Get:85 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2build1 [145 kB] 314s Get:86 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 314s Get:87 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-2 [3946 B] 314s Get:88 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 314s Get:89 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1build1 [251 kB] 314s Get:90 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-json all 0~20221030+~1.0.8-1build1 [20.6 kB] 314s Get:91 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 314s Get:92 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-prettify all 2015.12.04+dfsg-3 [41.4 kB] 314s Get:93 http://ftpmaster.internal/ubuntu resolute/universe arm64 libkpathsea6 arm64 2025.20250727.75242+ds-5build1 [65.4 kB] 314s Get:94 http://ftpmaster.internal/ubuntu resolute/main arm64 liblapack3 arm64 3.12.1-7ubuntu1 [2299 kB] 318s Get:95 http://ftpmaster.internal/ubuntu resolute/main arm64 liblapack-dev arm64 3.12.1-7ubuntu1 [4456 kB] 325s Get:96 http://ftpmaster.internal/ubuntu resolute/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu2 [174 kB] 325s Get:97 http://ftpmaster.internal/ubuntu resolute/main arm64 liblua5.4-0 arm64 5.4.8-1 [171 kB] 325s Get:98 http://ftpmaster.internal/ubuntu resolute/universe arm64 libmpfi0 arm64 1.5.4+ds-4build1 [36.4 kB] 325s Get:99 http://ftpmaster.internal/ubuntu resolute/main arm64 libncurses-dev arm64 6.6+20251231-1 [391 kB] 325s Get:100 http://ftpmaster.internal/ubuntu resolute/main arm64 libthai-data all 0.1.30-1 [155 kB] 325s Get:101 http://ftpmaster.internal/ubuntu resolute/main arm64 libthai0 arm64 0.1.30-1 [18.3 kB] 325s Get:102 http://ftpmaster.internal/ubuntu resolute/main arm64 libpango-1.0-0 arm64 1.57.0-1 [238 kB] 325s Get:103 http://ftpmaster.internal/ubuntu resolute/main arm64 libpangoft2-1.0-0 arm64 1.57.0-1 [51.5 kB] 325s Get:104 http://ftpmaster.internal/ubuntu resolute/main arm64 libpangocairo-1.0-0 arm64 1.57.0-1 [27.9 kB] 325s Get:105 http://ftpmaster.internal/ubuntu resolute/main arm64 libpaper2 arm64 2.2.5-0.3build1 [17.3 kB] 325s Get:106 http://ftpmaster.internal/ubuntu resolute/main arm64 libpaper-utils arm64 2.2.5-0.3build1 [15.4 kB] 325s Get:107 http://ftpmaster.internal/ubuntu resolute/main arm64 libpcre2-16-0 arm64 10.46-1 [225 kB] 325s Get:108 http://ftpmaster.internal/ubuntu resolute/main arm64 libpcre2-32-0 arm64 10.46-1 [213 kB] 325s Get:109 http://ftpmaster.internal/ubuntu resolute/main arm64 libpcre2-posix3 arm64 10.46-1 [7300 B] 325s Get:110 http://ftpmaster.internal/ubuntu resolute/main arm64 libpcre2-dev arm64 10.46-1 [772 kB] 327s Get:111 http://ftpmaster.internal/ubuntu resolute/main arm64 libpkgconf3 arm64 1.8.1-4build1 [33.7 kB] 327s Get:112 http://ftpmaster.internal/ubuntu resolute/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu2 [899 kB] 328s Get:113 http://ftpmaster.internal/ubuntu resolute/main arm64 libpng-dev arm64 1.6.54-1 [268 kB] 328s Get:114 http://ftpmaster.internal/ubuntu resolute/universe arm64 libpotrace0 arm64 1.16-2build2 [16.3 kB] 328s Get:115 http://ftpmaster.internal/ubuntu resolute/universe arm64 libptexenc1 arm64 2025.20250727.75242+ds-5build1 [46.2 kB] 328s Get:116 http://ftpmaster.internal/ubuntu resolute/main arm64 libreadline-dev arm64 8.3-3 [199 kB] 328s Get:117 http://ftpmaster.internal/ubuntu resolute/main arm64 libsharpyuv0 arm64 1.5.0-0.1build1 [16.7 kB] 328s Get:118 http://ftpmaster.internal/ubuntu resolute/main arm64 libsm6 arm64 2:1.2.6-1build1 [16.8 kB] 328s Get:119 http://ftpmaster.internal/ubuntu resolute/universe arm64 libsynctex2 arm64 2025.20250727.75242+ds-5build1 [61.4 kB] 328s Get:120 http://ftpmaster.internal/ubuntu resolute/main arm64 libtcl8.6 arm64 8.6.17+dfsg-1build1 [983 kB] 330s Get:121 http://ftpmaster.internal/ubuntu resolute/universe arm64 libteckit0 arm64 2.5.13+ds-1 [393 kB] 330s Get:122 http://ftpmaster.internal/ubuntu resolute/universe arm64 libtexlua53-5 arm64 2025.20250727.75242+ds-5build1 [122 kB] 330s Get:123 http://ftpmaster.internal/ubuntu resolute/main arm64 libjbig0 arm64 2.1-6.1ubuntu3 [29.2 kB] 330s Get:124 http://ftpmaster.internal/ubuntu resolute/main arm64 libwebp7 arm64 1.5.0-0.1build1 [205 kB] 330s Get:125 http://ftpmaster.internal/ubuntu resolute/main arm64 libtiff6 arm64 4.7.0-3ubuntu3 [196 kB] 330s Get:126 http://ftpmaster.internal/ubuntu resolute/main arm64 libxft2 arm64 2.3.6-1build2 [43.2 kB] 330s Get:127 http://ftpmaster.internal/ubuntu resolute/main arm64 libxss1 arm64 1:1.2.3-1build4 [7102 B] 330s Get:128 http://ftpmaster.internal/ubuntu resolute/main arm64 libtk8.6 arm64 8.6.17-1 [811 kB] 331s Get:129 http://ftpmaster.internal/ubuntu resolute/main arm64 libxt6t64 arm64 1:1.2.1-1.3 [168 kB] 331s Get:130 http://ftpmaster.internal/ubuntu resolute/main arm64 libxmu6 arm64 2:1.1.3-4 [47.6 kB] 331s Get:131 http://ftpmaster.internal/ubuntu resolute/main arm64 libxpm4 arm64 1:3.5.17-1build3 [35.5 kB] 331s Get:132 http://ftpmaster.internal/ubuntu resolute/main arm64 libxaw7 arm64 2:1.0.16-1build1 [183 kB] 331s Get:133 http://ftpmaster.internal/ubuntu resolute/main arm64 libxi6 arm64 2:1.8.2-2 [32.4 kB] 331s Get:134 http://ftpmaster.internal/ubuntu resolute/main arm64 libzstd-dev arm64 1.5.7+dfsg-3 [349 kB] 332s Get:135 http://ftpmaster.internal/ubuntu resolute/universe arm64 libzzip-0-13t64 arm64 0.13.78+dfsg.1-0.2 [30.7 kB] 332s Get:136 http://ftpmaster.internal/ubuntu resolute/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 332s Get:137 http://ftpmaster.internal/ubuntu resolute/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 332s Get:138 http://ftpmaster.internal/ubuntu resolute/universe arm64 node-normalize.css all 8.0.1-5.1 [10.4 kB] 332s Get:139 http://ftpmaster.internal/ubuntu resolute/universe arm64 pandoc-data all 3.1.11.1-3build1 [78.8 kB] 332s Get:140 http://ftpmaster.internal/ubuntu resolute/universe arm64 pandoc arm64 3.1.11.1+ds-4 [28.0 MB] 381s Get:141 http://ftpmaster.internal/ubuntu resolute/main arm64 zip arm64 3.0-15ubuntu3 [170 kB] 381s Get:142 http://ftpmaster.internal/ubuntu resolute/main arm64 unzip arm64 6.0-29ubuntu1 [176 kB] 381s Get:143 http://ftpmaster.internal/ubuntu resolute/main arm64 xdg-utils all 1.2.1-2ubuntu2 [66.1 kB] 381s Get:144 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-base-core arm64 4.5.2-1ubuntu2 [28.6 MB] 435s Get:145 http://ftpmaster.internal/ubuntu resolute/main arm64 liblzma-dev arm64 5.8.2-2 [180 kB] 435s Get:146 http://ftpmaster.internal/ubuntu resolute/main arm64 pkgconf-bin arm64 1.8.1-4build1 [21.7 kB] 435s Get:147 http://ftpmaster.internal/ubuntu resolute/main arm64 pkgconf arm64 1.8.1-4build1 [16.8 kB] 435s Get:148 http://ftpmaster.internal/ubuntu resolute/main arm64 libtirpc-dev arm64 1.3.6+ds-1 [202 kB] 435s Get:149 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-base-dev all 4.5.2-1ubuntu2 [1880 B] 435s Get:150 http://ftpmaster.internal/ubuntu resolute/universe arm64 pkg-r-autopkgtest all 20250812 [6158 B] 435s Get:151 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-biocgenerics all 0.52.0-2 [624 kB] 437s Get:152 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-biobase arm64 2.66.0-2 [2331 kB] 441s Get:153 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-base64enc arm64 0.1-3-3build1 [28.5 kB] 441s Get:154 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-digest arm64 0.6.39-1 [196 kB] 441s Get:155 