0s autopkgtest [23:15:09]: starting date and time: 2026-02-09 23:15:09+0000 0s autopkgtest [23:15:09]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [23:15:09]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.n3ke93lk/out --timeout-copy=6000 --needs-internet=try --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-cran-ggplot2 --apt-upgrade r-bioc-cummerbund --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-cran-ggplot2/4.0.2+dfsg-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-arm64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@sto01-arm64-20.secgroup --name adt-resolute-arm64-r-bioc-cummerbund-20260209-231509-juju-7f2275-prod-proposed-migration-environment-2-e19743bf-95f0-4d6b-ad07-a3fbf3a6f075 --image adt/ubuntu-resolute-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-autopkgtest-workers-arm64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 5s Creating nova instance adt-resolute-arm64-r-bioc-cummerbund-20260209-231509-juju-7f2275-prod-proposed-migration-environment-2-e19743bf-95f0-4d6b-ad07-a3fbf3a6f075 from image adt/ubuntu-resolute-arm64-server-20260209.img (UUID 793037ca-75af-461b-82de-f8081300b2e3)... 119s autopkgtest [23:17:08]: testbed dpkg architecture: arm64 120s autopkgtest [23:17:09]: testbed apt version: 3.1.15 120s autopkgtest [23:17:09]: @@@@@@@@@@@@@@@@@@@@ test bed setup 120s autopkgtest [23:17:09]: testbed release detected to be: None 121s autopkgtest [23:17:10]: updating testbed package index (apt update) 121s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 121s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 121s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 121s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 122s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [176 kB] 122s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1645 kB] 124s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [29.4 kB] 125s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 Packages [246 kB] 125s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 c-n-f Metadata [6216 B] 125s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 c-n-f Metadata [304 B] 125s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 Packages [1580 kB] 127s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 c-n-f Metadata [32.0 kB] 127s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 Packages [21.7 kB] 127s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 c-n-f Metadata [688 B] 129s Fetched 3862 kB in 6s (632 kB/s) 129s Reading package lists... 131s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 131s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 131s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 131s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 132s Reading package lists... 132s Reading package lists... 132s Building dependency tree... 132s Reading state information... 132s Calculating upgrade... 133s The following packages will be upgraded: 133s cryptsetup-bin dracut-install iproute2 iptables libcryptsetup12 libip4tc2 133s libip6tc2 libxtables12 wget 133s 9 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 133s Need to get 2534 kB of archives. 133s After this operation, 18.4 kB of additional disk space will be used. 133s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 iptables arm64 1.8.11-2ubuntu3 [386 kB] 133s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 libip4tc2 arm64 1.8.11-2ubuntu3 [24.3 kB] 133s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 libip6tc2 arm64 1.8.11-2ubuntu3 [24.7 kB] 133s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 libxtables12 arm64 1.8.11-2ubuntu3 [36.7 kB] 133s Get:5 http://ftpmaster.internal/ubuntu resolute/main arm64 iproute2 arm64 6.18.0-1ubuntu1 [1171 kB] 135s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 libcryptsetup12 arm64 2:2.8.0-1ubuntu3 [274 kB] 135s Get:7 http://ftpmaster.internal/ubuntu resolute/main arm64 wget arm64 1.25.0-2ubuntu4 [344 kB] 135s Get:8 http://ftpmaster.internal/ubuntu resolute/main arm64 cryptsetup-bin arm64 2:2.8.0-1ubuntu3 [227 kB] 135s Get:9 http://ftpmaster.internal/ubuntu resolute/main arm64 dracut-install arm64 109-11ubuntu1 [45.3 kB] 135s dpkg-preconfigure: unable to re-open stdin: No such file or directory 135s Fetched 2534 kB in 2s (1217 kB/s) 135s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 136597 files and directories currently installed.) 135s Preparing to unpack .../0-iptables_1.8.11-2ubuntu3_arm64.deb ... 135s Unpacking iptables (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 136s Preparing to unpack .../1-libip4tc2_1.8.11-2ubuntu3_arm64.deb ... 136s Unpacking libip4tc2:arm64 (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 136s Preparing to unpack .../2-libip6tc2_1.8.11-2ubuntu3_arm64.deb ... 136s Unpacking libip6tc2:arm64 (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 136s Preparing to unpack .../3-libxtables12_1.8.11-2ubuntu3_arm64.deb ... 136s Unpacking libxtables12:arm64 (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 136s Preparing to unpack .../4-iproute2_6.18.0-1ubuntu1_arm64.deb ... 136s Unpacking iproute2 (6.18.0-1ubuntu1) over (6.16.0-1ubuntu3) ... 136s Preparing to unpack .../5-libcryptsetup12_2%3a2.8.0-1ubuntu3_arm64.deb ... 136s Unpacking libcryptsetup12:arm64 (2:2.8.0-1ubuntu3) over (2:2.8.0-1ubuntu2) ... 136s Preparing to unpack .../6-wget_1.25.0-2ubuntu4_arm64.deb ... 136s Unpacking wget (1.25.0-2ubuntu4) over (1.25.0-2ubuntu3) ... 136s Preparing to unpack .../7-cryptsetup-bin_2%3a2.8.0-1ubuntu3_arm64.deb ... 136s Unpacking cryptsetup-bin (2:2.8.0-1ubuntu3) over (2:2.8.0-1ubuntu2) ... 136s Preparing to unpack .../8-dracut-install_109-11ubuntu1_arm64.deb ... 136s Unpacking dracut-install (109-11ubuntu1) over (109-9ubuntu1) ... 137s Setting up libip4tc2:arm64 (1.8.11-2ubuntu3) ... 137s Setting up wget (1.25.0-2ubuntu4) ... 137s Setting up libip6tc2:arm64 (1.8.11-2ubuntu3) ... 137s Setting up libxtables12:arm64 (1.8.11-2ubuntu3) ... 137s Setting up dracut-install (109-11ubuntu1) ... 137s Setting up libcryptsetup12:arm64 (2:2.8.0-1ubuntu3) ... 137s Setting up cryptsetup-bin (2:2.8.0-1ubuntu3) ... 137s Setting up iptables (1.8.11-2ubuntu3) ... 137s Setting up iproute2 (6.18.0-1ubuntu1) ... 137s Processing triggers for man-db (2.13.1-1build1) ... 138s Processing triggers for install-info (7.2-5) ... 138s Processing triggers for libc-bin (2.42-2ubuntu4) ... 138s autopkgtest [23:17:27]: upgrading testbed (apt dist-upgrade and autopurge) 138s Reading package lists... 139s Building dependency tree... 139s Reading state information... 139s Calculating upgrade... 139s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 139s Reading package lists... 140s Building dependency tree... 140s Reading state information... 140s Solving dependencies... 140s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 143s autopkgtest [23:17:32]: testbed running kernel: Linux 6.19.0-3-generic #3-Ubuntu SMP PREEMPT_DYNAMIC Fri Jan 23 19:46:27 UTC 2026 143s autopkgtest [23:17:32]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-cummerbund 148s Get:1 http://ftpmaster.internal/ubuntu resolute/universe r-bioc-cummerbund 2.48.0-2 (dsc) [2268 B] 148s Get:2 http://ftpmaster.internal/ubuntu resolute/universe r-bioc-cummerbund 2.48.0-2 (tar) [2736 kB] 148s Get:3 http://ftpmaster.internal/ubuntu resolute/universe r-bioc-cummerbund 2.48.0-2 (diff) [4540 B] 148s gpgv: Signature made Tue Jan 14 11:32:36 2025 UTC 148s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 148s gpgv: issuer "crusoe@debian.org" 148s gpgv: Can't check signature: No public key 148s dpkg-source: warning: cannot verify inline signature for ./r-bioc-cummerbund_2.48.0-2.dsc: no acceptable signature found 148s autopkgtest [23:17:37]: testing package r-bioc-cummerbund version 2.48.0-2 149s autopkgtest [23:17:38]: build not needed 150s autopkgtest [23:17:39]: test pkg-r-autopkgtest: preparing testbed 151s Reading package lists... 151s Building dependency tree... 151s Reading state information... 151s Solving dependencies... 152s The following NEW packages will be installed: 152s build-essential cpp cpp-15 cpp-15-aarch64-linux-gnu cpp-aarch64-linux-gnu 152s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 152s fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax g++ g++-15 152s g++-15-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-15 152s gcc-15-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-15 152s gfortran-15-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 152s javascript-common libasan8 libblas-dev libblas3 libboost-dev 152s libboost1.90-dev libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 152s libcrypt-dev libdatrie1 libdeflate-dev libdeflate0 libfontconfig1 152s libgcc-15-dev libgfortran-15-dev libgfortran5 libgomp1 libgraphite2-3 152s libharfbuzz0b libhwasan0 libice6 libicu-dev libisl23 libitm1 libjbig0 152s libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev 152s libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js 152s libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js 152s libjs-jquery-ui libjs-json libjs-mathjax libjs-microplugin.js 152s libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js 152s libjs-twitter-bootstrap-datepicker liblapack-dev liblapack3 liblerc4 152s liblsan0 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libpango-1.0-0 152s libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libpcre2-16-0 152s libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 152s libpng-dev libreadline-dev libsharpyuv0 libsm6 libstdc++-15-dev libtcl8.6 152s libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 152s libwebp7 libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64 152s libzstd-dev linux-libc-dev node-bootstrap-sass node-html5shiv 152s node-normalize.css pandoc pandoc-data pkg-r-autopkgtest pkgconf pkgconf-bin 152s r-base-core r-base-dev r-bioc-annotationdbi r-bioc-annotationfilter 152s r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio 152s r-bioc-biocparallel r-bioc-biomart r-bioc-biostrings r-bioc-biovizbase 152s r-bioc-bsgenome r-bioc-cummerbund r-bioc-delayedarray r-bioc-ensembldb 152s r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments 152s r-bioc-genomicfeatures r-bioc-genomicranges r-bioc-gviz r-bioc-iranges 152s r-bioc-keggrest r-bioc-matrixgenerics r-bioc-protgenerics r-bioc-rhtslib 152s r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors 152s r-bioc-sparsearray r-bioc-summarizedexperiment r-bioc-ucsc.utils 152s r-bioc-variantannotation r-bioc-xvector r-bioc-zlibbioc r-cran-abind 152s r-cran-acepack r-cran-askpass r-cran-backports r-cran-base64enc r-cran-bh 152s r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob r-cran-bslib r-cran-cachem 152s r-cran-checkmate r-cran-chron r-cran-cli r-cran-cluster r-cran-codetools 152s r-cran-colorspace r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-curl 152s r-cran-data.table r-cran-dbi r-cran-dbplyr r-cran-deldir r-cran-dichromat 152s r-cran-digest r-cran-dplyr r-cran-evaluate r-cran-fansi r-cran-farver 152s r-cran-fastcluster r-cran-fastmap r-cran-filelock r-cran-fontawesome 152s r-cran-foreign r-cran-formatr r-cran-formula r-cran-fs r-cran-futile.logger 152s r-cran-futile.options r-cran-generics r-cran-ggplot2 r-cran-glue 152s r-cran-gridextra r-cran-gtable r-cran-highr r-cran-hmisc r-cran-hms 152s r-cran-htmltable r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv 152s r-cran-httr r-cran-httr2 r-cran-interp r-cran-isoband r-cran-jpeg 152s r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-labeling 152s r-cran-lambda.r r-cran-later r-cran-lattice r-cran-latticeextra 152s r-cran-lazyeval r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass 152s r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-nnet 152s r-cran-openssl r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr 152s r-cran-plyr r-cran-png r-cran-prettyunits r-cran-progress r-cran-promises 152s r-cran-purrr r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp 152s r-cran-rcppeigen r-cran-rcurl r-cran-reshape2 r-cran-restfulr r-cran-rjson 152s r-cran-rlang r-cran-rmarkdown r-cran-rpart r-cran-rsqlite r-cran-rstudioapi 152s r-cran-s7 r-cran-sass r-cran-scales r-cran-shiny r-cran-snow 152s r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys 152s r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-utf8 152s r-cran-vctrs r-cran-viridis r-cran-viridislite r-cran-withr r-cran-xfun 152s r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto unzip 152s x11-common xdg-utils zip zlib1g-dev 152s 0 upgraded, 294 newly installed, 0 to remove and 0 not upgraded. 152s Need to get 371 MB of archives. 