0s autopkgtest [12:28:10]: starting date and time: 2025-11-17 12:28:10+0000 0s autopkgtest [12:28:10]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [12:28:10]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work._dui79yp/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:requests,src:python3-defaults --apt-upgrade python-skbio --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=requests/2.32.5+dfsg-1ubuntu1 python3-defaults/3.13.7-2' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-9.secgroup --name adt-resolute-arm64-python-skbio-20251117-122809-juju-7f2275-prod-proposed-migration-environment-2-f00c52e5-4d40-45b1-989b-0ed8f320f794 --image adt/ubuntu-resolute-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 3s Creating nova instance adt-resolute-arm64-python-skbio-20251117-122809-juju-7f2275-prod-proposed-migration-environment-2-f00c52e5-4d40-45b1-989b-0ed8f320f794 from image adt/ubuntu-resolute-arm64-server-20251117.img (UUID 1cd33fbb-18df-4c5a-b8f0-2dcb25269485)... 82s autopkgtest [12:29:32]: testbed dpkg architecture: arm64 82s autopkgtest [12:29:32]: testbed apt version: 3.1.11 83s autopkgtest [12:29:33]: @@@@@@@@@@@@@@@@@@@@ test bed setup 83s autopkgtest [12:29:33]: testbed release detected to be: None 84s autopkgtest [12:29:34]: updating testbed package index (apt update) 85s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [87.8 kB] 85s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 85s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 85s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 85s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [9848 B] 85s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [868 kB] 86s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [81.1 kB] 86s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [22.9 kB] 86s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 Packages [149 kB] 86s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 c-n-f Metadata [3084 B] 86s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 Packages [107 kB] 86s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 c-n-f Metadata [324 B] 86s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 Packages [577 kB] 86s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 c-n-f Metadata [17.8 kB] 86s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 Packages [12.5 kB] 86s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 c-n-f Metadata [576 B] 89s Fetched 1938 kB in 2s (977 kB/s) 90s Reading package lists... 92s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 92s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 92s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 92s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 94s Reading package lists... 94s Reading package lists... 94s Building dependency tree... 94s Reading state information... 95s Calculating upgrade... 95s The following packages will be upgraded: 95s libpython3-stdlib python3 python3-minimal python3-requests usbutils 95s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 95s Need to get 197 kB of archives. 95s After this operation, 1024 B of additional disk space will be used. 95s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 python3-minimal arm64 3.13.7-2 [27.8 kB] 95s Get:2 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 python3 arm64 3.13.7-2 [23.9 kB] 95s Get:3 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 libpython3-stdlib arm64 3.13.7-2 [10.6 kB] 95s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 usbutils arm64 1:019-1 [81.7 kB] 96s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 python3-requests all 2.32.5+dfsg-1ubuntu1 [53.1 kB] 96s dpkg-preconfigure: unable to re-open stdin: No such file or directory 96s Fetched 197 kB in 0s (395 kB/s) 97s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 88137 files and directories currently installed.) 97s Preparing to unpack .../python3-minimal_3.13.7-2_arm64.deb ... 97s Unpacking python3-minimal (3.13.7-2) over (3.13.7-1) ... 97s Setting up python3-minimal (3.13.7-2) ... 98s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 88137 files and directories currently installed.) 98s Preparing to unpack .../python3_3.13.7-2_arm64.deb ... 98s running python pre-rtupdate hooks for python3.13... 98s Unpacking python3 (3.13.7-2) over (3.13.7-1) ... 98s Preparing to unpack .../libpython3-stdlib_3.13.7-2_arm64.deb ... 98s Unpacking libpython3-stdlib:arm64 (3.13.7-2) over (3.13.7-1) ... 98s Preparing to unpack .../usbutils_1%3a019-1_arm64.deb ... 