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-fastmap arm64 1.2.0-1 [70.6 kB] 441s Get:156 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rlang arm64 1.1.5-3 [1706 kB] 444s Get:157 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-htmltools arm64 0.5.8.1-1 [373 kB] 444s Get:158 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-evaluate all 1.0.5-1 [117 kB] 444s Get:159 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-xfun arm64 0.55+dfsg-1 [587 kB] 445s Get:160 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 445s Get:161 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-yaml arm64 2.3.10-1 [108 kB] 445s Get:162 http://ftpmaster.internal/ubuntu resolute/main arm64 libjs-mathjax all 2.7.9+dfsg-1build1 [6017 kB] 456s Get:163 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-knitr all 1.51+dfsg-1 [847 kB] 458s Get:164 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-cachem arm64 1.1.0-1 [74.1 kB] 458s Get:165 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-5 [13.7 kB] 458s Get:166 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-jsonlite arm64 1.9.1+dfsg-1 [445 kB] 458s Get:167 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-cli arm64 3.6.4-1 [1374 kB] 462s Get:168 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-lifecycle all 1.0.5+dfsg-1 [120 kB] 462s Get:169 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-memoise all 2.0.1-1build1 [54.5 kB] 462s Get:170 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-mime arm64 0.12-2 [35.8 kB] 462s Get:171 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-fs arm64 1.6.5+dfsg-1 [244 kB] 462s Get:172 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-r6 all 2.6.1-1 [101 kB] 462s Get:173 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rappdirs arm64 0.3.3-1build1 [49.5 kB] 462s Get:174 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-sass arm64 0.4.9+dfsg-1 [957 kB] 464s Get:175 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-bslib all 0.9.0+dfsg-3build1 [4560 kB] 477s Get:176 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-fontawesome all 0.5.3-1 [1331 kB] 481s Get:177 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-tinytex all 0.58-1 [148 kB] 481s Get:178 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-modernizr all 3.13.0-0.1build1 [100 kB] 481s Get:179 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-littler arm64 0.3.22-1 [85.1 kB] 481s Get:180 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 481s Get:181 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rcpp arm64 1.1.0-1 [2011 kB] 486s Get:182 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-later arm64 1.4.1+dfsg-1 [141 kB] 486s Get:183 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 486s Get:184 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-promises arm64 1.3.2+dfsg-1 [290 kB] 486s Get:185 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-httpuv arm64 1.6.15+dfsg-1 [489 kB] 486s Get:186 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-xtable all 1:1.8-4-2build1 [691 kB] 488s Get:187 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 488s Get:188 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-crayon all 1.5.3-1 [165 kB] 488s Get:189 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 488s Get:190 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-commonmark arm64 1.9.5-1 [130 kB] 488s Get:191 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-glue arm64 1.8.0-1 [163 kB] 488s Get:192 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 488s Get:193 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB] 495s Get:194 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rmarkdown all 2.30+dfsg-1 [1501 kB] 498s Get:195 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-bookdown all 0.42+dfsg-1 [1409 kB] 500s Get:196 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB] 500s Get:197 http://ftpmaster.internal/ubuntu resolute/universe arm64 tex-common all 6.20 [30.0 kB] 500s Get:198 http://ftpmaster.internal/ubuntu resolute/main arm64 t1utils arm64 1.41-4build4 [59.8 kB] 500s Get:199 http://ftpmaster.internal/ubuntu resolute/universe arm64 texlive-binaries arm64 2025.20250727.75242+ds-5build1 [8302 kB] 513s Get:200 http://ftpmaster.internal/ubuntu resolute/universe arm64 texlive-base all 2025.20260124-1 [22.8 MB] 551s Get:201 http://ftpmaster.internal/ubuntu resolute/universe arm64 texlive-latex-base all 2025.20260124-1 [1321 kB] 554s Get:202 http://ftpmaster.internal/ubuntu resolute/universe arm64 texlive-bibtex-extra all 2025.20260124-1 [80.6 MB] 694s Get:203 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-biocversion all 3.20.0-2 [11.1 kB] 694s Get:204 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-biocstyle all 2.34.0+dfsg-1 [451 kB] 694s Get:205 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-plyr arm64 1.8.9-1 [831 kB] 695s Get:206 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-lattice arm64 0.22-7-1 [1365 kB] 698s Get:207 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-matrix arm64 1.7-4-1 [4146 kB] 705s Get:208 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-biomformat all 1.34.0+dfsg-2 [229 kB] 705s Get:209 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-s4vectors arm64 0.44.0+dfsg-2 [2054 kB] 708s Get:210 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-iranges arm64 2.40.1-3 [2301 kB] 712s Get:211 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB] 713s Get:212 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-xvector arm64 0.46.0-2 [618 kB] 713s Get:213 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-curl arm64 7.0.0+dfsg-1 [202 kB] 713s Get:214 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-sys arm64 3.4.3-1 [45.2 kB] 713s Get:215 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-askpass arm64 1.2.1-1 [24.8 kB] 713s Get:216 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-openssl arm64 2.3.2+dfsg-1 [406 kB] 713s Get:217 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 713s Get:218 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-ucsc.utils all 1.2.0+ds-2 [77.2 kB] 713s Get:219 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB] 736s Get:220 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-genomeinfodb all 1.42.3+dfsg-1 [3887 kB] 743s Get:221 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-biostrings arm64 2.74.1+dfsg-2 [13.3 MB] 766s Get:222 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-gtable all 0.3.6+dfsg-1 [199 kB] 766s Get:223 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-isoband arm64 0.2.7-1 [1481 kB] 769s Get:224 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-s7 arm64 0.2.0-1 [329 kB] 770s Get:225 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-farver arm64 2.1.2-1 [1344 kB] 772s Get:226 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-labeling all 0.4.3-1 [62.1 kB] 772s Get:227 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build2 [54.0 kB] 772s Get:228 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-viridislite all 0.4.3-1 [1088 kB] 774s Get:229 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-scales all 1.4.0-1 [725 kB] 775s Get:230 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 778s Get:231 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 r-cran-ggplot2 