152s After this operation, 1199 MB of additional disk space will be used. 152s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 libc-dev-bin arm64 2.42-2ubuntu4 [22.5 kB] 152s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 linux-libc-dev arm64 6.19.0-3.3 [1819 kB] 155s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 libcrypt-dev arm64 1:4.5.1-1 [123 kB] 155s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 rpcsvc-proto arm64 1.4.3-1build1 [65.6 kB] 155s Get:5 http://ftpmaster.internal/ubuntu resolute/main arm64 libc6-dev arm64 2.42-2ubuntu4 [1765 kB] 159s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 libisl23 arm64 0.27-1build1 [676 kB] 160s Get:7 http://ftpmaster.internal/ubuntu resolute/main arm64 libmpc3 arm64 1.3.1-2 [55.6 kB] 160s Get:8 http://ftpmaster.internal/ubuntu resolute/main arm64 cpp-15-aarch64-linux-gnu arm64 15.2.0-12ubuntu1 [11.7 MB] 179s Get:9 http://ftpmaster.internal/ubuntu resolute/main arm64 cpp-15 arm64 15.2.0-12ubuntu1 [1030 B] 179s Get:10 http://ftpmaster.internal/ubuntu resolute/main arm64 cpp-aarch64-linux-gnu arm64 4:15.2.0-4ubuntu1 [5736 B] 179s Get:11 http://ftpmaster.internal/ubuntu resolute/main arm64 cpp arm64 4:15.2.0-4ubuntu1 [22.4 kB] 179s Get:12 http://ftpmaster.internal/ubuntu resolute/main arm64 libcc1-0 arm64 15.2.0-12ubuntu1 [49.0 kB] 179s Get:13 http://ftpmaster.internal/ubuntu resolute/main arm64 libgomp1 arm64 15.2.0-12ubuntu1 [147 kB] 179s Get:14 http://ftpmaster.internal/ubuntu resolute/main arm64 libitm1 arm64 15.2.0-12ubuntu1 [27.8 kB] 179s Get:15 http://ftpmaster.internal/ubuntu resolute/main arm64 libasan8 arm64 15.2.0-12ubuntu1 [2920 kB] 184s Get:16 http://ftpmaster.internal/ubuntu resolute/main arm64 liblsan0 arm64 15.2.0-12ubuntu1 [1316 kB] 186s Get:17 http://ftpmaster.internal/ubuntu resolute/main arm64 libtsan2 arm64 15.2.0-12ubuntu1 [2688 kB] 190s Get:18 http://ftpmaster.internal/ubuntu resolute/main arm64 libubsan1 arm64 15.2.0-12ubuntu1 [1175 kB] 191s Get:19 http://ftpmaster.internal/ubuntu resolute/main arm64 libhwasan0 arm64 15.2.0-12ubuntu1 [1638 kB] 194s Get:20 http://ftpmaster.internal/ubuntu resolute/main arm64 libgcc-15-dev arm64 15.2.0-12ubuntu1 [2600 kB] 198s Get:21 http://ftpmaster.internal/ubuntu resolute/main arm64 gcc-15-aarch64-linux-gnu arm64 15.2.0-12ubuntu1 [23.1 MB] 237s Get:22 http://ftpmaster.internal/ubuntu resolute/main arm64 gcc-15 arm64 15.2.0-12ubuntu1 [519 kB] 237s Get:23 http://ftpmaster.internal/ubuntu resolute/main arm64 gcc-aarch64-linux-gnu arm64 4:15.2.0-4ubuntu1 [1206 B] 237s Get:24 http://ftpmaster.internal/ubuntu resolute/main arm64 gcc arm64 4:15.2.0-4ubuntu1 [5016 B] 237s Get:25 http://ftpmaster.internal/ubuntu resolute/main arm64 libstdc++-15-dev arm64 15.2.0-12ubuntu1 [2549 kB] 241s Get:26 http://ftpmaster.internal/ubuntu resolute/main arm64 g++-15-aarch64-linux-gnu arm64 15.2.0-12ubuntu1 [13.2 MB] 263s Get:27 http://ftpmaster.internal/ubuntu resolute/main arm64 g++-15 arm64 15.2.0-12ubuntu1 [25.3 kB] 263s Get:28 http://ftpmaster.internal/ubuntu resolute/main arm64 g++-aarch64-linux-gnu arm64 4:15.2.0-4ubuntu1 [956 B] 263s Get:29 http://ftpmaster.internal/ubuntu resolute/main arm64 g++ arm64 4:15.2.0-4ubuntu1 [1080 B] 263s Get:30 http://ftpmaster.internal/ubuntu resolute/main arm64 build-essential arm64 12.12ubuntu2 [5254 B] 264s Get:31 http://ftpmaster.internal/ubuntu resolute/main arm64 dctrl-tools arm64 2.24-3build4 [102 kB] 264s Get:32 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-mono all 2.37-8build1 [502 kB] 264s Get:33 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-core all 2.37-8build1 [834 kB] 266s Get:34 http://ftpmaster.internal/ubuntu resolute/main arm64 fontconfig-config arm64 2.17.1-3ubuntu1 [38.5 kB] 266s Get:35 http://ftpmaster.internal/ubuntu resolute/main arm64 libfontconfig1 arm64 2.17.1-3ubuntu1 [144 kB] 266s Get:36 http://ftpmaster.internal/ubuntu resolute/main arm64 fontconfig arm64 2.17.1-3ubuntu1 [181 kB] 266s Get:37 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1build1 [531 kB] 267s Get:38 http://ftpmaster.internal/ubuntu resolute/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-6 [119 kB] 267s Get:39 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-mathjax all 2.7.9+dfsg-1build1 [2283 kB] 272s Get:40 http://ftpmaster.internal/ubuntu resolute/main arm64 libgfortran5 arm64 15.2.0-12ubuntu1 [451 kB] 272s Get:41 http://ftpmaster.internal/ubuntu resolute/main arm64 libgfortran-15-dev arm64 15.2.0-12ubuntu1 [490 kB] 272s Get:42 http://ftpmaster.internal/ubuntu resolute/main arm64 gfortran-15-aarch64-linux-gnu arm64 15.2.0-12ubuntu1 [12.5 MB] 294s Get:43 http://ftpmaster.internal/ubuntu resolute/main arm64 gfortran-15 arm64 15.2.0-12ubuntu1 [18.1 kB] 294s Get:44 http://ftpmaster.internal/ubuntu resolute/main arm64 gfortran-aarch64-linux-gnu arm64 4:15.2.0-4ubuntu1 [1022 B] 294s Get:45 http://ftpmaster.internal/ubuntu resolute/main arm64 gfortran arm64 4:15.2.0-4ubuntu1 [1160 B] 294s Get:46 http://ftpmaster.internal/ubuntu resolute/main arm64 icu-devtools arm64 78.2-1ubuntu1 [207 kB] 294s Get:47 http://ftpmaster.internal/ubuntu resolute/main arm64 javascript-common all 12+nmu1build1 [4864 B] 294s Get:48 http://ftpmaster.internal/ubuntu resolute/main arm64 libblas3 arm64 3.12.1-7ubuntu1 [181 kB] 294s Get:49 http://ftpmaster.internal/ubuntu resolute/main arm64 libblas-dev arm64 3.12.1-7ubuntu1 [160 kB] 294s Get:50 http://ftpmaster.internal/ubuntu resolute/main arm64 libboost1.90-dev arm64 1.90.0-2ubuntu1 [11.5 MB] 318s Get:51 http://ftpmaster.internal/ubuntu resolute/main arm64 libboost-dev arm64 1.90.0.0ubuntu3 [4764 B] 318s Get:52 http://ftpmaster.internal/ubuntu resolute/main arm64 libbz2-dev arm64 1.0.8-6build2 [34.9 kB] 318s Get:53 http://ftpmaster.internal/ubuntu resolute/main arm64 libpixman-1-0 arm64 0.46.4-1 [204 kB] 318s Get:54 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-render0 arm64 1.17.0-2ubuntu1 [16.4 kB] 318s Get:55 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-shm0 arm64 1.17.0-2ubuntu1 [5938 B] 318s Get:56 http://ftpmaster.internal/ubuntu resolute/main arm64 libxrender1 arm64 1:0.9.12-1 [19.5 kB] 319s Get:57 http://ftpmaster.internal/ubuntu resolute/main arm64 libcairo2 arm64 1.18.4-3 [556 kB] 320s Get:58 http://ftpmaster.internal/ubuntu resolute/main arm64 libdatrie1 arm64 0.2.14-1 [19.6 kB] 320s Get:59 http://ftpmaster.internal/ubuntu resolute/main arm64 libdeflate0 arm64 1.23-2build1 [46.8 kB] 320s Get:60 http://ftpmaster.internal/ubuntu resolute/main arm64 libdeflate-dev arm64 1.23-2build1 [54.3 kB] 320s Get:61 http://ftpmaster.internal/ubuntu resolute/main arm64 libgraphite2-3 arm64 1.3.14-11ubuntu1 [72.1 kB] 320s Get:62 http://ftpmaster.internal/ubuntu resolute/main arm64 libharfbuzz0b arm64 12.3.2-1 [510 kB] 320s Get:63 http://ftpmaster.internal/ubuntu resolute/main arm64 x11-common all 1:7.7+24ubuntu1 [22.4 kB] 320s Get:64 http://ftpmaster.internal/ubuntu resolute/main arm64 libice6 arm64 2:1.1.1-1build1 [43.0 kB] 320s Get:65 http://ftpmaster.internal/ubuntu resolute/main arm64 libicu-dev arm64 78.2-1ubuntu1 [12.5 MB] 341s Get:66 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg-turbo8 arm64 2.1.5-4ubuntu3 [161 kB] 341s Get:67 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg-turbo8-dev arm64 2.1.5-4ubuntu3 [301 kB] 341s Get:68 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 341s Get:69 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 341s Get:70 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 341s Get:71 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-bootstrap all 3.4.1+dfsg-6 [129 kB] 341s Get:72 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-popper.js all 1.16.1+ds-6build1 [53.8 kB] 341s Get:73 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-bootstrap4 all 4.6.2+dfsg-1 [532 kB] 342s Get:74 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-d3 all 3.5.17-4build1 [136 kB] 342s Get:75 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 342s Get:76 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-highlight.js all 10.7.3+dfsg-2 [144 kB] 342s Get:77 http://ftpmaster.internal/ubuntu resolute/main arm64 libjs-jquery all 3.7.1+dfsg+~3.5.33-1build1 [321 kB] 342s Get:78 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2build1 [145 kB] 342s Get:79 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 342s Get:80 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-2 [3946 B] 342s Get:81 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 342s Get:82 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1build1 [251 kB] 342s Get:83 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-json all 0~20221030+~1.0.8-1build1 [20.6 kB] 342s Get:84 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-prettify all 2015.12.04+dfsg-3 [41.4 kB] 342s Get:85 http://ftpmaster.internal/ubuntu resolute/main arm64 liblapack3 arm64 3.12.1-7ubuntu1 [2299 kB] 346s Get:86 http://ftpmaster.internal/ubuntu resolute/main arm64 liblapack-dev arm64 3.12.1-7ubuntu1 [4456 kB] 353s Get:87 http://ftpmaster.internal/ubuntu resolute/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu2 [174 kB] 353s Get:88 http://ftpmaster.internal/ubuntu resolute/main arm64 liblua5.4-0 arm64 5.4.8-1 [171 kB] 353s Get:89 http://ftpmaster.internal/ubuntu resolute/main arm64 libncurses-dev arm64 6.6+20251231-1 [391 kB] 353s Get:90 http://ftpmaster.internal/ubuntu resolute/main arm64 libthai-data all 0.1.30-1 [155 kB] 353s Get:91 http://ftpmaster.internal/ubuntu resolute/main arm64 libthai0 arm64 0.1.30-1 [18.3 kB] 353s Get:92 http://ftpmaster.internal/ubuntu resolute/main arm64 libpango-1.0-0 arm64 1.57.0-1 [238 kB] 353s Get:93 http://ftpmaster.internal/ubuntu resolute/main arm64 libpangoft2-1.0-0 arm64 1.57.0-1 [51.5 kB] 353s Get:94 http://ftpmaster.internal/ubuntu resolute/main arm64 libpangocairo-1.0-0 arm64 1.57.0-1 [27.9 kB] 353s Get:95 http://ftpmaster.internal/ubuntu resolute/main arm64 libpaper2 arm64 2.2.5-0.3build1 [17.3 kB] 353s Get:96 http://ftpmaster.internal/ubuntu resolute/main arm64 libpaper-utils arm64 2.2.5-0.3build1 [15.4 kB] 353s Get:97 http://ftpmaster.internal/ubuntu resolute/main arm64 libpcre2-16-0 arm64 10.46-1 [225 kB] 353s Get:98 http://ftpmaster.internal/ubuntu resolute/main arm64 libpcre2-32-0 arm64 10.46-1 [213 kB] 353s Get:99 http://ftpmaster.internal/ubuntu resolute/main arm64 libpcre2-posix3 arm64 10.46-1 [7300 B] 353s Get:100 http://ftpmaster.internal/ubuntu resolute/main arm64 libpcre2-dev arm64 10.46-1 [772 kB] 355s Get:101 http://ftpmaster.internal/ubuntu resolute/main arm64 libpkgconf3 arm64 1.8.1-4build1 [33.7 kB] 355s Get:102 http://ftpmaster.internal/ubuntu resolute/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu2 [899 kB] 356s Get:103 http://ftpmaster.internal/ubuntu resolute/main arm64 libpng-dev arm64 1.6.54-1 [268 kB] 356s Get:104 http://ftpmaster.internal/ubuntu resolute/main arm64 libreadline-dev arm64 8.3-3 [199 kB] 356s Get:105 http://ftpmaster.internal/ubuntu resolute/main arm64 libsharpyuv0 arm64 1.5.0-0.1build1 [16.7 kB] 356s Get:106 http://ftpmaster.internal/ubuntu resolute/main arm64 libsm6 arm64 2:1.2.6-1build1 [16.8 kB] 356s Get:107 http://ftpmaster.internal/ubuntu resolute/main arm64 libtcl8.6 arm64 8.6.17+dfsg-1build1 [983 kB] 358s Get:108 http://ftpmaster.internal/ubuntu resolute/main arm64 libjbig0 arm64 2.1-6.1ubuntu3 [29.2 kB] 358s Get:109 http://ftpmaster.internal/ubuntu resolute/main arm64 libwebp7 arm64 1.5.0-0.1build1 [205 kB] 358s Get:110 http://ftpmaster.internal/ubuntu resolute/main arm64 libtiff6 arm64 4.7.0-3ubuntu3 [196 kB] 358s Get:111 http://ftpmaster.internal/ubuntu resolute/main arm64 libxft2 arm64 2.3.6-1build2 [43.2 kB] 358s Get:112 http://ftpmaster.internal/ubuntu resolute/main arm64 libxss1 arm64 1:1.2.3-1build4 [7102 B] 358s Get:113 http://ftpmaster.internal/ubuntu resolute/main arm64 libtk8.6 arm64 8.6.17-1 [811 kB] 359s Get:114 http://ftpmaster.internal/ubuntu resolute/main arm64 libxt6t64 arm64 1:1.2.1-1.3 [168 kB] 359s Get:115 http://ftpmaster.internal/ubuntu resolute/main arm64 libzstd-dev arm64 1.5.7+dfsg-3 [349 kB] 359s Get:116 http://ftpmaster.internal/ubuntu resolute/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 359s Get:117 http://ftpmaster.internal/ubuntu resolute/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 359s Get:118 http://ftpmaster.internal/ubuntu resolute/universe arm64 node-normalize.css all 8.0.1-5.1 [10.4 kB] 359s Get:119 http://ftpmaster.internal/ubuntu resolute/universe arm64 pandoc-data all 3.1.11.1-3build1 [78.8 kB] 359s Get:120 http://ftpmaster.internal/ubuntu resolute/universe arm64 pandoc arm64 3.1.11.1+ds-4 [28.0 MB] 434s Get:121 http://ftpmaster.internal/ubuntu resolute/main