98s Unpacking usbutils (1:019-1) over (1:018-2) ... 98s Preparing to unpack .../python3-requests_2.32.5+dfsg-1ubuntu1_all.deb ... 99s Unpacking python3-requests (2.32.5+dfsg-1ubuntu1) over (2.32.3+dfsg-5ubuntu2) ... 99s Setting up usbutils (1:019-1) ... 99s Setting up libpython3-stdlib:arm64 (3.13.7-2) ... 99s Setting up python3 (3.13.7-2) ... 99s running python rtupdate hooks for python3.13... 99s running python post-rtupdate hooks for python3.13... 99s Setting up python3-requests (2.32.5+dfsg-1ubuntu1) ... 99s Processing triggers for man-db (2.13.1-1) ... 102s autopkgtest [12:29:52]: upgrading testbed (apt dist-upgrade and autopurge) 102s Reading package lists... 103s Building dependency tree... 103s Reading state information... 103s Calculating upgrade... 104s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 104s Reading package lists... 104s Building dependency tree... 104s Reading state information... 105s Solving dependencies... 105s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 109s autopkgtest [12:29:59]: testbed running kernel: Linux 6.17.0-5-generic #5-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 22 09:50:31 UTC 2025 109s autopkgtest [12:29:59]: @@@@@@@@@@@@@@@@@@@@ apt-source python-skbio 113s Get:1 http://ftpmaster.internal/ubuntu resolute/universe python-skbio 0.6.2-4build2 (dsc) [2921 B] 113s Get:2 http://ftpmaster.internal/ubuntu resolute/universe python-skbio 0.6.2-4build2 (tar) [2204 kB] 113s Get:3 http://ftpmaster.internal/ubuntu resolute/universe python-skbio 0.6.2-4build2 (diff) [12.0 kB] 113s gpgv: Signature made Tue Mar 4 14:51:35 2025 UTC 113s gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2 113s gpgv: Can't check signature: No public key 113s dpkg-source: warning: cannot verify inline signature for ./python-skbio_0.6.2-4build2.dsc: no acceptable signature found 114s autopkgtest [12:30:04]: testing package python-skbio version 0.6.2-4build2 114s autopkgtest [12:30:04]: build not needed 115s autopkgtest [12:30:05]: test pybuild-autopkgtest: preparing testbed 116s Reading package lists... 116s Building dependency tree... 116s Reading state information... 116s Solving dependencies... 117s The following NEW packages will be installed: 117s architecture-properties autoconf automake autopoint autotools-dev blt 117s build-essential cpp cpp-15 cpp-15-aarch64-linux-gnu cpp-aarch64-linux-gnu 117s cython3 debhelper debugedit dh-autoreconf dh-python dh-strip-nondeterminism 117s docutils-common dwz fontconfig-config fonts-dejavu-core fonts-dejavu-mono 117s fonts-lyx fonts-mathjax fonts-open-sans g++ g++-15 g++-15-aarch64-linux-gnu 117s g++-aarch64-linux-gnu gcc gcc-15 gcc-15-aarch64-linux-gnu 117s gcc-aarch64-linux-gnu gettext intltool-debian libaec0 libarchive-zip-perl 117s libasan8 libblas3 libcc1-0 libdebhelper-perl libdeflate0 libexpat1-dev 117s libfile-stripnondeterminism-perl libfontconfig1 libgcc-15-dev libgfortran5 117s libgomp1 libgraphite2-3 libharfbuzz0b libhdf5-310 libhdf5-hl-310 libhwasan0 117s libimagequant0 libisl23 libitm1 libjbig0 libjpeg-turbo8 libjpeg8 117s libjs-jquery libjs-mathjax libjs-sphinxdoc libjs-underscore libjson-perl 117s liblapack3 liblcms2-2 liblerc4 liblsan0 liblzf1 libmpc3 libopenjp2-7 117s libpython3-all-dev libpython3-dev libpython3.13-dev libpython3.14 117s libpython3.14-dev libpython3.14-minimal libpython3.14-stdlib libqhull-r8.0 117s libraqm0 libsharpyuv0 libsimde-dev libssw-dev libssw0 libstdc++-15-dev 117s libsz2 libtcl8.6 libtiff6 libtk8.6 libtool libtsan2 libubsan1 libwebp7 117s libwebpdemux2 libwebpmux3 libxft2 libxrender1 libxslt1.1 libxss1 libzopfli1 117s m4 node-fortawesome-fontawesome-free po-debconf pybuild-plugin-autopkgtest 117s python-biom-format-doc python-matplotlib-data python-numpy-doc 117s python-pandas-doc python-scipy-doc python-skbio-doc 117s python3-accessible-pygments python3-alabaster python3-all python3-all-dev 117s python3-asttokens python3-biom-format python3-brotli python3-bs4 117s python3-cachecontrol python3-click python3-contourpy python3-cycler 117s python3-decorator python3-defusedxml python3-dev python3-doc 117s python3-docutils python3-executing python3-fonttools python3-fs python3-h5py 117s python3-h5py-serial python3-hdmedians python3-imagesize python3-iniconfig 117s python3-ipython python3-jedi python3-joblib python3-kiwisolver python3-lxml 117s python3-lz4 python3-matplotlib python3-matplotlib-inline python3-mpmath 117s python3-msgpack python3-natsort python3-numpy python3-numpy-dev 117s python3-numpydoc python3-pandas python3-pandas-lib python3-parso 117s python3-patsy