all 4.0.2+dfsg-1 [4941 kB] 787s Get:232 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-stringi arm64 1.8.4-1build2 [901 kB] 789s Get:233 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB] 789s Get:234 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-reshape2 arm64 1.4.4-2build2 [118 kB] 789s Get:235 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-decontam all 1.26.0+dfsg-2 [212 kB] 789s Get:236 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-survival arm64 3.8-6-1 [8270 kB] 803s Get:237 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-mass arm64 7.3-65-1 [1109 kB] 811s Get:238 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-multtest arm64 2.62.0-2 [842 kB] 811s Get:239 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-pixmap all 0.4-14-1 [217 kB] 811s Get:240 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-sp arm64 1:2.2-0+dfsg-1 [1443 kB] 811s Get:241 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rcpparmadillo arm64 15.2.3-1-1 [916 kB] 811s Get:242 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-ade4 arm64 1.7-23-1 [5381 kB] 820s Get:243 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-nlme arm64 3.1.168-1 [2310 kB] 825s Get:244 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-ape arm64 5.8-1-1 [2901 kB] 832s Get:245 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-cluster arm64 2.1.8.2-1 [568 kB] 834s Get:246 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-data.table arm64 1.17.0+dfsg-1 [2129 kB] 839s Get:247 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-codetools all 0.2-20-1build1 [91.1 kB] 839s Get:248 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-iterators all 1.0.14-1build1 [336 kB] 839s Get:249 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-foreach all 1.5.2-1build1 [124 kB] 839s Get:250 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-pkgconfig all 2.0.3-2build2 [20.4 kB] 839s Get:251 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-cpp11 all 0.5.3-1 [242 kB] 839s Get:252 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-igraph arm64 2.1.4-1build1 [5151 kB] 849s Get:253 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-permute all 0.9-8-1 [237 kB] 849s Get:254 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-mgcv arm64 1.9-4-1 [3546 kB] 855s Get:255 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-vegan arm64 2.6-10+dfsg-3 [3134 kB] 861s Get:256 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-phyloseq all 1.50.0+dfsg-2 [2205 kB] 866s Preconfiguring packages ... 866s Fetched 425 MB in 12min 7s (585 kB/s) 866s Selecting previously unselected package libc-dev-bin. 866s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 136600 files and directories currently installed.) 866s Preparing to unpack .../000-libc-dev-bin_2.42-2ubuntu4_arm64.deb ... 866s Unpacking libc-dev-bin (2.42-2ubuntu4) ... 866s Selecting previously unselected package linux-libc-dev:arm64. 866s Preparing to unpack .../001-linux-libc-dev_6.19.0-3.3_arm64.deb ... 866s Unpacking linux-libc-dev:arm64 (6.19.0-3.3) ... 866s Selecting previously unselected package libcrypt-dev:arm64. 866s Preparing to unpack .../002-libcrypt-dev_1%3a4.5.1-1_arm64.deb ... 866s Unpacking libcrypt-dev:arm64 (1:4.5.1-1) ... 866s Selecting previously unselected package rpcsvc-proto. 866s Preparing to unpack .../003-rpcsvc-proto_1.4.3-1build1_arm64.deb ... 866s Unpacking rpcsvc-proto (1.4.3-1build1) ... 866s Selecting previously unselected package libc6-dev:arm64. 866s Preparing to unpack .../004-libc6-dev_2.42-2ubuntu4_arm64.deb ... 866s Unpacking libc6-dev:arm64 (2.42-2ubuntu4) ... 866s Selecting previously unselected package libisl23:arm64. 866s Preparing to unpack .../005-libisl23_0.27-1build1_arm64.deb ... 866s Unpacking libisl23:arm64 (0.27-1build1) ... 867s Selecting previously unselected package libmpc3:arm64. 867s Preparing to unpack .../006-libmpc3_1.3.1-2_arm64.deb ... 867s Unpacking libmpc3:arm64 (1.3.1-2) ... 867s Selecting previously unselected package cpp-15-aarch64-linux-gnu. 867s Preparing to unpack .../007-cpp-15-aarch64-linux-gnu_15.2.0-12ubuntu1_arm64.deb ... 867s Unpacking cpp-15-aarch64-linux-gnu (15.2.0-12ubuntu1) ... 867s Selecting previously unselected package cpp-15. 867s Preparing to unpack .../008-cpp-15_15.2.0-12ubuntu1_arm64.deb ... 867s Unpacking cpp-15 (15.2.0-12ubuntu1) ... 867s Selecting previously unselected package cpp-aarch64-linux-gnu. 867s Preparing to unpack .../009-cpp-aarch64-linux-gnu_4%3a15.2.0-4ubuntu1_arm64.deb ... 867s Unpacking cpp-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 867s Selecting previously unselected package cpp. 867s Preparing to unpack .../010-cpp_4%3a15.2.0-4ubuntu1_arm64.deb ... 867s Unpacking cpp (4:15.2.0-4ubuntu1) ... 867s Selecting previously unselected package libcc1-0:arm64. 867s Preparing to unpack .../011-libcc1-0_15.2.0-12ubuntu1_arm64.deb ... 867s Unpacking libcc1-0:arm64 (15.2.0-12ubuntu1) ... 867s Selecting previously unselected package libgomp1:arm64. 867s Preparing to unpack .../012-libgomp1_15.2.0-12ubuntu1_arm64.deb ... 867s Unpacking libgomp1:arm64 (15.2.0-12ubuntu1) ... 867s Selecting previously unselected package libitm1:arm64. 867s Preparing to unpack .../013-libitm1_15.2.0-12ubuntu1_arm64.deb ... 867s Unpacking libitm1:arm64 (15.2.0-12ubuntu1) ... 867s Selecting previously unselected package libasan8:arm64. 867s Preparing to unpack .../014-libasan8_15.2.0-12ubuntu1_arm64.deb ... 867s Unpacking libasan8:arm64 (15.2.0-12ubuntu1) ... 867s Selecting previously unselected package liblsan0:arm64. 867s Preparing to unpack .../015-liblsan0_15.2.0-12ubuntu1_arm64.deb ... 867s Unpacking liblsan0:arm64 (15.2.0-12ubuntu1) ... 867s Selecting previously unselected package libtsan2:arm64. 867s Preparing to unpack .../016-libtsan2_15.2.0-12ubuntu1_arm64.deb ... 867s Unpacking libtsan2:arm64 (15.2.0-12ubuntu1) ... 867s Selecting previously unselected package libubsan1:arm64. 867s Preparing to unpack .../017-libubsan1_15.2.0-12ubuntu1_arm64.deb ... 867s Unpacking libubsan1:arm64 (15.2.0-12ubuntu1) ... 867s Selecting previously unselected package libhwasan0:arm64. 867s Preparing to unpack .../018-libhwasan0_15.2.0-12ubuntu1_arm64.deb ... 867s Unpacking libhwasan0:arm64 (15.2.0-12ubuntu1) ... 867s Selecting previously unselected package libgcc-15-dev:arm64. 867s Preparing to unpack .../019-libgcc-15-dev_15.2.0-12ubuntu1_arm64.deb ... 867s Unpacking libgcc-15-dev:arm64 (15.2.0-12ubuntu1) ... 868s Selecting previously unselected package gcc-15-aarch64-linux-gnu. 868s Preparing to unpack .../020-gcc-15-aarch64-linux-gnu_15.2.0-12ubuntu1_arm64.deb ... 868s Unpacking gcc-15-aarch64-linux-gnu (15.2.0-12ubuntu1) ... 868s Selecting previously unselected package gcc-15. 868s Preparing to unpack .../021-gcc-15_15.2.0-12ubuntu1_arm64.deb ... 868s Unpacking gcc-15 (15.2.0-12ubuntu1) ... 868s Selecting previously unselected package gcc-aarch64-linux-gnu. 868s Preparing to unpack .../022-gcc-aarch64-linux-gnu_4%3a15.2.0-4ubuntu1_arm64.deb ... 868s Unpacking gcc-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 868s Selecting previously unselected package gcc. 868s Preparing to unpack .../023-gcc_4%3a15.2.0-4ubuntu1_arm64.deb ... 868s Unpacking gcc (4:15.2.0-4ubuntu1) ... 868s Selecting previously unselected package libstdc++-15-dev:arm64. 