arm64 zip arm64 3.0-15ubuntu3 [170 kB] 434s Get:122 http://ftpmaster.internal/ubuntu resolute/main arm64 unzip arm64 6.0-29ubuntu1 [176 kB] 434s Get:123 http://ftpmaster.internal/ubuntu resolute/main arm64 xdg-utils all 1.2.1-2ubuntu2 [66.1 kB] 434s Get:124 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-base-core arm64 4.5.2-1ubuntu2 [28.6 MB] 500s Get:125 http://ftpmaster.internal/ubuntu resolute/main arm64 liblzma-dev arm64 5.8.2-2 [180 kB] 500s Get:126 http://ftpmaster.internal/ubuntu resolute/main arm64 pkgconf-bin arm64 1.8.1-4build1 [21.7 kB] 500s Get:127 http://ftpmaster.internal/ubuntu resolute/main arm64 pkgconf arm64 1.8.1-4build1 [16.8 kB] 500s Get:128 http://ftpmaster.internal/ubuntu resolute/main arm64 libtirpc-dev arm64 1.3.6+ds-1 [202 kB] 500s Get:129 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-base-dev all 4.5.2-1ubuntu2 [1880 B] 500s Get:130 http://ftpmaster.internal/ubuntu resolute/universe arm64 pkg-r-autopkgtest all 20250812 [6158 B] 500s Get:131 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-biocgenerics all 0.52.0-2 [624 kB] 502s Get:132 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-biobase arm64 2.66.0-2 [2331 kB] 507s Get:133 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-s4vectors arm64 0.44.0+dfsg-2 [2054 kB] 510s Get:134 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-iranges arm64 2.40.1-3 [2301 kB] 514s Get:135 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-dbi all 1.2.3-1build1 [855 kB] 515s Get:136 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-bit arm64 4.6.0+dfsg-1 [450 kB] 515s Get:137 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-bit64 arm64 4.6.0-1-4 [495 kB] 515s Get:138 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rlang arm64 1.1.5-3 [1706 kB] 518s Get:139 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-cli arm64 3.6.4-1 [1374 kB] 520s Get:140 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-glue arm64 1.8.0-1 [163 kB] 520s Get:141 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-lifecycle all 1.0.5+dfsg-1 [120 kB] 520s Get:142 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 523s Get:143 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-blob all 1.3.0-1 [54.1 kB] 523s Get:144 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-fastmap arm64 1.2.0-1 [70.6 kB] 523s Get:145 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-cachem arm64 1.1.0-1 [74.1 kB] 523s Get:146 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-memoise all 2.0.1-1build1 [54.5 kB] 523s Get:147 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-pkgconfig all 2.0.3-2build2 [20.4 kB] 523s Get:148 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-plogr all 0.2.0-3build2 [15.8 kB] 523s Get:149 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-cpp11 all 0.5.3-1 [242 kB] 523s Get:150 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rsqlite arm64 2.3.9-1 [1247 kB] 525s Get:151 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-curl arm64 7.0.0+dfsg-1 [202 kB] 525s Get:152 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-jsonlite arm64 1.9.1+dfsg-1 [445 kB] 525s Get:153 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-mime arm64 0.12-2 [35.8 kB] 525s Get:154 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-sys arm64 3.4.3-1 [45.2 kB] 525s Get:155 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-askpass arm64 1.2.1-1 [24.8 kB] 525s Get:156 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-openssl arm64 2.3.2+dfsg-1 [406 kB] 525s Get:157 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-r6 all 2.6.1-1 [101 kB] 525s Get:158 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 525s Get:159 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-png arm64 0.1-8-1build2 [40.1 kB] 525s Get:160 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB] 525s Get:161 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-xvector arm64 0.46.0-2 [618 kB] 526s Get:162 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-ucsc.utils all 1.2.0+ds-2 [77.2 kB] 526s Get:163 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB] 550s Get:164 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-genomeinfodb all 1.42.3+dfsg-1 [3887 kB] 556s Get:165 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-crayon all 1.5.3-1 [165 kB] 556s Get:166 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-biostrings arm64 2.74.1+dfsg-2 [13.3 MB] 577s Get:167 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-keggrest all 1.46.0+dfsg-3 [183 kB] 577s Get:168 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-annotationdbi all 1.68.0-2 [4857 kB] 589s Get:169 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-genomicranges arm64 1.58.0+dfsg-2 [2083 kB] 593s Get:170 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-lazyeval arm64 0.2.2-1build2 [145 kB] 593s Get:171 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-annotationfilter all 1.30.0+dfsg-2 [247 kB] 593s Get:172 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-generics all 0.1.4-1 [84.0 kB] 593s Get:173 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 593s Get:174 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 593s Get:175 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-pillar all 1.11.1+dfsg-1 [456 kB] 593s Get:176 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-fansi arm64 1.0.6-2 [627 kB] 595s Get:177 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-3 [420 kB] 595s Get:178 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 595s Get:179 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-tidyselect arm64 1.2.1+dfsg-1 [222 kB] 595s Get:180 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-dplyr arm64 1.1.4-4 [1534 kB] 597s Get:181 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-purrr arm64 1.0.4-1 [552 kB] 598s Get:182 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-stringi arm64 1.8.4-1build2 [901 kB] 600s Get:183 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB] 600s Get:184 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-tidyr arm64 1.3.1-1 [1154 kB] 602s Get:185 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-dbplyr all 2.5.1+dfsg-1 [1237 kB] 604s Get:186 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-filelock arm64 1.0.3-1 [29.7 kB] 604s Get:187 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-biocfilecache all 2.14.0+dfsg-2 [300 kB] 605s Get:188 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-biocio all 1.16.0+dfsg-2 [209 kB] 605s Get:189 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-formatr all 1.14-2 [152 kB] 605s Get:190 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-lambda.r all 1.2.4-2build2 [118 kB] 605s Get:191 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-futile.options all 1.0.1-3build2 [20.5 kB] 605s Get:192 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-futile.logger all 1.4.3-4build2 [98.4 kB] 605s Get:193 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-snow all 1:0.4.4-2build1 [98.7 kB] 605s Get:194 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-codetools all 0.2-20-1build1 [91.1 kB] 605s Get:195 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-bh all 1.84.0-1 [5962 B] 605s Get:196 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-biocparallel arm64 1.40.0-2 [1333 kB] 608s Get:197 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-hms all 1.1.4-1 [102 kB] 608s Get:198 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-prettyunits all 1.2.0-1 [162 kB] 608s Get:199 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-progress all 1.2.3-1 [91.9 kB] 608s Get:200 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rappdirs arm64 0.3.3-1build1 [49.5 kB] 608s Get:201 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-httr2 all 1.1.1-2 [752 kB] 609s Get:202 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-digest arm64 0.6.39-1 [196 kB] 609s Get:203 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-xml2 arm64 1.4.1-1 [326 kB] 609s Get:204 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-biomart all 2.62.1+dfsg-1 [444 kB] 609s Get:205 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-farver arm64 2.1.2-1 [1344 kB] 611s Get:206 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-labeling all 0.4.3-1 [62.1 kB] 611s Get:207 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build2 [54.0 kB] 611s Get:208 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-viridislite all 0.4.3-1 [1088 kB] 613s Get:209 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-scales all 1.4.0-1 [725 kB] 614s Get:210 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-gtable all 0.3.6+dfsg-1 [199 kB] 614s Get:211 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-isoband arm64 0.2.7-1 [1481 kB] 617s Get:212 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-s7 arm64 0.2.0-1 [329 kB] 617s Get:213 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 r-cran-ggplot2 all 4.0.2+dfsg-1 [4941 kB] 626s Get:214 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-cluster arm64 2.1.8.2-1 [568 kB] 628s Get:215 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-lattice arm64 0.22-7-1 [1365 kB] 630s Get:216 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-matrix arm64 1.7-4-1 [4146 kB] 637s Get:217 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-survival arm64 3.8-6-1 [8270 kB] 651s Get:218 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rpart arm64 4.1.24-1build1 [665 kB] 652s Get:219 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-nnet arm64 7.3-20-1 [113 kB] 652s Get:220 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-foreign arm64 0.8.91-1 [243 kB] 652s Get:221 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-gridextra all 2.3-3build2 [1032 kB] 653s Get:222 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-data.table arm64 1.17.0+dfsg-1 [2129 kB] 657s Get:223 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-evaluate all 1.0.5-1 [117 kB] 657s Get:224 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-xfun arm64 0.55+dfsg-1 [587 kB] 658s Get:225 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 658s Get:226 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-yaml arm64 2.3.10-1 [108 kB] 658s Get:227 http://ftpmaster.internal/ubuntu resolute/main arm64 libjs-mathjax all 2.7.9+dfsg-1build1 [6017 kB] 669s Get:228 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-knitr all 1.51+dfsg-1 [847 kB] 671s Get:229 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-backports arm64 1.5.0-2 [121 kB] 671s Get:230 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-checkmate arm64 2.3.2-1 [706 kB] 672s Get:231 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-base64enc arm64 0.1-3-3build1 [28.5 kB] 672s Get:232 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-htmltools arm64 0.5.8.1-1 [373 kB] 672s Get:233 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-5 [13.7 kB] 672s Get:234 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-fs arm64 1.6.5+dfsg-1 [244 kB] 672s Get:235 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-sass arm64 0.4.9+dfsg-1 [957 kB] 674s Get:236 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-bslib all 0.9.0+dfsg-3build1 [4560 kB] 686s Get:237 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-fontawesome all 0.5.3-1 [1331 kB] 688s Get:238 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-tinytex all 0.58-1 [148 kB] 688s Get:239 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-modernizr all 3.13.0-0.1build1 [100 kB] 688s Get:240 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-littler arm64 0.3.22-1 [85.1 kB] 688s Get:241 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 689s Get:242 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rcpp arm64 1.1.0-1 [2011 kB] 692s Get:243 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-later arm64 1.4.1+dfsg-1 [141 kB] 692s Get:244 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-promises arm64 1.3.2+dfsg-1 [290 kB] 692s Get:245 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-httpuv arm64 1.6.15+dfsg-1 [489 kB] 692s Get:246 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-xtable all 1:1.8-4-2build1 [691 kB] 693s Get:247 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 693s Get:248 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-commonmark arm64 1.9.5-1 [130 kB] 693s Get:249 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 693s Get:250 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB] 699s Get:251 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rmarkdown all 2.30+dfsg-1 [1501 