python3-pil python3-pil.imagetk python3-platformdirs 117s python3-pluggy python3-prompt-toolkit python3-pure-eval 117s python3-pydata-sphinx-theme python3-pytest python3-pytz python3-roman 117s python3-scipy python3-skbio python3-sklearn python3-sklearn-lib 117s python3-snowballstemmer python3-soupsieve python3-sphinx 117s python3-sphinx-copybutton python3-sphinx-design python3-stack-data 117s python3-statsmodels python3-statsmodels-lib python3-sympy 117s python3-threadpoolctl python3-tk python3-traitlets python3-typeshed 117s python3-ufolib2 python3-wcwidth python3-zopfli python3.13-dev python3.13-doc 117s python3.13-tk python3.14 python3.14-dev python3.14-minimal python3.14-tk 117s sgml-base sphinx-common tk8.6-blt2.5 unicode-data x11-common xml-core 117s zlib1g-dev 117s 0 upgraded, 197 newly installed, 0 to remove and 0 not upgraded. 117s Need to get 254 MB of archives. 117s After this operation, 1438 MB of additional disk space will be used. 117s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-numpy-dev arm64 1:2.2.4+ds-1ubuntu1 [146 kB] 118s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 libblas3 arm64 3.12.1-7 [181 kB] 118s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 libgfortran5 arm64 15.2.0-7ubuntu1 [450 kB] 118s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 liblapack3 arm64 3.12.1-7 [2300 kB] 119s Get:5 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-numpy arm64 1:2.2.4+ds-1ubuntu1 [3986 kB] 120s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 libpython3.14-minimal arm64 3.14.0-4 [903 kB] 120s Get:7 http://ftpmaster.internal/ubuntu resolute/main arm64 python3.14-minimal arm64 3.14.0-4 [2543 kB] 120s Get:8 http://ftpmaster.internal/ubuntu resolute/universe arm64 architecture-properties arm64 0.2.6 [2208 B] 120s Get:9 http://ftpmaster.internal/ubuntu resolute/main arm64 m4 arm64 1.4.20-2 [213 kB] 120s Get:10 http://ftpmaster.internal/ubuntu resolute/main arm64 autoconf all 2.72-3.1ubuntu1 [384 kB] 120s Get:11 http://ftpmaster.internal/ubuntu resolute/main arm64 autotools-dev all 20240727.1 [43.4 kB] 120s Get:12 http://ftpmaster.internal/ubuntu resolute/main arm64 automake all 1:1.18.1-2 [581 kB] 120s Get:13 http://ftpmaster.internal/ubuntu resolute/main arm64 autopoint all 0.23.2-1 [620 kB] 120s Get:14 http://ftpmaster.internal/ubuntu resolute/main arm64 libtcl8.6 arm64 8.6.17+dfsg-1 [1024 kB] 120s Get:15 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 121s Get:16 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 121s Get:17 http://ftpmaster.internal/ubuntu resolute/main arm64 fontconfig-config arm64 2.15.0-2.3ubuntu1 [38.1 kB] 121s Get:18 http://ftpmaster.internal/ubuntu resolute/main arm64 libfontconfig1 arm64 2.15.0-2.3ubuntu1 [144 kB] 121s Get:19 http://ftpmaster.internal/ubuntu resolute/main arm64 libxrender1 arm64 1:0.9.12-1 [19.5 kB] 121s Get:20 http://ftpmaster.internal/ubuntu resolute/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB] 121s Get:21 http://ftpmaster.internal/ubuntu resolute/main arm64 x11-common all 1:7.7+24ubuntu1 [22.4 kB] 121s Get:22 http://ftpmaster.internal/ubuntu resolute/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B] 121s Get:23 http://ftpmaster.internal/ubuntu resolute/main arm64 libtk8.6 arm64 8.6.17-1 [811 kB] 121s Get:24 http://ftpmaster.internal/ubuntu resolute/main arm64 tk8.6-blt2.5 arm64 2.5.3+dfsg-8 [624 kB] 121s Get:25 http://ftpmaster.internal/ubuntu resolute/main arm64 blt arm64 2.5.3+dfsg-8 [4824 B] 121s Get:26 http://ftpmaster.internal/ubuntu resolute/main arm64 libisl23 arm64 0.27-1 [676 kB] 121s Get:27 http://ftpmaster.internal/ubuntu resolute/main arm64 libmpc3 arm64 1.3.1-2 [55.6 kB] 121s Get:28 http://ftpmaster.internal/ubuntu resolute/main arm64 cpp-15-aarch64-linux-gnu arm64 15.2.0-7ubuntu1 [11.7 MB] 122s Get:29 http://ftpmaster.internal/ubuntu resolute/main arm64 cpp-15 arm64 15.2.0-7ubuntu1 [1026 B] 122s Get:30 http://ftpmaster.internal/ubuntu resolute/main arm64 cpp-aarch64-linux-gnu arm64 4:15.2.0-4ubuntu1 [5736 B] 122s Get:31 http://ftpmaster.internal/ubuntu resolute/main arm64 cpp arm64 4:15.2.0-4ubuntu1 [22.4 kB] 122s Get:32 http://ftpmaster.internal/ubuntu resolute/main arm64 libcc1-0 arm64 15.2.0-7ubuntu1 [49.0 kB] 122s Get:33 http://ftpmaster.internal/ubuntu resolute/main arm64 libgomp1 arm64 15.2.0-7ubuntu1 [147 kB] 122s Get:34 http://ftpmaster.internal/ubuntu resolute/main arm64 libitm1 arm64 15.2.0-7ubuntu1 [27.9 kB] 122s Get:35 http://ftpmaster.internal/ubuntu resolute/main arm64 libasan8 arm64 15.2.0-7ubuntu1 [2923 kB] 122s Get:36 