868s Preparing to unpack .../024-libstdc++-15-dev_15.2.0-12ubuntu1_arm64.deb ... 868s Unpacking libstdc++-15-dev:arm64 (15.2.0-12ubuntu1) ... 868s Selecting previously unselected package g++-15-aarch64-linux-gnu. 868s Preparing to unpack .../025-g++-15-aarch64-linux-gnu_15.2.0-12ubuntu1_arm64.deb ... 868s Unpacking g++-15-aarch64-linux-gnu (15.2.0-12ubuntu1) ... 869s Selecting previously unselected package g++-15. 869s Preparing to unpack .../026-g++-15_15.2.0-12ubuntu1_arm64.deb ... 869s Unpacking g++-15 (15.2.0-12ubuntu1) ... 869s Selecting previously unselected package g++-aarch64-linux-gnu. 869s Preparing to unpack .../027-g++-aarch64-linux-gnu_4%3a15.2.0-4ubuntu1_arm64.deb ... 869s Unpacking g++-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 869s Selecting previously unselected package g++. 869s Preparing to unpack .../028-g++_4%3a15.2.0-4ubuntu1_arm64.deb ... 869s Unpacking g++ (4:15.2.0-4ubuntu1) ... 869s Selecting previously unselected package build-essential. 869s Preparing to unpack .../029-build-essential_12.12ubuntu2_arm64.deb ... 869s Unpacking build-essential (12.12ubuntu2) ... 869s Selecting previously unselected package dctrl-tools. 869s Preparing to unpack .../030-dctrl-tools_2.24-3build4_arm64.deb ... 869s Unpacking dctrl-tools (2.24-3build4) ... 869s Selecting previously unselected package fonts-dejavu-mono. 869s Preparing to unpack .../031-fonts-dejavu-mono_2.37-8build1_all.deb ... 869s Unpacking fonts-dejavu-mono (2.37-8build1) ... 869s Selecting previously unselected package fonts-dejavu-core. 869s Preparing to unpack .../032-fonts-dejavu-core_2.37-8build1_all.deb ... 869s Unpacking fonts-dejavu-core (2.37-8build1) ... 869s Selecting previously unselected package fontconfig-config. 869s Preparing to unpack .../033-fontconfig-config_2.17.1-3ubuntu1_arm64.deb ... 869s Unpacking fontconfig-config (2.17.1-3ubuntu1) ... 869s Selecting previously unselected package libfontconfig1:arm64. 869s Preparing to unpack .../034-libfontconfig1_2.17.1-3ubuntu1_arm64.deb ... 869s Unpacking libfontconfig1:arm64 (2.17.1-3ubuntu1) ... 869s Selecting previously unselected package fontconfig. 869s Preparing to unpack .../035-fontconfig_2.17.1-3ubuntu1_arm64.deb ... 869s Unpacking fontconfig (2.17.1-3ubuntu1) ... 869s Selecting previously unselected package fonts-font-awesome. 869s Preparing to unpack .../036-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1build1_all.deb ... 869s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1build1) ... 869s Selecting previously unselected package fonts-glyphicons-halflings. 869s Preparing to unpack .../037-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-6_all.deb ... 869s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-6) ... 869s Selecting previously unselected package fonts-lmodern. 869s Preparing to unpack .../038-fonts-lmodern_2.005-1build1_all.deb ... 869s Unpacking fonts-lmodern (2.005-1build1) ... 870s Selecting previously unselected package fonts-mathjax. 870s Preparing to unpack .../039-fonts-mathjax_2.7.9+dfsg-1build1_all.deb ... 870s Unpacking fonts-mathjax (2.7.9+dfsg-1build1) ... 870s Selecting previously unselected package libgfortran5:arm64. 870s Preparing to unpack .../040-libgfortran5_15.2.0-12ubuntu1_arm64.deb ... 870s Unpacking libgfortran5:arm64 (15.2.0-12ubuntu1) ... 870s Selecting previously unselected package libgfortran-15-dev:arm64. 870s Preparing to unpack .../041-libgfortran-15-dev_15.2.0-12ubuntu1_arm64.deb ... 870s Unpacking libgfortran-15-dev:arm64 (15.2.0-12ubuntu1) ... 870s Selecting previously unselected package gfortran-15-aarch64-linux-gnu. 870s Preparing to unpack .../042-gfortran-15-aarch64-linux-gnu_15.2.0-12ubuntu1_arm64.deb ... 870s Unpacking gfortran-15-aarch64-linux-gnu (15.2.0-12ubuntu1) ... 870s Selecting previously unselected package gfortran-15. 870s Preparing to unpack .../043-gfortran-15_15.2.0-12ubuntu1_arm64.deb ... 870s Unpacking gfortran-15 (15.2.0-12ubuntu1) ... 870s Selecting previously unselected package gfortran-aarch64-linux-gnu. 870s Preparing to unpack .../044-gfortran-aarch64-linux-gnu_4%3a15.2.0-4ubuntu1_arm64.deb ... 870s Unpacking gfortran-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 870s Selecting previously unselected package gfortran. 870s Preparing to unpack .../045-gfortran_4%3a15.2.0-4ubuntu1_arm64.deb ... 870s Unpacking gfortran (4:15.2.0-4ubuntu1) ... 870s Selecting previously unselected package icu-devtools. 870s Preparing to unpack .../046-icu-devtools_78.2-1ubuntu1_arm64.deb ... 870s Unpacking icu-devtools (78.2-1ubuntu1) ... 870s Selecting previously unselected package javascript-common. 870s Preparing to unpack .../047-javascript-common_12+nmu1build1_all.deb ... 870s Unpacking javascript-common (12+nmu1build1) ... 870s Selecting previously unselected package libsuitesparseconfig7:arm64. 870s Preparing to unpack .../048-libsuitesparseconfig7_1%3a7.12.1+dfsg-1_arm64.deb ... 870s Unpacking libsuitesparseconfig7:arm64 (1:7.12.1+dfsg-1) ... 870s Selecting previously unselected package libamd3:arm64. 870s Preparing to unpack .../049-libamd3_1%3a7.12.1+dfsg-1_arm64.deb ... 870s Unpacking libamd3:arm64 (1:7.12.1+dfsg-1) ... 870s Selecting previously unselected package libio-string-perl. 870s Preparing to unpack .../050-libio-string-perl_1.08-4_all.deb ... 870s Unpacking libio-string-perl (1.08-4) ... 870s Selecting previously unselected package liblatex-tounicode-perl. 870s Preparing to unpack .../051-liblatex-tounicode-perl_1.93-1_all.deb ... 870s Unpacking liblatex-tounicode-perl (1.93-1) ... 870s Selecting previously unselected package libbibtex-parser-perl. 870s Preparing to unpack .../052-libbibtex-parser-perl_1.93+dfsg-1_all.deb ... 870s Unpacking libbibtex-parser-perl (1.93+dfsg-1) ... 870s Selecting previously unselected package libblas3:arm64. 870s Preparing to unpack .../053-libblas3_3.12.1-7ubuntu1_arm64.deb ... 870s Unpacking libblas3:arm64 (3.12.1-7ubuntu1) ... 870s Selecting previously unselected package libblas-dev:arm64. 870s Preparing to unpack .../054-libblas-dev_3.12.1-7ubuntu1_arm64.deb ... 870s Unpacking libblas-dev:arm64 (3.12.1-7ubuntu1) ... 871s Selecting previously unselected package libbz2-dev:arm64. 871s Preparing to unpack .../055-libbz2-dev_1.0.8-6build2_arm64.deb ... 871s Unpacking libbz2-dev:arm64 (1.0.8-6build2) ... 871s Selecting previously unselected package libpixman-1-0:arm64. 871s Preparing to unpack .../056-libpixman-1-0_0.46.4-1_arm64.deb ... 871s Unpacking libpixman-1-0:arm64 (0.46.4-1) ... 871s Selecting previously unselected package libxcb-render0:arm64. 871s Preparing to unpack .../057-libxcb-render0_1.17.0-2ubuntu1_arm64.deb ... 871s Unpacking libxcb-render0:arm64 (1.17.0-2ubuntu1) ... 871s Selecting previously unselected package libxcb-shm0:arm64. 871s Preparing to unpack .../058-libxcb-shm0_1.17.0-2ubuntu1_arm64.deb ... 871s Unpacking libxcb-shm0:arm64 (1.17.0-2ubuntu1) ... 871s Selecting previously unselected package libxrender1:arm64. 871s Preparing to unpack .../059-libxrender1_1%3a0.9.12-1_arm64.deb ... 871s Unpacking libxrender1:arm64 (1:0.9.12-1) ... 871s Selecting previously unselected package libcairo2:arm64. 871s Preparing to unpack .../060-libcairo2_1.18.4-3_arm64.deb ... 871s Unpacking libcairo2:arm64 (1.18.4-3) ... 871s Selecting previously unselected package libcolamd3:arm64. 871s Preparing to unpack .../061-libcolamd3_1%3a7.12.1+dfsg-1_arm64.deb ... 