kB] 701s Get:252 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-htmlwidgets all 1.6.4+dfsg-1 [123 kB] 701s Get:253 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rstudioapi all 0.18.0-1 [326 kB] 701s Get:254 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-htmltable all 2.4.3-1 [388 kB] 701s Get:255 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-colorspace arm64 2.1-1+dfsg-1 [1563 kB] 705s Get:256 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-formula all 1.2-5-1 [158 kB] 705s Get:257 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-chron arm64 2.3-62-1 [188 kB] 705s Get:258 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-jpeg arm64 0.1-10-1 [30.8 kB] 706s Get:259 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-deldir arm64 2.0-4-1build1 [270 kB] 707s Get:260 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rcppeigen arm64 0.3.4.0.2-1 [1422 kB] 710s Get:261 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-interp arm64 1.1-6-1 [1433 kB] 712s Get:262 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-mass arm64 7.3-65-1 [1109 kB] 715s Get:263 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-latticeextra all 0.6-31-1 [2177 kB] 719s Get:264 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-acepack arm64 1.6.3-1 [84.3 kB] 719s Get:265 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-viridis all 0.6.5-1 [2770 kB] 724s Get:266 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-hmisc arm64 5.2-5-2 [3610 kB] 730s Get:267 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-dichromat all 1:2.0-0.1-1 [148 kB] 730s Get:268 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-matrixstats arm64 1.5.0-1 [496 kB] 730s Get:269 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-matrixgenerics all 1.18.1-1 [450 kB] 730s Get:270 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-abind all 1.4-8-1build1 [67.0 kB] 730s Get:271 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-s4arrays arm64 1.6.0+dfsg-2 [698 kB] 731s Get:272 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-sparsearray arm64 1.6.2+dfsg-2 [1369 kB] 734s Get:273 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-delayedarray arm64 0.32.0+dfsg-2 [2064 kB] 738s Get:274 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-summarizedexperiment all 1.36.0+dfsg-2 [1109 kB] 739s Get:275 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-bitops arm64 1.0-9-1 [30.2 kB] 739s Get:276 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-rhtslib arm64 3.2.0+dfsg-2 [1429 kB] 742s Get:277 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-rsamtools arm64 2.22.0+dfsg-2 [3668 kB] 753s Get:278 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-genomicalignments arm64 1.42.0-2 [2164 kB] 757s Get:279 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-xml arm64 3.99-0.20-1 [1749 kB] 760s Get:280 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rcurl arm64 1.98-1.16+dfsg-1 [806 kB] 762s Get:281 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rjson arm64 0.2.23-1 [104 kB] 762s Get:282 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-restfulr arm64 0.0.15-1 [380 kB] 762s Get:283 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-rtracklayer arm64 1.66.0-3 [5216 kB] 771s Get:284 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-genomicfeatures all 1.58.0+dfsg-2 [937 kB] 773s Get:285 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-bsgenome all 1.74.0-2 [7001 kB] 785s Get:286 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-variantannotation arm64 1.52.0-2 [3592 kB] 790s Get:287 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-protgenerics all 1.38.0-2 [239 kB] 790s Get:288 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-ensembldb all 2.30.0+dfsg-3 [1520 kB] 794s Get:289 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-biovizbase arm64 1.54.0-2 [2857 kB] 799s Get:290 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-plyr arm64 1.8.9-1 [831 kB] 801s Get:291 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-reshape2 arm64 1.4.4-2build2 [118 kB] 801s Get:292 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-fastcluster arm64 1.3.0-1build1 [191 kB] 801s Get:293 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-gviz all 1.50.0+dfsg-2 [4881 kB] 809s Get:294 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-bioc-cummerbund all 2.48.0-2 [2896 kB] 815s Preconfiguring packages ... 815s Fetched 371 MB in 11min 3s (560 kB/s) 815s Selecting previously unselected package libc-dev-bin. 815s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 136600 files and directories currently installed.) 815s Preparing to unpack .../000-libc-dev-bin_2.42-2ubuntu4_arm64.deb ... 815s Unpacking libc-dev-bin (2.42-2ubuntu4) ... 815s Selecting previously unselected package linux-libc-dev:arm64. 815s Preparing to unpack .../001-linux-libc-dev_6.19.0-3.3_arm64.deb ... 815s Unpacking linux-libc-dev:arm64 (6.19.0-3.3) ... 815s Selecting previously unselected package libcrypt-dev:arm64. 815s Preparing to unpack .../002-libcrypt-dev_1%3a4.5.1-1_arm64.deb ... 815s Unpacking libcrypt-dev:arm64 (1:4.5.1-1) ... 815s Selecting previously unselected package rpcsvc-proto. 815s Preparing to unpack .../003-rpcsvc-proto_1.4.3-1build1_arm64.deb ... 815s Unpacking rpcsvc-proto (1.4.3-1build1) ... 815s Selecting previously unselected package libc6-dev:arm64. 815s Preparing to unpack .../004-libc6-dev_2.42-2ubuntu4_arm64.deb ... 815s Unpacking libc6-dev:arm64 (2.42-2ubuntu4) ... 815s Selecting previously unselected package libisl23:arm64. 815s Preparing to unpack .../005-libisl23_0.27-1build1_arm64.deb ... 815s Unpacking libisl23:arm64 (0.27-1build1) ... 815s Selecting previously unselected package libmpc3:arm64. 815s Preparing to unpack .../006-libmpc3_1.3.1-2_arm64.deb ... 815s Unpacking libmpc3:arm64 (1.3.1-2) ... 815s Selecting previously unselected package cpp-15-aarch64-linux-gnu. 815s Preparing to unpack .../007-cpp-15-aarch64-linux-gnu_15.2.0-12ubuntu1_arm64.deb ... 815s Unpacking cpp-15-aarch64-linux-gnu (15.2.0-12ubuntu1) ... 816s Selecting previously unselected package cpp-15. 816s Preparing to unpack .../008-cpp-15_15.2.0-12ubuntu1_arm64.deb ... 816s Unpacking cpp-15 (15.2.0-12ubuntu1) ... 816s Selecting previously unselected package cpp-aarch64-linux-gnu. 816s Preparing to unpack .../009-cpp-aarch64-linux-gnu_4%3a15.2.0-4ubuntu1_arm64.deb ... 816s Unpacking cpp-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 816s Selecting previously unselected package cpp. 816s Preparing to unpack .../010-cpp_4%3a15.2.0-4ubuntu1_arm64.deb ... 816s Unpacking cpp (4:15.2.0-4ubuntu1) ... 816s Selecting previously unselected package libcc1-0:arm64. 816s Preparing to unpack .../011-libcc1-0_15.2.0-12ubuntu1_arm64.deb ... 816s Unpacking libcc1-0:arm64 (15.2.0-12ubuntu1) ... 816s Selecting previously unselected package libgomp1:arm64. 816s Preparing to unpack .../012-libgomp1_15.2.0-12ubuntu1_arm64.deb ... 816s Unpacking libgomp1:arm64 (15.2.0-12ubuntu1) ... 816s Selecting previously unselected package libitm1:arm64. 816s Preparing to unpack .../013-libitm1_15.2.0-12ubuntu1_arm64.deb ... 816s Unpacking libitm1:arm64 (15.2.0-12ubuntu1) ... 816s Selecting previously unselected package libasan8:arm64. 816s Preparing to unpack .../014-libasan8_15.2.0-12ubuntu1_arm64.deb ... 816s Unpacking libasan8:arm64 (15.2.0-12ubuntu1) ... 816s Selecting previously unselected package liblsan0:arm64. 816s Preparing to unpack .../015-liblsan0_15.2.0-12ubuntu1_arm64.deb ... 816s Unpacking liblsan0:arm64 (15.2.0-12ubuntu1) ... 816s Selecting previously unselected package libtsan2:arm64. 816s Preparing to unpack .../016-libtsan2_15.2.0-12ubuntu1_arm64.deb ... 816s Unpacking libtsan2:arm64 (15.2.0-12ubuntu1) ... 816s Selecting previously unselected package libubsan1:arm64. 816s Preparing to unpack .../017-libubsan1_15.2.0-12ubuntu1_arm64.deb ... 816s Unpacking libubsan1:arm64 (15.2.0-12ubuntu1) ... 816s Selecting previously unselected package libhwasan0:arm64. 816s Preparing to unpack .../018-libhwasan0_15.2.0-12ubuntu1_arm64.deb ... 816s Unpacking libhwasan0:arm64 (15.2.0-12ubuntu1) ... 816s Selecting previously unselected package libgcc-15-dev:arm64. 816s Preparing to unpack .../019-libgcc-15-dev_15.2.0-12ubuntu1_arm64.deb ... 816s Unpacking libgcc-15-dev:arm64 (15.2.0-12ubuntu1) ... 816s Selecting previously unselected package gcc-15-aarch64-linux-gnu. 816s Preparing to unpack .../020-gcc-15-aarch64-linux-gnu_15.2.0-12ubuntu1_arm64.deb ... 816s Unpacking gcc-15-aarch64-linux-gnu (15.2.0-12ubuntu1) ... 817s Selecting previously unselected package gcc-15. 817s Preparing to unpack .../021-gcc-15_15.2.0-12ubuntu1_arm64.deb ... 817s Unpacking gcc-15 (15.2.0-12ubuntu1) ... 817s Selecting previously unselected package gcc-aarch64-linux-gnu. 817s Preparing to unpack .../022-gcc-aarch64-linux-gnu_4%3a15.2.0-4ubuntu1_arm64.deb ... 817s Unpacking gcc-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 817s Selecting previously unselected package gcc. 817s Preparing to unpack .../023-gcc_4%3a15.2.0-4ubuntu1_arm64.deb ... 817s Unpacking gcc (4:15.2.0-4ubuntu1) ... 817s Selecting previously unselected package libstdc++-15-dev:arm64. 817s Preparing to unpack .../024-libstdc++-15-dev_15.2.0-12ubuntu1_arm64.deb ... 817s Unpacking libstdc++-15-dev:arm64 (15.2.0-12ubuntu1) ... 817s Selecting previously unselected package g++-15-aarch64-linux-gnu. 817s Preparing to unpack .../025-g++-15-aarch64-linux-gnu_15.2.0-12ubuntu1_arm64.deb ... 817s Unpacking g++-15-aarch64-linux-gnu (15.2.0-12ubuntu1) ... 817s Selecting previously unselected package g++-15. 817s Preparing to unpack .../026-g++-15_15.2.0-12ubuntu1_arm64.deb ... 817s Unpacking g++-15 (15.2.0-12ubuntu1) ... 817s Selecting previously unselected package g++-aarch64-linux-gnu. 817s Preparing to unpack .../027-g++-aarch64-linux-gnu_4%3a15.2.0-4ubuntu1_arm64.deb ... 817s Unpacking g++-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 817s Selecting previously unselected package g++. 817s Preparing to unpack .../028-g++_4%3a15.2.0-4ubuntu1_arm64.deb ... 817s Unpacking g++ (4:15.2.0-4ubuntu1) ... 817s Selecting previously unselected package build-essential. 817s Preparing to unpack .../029-build-essential_12.12ubuntu2_arm64.deb ... 817s Unpacking build-essential (12.12ubuntu2) ... 818s Selecting previously unselected package dctrl-tools. 818s Preparing to unpack .../030-dctrl-tools_2.24-3build4_arm64.deb ... 818s Unpacking dctrl-tools (2.24-3build4) ... 818s Selecting previously unselected package fonts-dejavu-mono. 818s Preparing to unpack .../031-fonts-dejavu-mono_2.37-8build1_all.deb ... 818s Unpacking fonts-dejavu-mono (2.37-8build1) ... 818s Selecting previously unselected package fonts-dejavu-core. 818s Preparing to unpack .../032-fonts-dejavu-core_2.37-8build1_all.deb ... 818s Unpacking fonts-dejavu-core (2.37-8build1) ... 818s Selecting previously unselected package fontconfig-config. 818s Preparing to unpack .../033-fontconfig-config_2.17.1-3ubuntu1_arm64.deb ... 818s Unpacking fontconfig-config (2.17.1-3ubuntu1) ... 818s Selecting previously unselected package libfontconfig1:arm64. 818s Preparing to unpack .../034-libfontconfig1_2.17.1-3ubuntu1_arm64.deb ... 818s Unpacking libfontconfig1:arm64 (2.17.1-3ubuntu1) ... 818s Selecting previously unselected package fontconfig. 818s Preparing to unpack .../035-fontconfig_2.17.1-3ubuntu1_arm64.deb ... 818s Unpacking fontconfig (2.17.1-3ubuntu1) ... 818s Selecting previously unselected package fonts-font-awesome. 818s Preparing to unpack .../036-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1build1_all.deb ... 818s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1build1) ... 818s Selecting previously unselected package fonts-glyphicons-halflings. 818s Preparing to unpack .../037-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-6_all.deb ... 818s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-6) ... 818s Selecting previously unselected package fonts-mathjax. 818s Preparing to unpack .../038-fonts-mathjax_2.7.9+dfsg-1build1_all.deb ... 818s Unpacking fonts-mathjax (2.7.9+dfsg-1build1) ... 818s Selecting previously unselected package libgfortran5:arm64. 818s Preparing to unpack .../039-libgfortran5_15.2.0-12ubuntu1_arm64.deb ... 818s Unpacking libgfortran5:arm64 (15.2.0-12ubuntu1) ... 818s Selecting previously unselected package libgfortran-15-dev:arm64. 818s Preparing to unpack .../040-libgfortran-15-dev_15.2.0-12ubuntu1_arm64.deb ... 818s Unpacking libgfortran-15-dev:arm64 (15.2.0-12ubuntu1) ... 818s Selecting previously unselected package gfortran-15-aarch64-linux-gnu. 818s Preparing to unpack .../041-gfortran-15-aarch64-linux-gnu_15.2.0-12ubuntu1_arm64.deb ... 