http://ftpmaster.internal/ubuntu resolute/main arm64 liblsan0 arm64 15.2.0-7ubuntu1 [1316 kB] 122s Get:37 http://ftpmaster.internal/ubuntu resolute/main arm64 libtsan2 arm64 15.2.0-7ubuntu1 [2689 kB] 122s Get:38 http://ftpmaster.internal/ubuntu resolute/main arm64 libubsan1 arm64 15.2.0-7ubuntu1 [1176 kB] 122s Get:39 http://ftpmaster.internal/ubuntu resolute/main arm64 libhwasan0 arm64 15.2.0-7ubuntu1 [1638 kB] 123s Get:40 http://ftpmaster.internal/ubuntu resolute/main arm64 libgcc-15-dev arm64 15.2.0-7ubuntu1 [2600 kB] 123s Get:41 http://ftpmaster.internal/ubuntu resolute/main arm64 gcc-15-aarch64-linux-gnu arm64 15.2.0-7ubuntu1 [23.1 MB] 126s Get:42 http://ftpmaster.internal/ubuntu resolute/main arm64 gcc-15 arm64 15.2.0-7ubuntu1 [513 kB] 126s Get:43 http://ftpmaster.internal/ubuntu resolute/main arm64 gcc-aarch64-linux-gnu arm64 4:15.2.0-4ubuntu1 [1206 B] 126s Get:44 http://ftpmaster.internal/ubuntu resolute/main arm64 gcc arm64 4:15.2.0-4ubuntu1 [5016 B] 126s Get:45 http://ftpmaster.internal/ubuntu resolute/main arm64 libstdc++-15-dev arm64 15.2.0-7ubuntu1 [2546 kB] 127s Get:46 http://ftpmaster.internal/ubuntu resolute/main arm64 g++-15-aarch64-linux-gnu arm64 15.2.0-7ubuntu1 [13.2 MB] 128s Get:47 http://ftpmaster.internal/ubuntu resolute/main arm64 g++-15 arm64 15.2.0-7ubuntu1 [23.7 kB] 128s Get:48 http://ftpmaster.internal/ubuntu resolute/main arm64 g++-aarch64-linux-gnu arm64 4:15.2.0-4ubuntu1 [956 B] 128s Get:49 http://ftpmaster.internal/ubuntu resolute/main arm64 g++ arm64 4:15.2.0-4ubuntu1 [1080 B] 128s Get:50 http://ftpmaster.internal/ubuntu resolute/main arm64 build-essential arm64 12.12ubuntu1 [5082 B] 128s Get:51 http://ftpmaster.internal/ubuntu resolute/universe arm64 cython3 arm64 3.1.6+dfsg-1ubuntu1 [3180 kB] 129s Get:52 http://ftpmaster.internal/ubuntu resolute/main arm64 libdebhelper-perl all 13.24.2ubuntu1 [95.7 kB] 129s Get:53 http://ftpmaster.internal/ubuntu resolute/main arm64 libtool all 2.5.4-7 [169 kB] 129s Get:54 http://ftpmaster.internal/ubuntu resolute/main arm64 dh-autoreconf all 21 [12.5 kB] 129s Get:55 http://ftpmaster.internal/ubuntu resolute/main arm64 libarchive-zip-perl all 1.68-1 [90.2 kB] 129s Get:56 http://ftpmaster.internal/ubuntu resolute/main arm64 libfile-stripnondeterminism-perl all 1.15.0-1 [20.5 kB] 129s Get:57 http://ftpmaster.internal/ubuntu resolute/main arm64 dh-strip-nondeterminism all 1.15.0-1 [5090 B] 129s Get:58 http://ftpmaster.internal/ubuntu resolute/main arm64 debugedit arm64 1:5.2-3 [49.1 kB] 129s Get:59 http://ftpmaster.internal/ubuntu resolute/main arm64 dwz arm64 0.16-2 [113 kB] 129s Get:60 http://ftpmaster.internal/ubuntu resolute/main arm64 gettext arm64 0.23.2-1 [998 kB] 129s Get:61 http://ftpmaster.internal/ubuntu resolute/main arm64 intltool-debian all 0.35.0+20060710.6 [23.2 kB] 129s Get:62 http://ftpmaster.internal/ubuntu resolute/main arm64 po-debconf all 1.0.21+nmu1 [233 kB] 129s Get:63 http://ftpmaster.internal/ubuntu resolute/main arm64 debhelper all 13.24.2ubuntu1 [896 kB] 129s Get:64 http://ftpmaster.internal/ubuntu resolute/universe arm64 dh-python all 6.20250414 [119 kB] 129s Get:65 http://ftpmaster.internal/ubuntu resolute/main arm64 sgml-base all 1.31+nmu1 [11.0 kB] 129s Get:66 http://ftpmaster.internal/ubuntu resolute/main arm64 xml-core all 0.19 [20.3 kB] 129s Get:67 http://ftpmaster.internal/ubuntu resolute/main arm64 docutils-common all 0.21.2+dfsg-2 [131 kB] 129s Get:68 http://ftpmaster.internal/ubuntu resolute/universe arm64 fonts-lyx all 2.4.4-2 [171 kB] 129s Get:69 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 129s Get:70 http://ftpmaster.internal/ubuntu resolute/universe arm64 fonts-open-sans all 1.11-2 [635 kB] 129s Get:71 http://ftpmaster.internal/ubuntu resolute/universe arm64 libaec0 arm64 1.1.4-2 [22.2 kB] 129s Get:72 http://ftpmaster.internal/ubuntu resolute/main arm64 libdeflate0 arm64 1.23-2 [46.4 kB] 129s Get:73 http://ftpmaster.internal/ubuntu resolute/main arm64 libexpat1-dev arm64 2.7.3-1 [131 kB] 129s Get:74 http://ftpmaster.internal/ubuntu resolute/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB] 129s Get:75 http://ftpmaster.internal/ubuntu resolute/main arm64 libharfbuzz0b arm64 12.1.0-1 [523 kB] 129s Get:76 http://ftpmaster.internal/ubuntu resolute/universe arm64 libsz2 arm64 1.1.4-2 [5258 B] 129s Get:77 http://ftpmaster.internal/ubuntu resolute/universe arm64 libhdf5-310 arm64 1.14.5+repack-4 [1286 kB] 130s Get:78 http://ftpmaster.internal/ubuntu resolute/universe arm64 libhdf5-hl-310 arm64 1.14.5+repack-4 [58.9 kB] 130s Get:79 http://ftpmaster.internal/ubuntu