871s Unpacking libcolamd3:arm64 (1:7.12.1+dfsg-1) ... 871s Selecting previously unselected package libdatrie1:arm64. 871s Preparing to unpack .../062-libdatrie1_0.2.14-1_arm64.deb ... 871s Unpacking libdatrie1:arm64 (0.2.14-1) ... 871s Selecting previously unselected package libdeflate0:arm64. 871s Preparing to unpack .../063-libdeflate0_1.23-2build1_arm64.deb ... 871s Unpacking libdeflate0:arm64 (1.23-2build1) ... 871s Selecting previously unselected package libdeflate-dev:arm64. 871s Preparing to unpack .../064-libdeflate-dev_1.23-2build1_arm64.deb ... 871s Unpacking libdeflate-dev:arm64 (1.23-2build1) ... 871s Selecting previously unselected package libltdl7:arm64. 871s Preparing to unpack .../065-libltdl7_2.5.4-9_arm64.deb ... 871s Unpacking libltdl7:arm64 (2.5.4-9) ... 871s Selecting previously unselected package libglpk40:arm64. 871s Preparing to unpack .../066-libglpk40_5.0-2_arm64.deb ... 871s Unpacking libglpk40:arm64 (5.0-2) ... 871s Selecting previously unselected package libgraphite2-3:arm64. 871s Preparing to unpack .../067-libgraphite2-3_1.3.14-11ubuntu1_arm64.deb ... 871s Unpacking libgraphite2-3:arm64 (1.3.14-11ubuntu1) ... 871s Selecting previously unselected package libharfbuzz0b:arm64. 871s Preparing to unpack .../068-libharfbuzz0b_12.3.2-1_arm64.deb ... 871s Unpacking libharfbuzz0b:arm64 (12.3.2-1) ... 871s Selecting previously unselected package x11-common. 871s Preparing to unpack .../069-x11-common_1%3a7.7+24ubuntu1_all.deb ... 871s Unpacking x11-common (1:7.7+24ubuntu1) ... 871s Selecting previously unselected package libice6:arm64. 871s Preparing to unpack .../070-libice6_2%3a1.1.1-1build1_arm64.deb ... 871s Unpacking libice6:arm64 (2:1.1.1-1build1) ... 871s Selecting previously unselected package libicu-dev:arm64. 871s Preparing to unpack .../071-libicu-dev_78.2-1ubuntu1_arm64.deb ... 871s Unpacking libicu-dev:arm64 (78.2-1ubuntu1) ... 872s Selecting previously unselected package libjpeg-turbo8:arm64. 872s Preparing to unpack .../072-libjpeg-turbo8_2.1.5-4ubuntu3_arm64.deb ... 872s Unpacking libjpeg-turbo8:arm64 (2.1.5-4ubuntu3) ... 872s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 872s Preparing to unpack .../073-libjpeg-turbo8-dev_2.1.5-4ubuntu3_arm64.deb ... 872s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-4ubuntu3) ... 872s Selecting previously unselected package libjpeg8:arm64. 872s Preparing to unpack .../074-libjpeg8_8c-2ubuntu11_arm64.deb ... 872s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 872s Selecting previously unselected package libjpeg8-dev:arm64. 872s Preparing to unpack .../075-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 872s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 872s Selecting previously unselected package libjpeg-dev:arm64. 872s Preparing to unpack .../076-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 872s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 872s Selecting previously unselected package libjs-bootstrap. 872s Preparing to unpack .../077-libjs-bootstrap_3.4.1+dfsg-6_all.deb ... 872s Unpacking libjs-bootstrap (3.4.1+dfsg-6) ... 872s Selecting previously unselected package libjs-popper.js. 872s Preparing to unpack .../078-libjs-popper.js_1.16.1+ds-6build1_all.deb ... 872s Unpacking libjs-popper.js (1.16.1+ds-6build1) ... 872s Selecting previously unselected package libjs-bootstrap4. 872s Preparing to unpack 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libreadline-dev:arm64. 874s Preparing to unpack .../115-libreadline-dev_8.3-3_arm64.deb ... 874s Unpacking libreadline-dev:arm64 (8.3-3) ... 874s Selecting previously unselected package libsharpyuv0:arm64. 874s Preparing to unpack .../116-libsharpyuv0_1.5.0-0.1build1_arm64.deb ... 874s Unpacking libsharpyuv0:arm64 (1.5.0-0.1build1) ... 874s Selecting previously unselected package libsm6:arm64. 874s Preparing to unpack .../117-libsm6_2%3a1.2.6-1build1_arm64.deb ... 874s Unpacking libsm6:arm64 (2:1.2.6-1build1) ... 874s Selecting previously unselected package libsynctex2:arm64. 874s Preparing to unpack .../118-libsynctex2_2025.20250727.75242+ds-5build1_arm64.deb ... 874s Unpacking libsynctex2:arm64 (2025.20250727.75242+ds-5build1) ... 874s Selecting previously unselected package libtcl8.6:arm64. 874s Preparing to unpack .../119-libtcl8.6_8.6.17+dfsg-1build1_arm64.deb ... 874s Unpacking libtcl8.6:arm64 (8.6.17+dfsg-1build1) ... 874s Selecting previously unselected package libteckit0:arm64. 874s Preparing to unpack .../120-libteckit0_2.5.13+ds-1_arm64.deb ... 874s Unpacking libteckit0:arm64 (2.5.13+ds-1) ... 874s Selecting previously unselected package libtexlua53-5:arm64. 874s Preparing to unpack .../121-libtexlua53-5_2025.20250727.75242+ds-5build1_arm64.deb ... 874s Unpacking libtexlua53-5:arm64 (2025.20250727.75242+ds-5build1) ... 874s Selecting previously unselected package libjbig0:arm64. 874s Preparing to unpack .../122-libjbig0_2.1-6.1ubuntu3_arm64.deb ... 874s Unpacking libjbig0:arm64 (2.1-6.1ubuntu3) ... 874s Selecting previously unselected package libwebp7:arm64. 874s Preparing to unpack .../123-libwebp7_1.5.0-0.1build1_arm64.deb ... 874s Unpacking libwebp7:arm64 (1.5.0-0.1build1) ... 874s Selecting previously unselected package libtiff6:arm64. 874s Preparing to unpack .../124-libtiff6_4.7.0-3ubuntu3_arm64.deb ... 874s Unpacking libtiff6:arm64 (4.7.0-3ubuntu3) ... 874s Selecting previously unselected package libxft2:arm64. 875s Preparing to unpack .../125-libxft2_2.3.6-1build2_arm64.deb ... 875s Unpacking libxft2:arm64 (2.3.6-1build2) ... 875s Selecting previously unselected package libxss1:arm64. 875s Preparing to unpack .../126-libxss1_1%3a1.2.3-1build4_arm64.deb ... 875s Unpacking libxss1:arm64 (1:1.2.3-1build4) ... 875s Selecting previously unselected package libtk8.6:arm64. 875s Preparing to unpack .../127-libtk8.6_8.6.17-1_arm64.deb ... 875s Unpacking libtk8.6:arm64 (8.6.17-1) ... 875s Selecting previously unselected package libxt6t64:arm64. 875s Preparing to unpack .../128-libxt6t64_1%3a1.2.1-1.3_arm64.deb ... 875s Unpacking libxt6t64:arm64 (1:1.2.1-1.3) ... 875s Selecting previously unselected package libxmu6:arm64. 875s Preparing to unpack .../129-libxmu6_2%3a1.1.3-4_arm64.deb ... 875s Unpacking libxmu6:arm64 (2:1.1.3-4) ... 875s Selecting previously unselected package libxpm4:arm64. 875s Preparing to unpack .../130-libxpm4_1%3a3.5.17-1build3_arm64.deb ... 875s Unpacking libxpm4:arm64 (1:3.5.17-1build3) ... 875s Selecting previously unselected package libxaw7:arm64. 875s Preparing to unpack .../131-libxaw7_2%3a1.0.16-1build1_arm64.deb ... 875s Unpacking libxaw7:arm64 (2:1.0.16-1build1) ... 875s Selecting previously unselected package libxi6:arm64. 875s Preparing to unpack .../132-libxi6_2%3a1.8.2-2_arm64.deb ... 875s Unpacking libxi6:arm64 (2:1.8.2-2) ... 875s Selecting previously unselected package libzstd-dev:arm64. 875s Preparing to unpack .../133-libzstd-dev_1.5.7+dfsg-3_arm64.deb ... 875s Unpacking libzstd-dev:arm64 (1.5.7+dfsg-3) ... 875s Selecting previously unselected package libzzip-0-13t64:arm64. 875s Preparing to unpack .../134-libzzip-0-13t64_0.13.78+dfsg.1-0.2_arm64.deb ... 875s Unpacking libzzip-0-13t64:arm64 (0.13.78+dfsg.1-0.2) ... 875s Selecting previously unselected package node-bootstrap-sass. 875s Preparing to unpack .../135-node-bootstrap-sass_3.4.3-2_all.deb ... 