818s Unpacking gfortran-15-aarch64-linux-gnu (15.2.0-12ubuntu1) ... 819s Selecting previously unselected package gfortran-15. 819s Preparing to unpack .../042-gfortran-15_15.2.0-12ubuntu1_arm64.deb ... 819s Unpacking gfortran-15 (15.2.0-12ubuntu1) ... 819s Selecting previously unselected package gfortran-aarch64-linux-gnu. 819s Preparing to unpack .../043-gfortran-aarch64-linux-gnu_4%3a15.2.0-4ubuntu1_arm64.deb ... 819s Unpacking gfortran-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 819s Selecting previously unselected package gfortran. 819s Preparing to unpack .../044-gfortran_4%3a15.2.0-4ubuntu1_arm64.deb ... 819s Unpacking gfortran (4:15.2.0-4ubuntu1) ... 819s Selecting previously unselected package icu-devtools. 819s Preparing to unpack .../045-icu-devtools_78.2-1ubuntu1_arm64.deb ... 819s Unpacking icu-devtools (78.2-1ubuntu1) ... 819s Selecting previously unselected package javascript-common. 819s Preparing to unpack .../046-javascript-common_12+nmu1build1_all.deb ... 819s Unpacking javascript-common (12+nmu1build1) ... 819s Selecting previously unselected package libblas3:arm64. 819s Preparing to unpack .../047-libblas3_3.12.1-7ubuntu1_arm64.deb ... 819s Unpacking libblas3:arm64 (3.12.1-7ubuntu1) ... 819s Selecting previously unselected package libblas-dev:arm64. 819s Preparing to unpack .../048-libblas-dev_3.12.1-7ubuntu1_arm64.deb ... 819s Unpacking libblas-dev:arm64 (3.12.1-7ubuntu1) ... 819s Selecting previously unselected package libboost1.90-dev:arm64. 819s Preparing to unpack .../049-libboost1.90-dev_1.90.0-2ubuntu1_arm64.deb ... 819s Unpacking libboost1.90-dev:arm64 (1.90.0-2ubuntu1) ... 820s Selecting previously unselected package libboost-dev:arm64. 820s Preparing to unpack .../050-libboost-dev_1.90.0.0ubuntu3_arm64.deb ... 820s Unpacking libboost-dev:arm64 (1.90.0.0ubuntu3) ... 820s Selecting previously unselected package libbz2-dev:arm64. 820s Preparing to unpack .../051-libbz2-dev_1.0.8-6build2_arm64.deb ... 820s Unpacking libbz2-dev:arm64 (1.0.8-6build2) ... 820s Selecting previously unselected package libpixman-1-0:arm64. 820s Preparing to unpack .../052-libpixman-1-0_0.46.4-1_arm64.deb ... 820s Unpacking libpixman-1-0:arm64 (0.46.4-1) ... 821s Selecting previously unselected package libxcb-render0:arm64. 821s Preparing to unpack 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libsm6:arm64. 824s Preparing to unpack .../105-libsm6_2%3a1.2.6-1build1_arm64.deb ... 824s Unpacking libsm6:arm64 (2:1.2.6-1build1) ... 824s Selecting previously unselected package libtcl8.6:arm64. 824s Preparing to unpack .../106-libtcl8.6_8.6.17+dfsg-1build1_arm64.deb ... 824s Unpacking libtcl8.6:arm64 (8.6.17+dfsg-1build1) ... 824s Selecting previously unselected package libjbig0:arm64. 824s Preparing to unpack .../107-libjbig0_2.1-6.1ubuntu3_arm64.deb ... 824s Unpacking libjbig0:arm64 (2.1-6.1ubuntu3) ... 824s Selecting previously unselected package libwebp7:arm64. 824s Preparing to unpack .../108-libwebp7_1.5.0-0.1build1_arm64.deb ... 824s Unpacking libwebp7:arm64 (1.5.0-0.1build1) ... 824s Selecting previously unselected package libtiff6:arm64. 824s Preparing to unpack .../109-libtiff6_4.7.0-3ubuntu3_arm64.deb ... 824s Unpacking libtiff6:arm64 (4.7.0-3ubuntu3) ... 824s Selecting previously unselected package libxft2:arm64. 824s Preparing to unpack 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.../138-r-cran-cli_3.6.4-1_arm64.deb ... 827s Unpacking r-cran-cli (3.6.4-1) ... 827s Selecting previously unselected package r-cran-glue. 827s Preparing to unpack .../139-r-cran-glue_1.8.0-1_arm64.deb ... 827s Unpacking r-cran-glue (1.8.0-1) ... 827s Selecting previously unselected package r-cran-lifecycle. 827s Preparing to unpack .../140-r-cran-lifecycle_1.0.5+dfsg-1_all.deb ... 827s Unpacking r-cran-lifecycle (1.0.5+dfsg-1) ... 827s Selecting previously unselected package r-cran-vctrs. 827s Preparing to unpack .../141-r-cran-vctrs_0.6.5-1_arm64.deb ... 827s Unpacking r-cran-vctrs (0.6.5-1) ... 827s Selecting previously unselected package r-cran-blob. 827s Preparing to unpack .../142-r-cran-blob_1.3.0-1_all.deb ... 827s Unpacking r-cran-blob (1.3.0-1) ... 827s Selecting previously unselected package r-cran-fastmap. 827s Preparing to unpack .../143-r-cran-fastmap_1.2.0-1_arm64.deb ... 827s Unpacking r-cran-fastmap (1.2.0-1) ... 827s Selecting previously unselected package r-cran-cachem. 827s Preparing to unpack .../144-r-cran-cachem_1.1.0-1_arm64.deb ... 827s Unpacking r-cran-cachem (1.1.0-1) ... 827s Selecting previously unselected package r-cran-memoise. 827s Preparing to unpack .../145-r-cran-memoise_2.0.1-1build1_all.deb ... 827s Unpacking r-cran-memoise (2.0.1-1build1) ... 827s Selecting previously unselected package r-cran-pkgconfig. 827s Preparing to unpack .../146-r-cran-pkgconfig_2.0.3-2build2_all.deb ... 827s Unpacking r-cran-pkgconfig (2.0.3-2build2) ... 827s Selecting previously unselected package r-cran-plogr. 827s Preparing to unpack .../147-r-cran-plogr_0.2.0-3build2_all.deb ... 827s Unpacking r-cran-plogr (0.2.0-3build2) ... 827s Selecting previously unselected package r-cran-cpp11. 827s Preparing to unpack .../148-r-cran-cpp11_0.5.3-1_all.deb ... 827s Unpacking r-cran-cpp11 (0.5.3-1) ... 827s Selecting previously unselected package r-cran-rsqlite. 827s Preparing to unpack .../149-r-cran-rsqlite_2.3.9-1_arm64.deb ... 827s Unpacking r-cran-rsqlite (2.3.9-1) ... 827s Selecting previously unselected package r-cran-curl. 827s Preparing to unpack .../150-r-cran-curl_7.0.0+dfsg-1_arm64.deb ... 827s Unpacking r-cran-curl (7.0.0+dfsg-1) ... 827s Selecting previously unselected package r-cran-jsonlite. 827s Preparing to unpack .../151-r-cran-jsonlite_1.9.1+dfsg-1_arm64.deb ... 827s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ... 827s Selecting previously unselected package r-cran-mime. 827s Preparing to unpack .../152-r-cran-mime_0.12-2_arm64.deb ... 827s Unpacking r-cran-mime (0.12-2) ... 827s Selecting previously unselected package r-cran-sys. 827s Preparing to unpack .../153-r-cran-sys_3.4.3-1_arm64.deb ... 827s Unpacking r-cran-sys (3.4.3-1) ... 827s Selecting previously unselected package r-cran-askpass. 827s Preparing to unpack .../154-r-cran-askpass_1.2.1-1_arm64.deb ... 827s Unpacking r-cran-askpass (1.2.1-1) ... 827s Selecting previously unselected package r-cran-openssl. 827s Preparing to unpack .../155-r-cran-openssl_2.3.2+dfsg-1_arm64.deb ... 827s Unpacking r-cran-openssl (2.3.2+dfsg-1) ... 827s Selecting previously unselected package r-cran-r6. 827s Preparing to unpack .../156-r-cran-r6_2.6.1-1_all.deb ... 827s Unpacking r-cran-r6 (2.6.1-1) ... 828s Selecting previously unselected package r-cran-httr. 828s Preparing to unpack .../157-r-cran-httr_1.4.7+dfsg-1_all.deb ... 828s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 828s Selecting previously unselected package r-cran-png. 828s Preparing to unpack .../158-r-cran-png_0.1-8-1build2_arm64.deb ... 828s Unpacking r-cran-png (0.1-8-1build2) ... 828s Selecting previously unselected package r-bioc-zlibbioc. 828s Preparing to unpack .../159-r-bioc-zlibbioc_1.52.0+dfsg-2_all.deb ... 828s Unpacking r-bioc-zlibbioc (1.52.0+dfsg-2) ... 828s Selecting previously unselected package r-bioc-xvector. 828s Preparing to unpack .../160-r-bioc-xvector_0.46.0-2_arm64.deb ... 828s Unpacking r-bioc-xvector (0.46.0-2) ... 828s Selecting previously unselected package r-bioc-ucsc.utils. 828s Preparing to unpack .../161-r-bioc-ucsc.utils_1.2.0+ds-2_all.deb ... 828s Unpacking r-bioc-ucsc.utils (1.2.0+ds-2) ... 828s Selecting previously unselected package r-bioc-genomeinfodbdata. 828s Preparing to unpack .../162-r-bioc-genomeinfodbdata_1.2.13-2_all.deb ... 828s Unpacking r-bioc-genomeinfodbdata (1.2.13-2) ... 828s Selecting previously unselected package r-bioc-genomeinfodb. 828s Preparing to unpack .../163-r-bioc-genomeinfodb_1.42.3+dfsg-1_all.deb ... 828s Unpacking r-bioc-genomeinfodb (1.42.3+dfsg-1) ... 828s Selecting previously unselected package r-cran-crayon. 828s Preparing to unpack .../164-r-cran-crayon_1.5.3-1_all.deb ... 828s Unpacking r-cran-crayon (1.5.3-1) ... 828s Selecting previously unselected package r-bioc-biostrings. 828s Preparing to unpack .../165-r-bioc-biostrings_2.74.1+dfsg-2_arm64.deb ... 828s Unpacking r-bioc-biostrings (2.74.1+dfsg-2) ... 828s Selecting previously unselected package r-bioc-keggrest. 828s Preparing to unpack .../166-r-bioc-keggrest_1.46.0+dfsg-3_all.deb ... 828s Unpacking r-bioc-keggrest (1.46.0+dfsg-3) ... 828s Selecting previously unselected package r-bioc-annotationdbi. 828s Preparing to unpack .../167-r-bioc-annotationdbi_1.68.0-2_all.deb ... 828s Unpacking r-bioc-annotationdbi (1.68.0-2) ... 828s Selecting previously unselected package r-bioc-genomicranges. 828s Preparing to unpack .../168-r-bioc-genomicranges_1.58.0+dfsg-2_arm64.deb ... 828s Unpacking r-bioc-genomicranges (1.58.0+dfsg-2) ... 828s Selecting previously unselected package r-cran-lazyeval. 828s Preparing to unpack .../169-r-cran-lazyeval_0.2.2-1build2_arm64.deb ... 828s Unpacking r-cran-lazyeval (0.2.2-1build2) ... 828s Selecting previously unselected package r-bioc-annotationfilter. 828s Preparing to unpack .../170-r-bioc-annotationfilter_1.30.0+dfsg-2_all.deb ... 828s Unpacking r-bioc-annotationfilter (1.30.0+dfsg-2) ... 828s Selecting previously unselected package r-cran-generics. 828s Preparing to unpack .../171-r-cran-generics_0.1.4-1_all.deb ... 828s Unpacking r-cran-generics (0.1.4-1) ... 828s Selecting previously unselected package r-cran-magrittr. 828s Preparing to unpack .../172-r-cran-magrittr_2.0.3-1_arm64.deb ... 828s Unpacking r-cran-magrittr (2.0.3-1) ... 828s Selecting previously unselected package r-cran-utf8. 828s Preparing to unpack .../173-r-cran-utf8_1.2.4-1_arm64.deb ... 828s Unpacking r-cran-utf8 (1.2.4-1) ... 828s Selecting previously unselected package r-cran-pillar. 829s Preparing to unpack .../174-r-cran-pillar_1.11.1+dfsg-1_all.deb ... 829s Unpacking r-cran-pillar (1.11.1+dfsg-1) ... 829s Selecting previously unselected package r-cran-fansi. 829s Preparing to unpack .../175-r-cran-fansi_1.0.6-2_arm64.deb ... 829s Unpacking r-cran-fansi (1.0.6-2) ... 829s Selecting previously unselected package r-cran-tibble. 829s Preparing to unpack .../176-r-cran-tibble_3.2.1+dfsg-3_arm64.deb ... 829s Unpacking r-cran-tibble (3.2.1+dfsg-3) ... 829s Selecting previously unselected package r-cran-withr. 829s Preparing to unpack .../177-r-cran-withr_3.0.2+dfsg-1_all.deb ... 829s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 829s Selecting previously unselected package r-cran-tidyselect. 829s Preparing to unpack .../178-r-cran-tidyselect_1.2.1+dfsg-1_arm64.deb ... 829s Unpacking r-cran-tidyselect (1.2.1+dfsg-1) ... 829s Selecting previously unselected package r-cran-dplyr. 829s Preparing to unpack .../179-r-cran-dplyr_1.1.4-4_arm64.deb ... 829s Unpacking r-cran-dplyr (1.1.4-4) ... 829s Selecting previously unselected package r-cran-purrr. 829s Preparing to unpack .../180-r-cran-purrr_1.0.4-1_arm64.deb ... 829s Unpacking r-cran-purrr (1.0.4-1) ... 829s Selecting previously unselected package r-cran-stringi. 829s Preparing to unpack .../181-r-cran-stringi_1.8.4-1build2_arm64.deb ... 829s Unpacking r-cran-stringi (1.8.4-1build2) ... 829s Selecting previously unselected package r-cran-stringr. 829s Preparing to unpack .../182-r-cran-stringr_1.5.1-1_all.deb ... 829s Unpacking r-cran-stringr (1.5.1-1) ... 829s Selecting previously unselected package r-cran-tidyr. 829s Preparing to unpack .../183-r-cran-tidyr_1.3.1-1_arm64.deb ... 829s Unpacking r-cran-tidyr (1.3.1-1) ... 829s Selecting previously unselected package r-cran-dbplyr. 829s Preparing to unpack .../184-r-cran-dbplyr_2.5.1+dfsg-1_all.deb ... 829s Unpacking r-cran-dbplyr (2.5.1+dfsg-1) ... 829s Selecting previously unselected package r-cran-filelock. 829s Preparing to unpack .../185-r-cran-filelock_1.0.3-1_arm64.deb ... 829s Unpacking r-cran-filelock (1.0.3-1) ... 829s Selecting previously unselected package r-bioc-biocfilecache. 829s Preparing to unpack .../186-r-bioc-biocfilecache_2.14.0+dfsg-2_all.deb ... 829s Unpacking r-bioc-biocfilecache (2.14.0+dfsg-2) ... 829s Selecting previously unselected package r-bioc-biocio. 829s Preparing to unpack .../187-r-bioc-biocio_1.16.0+dfsg-2_all.deb ... 829s Unpacking r-bioc-biocio (1.16.0+dfsg-2) ... 829s Selecting previously unselected package r-cran-formatr. 829s Preparing to unpack .../188-r-cran-formatr_1.14-2_all.deb ... 829s Unpacking r-cran-formatr (1.14-2) ... 829s Selecting previously unselected package r-cran-lambda.r. 829s Preparing to unpack .../189-r-cran-lambda.r_1.2.4-2build2_all.deb ... 