resolute/main arm64 libimagequant0 arm64 2.18.0-1build1 [37.1 kB] 130s Get:80 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg-turbo8 arm64 2.1.5-4ubuntu2 [165 kB] 130s Get:81 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 130s Get:82 http://ftpmaster.internal/ubuntu resolute/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 130s Get:83 http://ftpmaster.internal/ubuntu resolute/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 130s Get:84 http://ftpmaster.internal/ubuntu resolute/main arm64 libjs-sphinxdoc all 8.2.3-1ubuntu2 [28.0 kB] 130s Get:85 http://ftpmaster.internal/ubuntu resolute/main arm64 libjson-perl all 4.10000-1 [81.9 kB] 130s Get:86 http://ftpmaster.internal/ubuntu resolute/main arm64 liblcms2-2 arm64 2.17-1 [170 kB] 130s Get:87 http://ftpmaster.internal/ubuntu resolute/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB] 130s Get:88 http://ftpmaster.internal/ubuntu resolute/universe arm64 liblzf1 arm64 3.6-4 [7426 B] 130s Get:89 http://ftpmaster.internal/ubuntu resolute/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu2 [899 kB] 130s Get:90 http://ftpmaster.internal/ubuntu resolute/main arm64 libpython3.13-dev arm64 3.13.9-1 [5822 kB] 131s Get:91 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 libpython3-dev arm64 3.13.7-2 [10.9 kB] 131s Get:92 http://ftpmaster.internal/ubuntu resolute/main arm64 libpython3.14-stdlib arm64 3.14.0-4 [2349 kB] 131s Get:93 http://ftpmaster.internal/ubuntu resolute/main arm64 libpython3.14 arm64 3.14.0-4 [2592 kB] 131s Get:94 http://ftpmaster.internal/ubuntu resolute/main arm64 libpython3.14-dev arm64 3.14.0-4 [5974 kB] 132s Get:95 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 libpython3-all-dev arm64 3.13.7-2 [918 B] 132s Get:96 http://ftpmaster.internal/ubuntu resolute/universe arm64 libqhull-r8.0 arm64 2020.2-7 [190 kB] 132s Get:97 http://ftpmaster.internal/ubuntu resolute/main arm64 libraqm0 arm64 0.10.3-1 [15.0 kB] 132s Get:98 http://ftpmaster.internal/ubuntu resolute/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB] 132s Get:99 http://ftpmaster.internal/ubuntu resolute/universe arm64 libsimde-dev all 0.8.2-3 [469 kB] 132s Get:100 http://ftpmaster.internal/ubuntu resolute/universe arm64 libssw0 arm64 1.1-15 [21.8 kB] 132s Get:101 http://ftpmaster.internal/ubuntu resolute/universe arm64 libssw-dev arm64 1.1-15 [23.6 kB] 132s Get:102 http://ftpmaster.internal/ubuntu resolute/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB] 132s Get:103 http://ftpmaster.internal/ubuntu resolute/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB] 132s Get:104 http://ftpmaster.internal/ubuntu resolute/main arm64 libtiff6 arm64 4.7.0-3ubuntu3 [196 kB] 133s Get:105 http://ftpmaster.internal/ubuntu resolute/main arm64 libwebpdemux2 arm64 1.5.0-0.1 [12.5 kB] 133s Get:106 http://ftpmaster.internal/ubuntu resolute/main arm64 libwebpmux3 arm64 1.5.0-0.1 [25.4 kB] 133s Get:107 http://ftpmaster.internal/ubuntu resolute/main arm64 libxslt1.1 arm64 1.1.43-0.3 [172 kB] 133s Get:108 http://ftpmaster.internal/ubuntu resolute/universe arm64 libzopfli1 arm64 1.0.3-3 [108 kB] 133s Get:109 http://ftpmaster.internal/ubuntu resolute/universe arm64 node-fortawesome-fontawesome-free all 6.7.2+ds1-1 [1653 kB] 133s Get:110 http://ftpmaster.internal/ubuntu resolute/universe arm64 pybuild-plugin-autopkgtest all 6.20250414 [1746 B] 133s Get:111 http://ftpmaster.internal/ubuntu resolute/universe arm64 python-biom-format-doc all 2.1.16-1build3 [57.5 kB] 133s Get:112 http://ftpmaster.internal/ubuntu resolute/universe arm64 python-matplotlib-data all 3.10.7+dfsg1-1 [2930 kB] 133s Get:113 http://ftpmaster.internal/ubuntu resolute/main arm64 python-numpy-doc all 1:2.2.4+ds-1ubuntu1 [5769 kB] 134s Get:114 http://ftpmaster.internal/ubuntu resolute/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 135s Get:115 http://ftpmaster.internal/ubuntu resolute/universe arm64 python-pandas-doc all 2.3.3+dfsg-1ubuntu1 [14.1 MB] 136s Get:116 http://ftpmaster.internal/ubuntu resolute/universe arm64 python-skbio-doc all 0.6.2-4build2 [2342 kB] 137s Get:117 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-accessible-pygments all 0.0.5-2 [790 kB] 137s Get:118 http://ftpmaster.internal/ubuntu resolute/main arm64 python3.14 arm64 3.14.0-4 [805 kB] 137s Get:119 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 python3-all arm64 3.13.7-2 [890 B] 137s Get:120 http://ftpmaster.internal/ubuntu resolute/main arm64 python3.13-dev arm64 3.13.9-1 [508 kB] 137s Get:121 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 