875s Unpacking node-bootstrap-sass (3.4.3-2) ... 875s Selecting previously unselected package node-html5shiv. 875s Preparing to unpack .../136-node-html5shiv_3.7.3+dfsg-5_all.deb ... 875s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 875s Selecting previously unselected package node-normalize.css. 875s Preparing to unpack .../137-node-normalize.css_8.0.1-5.1_all.deb ... 875s Unpacking node-normalize.css (8.0.1-5.1) ... 875s Selecting previously unselected package pandoc-data. 875s Preparing to unpack .../138-pandoc-data_3.1.11.1-3build1_all.deb ... 875s Unpacking pandoc-data (3.1.11.1-3build1) ... 875s Selecting previously unselected package pandoc. 875s Preparing to unpack .../139-pandoc_3.1.11.1+ds-4_arm64.deb ... 875s Unpacking pandoc (3.1.11.1+ds-4) ... 876s Selecting previously unselected package zip. 876s Preparing to unpack .../140-zip_3.0-15ubuntu3_arm64.deb ... 876s Unpacking zip (3.0-15ubuntu3) ... 876s Selecting previously unselected package unzip. 876s Preparing to unpack .../141-unzip_6.0-29ubuntu1_arm64.deb ... 876s Unpacking unzip (6.0-29ubuntu1) ... 876s Selecting previously unselected package xdg-utils. 876s Preparing to unpack .../142-xdg-utils_1.2.1-2ubuntu2_all.deb ... 876s Unpacking xdg-utils (1.2.1-2ubuntu2) ... 876s Selecting previously unselected package r-base-core. 876s Preparing to unpack .../143-r-base-core_4.5.2-1ubuntu2_arm64.deb ... 876s Unpacking r-base-core (4.5.2-1ubuntu2) ... 877s Selecting previously unselected package liblzma-dev:arm64. 877s Preparing to unpack .../144-liblzma-dev_5.8.2-2_arm64.deb ... 877s Unpacking liblzma-dev:arm64 (5.8.2-2) ... 877s Selecting previously unselected package pkgconf-bin. 877s Preparing to unpack .../145-pkgconf-bin_1.8.1-4build1_arm64.deb ... 877s Unpacking pkgconf-bin (1.8.1-4build1) ... 877s Selecting previously unselected package pkgconf:arm64. 877s Preparing to unpack .../146-pkgconf_1.8.1-4build1_arm64.deb ... 877s Unpacking pkgconf:arm64 (1.8.1-4build1) ... 877s Selecting previously unselected package libtirpc-dev:arm64. 877s Preparing to unpack .../147-libtirpc-dev_1.3.6+ds-1_arm64.deb ... 877s Unpacking libtirpc-dev:arm64 (1.3.6+ds-1) ... 877s Selecting previously unselected package r-base-dev. 877s Preparing to unpack .../148-r-base-dev_4.5.2-1ubuntu2_all.deb ... 877s Unpacking r-base-dev (4.5.2-1ubuntu2) ... 877s Selecting previously unselected package pkg-r-autopkgtest. 877s Preparing to unpack .../149-pkg-r-autopkgtest_20250812_all.deb ... 877s Unpacking pkg-r-autopkgtest (20250812) ... 877s Selecting previously unselected package r-bioc-biocgenerics. 877s Preparing to unpack .../150-r-bioc-biocgenerics_0.52.0-2_all.deb ... 877s Unpacking r-bioc-biocgenerics (0.52.0-2) ... 877s Selecting previously unselected package r-bioc-biobase. 877s Preparing to unpack .../151-r-bioc-biobase_2.66.0-2_arm64.deb ... 877s Unpacking r-bioc-biobase (2.66.0-2) ... 877s Selecting previously unselected package r-cran-base64enc. 877s Preparing to unpack .../152-r-cran-base64enc_0.1-3-3build1_arm64.deb ... 877s Unpacking r-cran-base64enc (0.1-3-3build1) ... 877s Selecting previously unselected package r-cran-digest. 877s Preparing to unpack .../153-r-cran-digest_0.6.39-1_arm64.deb ... 877s Unpacking r-cran-digest (0.6.39-1) ... 877s Selecting previously unselected package r-cran-fastmap. 877s Preparing to unpack .../154-r-cran-fastmap_1.2.0-1_arm64.deb ... 877s Unpacking r-cran-fastmap (1.2.0-1) ... 877s Selecting previously unselected package r-cran-rlang. 877s Preparing to unpack .../155-r-cran-rlang_1.1.5-3_arm64.deb ... 877s Unpacking r-cran-rlang (1.1.5-3) ... 877s Selecting previously unselected package r-cran-htmltools. 877s Preparing to unpack .../156-r-cran-htmltools_0.5.8.1-1_arm64.deb ... 877s Unpacking r-cran-htmltools (0.5.8.1-1) ... 877s Selecting previously unselected package r-cran-evaluate. 877s Preparing to unpack .../157-r-cran-evaluate_1.0.5-1_all.deb ... 877s Unpacking r-cran-evaluate (1.0.5-1) ... 877s Selecting previously unselected package r-cran-xfun. 877s Preparing to unpack .../158-r-cran-xfun_0.55+dfsg-1_arm64.deb ... 877s Unpacking r-cran-xfun (0.55+dfsg-1) ... 877s Selecting previously unselected package r-cran-highr. 877s Preparing to unpack .../159-r-cran-highr_0.11+dfsg-1_all.deb ... 877s Unpacking r-cran-highr (0.11+dfsg-1) ... 877s Selecting previously unselected package r-cran-yaml. 877s Preparing to unpack .../160-r-cran-yaml_2.3.10-1_arm64.deb ... 877s Unpacking r-cran-yaml (2.3.10-1) ... 877s Selecting previously unselected package libjs-mathjax. 877s Preparing to unpack .../161-libjs-mathjax_2.7.9+dfsg-1build1_all.deb ... 877s Unpacking libjs-mathjax (2.7.9+dfsg-1build1) ... 878s Selecting previously unselected package r-cran-knitr. 878s Preparing to unpack .../162-r-cran-knitr_1.51+dfsg-1_all.deb ... 878s Unpacking r-cran-knitr (1.51+dfsg-1) ... 878s Selecting previously unselected package r-cran-cachem. 878s Preparing to unpack .../163-r-cran-cachem_1.1.0-1_arm64.deb ... 878s Unpacking r-cran-cachem (1.1.0-1) ... 878s Selecting previously unselected package r-cran-jquerylib. 878s Preparing to unpack .../164-r-cran-jquerylib_0.1.4+dfsg-5_all.deb ... 878s Unpacking r-cran-jquerylib (0.1.4+dfsg-5) ... 878s Selecting previously unselected package r-cran-jsonlite. 878s Preparing to unpack .../165-r-cran-jsonlite_1.9.1+dfsg-1_arm64.deb ... 878s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ... 878s Selecting previously unselected package r-cran-cli. 878s Preparing to unpack .../166-r-cran-cli_3.6.4-1_arm64.deb ... 878s Unpacking r-cran-cli (3.6.4-1) ... 878s Selecting previously unselected package r-cran-lifecycle. 878s Preparing to unpack .../167-r-cran-lifecycle_1.0.5+dfsg-1_all.deb ... 878s Unpacking r-cran-lifecycle (1.0.5+dfsg-1) ... 878s Selecting previously unselected package r-cran-memoise. 878s Preparing to unpack .../168-r-cran-memoise_2.0.1-1build1_all.deb ... 878s Unpacking r-cran-memoise (2.0.1-1build1) ... 878s Selecting previously unselected package r-cran-mime. 878s Preparing to unpack .../169-r-cran-mime_0.12-2_arm64.deb ... 878s Unpacking r-cran-mime (0.12-2) ... 878s Selecting previously unselected package r-cran-fs. 878s Preparing to unpack .../170-r-cran-fs_1.6.5+dfsg-1_arm64.deb ... 878s Unpacking r-cran-fs (1.6.5+dfsg-1) ... 878s Selecting previously unselected package r-cran-r6. 878s Preparing to unpack .../171-r-cran-r6_2.6.1-1_all.deb ... 878s Unpacking r-cran-r6 (2.6.1-1) ... 878s Selecting previously unselected package r-cran-rappdirs. 878s Preparing to unpack .../172-r-cran-rappdirs_0.3.3-1build1_arm64.deb ... 878s Unpacking r-cran-rappdirs (0.3.3-1build1) ... 878s Selecting previously unselected package r-cran-sass. 878s Preparing to unpack .../173-r-cran-sass_0.4.9+dfsg-1_arm64.deb ... 878s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 878s Selecting previously unselected package r-cran-bslib. 878s Preparing to unpack .../174-r-cran-bslib_0.9.0+dfsg-3build1_all.deb ... 878s Unpacking r-cran-bslib (0.9.0+dfsg-3build1) ... 879s Selecting previously unselected package r-cran-fontawesome. 879s Preparing to unpack .../175-r-cran-fontawesome_0.5.3-1_all.deb ... 879s Unpacking r-cran-fontawesome (0.5.3-1) ... 879s Selecting previously unselected package r-cran-tinytex. 879s Preparing to unpack .../176-r-cran-tinytex_0.58-1_all.deb ... 879s Unpacking r-cran-tinytex (0.58-1) ... 