829s Unpacking r-cran-lambda.r (1.2.4-2build2) ... 829s Selecting previously unselected package r-cran-futile.options. 829s Preparing to unpack .../190-r-cran-futile.options_1.0.1-3build2_all.deb ... 829s Unpacking r-cran-futile.options (1.0.1-3build2) ... 829s Selecting previously unselected package r-cran-futile.logger. 829s Preparing to unpack .../191-r-cran-futile.logger_1.4.3-4build2_all.deb ... 829s Unpacking r-cran-futile.logger (1.4.3-4build2) ... 830s Selecting previously unselected package r-cran-snow. 830s Preparing to unpack .../192-r-cran-snow_1%3a0.4.4-2build1_all.deb ... 830s Unpacking r-cran-snow (1:0.4.4-2build1) ... 830s Selecting previously unselected package r-cran-codetools. 830s Preparing to unpack .../193-r-cran-codetools_0.2-20-1build1_all.deb ... 830s Unpacking r-cran-codetools (0.2-20-1build1) ... 830s Selecting previously unselected package r-cran-bh. 830s Preparing to unpack .../194-r-cran-bh_1.84.0-1_all.deb ... 830s Unpacking r-cran-bh (1.84.0-1) ... 830s Selecting previously unselected package r-bioc-biocparallel. 830s Preparing to unpack .../195-r-bioc-biocparallel_1.40.0-2_arm64.deb ... 830s Unpacking r-bioc-biocparallel (1.40.0-2) ... 830s Selecting previously unselected package r-cran-hms. 830s Preparing to unpack .../196-r-cran-hms_1.1.4-1_all.deb ... 830s Unpacking r-cran-hms (1.1.4-1) ... 830s Selecting previously unselected package r-cran-prettyunits. 830s Preparing to unpack .../197-r-cran-prettyunits_1.2.0-1_all.deb ... 830s Unpacking r-cran-prettyunits (1.2.0-1) ... 830s Selecting previously unselected package r-cran-progress. 830s Preparing to unpack .../198-r-cran-progress_1.2.3-1_all.deb ... 830s Unpacking r-cran-progress (1.2.3-1) ... 830s Selecting previously unselected package r-cran-rappdirs. 830s Preparing to unpack .../199-r-cran-rappdirs_0.3.3-1build1_arm64.deb ... 830s Unpacking r-cran-rappdirs (0.3.3-1build1) ... 830s Selecting previously unselected package r-cran-httr2. 830s Preparing to unpack .../200-r-cran-httr2_1.1.1-2_all.deb ... 830s Unpacking r-cran-httr2 (1.1.1-2) ... 830s Selecting previously unselected package r-cran-digest. 830s Preparing to unpack .../201-r-cran-digest_0.6.39-1_arm64.deb ... 830s Unpacking r-cran-digest (0.6.39-1) ... 830s Selecting previously unselected package r-cran-xml2. 830s Preparing to unpack .../202-r-cran-xml2_1.4.1-1_arm64.deb ... 830s Unpacking r-cran-xml2 (1.4.1-1) ... 830s Selecting previously unselected package r-bioc-biomart. 830s Preparing to unpack .../203-r-bioc-biomart_2.62.1+dfsg-1_all.deb ... 830s Unpacking r-bioc-biomart (2.62.1+dfsg-1) ... 830s Selecting previously unselected package r-cran-farver. 830s Preparing to unpack .../204-r-cran-farver_2.1.2-1_arm64.deb ... 830s Unpacking r-cran-farver (2.1.2-1) ... 830s Selecting previously unselected package r-cran-labeling. 830s Preparing to unpack .../205-r-cran-labeling_0.4.3-1_all.deb ... 830s Unpacking r-cran-labeling (0.4.3-1) ... 830s Selecting previously unselected package r-cran-rcolorbrewer. 830s Preparing to unpack .../206-r-cran-rcolorbrewer_1.1-3-1build2_all.deb ... 830s Unpacking r-cran-rcolorbrewer (1.1-3-1build2) ... 830s Selecting previously unselected package r-cran-viridislite. 830s Preparing to unpack .../207-r-cran-viridislite_0.4.3-1_all.deb ... 830s Unpacking r-cran-viridislite (0.4.3-1) ... 830s Selecting previously unselected package r-cran-scales. 830s Preparing to unpack .../208-r-cran-scales_1.4.0-1_all.deb ... 830s Unpacking r-cran-scales (1.4.0-1) ... 830s Selecting previously unselected package r-cran-gtable. 830s Preparing to unpack .../209-r-cran-gtable_0.3.6+dfsg-1_all.deb ... 830s Unpacking r-cran-gtable (0.3.6+dfsg-1) ... 830s Selecting previously unselected package r-cran-isoband. 831s Preparing to unpack .../210-r-cran-isoband_0.2.7-1_arm64.deb ... 831s Unpacking r-cran-isoband (0.2.7-1) ... 831s Selecting previously unselected package r-cran-s7. 831s Preparing to unpack .../211-r-cran-s7_0.2.0-1_arm64.deb ... 831s Unpacking r-cran-s7 (0.2.0-1) ... 831s Selecting previously unselected package r-cran-ggplot2. 831s Preparing to unpack .../212-r-cran-ggplot2_4.0.2+dfsg-1_all.deb ... 831s Unpacking r-cran-ggplot2 (4.0.2+dfsg-1) ... 831s Selecting previously unselected package r-cran-cluster. 831s Preparing to unpack .../213-r-cran-cluster_2.1.8.2-1_arm64.deb ... 831s Unpacking r-cran-cluster (2.1.8.2-1) ... 831s Selecting previously unselected package r-cran-lattice. 831s Preparing to unpack .../214-r-cran-lattice_0.22-7-1_arm64.deb ... 831s Unpacking r-cran-lattice (0.22-7-1) ... 831s Selecting previously unselected package r-cran-matrix. 831s Preparing to unpack .../215-r-cran-matrix_1.7-4-1_arm64.deb ... 831s Unpacking r-cran-matrix (1.7-4-1) ... 831s Selecting previously unselected package r-cran-survival. 831s Preparing to unpack .../216-r-cran-survival_3.8-6-1_arm64.deb ... 831s Unpacking r-cran-survival (3.8-6-1) ... 831s Selecting previously unselected package r-cran-rpart. 831s Preparing to unpack .../217-r-cran-rpart_4.1.24-1build1_arm64.deb ... 831s Unpacking r-cran-rpart (4.1.24-1build1) ... 831s Selecting previously unselected package r-cran-nnet. 831s Preparing to unpack .../218-r-cran-nnet_7.3-20-1_arm64.deb ... 831s Unpacking r-cran-nnet (7.3-20-1) ... 831s Selecting previously unselected package r-cran-foreign. 831s Preparing to unpack .../219-r-cran-foreign_0.8.91-1_arm64.deb ... 831s Unpacking r-cran-foreign (0.8.91-1) ... 831s Selecting previously unselected package r-cran-gridextra. 831s Preparing to unpack .../220-r-cran-gridextra_2.3-3build2_all.deb ... 831s Unpacking r-cran-gridextra (2.3-3build2) ... 831s Selecting previously unselected package r-cran-data.table. 831s Preparing to unpack .../221-r-cran-data.table_1.17.0+dfsg-1_arm64.deb ... 831s Unpacking r-cran-data.table (1.17.0+dfsg-1) ... 831s Selecting previously unselected package r-cran-evaluate. 831s Preparing to unpack .../222-r-cran-evaluate_1.0.5-1_all.deb ... 831s Unpacking r-cran-evaluate (1.0.5-1) ... 831s Selecting previously unselected package r-cran-xfun. 831s Preparing to unpack .../223-r-cran-xfun_0.55+dfsg-1_arm64.deb ... 831s Unpacking r-cran-xfun (0.55+dfsg-1) ... 831s Selecting previously unselected package r-cran-highr. 832s Preparing to unpack .../224-r-cran-highr_0.11+dfsg-1_all.deb ... 832s Unpacking r-cran-highr (0.11+dfsg-1) ... 832s Selecting previously unselected package r-cran-yaml. 832s Preparing to unpack .../225-r-cran-yaml_2.3.10-1_arm64.deb ... 832s Unpacking r-cran-yaml (2.3.10-1) ... 832s Selecting previously unselected package libjs-mathjax. 832s Preparing to unpack .../226-libjs-mathjax_2.7.9+dfsg-1build1_all.deb ... 832s Unpacking libjs-mathjax (2.7.9+dfsg-1build1) ... 832s Selecting previously unselected package r-cran-knitr. 832s Preparing to unpack .../227-r-cran-knitr_1.51+dfsg-1_all.deb ... 832s Unpacking r-cran-knitr (1.51+dfsg-1) ... 832s Selecting previously unselected package r-cran-backports. 832s Preparing to unpack .../228-r-cran-backports_1.5.0-2_arm64.deb ... 832s Unpacking r-cran-backports (1.5.0-2) ... 832s Selecting previously unselected package r-cran-checkmate. 832s Preparing to unpack .../229-r-cran-checkmate_2.3.2-1_arm64.deb ... 832s Unpacking r-cran-checkmate (2.3.2-1) ... 832s Selecting previously unselected package r-cran-base64enc. 832s Preparing to unpack .../230-r-cran-base64enc_0.1-3-3build1_arm64.deb ... 832s Unpacking r-cran-base64enc (0.1-3-3build1) ... 832s Selecting previously unselected package r-cran-htmltools. 832s Preparing to unpack .../231-r-cran-htmltools_0.5.8.1-1_arm64.deb ... 832s Unpacking r-cran-htmltools (0.5.8.1-1) ... 832s Selecting previously unselected package r-cran-jquerylib. 832s Preparing to unpack .../232-r-cran-jquerylib_0.1.4+dfsg-5_all.deb ... 832s Unpacking r-cran-jquerylib (0.1.4+dfsg-5) ... 832s Selecting previously unselected package r-cran-fs. 832s Preparing to unpack .../233-r-cran-fs_1.6.5+dfsg-1_arm64.deb ... 832s Unpacking r-cran-fs (1.6.5+dfsg-1) ... 832s Selecting previously unselected package r-cran-sass. 832s Preparing to unpack .../234-r-cran-sass_0.4.9+dfsg-1_arm64.deb ... 832s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 833s Selecting previously unselected package r-cran-bslib. 833s Preparing to unpack .../235-r-cran-bslib_0.9.0+dfsg-3build1_all.deb ... 833s Unpacking r-cran-bslib (0.9.0+dfsg-3build1) ... 833s Selecting previously unselected package r-cran-fontawesome. 833s Preparing to unpack .../236-r-cran-fontawesome_0.5.3-1_all.deb ... 833s Unpacking r-cran-fontawesome (0.5.3-1) ... 833s Selecting previously unselected package r-cran-tinytex. 833s Preparing to unpack .../237-r-cran-tinytex_0.58-1_all.deb ... 833s Unpacking r-cran-tinytex (0.58-1) ... 833s Selecting previously unselected package libjs-modernizr. 833s Preparing to unpack .../238-libjs-modernizr_3.13.0-0.1build1_all.deb ... 833s Unpacking libjs-modernizr (3.13.0-0.1build1) ... 833s Selecting previously unselected package r-cran-littler. 833s Preparing to unpack .../239-r-cran-littler_0.3.22-1_arm64.deb ... 833s Unpacking r-cran-littler (0.3.22-1) ... 833s Selecting previously unselected package r-cran-pkgkitten. 833s Preparing to unpack .../240-r-cran-pkgkitten_0.2.4-1_all.deb ... 833s Unpacking r-cran-pkgkitten (0.2.4-1) ... 833s Selecting previously unselected package r-cran-rcpp. 833s Preparing to unpack .../241-r-cran-rcpp_1.1.0-1_arm64.deb ... 833s Unpacking r-cran-rcpp (1.1.0-1) ... 833s Selecting previously unselected package r-cran-later. 833s Preparing to unpack .../242-r-cran-later_1.4.1+dfsg-1_arm64.deb ... 833s Unpacking r-cran-later (1.4.1+dfsg-1) ... 833s Selecting previously unselected package r-cran-promises. 833s Preparing to unpack .../243-r-cran-promises_1.3.2+dfsg-1_arm64.deb ... 833s Unpacking r-cran-promises (1.3.2+dfsg-1) ... 833s Selecting previously unselected package r-cran-httpuv. 833s Preparing to unpack .../244-r-cran-httpuv_1.6.15+dfsg-1_arm64.deb ... 833s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 833s Selecting previously unselected package r-cran-xtable. 833s Preparing to unpack .../245-r-cran-xtable_1%3a1.8-4-2build1_all.deb ... 833s Unpacking r-cran-xtable (1:1.8-4-2build1) ... 833s Selecting previously unselected package r-cran-sourcetools. 833s Preparing to unpack .../246-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 833s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 833s Selecting previously unselected package r-cran-commonmark. 833s Preparing to unpack .../247-r-cran-commonmark_1.9.5-1_arm64.deb ... 833s Unpacking r-cran-commonmark (1.9.5-1) ... 833s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 833s Preparing to unpack .../248-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 833s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 833s Selecting previously unselected package r-cran-shiny. 833s Preparing to unpack .../249-r-cran-shiny_1.10.0+dfsg-2_all.deb ... 833s Unpacking r-cran-shiny (1.10.0+dfsg-2) ... 834s Selecting previously unselected package r-cran-rmarkdown. 834s Preparing to unpack .../250-r-cran-rmarkdown_2.30+dfsg-1_all.deb ... 834s Unpacking r-cran-rmarkdown (2.30+dfsg-1) ... 834s Selecting previously unselected package r-cran-htmlwidgets. 834s Preparing to unpack .../251-r-cran-htmlwidgets_1.6.4+dfsg-1_all.deb ... 834s Unpacking r-cran-htmlwidgets (1.6.4+dfsg-1) ... 834s Selecting previously unselected package r-cran-rstudioapi. 834s Preparing to unpack .../252-r-cran-rstudioapi_0.18.0-1_all.deb ... 834s Unpacking r-cran-rstudioapi (0.18.0-1) ... 834s Selecting previously unselected package r-cran-htmltable. 834s Preparing to unpack .../253-r-cran-htmltable_2.4.3-1_all.deb ... 834s Unpacking r-cran-htmltable (2.4.3-1) ... 834s Selecting previously unselected package r-cran-colorspace. 834s Preparing to unpack .../254-r-cran-colorspace_2.1-1+dfsg-1_arm64.deb ... 834s Unpacking r-cran-colorspace (2.1-1+dfsg-1) ... 834s Selecting previously unselected package r-cran-formula. 834s Preparing to unpack .../255-r-cran-formula_1.2-5-1_all.deb ... 834s Unpacking r-cran-formula (1.2-5-1) ... 834s Selecting previously unselected package r-cran-chron. 834s Preparing to unpack .../256-r-cran-chron_2.3-62-1_arm64.deb ... 834s Unpacking r-cran-chron (2.3-62-1) ... 834s Selecting previously unselected package r-cran-jpeg. 834s Preparing to unpack .../257-r-cran-jpeg_0.1-10-1_arm64.deb ... 834s Unpacking r-cran-jpeg (0.1-10-1) ... 834s Selecting previously unselected package r-cran-deldir. 834s Preparing to unpack .../258-r-cran-deldir_2.0-4-1build1_arm64.deb ... 834s Unpacking r-cran-deldir (2.0-4-1build1) ... 834s Selecting previously unselected package r-cran-rcppeigen. 