python3-dev arm64 3.13.7-2 [26.6 kB] 137s Get:122 http://ftpmaster.internal/ubuntu resolute/main arm64 python3.14-dev arm64 3.14.0-4 [510 kB] 137s Get:123 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 python3-all-dev arm64 3.13.7-2 [914 B] 137s Get:124 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-asttokens all 3.0.0-2 [20.5 kB] 137s Get:125 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-h5py-serial arm64 3.13.0-1ubuntu1 [1123 kB] 137s Get:126 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-h5py all 3.13.0-1ubuntu1 [8230 B] 137s Get:127 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-click all 8.2.0+0.really.8.1.8-1 [80.0 kB] 137s Get:128 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-pytz all 2025.2-4 [32.3 kB] 137s Get:129 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pandas-lib arm64 2.3.3+dfsg-1ubuntu1 [6979 kB] 138s Get:130 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pandas all 2.3.3+dfsg-1ubuntu1 [2948 kB] 138s Get:131 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-decorator all 5.2.1-2 [28.1 kB] 138s Get:132 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-scipy arm64 1.15.3-1ubuntu1 [18.7 MB] 140s Get:133 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-biom-format arm64 2.1.16-1build3 [142 kB] 140s Get:134 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-brotli arm64 1.1.0-2build6 [343 kB] 140s Get:135 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-soupsieve all 2.7-2 [33.6 kB] 140s Get:136 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-bs4 all 4.13.4-3 [137 kB] 140s Get:137 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-msgpack arm64 1.0.3-3build5 [103 kB] 140s Get:138 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-cachecontrol all 0.14.3-1 [18.7 kB] 140s Get:139 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-contourpy arm64 1.3.1-2 [240 kB] 140s Get:140 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-cycler all 0.12.1-2 [9850 B] 140s Get:141 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-defusedxml all 0.7.1-3 [42.2 kB] 140s Get:142 http://ftpmaster.internal/ubuntu resolute/main arm64 python3.13-doc all 3.13.9-1 [14.3 MB] 141s Get:143 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 python3-doc all 3.13.7-2 [10.8 kB] 141s Get:144 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-roman all 5.1-1 [10.6 kB] 141s Get:145 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-docutils all 0.21.2+dfsg-2 [409 kB] 141s Get:146 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-executing all 2.2.0-0.2 [25.0 kB] 141s Get:147 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-platformdirs all 4.3.7-1 [16.9 kB] 141s Get:148 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-fs all 2.4.16-9ubuntu1 [91.5 kB] 141s Get:149 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-lxml arm64 6.0.2-1 [2155 kB] 142s Get:150 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-lz4 arm64 4.4.4+dfsg-3 [27.6 kB] 142s Get:151 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-mpmath all 1.3.0-2 [423 kB] 142s Get:152 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-sympy all 1.14.0-2 [4306 kB] 142s Get:153 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-ufolib2 all 0.17.1+dfsg1-1 [33.5 kB] 142s Get:154 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-zopfli arm64 0.4.0-1 [10.8 kB] 142s Get:155 http://ftpmaster.internal/ubuntu resolute/universe arm64 unicode-data all 16.0.0-1 [9513 kB] 143s Get:156 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-fonttools arm64 4.57.0-2build1 [1648 kB] 143s Get:157 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-hdmedians arm64 0.14.2-6build2 [171 kB] 143s Get:158 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-imagesize all 1.4.1-1 [6844 B] 143s Get:159 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-iniconfig all 2.1.0-1 [6840 B] 143s Get:160 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-parso all 0.8.5-1 [68.0 kB] 143s Get:161 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-typeshed all 0.0~git20241223.ea91db2-4 [1554 kB] 144s Get:162 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-jedi all 0.19.1+ds1-1 [693 kB] 144s Get:163 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-traitlets all 5.14.3+really5.14.3-1 [71.5 kB] 144s Get:164 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-matplotlib-inline all 0.1.7-1 [9186 B] 144s Get:165 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-wcwidth all 0.2.13+dfsg1-1 [26.3 kB] 144s Get:166 