879s Selecting previously unselected package libjs-modernizr. 879s Preparing to unpack .../177-libjs-modernizr_3.13.0-0.1build1_all.deb ... 879s Unpacking libjs-modernizr (3.13.0-0.1build1) ... 879s Selecting previously unselected package r-cran-littler. 879s Preparing to unpack .../178-r-cran-littler_0.3.22-1_arm64.deb ... 879s Unpacking r-cran-littler (0.3.22-1) ... 879s Selecting previously unselected package r-cran-pkgkitten. 879s Preparing to unpack .../179-r-cran-pkgkitten_0.2.4-1_all.deb ... 879s Unpacking r-cran-pkgkitten (0.2.4-1) ... 879s Selecting previously unselected package r-cran-rcpp. 879s Preparing to unpack .../180-r-cran-rcpp_1.1.0-1_arm64.deb ... 879s Unpacking r-cran-rcpp (1.1.0-1) ... 879s Selecting previously unselected package r-cran-later. 879s Preparing to unpack .../181-r-cran-later_1.4.1+dfsg-1_arm64.deb ... 879s Unpacking r-cran-later (1.4.1+dfsg-1) ... 879s Selecting previously unselected package r-cran-magrittr. 879s Preparing to unpack .../182-r-cran-magrittr_2.0.3-1_arm64.deb ... 879s Unpacking r-cran-magrittr (2.0.3-1) ... 879s Selecting previously unselected package r-cran-promises. 879s Preparing to unpack .../183-r-cran-promises_1.3.2+dfsg-1_arm64.deb ... 879s Unpacking r-cran-promises (1.3.2+dfsg-1) ... 879s Selecting previously unselected package r-cran-httpuv. 879s Preparing to unpack .../184-r-cran-httpuv_1.6.15+dfsg-1_arm64.deb ... 879s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 879s Selecting previously unselected package r-cran-xtable. 879s Preparing to unpack .../185-r-cran-xtable_1%3a1.8-4-2build1_all.deb ... 879s Unpacking r-cran-xtable (1:1.8-4-2build1) ... 879s Selecting previously unselected package r-cran-sourcetools. 879s Preparing to unpack .../186-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 879s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 879s Selecting previously unselected package r-cran-crayon. 879s Preparing to unpack .../187-r-cran-crayon_1.5.3-1_all.deb ... 879s Unpacking r-cran-crayon (1.5.3-1) ... 879s Selecting previously unselected package r-cran-withr. 879s Preparing to unpack .../188-r-cran-withr_3.0.2+dfsg-1_all.deb ... 879s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 879s Selecting previously unselected package r-cran-commonmark. 880s Preparing to unpack .../189-r-cran-commonmark_1.9.5-1_arm64.deb ... 880s Unpacking r-cran-commonmark (1.9.5-1) ... 880s Selecting previously unselected package r-cran-glue. 880s Preparing to unpack .../190-r-cran-glue_1.8.0-1_arm64.deb ... 880s Unpacking r-cran-glue (1.8.0-1) ... 880s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 880s Preparing to unpack .../191-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 880s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 880s Selecting previously unselected package r-cran-shiny. 880s Preparing to unpack .../192-r-cran-shiny_1.10.0+dfsg-2_all.deb ... 880s Unpacking r-cran-shiny (1.10.0+dfsg-2) ... 880s Selecting previously unselected package r-cran-rmarkdown. 880s Preparing to unpack .../193-r-cran-rmarkdown_2.30+dfsg-1_all.deb ... 880s Unpacking r-cran-rmarkdown (2.30+dfsg-1) ... 880s Selecting previously unselected package r-cran-bookdown. 880s Preparing to unpack .../194-r-cran-bookdown_0.42+dfsg-1_all.deb ... 880s Unpacking r-cran-bookdown (0.42+dfsg-1) ... 880s Selecting previously unselected package r-cran-biocmanager. 880s Preparing to unpack .../195-r-cran-biocmanager_1.30.25+dfsg-1_all.deb ... 880s Unpacking r-cran-biocmanager (1.30.25+dfsg-1) ... 880s Selecting previously unselected package tex-common. 880s Preparing to unpack .../196-tex-common_6.20_all.deb ... 880s Unpacking tex-common (6.20) ... 880s Selecting previously unselected package t1utils. 880s Preparing to unpack .../197-t1utils_1.41-4build4_arm64.deb ... 880s Unpacking t1utils (1.41-4build4) ... 880s Selecting previously unselected package texlive-binaries. 880s Preparing to unpack .../198-texlive-binaries_2025.20250727.75242+ds-5build1_arm64.deb ... 880s Unpacking texlive-binaries (2025.20250727.75242+ds-5build1) ... 880s Selecting previously unselected package texlive-base. 880s Preparing to unpack .../199-texlive-base_2025.20260124-1_all.deb ... 880s Unpacking texlive-base (2025.20260124-1) ... 881s Selecting previously unselected package texlive-latex-base. 881s Preparing to unpack .../200-texlive-latex-base_2025.20260124-1_all.deb ... 881s Unpacking texlive-latex-base (2025.20260124-1) ... 882s Selecting previously unselected package texlive-bibtex-extra. 882s Preparing to unpack .../201-texlive-bibtex-extra_2025.20260124-1_all.deb ... 882s Unpacking texlive-bibtex-extra (2025.20260124-1) ... 885s Selecting previously unselected package r-bioc-biocversion. 885s Preparing to unpack .../202-r-bioc-biocversion_3.20.0-2_all.deb ... 885s Unpacking r-bioc-biocversion (3.20.0-2) ... 885s Selecting previously unselected package r-bioc-biocstyle. 885s Preparing to unpack .../203-r-bioc-biocstyle_2.34.0+dfsg-1_all.deb ... 885s Unpacking r-bioc-biocstyle (2.34.0+dfsg-1) ... 885s Selecting previously unselected package r-cran-plyr. 885s Preparing to unpack .../204-r-cran-plyr_1.8.9-1_arm64.deb ... 885s Unpacking r-cran-plyr (1.8.9-1) ... 885s Selecting previously unselected package r-cran-lattice. 885s Preparing to unpack .../205-r-cran-lattice_0.22-7-1_arm64.deb ... 885s Unpacking r-cran-lattice (0.22-7-1) ... 885s Selecting previously unselected package r-cran-matrix. 885s Preparing to unpack .../206-r-cran-matrix_1.7-4-1_arm64.deb ... 885s Unpacking r-cran-matrix (1.7-4-1) ... 885s Selecting previously unselected package r-bioc-biomformat. 885s Preparing to unpack .../207-r-bioc-biomformat_1.34.0+dfsg-2_all.deb ... 885s Unpacking r-bioc-biomformat (1.34.0+dfsg-2) ... 885s Selecting previously unselected package r-bioc-s4vectors. 885s Preparing to unpack .../208-r-bioc-s4vectors_0.44.0+dfsg-2_arm64.deb ... 885s Unpacking r-bioc-s4vectors (0.44.0+dfsg-2) ... 885s Selecting previously unselected package r-bioc-iranges. 885s Preparing to unpack .../209-r-bioc-iranges_2.40.1-3_arm64.deb ... 885s Unpacking r-bioc-iranges (2.40.1-3) ... 885s Selecting previously unselected package r-bioc-zlibbioc. 885s Preparing to unpack .../210-r-bioc-zlibbioc_1.52.0+dfsg-2_all.deb ... 885s Unpacking r-bioc-zlibbioc (1.52.0+dfsg-2) ... 885s Selecting previously unselected package r-bioc-xvector. 885s Preparing to unpack .../211-r-bioc-xvector_0.46.0-2_arm64.deb ... 885s Unpacking r-bioc-xvector (0.46.0-2) ... 885s Selecting previously unselected package r-cran-curl. 885s Preparing to unpack .../212-r-cran-curl_7.0.0+dfsg-1_arm64.deb ... 885s Unpacking r-cran-curl (7.0.0+dfsg-1) ... 885s Selecting previously unselected package r-cran-sys. 885s Preparing to unpack .../213-r-cran-sys_3.4.3-1_arm64.deb ... 885s Unpacking r-cran-sys (3.4.3-1) ... 885s Selecting previously unselected package r-cran-askpass. 885s Preparing to unpack .../214-r-cran-askpass_1.2.1-1_arm64.deb ... 885s Unpacking r-cran-askpass (1.2.1-1) ... 885s Selecting previously unselected package r-cran-openssl. 885s Preparing to unpack .../215-r-cran-openssl_2.3.2+dfsg-1_arm64.deb ... 885s Unpacking r-cran-openssl (2.3.2+dfsg-1) ... 885s Selecting previously unselected package r-cran-httr. 885s Preparing to unpack .../216-r-cran-httr_1.4.7+dfsg-1_all.deb ... 