834s Preparing to unpack .../259-r-cran-rcppeigen_0.3.4.0.2-1_arm64.deb ... 834s Unpacking r-cran-rcppeigen (0.3.4.0.2-1) ... 834s Selecting previously unselected package r-cran-interp. 834s Preparing to unpack .../260-r-cran-interp_1.1-6-1_arm64.deb ... 834s Unpacking r-cran-interp (1.1-6-1) ... 834s Selecting previously unselected package r-cran-mass. 834s Preparing to unpack .../261-r-cran-mass_7.3-65-1_arm64.deb ... 834s Unpacking r-cran-mass (7.3-65-1) ... 834s Selecting previously unselected package r-cran-latticeextra. 834s Preparing to unpack .../262-r-cran-latticeextra_0.6-31-1_all.deb ... 834s Unpacking r-cran-latticeextra (0.6-31-1) ... 834s Selecting previously unselected package r-cran-acepack. 834s Preparing to unpack .../263-r-cran-acepack_1.6.3-1_arm64.deb ... 834s Unpacking r-cran-acepack (1.6.3-1) ... 834s Selecting previously unselected package r-cran-viridis. 834s Preparing to unpack .../264-r-cran-viridis_0.6.5-1_all.deb ... 834s Unpacking r-cran-viridis (0.6.5-1) ... 835s Selecting previously unselected package r-cran-hmisc. 835s Preparing to unpack .../265-r-cran-hmisc_5.2-5-2_arm64.deb ... 835s Unpacking r-cran-hmisc (5.2-5-2) ... 835s Selecting previously unselected package r-cran-dichromat. 835s Preparing to unpack .../266-r-cran-dichromat_1%3a2.0-0.1-1_all.deb ... 835s Unpacking r-cran-dichromat (1:2.0-0.1-1) ... 835s Selecting previously unselected package r-cran-matrixstats. 835s Preparing to unpack .../267-r-cran-matrixstats_1.5.0-1_arm64.deb ... 835s Unpacking r-cran-matrixstats (1.5.0-1) ... 835s Selecting previously unselected package r-bioc-matrixgenerics. 835s Preparing to unpack .../268-r-bioc-matrixgenerics_1.18.1-1_all.deb ... 835s Unpacking r-bioc-matrixgenerics (1.18.1-1) ... 835s Selecting previously unselected package r-cran-abind. 835s Preparing to unpack .../269-r-cran-abind_1.4-8-1build1_all.deb ... 835s Unpacking r-cran-abind (1.4-8-1build1) ... 835s Selecting previously unselected package r-bioc-s4arrays. 835s Preparing to unpack .../270-r-bioc-s4arrays_1.6.0+dfsg-2_arm64.deb ... 835s Unpacking r-bioc-s4arrays (1.6.0+dfsg-2) ... 835s Selecting previously unselected package r-bioc-sparsearray. 835s Preparing to unpack .../271-r-bioc-sparsearray_1.6.2+dfsg-2_arm64.deb ... 835s Unpacking r-bioc-sparsearray (1.6.2+dfsg-2) ... 835s Selecting previously unselected package r-bioc-delayedarray. 835s Preparing to unpack .../272-r-bioc-delayedarray_0.32.0+dfsg-2_arm64.deb ... 835s Unpacking r-bioc-delayedarray (0.32.0+dfsg-2) ... 835s Selecting previously unselected package r-bioc-summarizedexperiment. 835s Preparing to unpack .../273-r-bioc-summarizedexperiment_1.36.0+dfsg-2_all.deb ... 835s Unpacking r-bioc-summarizedexperiment (1.36.0+dfsg-2) ... 835s Selecting previously unselected package r-cran-bitops. 835s Preparing to unpack .../274-r-cran-bitops_1.0-9-1_arm64.deb ... 835s Unpacking r-cran-bitops (1.0-9-1) ... 835s Selecting previously unselected package r-bioc-rhtslib. 835s Preparing to unpack .../275-r-bioc-rhtslib_3.2.0+dfsg-2_arm64.deb ... 835s Unpacking r-bioc-rhtslib (3.2.0+dfsg-2) ... 835s Selecting previously unselected package r-bioc-rsamtools. 835s Preparing to unpack .../276-r-bioc-rsamtools_2.22.0+dfsg-2_arm64.deb ... 835s Unpacking r-bioc-rsamtools (2.22.0+dfsg-2) ... 835s Selecting previously unselected package r-bioc-genomicalignments. 835s Preparing to unpack .../277-r-bioc-genomicalignments_1.42.0-2_arm64.deb ... 835s Unpacking r-bioc-genomicalignments (1.42.0-2) ... 835s Selecting previously unselected package r-cran-xml. 835s Preparing to unpack .../278-r-cran-xml_3.99-0.20-1_arm64.deb ... 835s Unpacking r-cran-xml (3.99-0.20-1) ... 835s Selecting previously unselected package r-cran-rcurl. 835s Preparing to unpack .../279-r-cran-rcurl_1.98-1.16+dfsg-1_arm64.deb ... 835s Unpacking r-cran-rcurl (1.98-1.16+dfsg-1) ... 835s Selecting previously unselected package r-cran-rjson. 836s Preparing to unpack .../280-r-cran-rjson_0.2.23-1_arm64.deb ... 836s Unpacking r-cran-rjson (0.2.23-1) ... 836s Selecting previously unselected package r-cran-restfulr. 836s Preparing to unpack .../281-r-cran-restfulr_0.0.15-1_arm64.deb ... 836s Unpacking r-cran-restfulr (0.0.15-1) ... 836s Selecting previously unselected package r-bioc-rtracklayer. 836s Preparing to unpack .../282-r-bioc-rtracklayer_1.66.0-3_arm64.deb ... 836s Unpacking r-bioc-rtracklayer (1.66.0-3) ... 836s Selecting previously unselected package r-bioc-genomicfeatures. 836s Preparing to unpack .../283-r-bioc-genomicfeatures_1.58.0+dfsg-2_all.deb ... 836s Unpacking r-bioc-genomicfeatures (1.58.0+dfsg-2) ... 836s Selecting previously unselected package r-bioc-bsgenome. 836s Preparing to unpack .../284-r-bioc-bsgenome_1.74.0-2_all.deb ... 836s Unpacking r-bioc-bsgenome (1.74.0-2) ... 836s Selecting previously unselected package r-bioc-variantannotation. 836s Preparing to unpack .../285-r-bioc-variantannotation_1.52.0-2_arm64.deb ... 836s Unpacking r-bioc-variantannotation (1.52.0-2) ... 836s Selecting previously unselected package r-bioc-protgenerics. 836s Preparing to unpack .../286-r-bioc-protgenerics_1.38.0-2_all.deb ... 836s Unpacking r-bioc-protgenerics (1.38.0-2) ... 836s Selecting previously unselected package r-bioc-ensembldb. 836s Preparing to unpack .../287-r-bioc-ensembldb_2.30.0+dfsg-3_all.deb ... 836s Unpacking r-bioc-ensembldb (2.30.0+dfsg-3) ... 836s Selecting previously unselected package r-bioc-biovizbase. 836s Preparing to unpack .../288-r-bioc-biovizbase_1.54.0-2_arm64.deb ... 836s Unpacking r-bioc-biovizbase (1.54.0-2) ... 836s Selecting previously unselected package r-cran-plyr. 836s Preparing to unpack .../289-r-cran-plyr_1.8.9-1_arm64.deb ... 836s Unpacking r-cran-plyr (1.8.9-1) ... 836s Selecting previously unselected package r-cran-reshape2. 836s Preparing to unpack .../290-r-cran-reshape2_1.4.4-2build2_arm64.deb ... 836s Unpacking r-cran-reshape2 (1.4.4-2build2) ... 836s Selecting previously unselected package r-cran-fastcluster. 836s Preparing to unpack .../291-r-cran-fastcluster_1.3.0-1build1_arm64.deb ... 836s Unpacking r-cran-fastcluster (1.3.0-1build1) ... 836s Selecting previously unselected package r-bioc-gviz. 836s Preparing to unpack .../292-r-bioc-gviz_1.50.0+dfsg-2_all.deb ... 836s Unpacking r-bioc-gviz (1.50.0+dfsg-2) ... 836s Selecting previously unselected package r-bioc-cummerbund. 836s Preparing to unpack .../293-r-bioc-cummerbund_2.48.0-2_all.deb ... 836s Unpacking r-bioc-cummerbund (2.48.0-2) ... 836s Setting up libjs-json (0~20221030+~1.0.8-1build1) ... 836s Setting up javascript-common (12+nmu1build1) ... 836s Setting up libgraphite2-3:arm64 (1.3.14-11ubuntu1) ... 836s Setting up libpixman-1-0:arm64 (0.46.4-1) ... 836s Setting up libsharpyuv0:arm64 (1.5.0-0.1build1) ... 836s Setting up fonts-mathjax (2.7.9+dfsg-1build1) ... 836s Setting up liblerc4:arm64 (4.0.0+ds-5ubuntu2) ... 836s Setting up libzstd-dev:arm64 (1.5.7+dfsg-3) ... 836s Setting up libjs-mathjax (2.7.9+dfsg-1build1) ... 836s Setting up libxrender1:arm64 (1:0.9.12-1) ... 836s Setting up libdatrie1:arm64 (0.2.14-1) ... 836s Setting up libjs-popper.js (1.16.1+ds-6build1) ... 836s Setting up libxcb-render0:arm64 (1.17.0-2ubuntu1) ... 836s Setting up libjs-sifter.js (0.6.0+dfsg-3) ... 836s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-6) ... 836s Setting up unzip (6.0-29ubuntu1) ... 836s Setting up x11-common (1:7.7+24ubuntu1) ... 837s Setting up node-html5shiv (3.7.3+dfsg-5) ... 837s Setting up libdeflate0:arm64 (1.23-2build1) ... 837s Setting up linux-libc-dev:arm64 (6.19.0-3.3) ... 837s Setting up libjs-microplugin.js (0.0.3+dfsg-2) ... 837s Setting up libxcb-shm0:arm64 (1.17.0-2ubuntu1) ... 837s Setting up libgomp1:arm64 (15.2.0-12ubuntu1) ... 837s Setting up libjs-modernizr (3.13.0-0.1build1) ... 837s Setting up libjbig0:arm64 (2.1-6.1ubuntu3) ... 837s Setting up libpcre2-16-0:arm64 (10.46-1) ... 837s Setting up libjs-es5-shim (4.6.7-2) ... 837s Setting up zip (3.0-15ubuntu3) ... 837s Setting up libpcre2-32-0:arm64 (10.46-1) ... 837s Setting up libblas3:arm64 (3.12.1-7ubuntu1) ... 837s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 837s Setting up libtirpc-dev:arm64 (1.3.6+ds-1) ... 837s Setting up libpkgconf3:arm64 (1.8.1-4build1) ... 837s Setting up rpcsvc-proto (1.4.3-1build1) ... 837s Setting up libjs-d3 (3.5.17-4build1) ... 837s Setting up fonts-dejavu-mono (2.37-8build1) ... 837s Setting up libmpc3:arm64 (1.3.1-2) ... 837s Setting up libtcl8.6:arm64 (8.6.17+dfsg-1build1) ... 837s Setting up icu-devtools (78.2-1ubuntu1) ... 837s Setting up fonts-dejavu-core (2.37-8build1) ... 837s Setting up pkgconf-bin (1.8.1-4build1) ... 837s Setting up libjpeg-turbo8:arm64 (2.1.5-4ubuntu3) ... 837s Setting up libgfortran5:arm64 (15.2.0-12ubuntu1) ... 837s Setting up libwebp7:arm64 (1.5.0-0.1build1) ... 837s Setting up liblzma-dev:arm64 (5.8.2-2) ... 837s Setting up libubsan1:arm64 (15.2.0-12ubuntu1) ... 837s Setting up libpcre2-posix3:arm64 (10.46-1) ... 837s Setting up libjs-highlight.js (10.7.3+dfsg-2) ... 837s Setting up libhwasan0:arm64 (15.2.0-12ubuntu1) ... 837s Setting up libcrypt-dev:arm64 (1:4.5.1-1) ... 837s Setting up libasan8:arm64 (15.2.0-12ubuntu1) ... 837s Setting up liblua5.4-0:arm64 (5.4.8-1) ... 837s Setting up libharfbuzz0b:arm64 (12.3.2-1) ... 837s Setting up libthai-data (0.1.30-1) ... 837s Setting up node-bootstrap-sass (3.4.3-2) ... 837s Setting up libjs-prettify (2015.12.04+dfsg-3) ... 837s Setting up libxss1:arm64 (1:1.2.3-1build4) ... 837s Setting up libjs-bootstrap4 (4.6.2+dfsg-1) ... 837s Setting up libpaper2:arm64 (2.2.5-0.3build1) ... 837s Setting up pandoc-data (3.1.11.1-3build1) ... 837s Setting up libtsan2:arm64 (15.2.0-12ubuntu1) ... 837s Setting up libjs-jquery (3.7.1+dfsg+~3.5.33-1build1) ... 837s Setting up libisl23:arm64 (0.27-1build1) ... 837s Setting up libc-dev-bin (2.42-2ubuntu4) ... 837s Setting up libdeflate-dev:arm64 (1.23-2build1) ... 837s Setting up node-normalize.css (8.0.1-5.1) ... 837s Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1build1) ... 837s Setting up xdg-utils (1.2.1-2ubuntu2) ... 837s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 837s Setting up libcc1-0:arm64 (15.2.0-12ubuntu1) ... 837s Setting up liblsan0:arm64 (15.2.0-12ubuntu1) ... 837s Setting up libblas-dev:arm64 (3.12.1-7ubuntu1) ... 837s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode 837s Setting up dctrl-tools (2.24-3build4) ... 837s Setting up libjs-bootstrap (3.4.1+dfsg-6) ... 837s Setting up libitm1:arm64 (15.2.0-12ubuntu1) ... 837s Setting up libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 837s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 837s Setting up cpp-15-aarch64-linux-gnu (15.2.0-12ubuntu1) ... 837s Setting up libice6:arm64 (2:1.1.1-1build1) ... 837s Setting up liblapack3:arm64 (3.12.1-7ubuntu1) ... 837s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 837s Setting up libgcc-15-dev:arm64 (15.2.0-12ubuntu1) ... 837s Setting up fontconfig-config (2.17.1-3ubuntu1) ... 837s Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 837s Setting up libpaper-utils (2.2.5-0.3build1) ... 837s Setting up libgfortran-15-dev:arm64 (15.2.0-12ubuntu1) ... 837s Setting up libjs-jquery-datatables (1.11.5+dfsg-2build1) ... 837s Setting up pkgconf:arm64 (1.8.1-4build1) ... 837s Setting up libthai0:arm64 (0.1.30-1) ... 837s Setting up cpp-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 837s Setting up libjs-jquery-ui (1.13.2+dfsg-1build1) ... 837s Setting up pandoc (3.1.11.1+ds-4) ... 837s Setting up liblapack-dev:arm64 (3.12.1-7ubuntu1) ... 837s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode 837s Setting up cpp-15 (15.2.0-12ubuntu1) ... 837s Setting up libtiff6:arm64 (4.7.0-3ubuntu3) ... 837s Setting up cpp (4:15.2.0-4ubuntu1) ... 837s Setting up libc6-dev:arm64 (2.42-2ubuntu4) ... 837s Setting up libfontconfig1:arm64 (2.17.1-3ubuntu1) ... 837s Setting up libsm6:arm64 (2:1.2.6-1build1) ... 837s Setting up libicu-dev:arm64 (78.2-1ubuntu1) ... 837s Setting up libbz2-dev:arm64 (1.0.8-6build2) ... 837s Setting up fontconfig (2.17.1-3ubuntu1) ... 839s Regenerating fonts cache... done. 839s Setting up libjpeg-turbo8-dev:arm64 (2.1.5-4ubuntu3) ... 839s Setting up libxft2:arm64 (2.3.6-1build2) ... 839s Setting up libncurses-dev:arm64 (6.6+20251231-1) ... 839s Setting up gcc-15-aarch64-linux-gnu (15.2.0-12ubuntu1) ... 839s Setting up libpcre2-dev:arm64 (10.46-1) ... 839s Setting up libtk8.6:arm64 (8.6.17-1) ... 839s Setting up libpango-1.0-0:arm64 (1.57.0-1) ... 839s Setting up libreadline-dev:arm64 (8.3-3) ... 839s Setting up libcairo2:arm64 (1.18.4-3) ... 839s Setting up gcc-15 (15.2.0-12ubuntu1) ... 839s Setting up libstdc++-15-dev:arm64 (15.2.0-12ubuntu1) ... 