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-prompt-toolkit all 3.0.52-1 [258 kB] 144s Get:167 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pure-eval all 0.2.3-1 [11.4 kB] 144s Get:168 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-stack-data all 0.6.3-1 [22.0 kB] 144s Get:169 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-ipython all 8.35.0-2 [575 kB] 144s Get:170 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-joblib all 1.4.2-4 [205 kB] 144s Get:171 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-kiwisolver arm64 1.4.10~rc0-1 [60.1 kB] 144s Get:172 http://ftpmaster.internal/ubuntu resolute/main arm64 libopenjp2-7 arm64 2.5.3-2.1 [179 kB] 144s Get:173 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-pil arm64 11.3.0-1ubuntu2 [492 kB] 144s Get:174 http://ftpmaster.internal/ubuntu resolute/main arm64 python3.14-tk arm64 3.14.0-4 [107 kB] 144s Get:175 http://ftpmaster.internal/ubuntu resolute/main arm64 python3.13-tk arm64 3.13.9-1 [106 kB] 144s Get:176 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-tk arm64 3.13.9-1 [8946 B] 144s Get:177 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pil.imagetk arm64 11.3.0-1ubuntu2 [9582 B] 144s Get:178 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-matplotlib arm64 3.10.7+dfsg1-1 [17.1 MB] 148s Get:179 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-natsort all 8.4.0-1 [34.1 kB] 148s Get:180 http://ftpmaster.internal/ubuntu resolute/main arm64 sphinx-common all 8.2.3-1ubuntu2 [656 kB] 148s Get:181 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-alabaster all 0.7.16-0.1 [18.5 kB] 148s Get:182 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-snowballstemmer all 3.0.1-1 [65.9 kB] 148s Get:183 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-sphinx all 8.2.3-1ubuntu2 [482 kB] 148s Get:184 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-numpydoc all 1.9.0-1 [53.2 kB] 148s Get:185 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-patsy all 1.0.2-1 [179 kB] 148s Get:186 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pluggy all 1.6.0-1 [21.0 kB] 148s Get:187 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pydata-sphinx-theme all 0.16.1+dfsg-3 [959 kB] 149s Get:188 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pytest all 8.3.5-2 [252 kB] 149s Get:189 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-statsmodels-lib arm64 0.14.5+dfsg-1ubuntu1 [2423 kB] 151s Get:190 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-statsmodels all 0.14.5+dfsg-1ubuntu1 [4970 kB] 153s Get:191 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-skbio arm64 0.6.2-4build2 [1406 kB] 154s Get:192 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-sklearn-lib arm64 1.7.2+dfsg-3ubuntu1 [6003 kB] 157s Get:193 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-threadpoolctl all 3.1.0-1 [21.3 kB] 157s Get:194 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-sklearn all 1.7.2+dfsg-3ubuntu1 [2616 kB] 158s Get:195 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-sphinx-copybutton all 0.5.2-3 [16.7 kB] 158s Get:196 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-sphinx-design all 0.6.1-2 [894 kB] 158s Get:197 http://ftpmaster.internal/ubuntu resolute/universe arm64 python-scipy-doc all 1.15.3-1ubuntu1 [26.6 kB] 160s Fetched 254 MB in 41s (6153 kB/s) 160s Selecting previously unselected package python3-numpy-dev:arm64. 160s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 88137 files and directories currently installed.) 160s Preparing to unpack .../000-python3-numpy-dev_1%3a2.2.4+ds-1ubuntu1_arm64.deb ... 160s Unpacking python3-numpy-dev:arm64 (1:2.2.4+ds-1ubuntu1) ... 160s Selecting previously unselected package libblas3:arm64. 160s Preparing to unpack .../001-libblas3_3.12.1-7_arm64.deb ... 160s Unpacking libblas3:arm64 (3.12.1-7) ... 160s Selecting previously unselected package libgfortran5:arm64. 160s Preparing to unpack .../002-libgfortran5_15.2.0-7ubuntu1_arm64.deb ... 160s Unpacking libgfortran5:arm64 (15.2.0-7ubuntu1) ... 160s Selecting previously unselected package liblapack3:arm64. 160s Preparing to unpack .../003-liblapack3_3.12.1-7_arm64.deb ... 160s Unpacking liblapack3:arm64 (3.12.1-7) ... 160s Selecting previously unselected package python3-numpy. 160s Preparing to unpack .../004-python3-numpy_1%3a2.2.4+ds-1ubuntu1_arm64.deb ... 160s Unpacking python3-numpy (1:2.2.4+ds-1ubuntu1) ... 160s Selecting previously unselected package libpython3.14-minimal:arm64. 160s Preparing to unpack .../005-libpython3.14-minimal_3.14.0-4_arm64.deb ... 