885s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 885s Selecting previously unselected package r-bioc-ucsc.utils. 885s Preparing to unpack .../217-r-bioc-ucsc.utils_1.2.0+ds-2_all.deb ... 885s Unpacking r-bioc-ucsc.utils (1.2.0+ds-2) ... 885s Selecting previously unselected package r-bioc-genomeinfodbdata. 885s Preparing to unpack .../218-r-bioc-genomeinfodbdata_1.2.13-2_all.deb ... 885s Unpacking r-bioc-genomeinfodbdata (1.2.13-2) ... 885s Selecting previously unselected package r-bioc-genomeinfodb. 885s Preparing to unpack .../219-r-bioc-genomeinfodb_1.42.3+dfsg-1_all.deb ... 885s Unpacking r-bioc-genomeinfodb (1.42.3+dfsg-1) ... 885s Selecting previously unselected package r-bioc-biostrings. 885s Preparing to unpack .../220-r-bioc-biostrings_2.74.1+dfsg-2_arm64.deb ... 885s Unpacking r-bioc-biostrings (2.74.1+dfsg-2) ... 885s Selecting previously unselected package r-cran-gtable. 885s Preparing to unpack .../221-r-cran-gtable_0.3.6+dfsg-1_all.deb ... 885s Unpacking r-cran-gtable (0.3.6+dfsg-1) ... 885s Selecting previously unselected package r-cran-isoband. 885s Preparing to unpack .../222-r-cran-isoband_0.2.7-1_arm64.deb ... 885s Unpacking r-cran-isoband (0.2.7-1) ... 885s Selecting previously unselected package r-cran-s7. 886s Preparing to unpack .../223-r-cran-s7_0.2.0-1_arm64.deb ... 886s Unpacking r-cran-s7 (0.2.0-1) ... 886s Selecting previously unselected package r-cran-farver. 886s Preparing to unpack .../224-r-cran-farver_2.1.2-1_arm64.deb ... 886s Unpacking r-cran-farver (2.1.2-1) ... 886s Selecting previously unselected package r-cran-labeling. 886s Preparing to unpack .../225-r-cran-labeling_0.4.3-1_all.deb ... 886s Unpacking r-cran-labeling (0.4.3-1) ... 886s Selecting previously unselected package r-cran-rcolorbrewer. 886s Preparing to unpack .../226-r-cran-rcolorbrewer_1.1-3-1build2_all.deb ... 886s Unpacking r-cran-rcolorbrewer (1.1-3-1build2) ... 886s Selecting previously unselected package r-cran-viridislite. 886s Preparing to unpack .../227-r-cran-viridislite_0.4.3-1_all.deb ... 886s Unpacking r-cran-viridislite (0.4.3-1) ... 886s Selecting previously unselected package r-cran-scales. 886s Preparing to unpack .../228-r-cran-scales_1.4.0-1_all.deb ... 886s Unpacking r-cran-scales (1.4.0-1) ... 886s Selecting previously unselected package r-cran-vctrs. 886s Preparing to unpack .../229-r-cran-vctrs_0.6.5-1_arm64.deb ... 886s Unpacking r-cran-vctrs (0.6.5-1) ... 886s Selecting previously unselected package r-cran-ggplot2. 886s Preparing to unpack .../230-r-cran-ggplot2_4.0.2+dfsg-1_all.deb ... 886s Unpacking r-cran-ggplot2 (4.0.2+dfsg-1) ... 886s Selecting previously unselected package r-cran-stringi. 886s Preparing to unpack .../231-r-cran-stringi_1.8.4-1build2_arm64.deb ... 886s Unpacking r-cran-stringi (1.8.4-1build2) ... 886s Selecting previously unselected package r-cran-stringr. 886s Preparing to unpack .../232-r-cran-stringr_1.5.1-1_all.deb ... 886s Unpacking r-cran-stringr (1.5.1-1) ... 886s Selecting previously unselected package r-cran-reshape2. 886s Preparing to unpack .../233-r-cran-reshape2_1.4.4-2build2_arm64.deb ... 886s Unpacking r-cran-reshape2 (1.4.4-2build2) ... 886s Selecting previously unselected package r-bioc-decontam. 886s Preparing to unpack .../234-r-bioc-decontam_1.26.0+dfsg-2_all.deb ... 886s Unpacking r-bioc-decontam (1.26.0+dfsg-2) ... 886s Selecting previously unselected package r-cran-survival. 886s Preparing to unpack .../235-r-cran-survival_3.8-6-1_arm64.deb ... 886s Unpacking r-cran-survival (3.8-6-1) ... 886s Selecting previously unselected package r-cran-mass. 886s Preparing to unpack .../236-r-cran-mass_7.3-65-1_arm64.deb ... 886s Unpacking r-cran-mass (7.3-65-1) ... 886s Selecting previously unselected package r-bioc-multtest. 886s Preparing to unpack .../237-r-bioc-multtest_2.62.0-2_arm64.deb ... 886s Unpacking r-bioc-multtest (2.62.0-2) ... 886s Selecting previously unselected package r-cran-pixmap. 886s Preparing to unpack .../238-r-cran-pixmap_0.4-14-1_all.deb ... 886s Unpacking r-cran-pixmap (0.4-14-1) ... 886s Selecting previously unselected package r-cran-sp. 887s Preparing to unpack .../239-r-cran-sp_1%3a2.2-0+dfsg-1_arm64.deb ... 887s Unpacking r-cran-sp (1:2.2-0+dfsg-1) ... 887s Selecting previously unselected package r-cran-rcpparmadillo. 887s Preparing to unpack .../240-r-cran-rcpparmadillo_15.2.3-1-1_arm64.deb ... 887s Unpacking 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unpack .../246-r-cran-codetools_0.2-20-1build1_all.deb ... 887s Unpacking r-cran-codetools (0.2-20-1build1) ... 887s Selecting previously unselected package r-cran-iterators. 887s Preparing to unpack .../247-r-cran-iterators_1.0.14-1build1_all.deb ... 887s Unpacking r-cran-iterators (1.0.14-1build1) ... 887s Selecting previously unselected package r-cran-foreach. 887s Preparing to unpack .../248-r-cran-foreach_1.5.2-1build1_all.deb ... 887s Unpacking r-cran-foreach (1.5.2-1build1) ... 887s Selecting previously unselected package r-cran-pkgconfig. 887s Preparing to unpack .../249-r-cran-pkgconfig_2.0.3-2build2_all.deb ... 887s Unpacking r-cran-pkgconfig (2.0.3-2build2) ... 887s Selecting previously unselected package r-cran-cpp11. 887s Preparing to unpack .../250-r-cran-cpp11_0.5.3-1_all.deb ... 887s Unpacking r-cran-cpp11 (0.5.3-1) ... 887s Selecting previously unselected package r-cran-igraph. 887s Preparing to unpack .../251-r-cran-igraph_2.1.4-1build1_arm64.deb ... 887s Unpacking 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Setting up r-cran-shiny (1.10.0+dfsg-2) ... 893s Setting up r-cran-rmarkdown (2.30+dfsg-1) ... 893s Setting up r-cran-bookdown (0.42+dfsg-1) ... 893s Setting up r-bioc-phyloseq (1.50.0+dfsg-2) ... 893s Setting up r-bioc-biocstyle (2.34.0+dfsg-1) ... 893s Processing triggers for libc-bin (2.42-2ubuntu4) ... 893s Processing triggers for man-db (2.13.1-1build1) ... 894s Processing triggers for install-info (7.2-5) ... 894s Processing triggers for tex-common (6.20) ... 895s Running updmap-sys. This may take some time... done. 895s Running mktexlsr /var/lib/texmf ... done. 895s Building format(s) --all. 921s This may take some time... done. 922s autopkgtest [23:30:56]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 922s autopkgtest [23:30:56]: test pkg-r-autopkgtest: [----------------------- 923s Test: Try to load the R library decontam 923s 923s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 923s Copyright (C) 2025 The R Foundation for Statistical Computing 923s Platform: aarch64-unknown-linux-gnu 923s 923s R is free software and comes with ABSOLUTELY NO WARRANTY. 923s You are welcome to redistribute it under certain conditions. 923s Type 'license()' or 'licence()' for distribution details. 923s 923s R is a collaborative project with many contributors. 923s Type 'contributors()' for more information and 923s 'citation()' on how to cite R or R packages in publications. 923s 923s Type 'demo()' for some demos, 'help()' for on-line help, or 923s 'help.start()' for an HTML browser interface to help. 923s Type 'q()' to quit R. 923s 923s > library('decontam') 924s > 924s find: ‘tests’: No such file or directory 924s autopkgtest [23:30:58]: test pkg-r-autopkgtest: -----------------------] 924s pkg-r-autopkgtest PASS 924s autopkgtest [23:30:58]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 925s autopkgtest [23:30:59]: @@@@@@@@@@@@@@@@@@@@ summary 925s pkg-r-autopkgtest PASS