839s Setting up gfortran-15-aarch64-linux-gnu (15.2.0-12ubuntu1) ... 839s Setting up g++-15-aarch64-linux-gnu (15.2.0-12ubuntu1) ... 839s Setting up libxt6t64:arm64 (1:1.2.1-1.3) ... 839s Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu2) ... 839s Setting up libboost1.90-dev:arm64 (1.90.0-2ubuntu1) ... 839s Setting up libboost-dev:arm64 (1.90.0.0ubuntu3) ... 839s Setting up libpangoft2-1.0-0:arm64 (1.57.0-1) ... 839s Setting up libjpeg8-dev:arm64 (8c-2ubuntu11) ... 839s Setting up g++-15 (15.2.0-12ubuntu1) ... 839s Setting up gfortran-15 (15.2.0-12ubuntu1) ... 839s Setting up libpangocairo-1.0-0:arm64 (1.57.0-1) ... 839s Setting up gcc-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 839s Setting up libpng-dev:arm64 (1.6.54-1) ... 839s Setting up libjpeg-dev:arm64 (8c-2ubuntu11) ... 839s Setting up gcc (4:15.2.0-4ubuntu1) ... 839s Setting up r-base-core (4.5.2-1ubuntu2) ... 840s Creating config file /etc/R/Renviron with new version 840s Setting up r-cran-crayon (1.5.3-1) ... 840s Setting up r-cran-labeling (0.4.3-1) ... 840s Setting up r-cran-sourcetools (0.1.7-1-1) ... 840s Setting up r-cran-futile.options (1.0.1-3build2) ... 840s Setting up r-cran-lattice (0.22-7-1) ... 840s Setting up r-cran-farver (2.1.2-1) ... 840s Setting up r-cran-formatr (1.14-2) ... 840s Setting up r-cran-formula (1.2-5-1) ... 840s Setting up r-cran-xml (3.99-0.20-1) ... 840s Setting up r-cran-viridislite (0.4.3-1) ... 840s Setting up r-cran-cluster (2.1.8.2-1) ... 840s Setting up g++-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 840s Setting up r-cran-nnet (7.3-20-1) ... 840s Setting up gfortran-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 840s Setting up r-cran-lazyeval (0.2.2-1build2) ... 840s Setting up r-cran-commonmark (1.9.5-1) ... 840s Setting up r-cran-rjson (0.2.23-1) ... 840s Setting up r-cran-r6 (2.6.1-1) ... 840s Setting up r-cran-pkgkitten (0.2.4-1) ... 840s Setting up r-cran-jpeg (0.1-10-1) ... 840s Setting up r-cran-chron (2.3-62-1) ... 840s Setting up r-cran-fastcluster (1.3.0-1build1) ... 840s Setting up r-cran-magrittr (2.0.3-1) ... 840s Setting up r-cran-rappdirs (0.3.3-1build1) ... 840s Setting up r-cran-filelock (1.0.3-1) ... 840s Setting up r-bioc-genomeinfodbdata (1.2.13-2) ... 840s Setting up r-cran-littler (0.3.22-1) ... 840s Setting up r-cran-bh (1.84.0-1) ... 840s Setting up r-cran-fs (1.6.5+dfsg-1) ... 840s Setting up r-cran-rcpp (1.1.0-1) ... 840s Setting up r-cran-curl (7.0.0+dfsg-1) ... 840s Setting up r-cran-codetools (0.2-20-1build1) ... 840s Setting up r-bioc-biocgenerics (0.52.0-2) ... 840s Setting up r-cran-rlang (1.1.5-3) ... 840s Setting up r-cran-matrixstats (1.5.0-1) ... 840s Setting up r-bioc-matrixgenerics (1.18.1-1) ... 840s Setting up r-cran-xfun (0.55+dfsg-1) ... 840s Setting up r-cran-sys (3.4.3-1) ... 840s Setting up r-cran-plogr (0.2.0-3build2) ... 840s Setting up r-cran-withr (3.0.2+dfsg-1) ... 840s Setting up r-cran-backports (1.5.0-2) ... 840s Setting up r-cran-mime (0.12-2) ... 840s Setting up r-cran-generics (0.1.4-1) ... 840s Setting up r-cran-base64enc (0.1-3-3build1) ... 840s Setting up r-cran-abind (1.4-8-1build1) ... 840s Setting up r-cran-digest (0.6.39-1) ... 840s Setting up r-cran-yaml (2.3.10-1) ... 840s Setting up r-cran-lambda.r (1.2.4-2build2) ... 840s Setting up r-bioc-protgenerics (1.38.0-2) ... 840s Setting up r-cran-evaluate (1.0.5-1) ... 840s Setting up r-cran-dbi (1.2.3-1build1) ... 840s Setting up r-cran-highr (0.11+dfsg-1) ... 840s Setting up r-cran-prettyunits (1.2.0-1) ... 840s Setting up r-cran-fansi (1.0.6-2) ... 840s Setting up r-cran-mass (7.3-65-1) ... 840s Setting up r-cran-checkmate (2.3.2-1) ... 840s Setting up r-cran-acepack (1.6.3-1) ... 840s Setting up r-cran-snow (1:0.4.4-2build1) ... 840s Setting up r-cran-data.table (1.17.0+dfsg-1) ... 840s Setting up r-cran-glue (1.8.0-1) ... 840s Setting up r-cran-foreign (0.8.91-1) ... 840s Setting up r-cran-bit (4.6.0+dfsg-1) ... 840s Setting up r-cran-xtable (1:1.8-4-2build1) ... 840s Setting up r-cran-cli (3.6.4-1) ... 840s Setting up gfortran (4:15.2.0-4ubuntu1) ... 840s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 840s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 840s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 840s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 840s Setting up r-cran-lifecycle (1.0.5+dfsg-1) ... 840s Setting up r-cran-bitops (1.0-9-1) ... 840s Setting up r-cran-bit64 (4.6.0-1-4) ... 840s Setting up r-cran-dichromat (1:2.0-0.1-1) ... 840s Setting up r-bioc-zlibbioc (1.52.0+dfsg-2) ... 840s Setting up r-cran-deldir (2.0-4-1build1) ... 840s Setting up r-cran-askpass (1.2.1-1) ... 840s Setting up r-cran-fastmap (1.2.0-1) ... 840s Setting up r-cran-png (0.1-8-1build2) ... 840s Setting up r-bioc-biobase (2.66.0-2) ... 840s Setting up r-cran-jsonlite (1.9.1+dfsg-1) ... 840s Setting up r-cran-rstudioapi (0.18.0-1) ... 840s Setting up r-cran-pkgconfig (2.0.3-2build2) ... 840s Setting up r-cran-utf8 (1.2.4-1) ... 840s Setting up r-cran-colorspace (2.1-1+dfsg-1) ... 840s Setting up r-cran-stringi (1.8.4-1build2) ... 840s Setting up r-cran-s7 (0.2.0-1) ... 840s Setting up r-cran-cpp11 (0.5.3-1) ... 840s Setting up r-cran-plyr (1.8.9-1) ... 840s Setting up r-cran-rcolorbrewer (1.1-3-1build2) ... 840s Setting up r-bioc-s4vectors (0.44.0+dfsg-2) ... 840s Setting up r-cran-isoband (0.2.7-1) ... 840s Setting up r-cran-futile.logger (1.4.3-4build2) ... 840s Setting up r-cran-scales (1.4.0-1) ... 840s Setting up r-cran-gtable (0.3.6+dfsg-1) ... 840s Setting up r-cran-later (1.4.1+dfsg-1) ... 840s Setting up r-cran-matrix (1.7-4-1) ... 840s Setting up r-cran-htmltools (0.5.8.1-1) ... 840s Setting up r-cran-tinytex (0.58-1) ... 840s Setting up r-cran-knitr (1.51+dfsg-1) ... 840s Setting up g++ (4:15.2.0-4ubuntu1) ... 840s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 840s Setting up r-cran-cachem (1.1.0-1) ... 840s Setting up r-cran-sass (0.4.9+dfsg-1) ... 840s Setting up build-essential (12.12ubuntu2) ... 840s Setting up r-bioc-iranges (2.40.1-3) ... 840s Setting up r-cran-rcurl (1.98-1.16+dfsg-1) ... 840s Setting up r-cran-restfulr (0.0.15-1) ... 840s Setting up r-cran-vctrs (0.6.5-1) ... 840s Setting up r-cran-rcppeigen (0.3.4.0.2-1) ... 840s Setting up r-cran-pillar (1.11.1+dfsg-1) ... 840s Setting up r-cran-openssl (2.3.2+dfsg-1) ... 840s Setting up r-base-dev (4.5.2-1ubuntu2) ... 840s Setting up r-bioc-s4arrays (1.6.0+dfsg-2) ... 840s Setting up r-cran-stringr (1.5.1-1) ... 840s Setting up r-bioc-biocparallel (1.40.0-2) ... 840s Setting up r-cran-ggplot2 (4.0.2+dfsg-1) ... 840s Setting up r-bioc-rhtslib (3.2.0+dfsg-2) ... 840s Setting up r-cran-xml2 (1.4.1-1) ... 840s Setting up r-cran-tibble (3.2.1+dfsg-3) ... 840s Setting up r-cran-fontawesome (0.5.3-1) ... 840s Setting up r-cran-survival (3.8-6-1) ... 840s Setting up r-bioc-biocio (1.16.0+dfsg-2) ... 840s Setting up r-cran-jquerylib (0.1.4+dfsg-5) ... 840s Setting up r-cran-tidyselect (1.2.1+dfsg-1) ... 840s Setting up r-cran-reshape2 (1.4.4-2build2) ... 840s Setting up r-cran-interp (1.1-6-1) ... 840s Setting up r-cran-httr2 (1.1.1-2) ... 840s Setting up r-cran-httr (1.4.7+dfsg-1) ... 840s Setting up r-cran-gridextra (2.3-3build2) ... 840s Setting up r-cran-hms (1.1.4-1) ... 840s Setting up r-cran-memoise (2.0.1-1build1) ... 840s Setting up r-cran-promises (1.3.2+dfsg-1) ... 840s Setting up r-cran-purrr (1.0.4-1) ... 840s Setting up r-cran-blob (1.3.0-1) ... 840s Setting up pkg-r-autopkgtest (20250812) ... 840s Setting up r-bioc-xvector (0.46.0-2) ... 840s Setting up r-cran-dplyr (1.1.4-4) ... 840s Setting up r-cran-rsqlite (2.3.9-1) ... 840s Setting up r-cran-progress (1.2.3-1) ... 840s Setting up r-bioc-ucsc.utils (1.2.0+ds-2) ... 840s Setting up r-bioc-sparsearray (1.6.2+dfsg-2) ... 840s Setting up r-cran-httpuv (1.6.15+dfsg-1) ... 840s Setting up r-cran-rpart (4.1.24-1build1) ... 840s Setting up r-cran-latticeextra (0.6-31-1) ... 840s Setting up r-cran-viridis (0.6.5-1) ... 840s Setting up r-bioc-genomeinfodb (1.42.3+dfsg-1) ... 840s Setting up r-cran-bslib (0.9.0+dfsg-3build1) ... 840s Setting up r-cran-tidyr (1.3.1-1) ... 840s Setting up r-cran-dbplyr (2.5.1+dfsg-1) ... 840s Setting up r-bioc-delayedarray (0.32.0+dfsg-2) ... 840s Setting up r-bioc-biocfilecache (2.14.0+dfsg-2) ... 840s Setting up r-bioc-genomicranges (1.58.0+dfsg-2) ... 840s Setting up r-bioc-biostrings (2.74.1+dfsg-2) ... 840s Setting up r-bioc-annotationfilter (1.30.0+dfsg-2) ... 840s Setting up r-cran-shiny (1.10.0+dfsg-2) ... 840s Setting up r-cran-rmarkdown (2.30+dfsg-1) ... 840s Setting up r-bioc-rsamtools (2.22.0+dfsg-2) ... 840s Setting up r-bioc-summarizedexperiment (1.36.0+dfsg-2) ... 840s Setting up r-bioc-keggrest (1.46.0+dfsg-3) ... 840s Setting up r-bioc-annotationdbi (1.68.0-2) ... 840s Setting up r-cran-htmlwidgets (1.6.4+dfsg-1) ... 840s Setting up r-bioc-biomart (2.62.1+dfsg-1) ... 840s Setting up r-bioc-genomicalignments (1.42.0-2) ... 840s Setting up r-bioc-rtracklayer (1.66.0-3) ... 840s Setting up r-bioc-genomicfeatures (1.58.0+dfsg-2) ... 840s Setting up r-cran-htmltable (2.4.3-1) ... 840s Setting up r-bioc-bsgenome (1.74.0-2) ... 840s Setting up r-bioc-ensembldb (2.30.0+dfsg-3) ... 840s Setting up r-cran-hmisc (5.2-5-2) ... 840s Setting up r-bioc-variantannotation (1.52.0-2) ... 840s Setting up r-bioc-biovizbase (1.54.0-2) ... 840s Setting up r-bioc-gviz (1.50.0+dfsg-2) ... 840s Setting up r-bioc-cummerbund (2.48.0-2) ... 840s Processing triggers for install-info (7.2-5) ... 840s Processing triggers for libc-bin (2.42-2ubuntu4) ... 840s Processing triggers for man-db (2.13.1-1build1) ... 842s autopkgtest [23:29:11]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 842s autopkgtest [23:29:11]: test pkg-r-autopkgtest: [----------------------- 842s Test: Try to load the R library cummeRbund 842s 842s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 842s Copyright (C) 2025 The R Foundation for Statistical Computing 842s Platform: aarch64-unknown-linux-gnu 842s 842s R is free software and comes with ABSOLUTELY NO WARRANTY. 842s You are welcome to redistribute it under certain conditions. 842s Type 'license()' or 'licence()' for distribution details. 842s 842s R is a collaborative project with many contributors. 842s Type 'contributors()' for more information and 842s 'citation()' on how to cite R or R packages in publications. 842s 842s Type 'demo()' for some demos, 'help()' for on-line help, or 842s 'help.start()' for an HTML browser interface to help. 842s Type 'q()' to quit R. 842s 842s > library('cummeRbund') 842s Loading required package: BiocGenerics 842s 842s Attaching package: ‘BiocGenerics’ 842s 842s The following objects are masked from ‘package:stats’: 842s 842s IQR, mad, sd, var, xtabs 842s 842s The following objects are masked from ‘package:base’: 842s 842s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 842s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 842s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 842s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 842s Position, rank, rbind, Reduce, rownames, sapply, saveRDS, setdiff, 842s table, tapply, union, unique, unsplit, which.max, which.min 842s 842s Loading required package: RSQLite 843s Loading required package: ggplot2 843s Loading required package: reshape2 844s Loading required package: fastcluster 844s 844s Attaching package: ‘fastcluster’ 844s 844s The following object is masked from ‘package:stats’: 844s 844s hclust 844s 844s Loading required package: rtracklayer 844s Loading required package: GenomicRanges 844s Loading required package: stats4 844s Loading required package: S4Vectors 844s 844s Attaching package: ‘S4Vectors’ 844s 844s The following object is masked from ‘package:utils’: 844s 844s findMatches 844s 844s The following objects are masked from ‘package:base’: 844s 844s expand.grid, I, unname 844s 844s Loading required package: IRanges 845s Loading required package: GenomeInfoDb 852s Loading required package: Gviz 852s Loading required package: grid 856s 856s Attaching package: 'cummeRbund' 856s 856s The following object is masked from 'package:GenomicRanges': 856s 856s promoters 856s 856s The following object is masked from 'package:IRanges': 856s 856s promoters 856s 856s The following object is masked from 'package:BiocGenerics': 856s 856s conditions 856s 856s > 856s find: ‘tests’: No such file or directory 857s autopkgtest [23:29:26]: test pkg-r-autopkgtest: -----------------------] 857s pkg-r-autopkgtest PASS 857s autopkgtest [23:29:26]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 857s autopkgtest [23:29:26]: @@@@@@@@@@@@@@@@@@@@ summary 857s pkg-r-autopkgtest PASS