160s Unpacking libpython3.14-minimal:arm64 (3.14.0-4) ... 161s Selecting previously unselected package python3.14-minimal. 161s Preparing to unpack .../006-python3.14-minimal_3.14.0-4_arm64.deb ... 161s Unpacking python3.14-minimal (3.14.0-4) ... 161s Selecting previously unselected package architecture-properties:arm64. 161s Preparing to unpack .../007-architecture-properties_0.2.6_arm64.deb ... 161s Unpacking architecture-properties:arm64 (0.2.6) ... 161s Selecting previously unselected package m4. 161s Preparing to unpack .../008-m4_1.4.20-2_arm64.deb ... 161s Unpacking m4 (1.4.20-2) ... 161s Selecting previously unselected package autoconf. 161s Preparing to unpack .../009-autoconf_2.72-3.1ubuntu1_all.deb ... 161s Unpacking autoconf (2.72-3.1ubuntu1) ... 161s Selecting previously unselected package autotools-dev. 161s Preparing to unpack .../010-autotools-dev_20240727.1_all.deb ... 161s Unpacking autotools-dev (20240727.1) ... 161s Selecting previously unselected package automake. 161s Preparing to unpack .../011-automake_1%3a1.18.1-2_all.deb ... 161s Unpacking automake (1:1.18.1-2) ... 161s Selecting previously unselected package autopoint. 161s Preparing to unpack .../012-autopoint_0.23.2-1_all.deb ... 161s Unpacking autopoint (0.23.2-1) ... 161s Selecting previously unselected package libtcl8.6:arm64. 161s Preparing to unpack .../013-libtcl8.6_8.6.17+dfsg-1_arm64.deb ... 161s Unpacking libtcl8.6:arm64 (8.6.17+dfsg-1) ... 161s Selecting previously unselected package fonts-dejavu-mono. 161s Preparing to unpack .../014-fonts-dejavu-mono_2.37-8_all.deb ... 161s Unpacking fonts-dejavu-mono (2.37-8) ... 161s Selecting previously unselected package fonts-dejavu-core. 161s Preparing to unpack .../015-fonts-dejavu-core_2.37-8_all.deb ... 162s Unpacking fonts-dejavu-core (2.37-8) ... 162s Selecting previously unselected package fontconfig-config. 162s Preparing to unpack .../016-fontconfig-config_2.15.0-2.3ubuntu1_arm64.deb ... 162s Unpacking fontconfig-config (2.15.0-2.3ubuntu1) ... 162s Selecting previously unselected package libfontconfig1:arm64. 162s Preparing to unpack .../017-libfontconfig1_2.15.0-2.3ubuntu1_arm64.deb ... 162s Unpacking libfontconfig1:arm64 (2.15.0-2.3ubuntu1) ... 162s Selecting previously unselected package libxrender1:arm64. 162s Preparing to unpack .../018-libxrender1_1%3a0.9.12-1_arm64.deb ... 162s Unpacking libxrender1:arm64 (1:0.9.12-1) ... 162s Selecting previously unselected package libxft2:arm64. 162s Preparing to unpack .../019-libxft2_2.3.6-1build1_arm64.deb ... 162s Unpacking libxft2:arm64 (2.3.6-1build1) ... 162s Selecting previously unselected package x11-common. 162s Preparing to unpack .../020-x11-common_1%3a7.7+24ubuntu1_all.deb ... 162s Unpacking x11-common (1:7.7+24ubuntu1) ... 162s Selecting previously unselected package libxss1:arm64. 162s Preparing to unpack .../021-libxss1_1%3a1.2.3-1build3_arm64.deb ... 162s Unpacking libxss1:arm64 (1:1.2.3-1build3) ... 162s Selecting previously unselected package libtk8.6:arm64. 163s Preparing to unpack .../022-libtk8.6_8.6.17-1_arm64.deb ... 163s Unpacking libtk8.6:arm64 (8.6.17-1) ... 163s Selecting previously unselected package tk8.6-blt2.5. 163s Preparing to unpack .../023-tk8.6-blt2.5_2.5.3+dfsg-8_arm64.deb ... 163s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-8) ... 163s Selecting previously unselected package blt. 163s Preparing to unpack .../024-blt_2.5.3+dfsg-8_arm64.deb ... 163s Unpacking blt (2.5.3+dfsg-8) ... 163s Selecting previously unselected package libisl23:arm64. 163s Preparing to unpack .../025-libisl23_0.27-1_arm64.deb ... 163s Unpacking libisl23:arm64 (0.27-1) ... 163s Selecting previously unselected package libmpc3:arm64. 163s Preparing to unpack .../026-libmpc3_1.3.1-2_arm64.deb ... 163s Unpacking libmpc3:arm64 (1.3.1-2) ... 163s Selecting previously unselected package cpp-15-aarch64-linux-gnu. 163s Preparing to unpack .../027-cpp-15-aarch64-linux-gnu_15.2.0-7ubuntu1_arm64.deb ... 163s Unpacking cpp-15-aarch64-linux-gnu (15.2.0-7ubuntu1) ... 163s Selecting previously unselected package cpp-15. 163s Preparing to unpack .../028-cpp-15_15.2.0-7ubuntu1_arm64.deb ... 163s Unpacking cpp-15 (15.2.0-7ubuntu1) ... 163s Selecting previously unselected package cpp-aarch64-linux-gnu. 164s Preparing to unpack .../029-cpp-aarch64-linux-gnu_4%3a15.2.0-4ubuntu1_arm64.deb ... 164s Unpacking cpp-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 164s Selecting previously unselected package cpp. 164s Preparing to unpack .../030-cpp_4%3a15.2.0-4ubuntu1_arm64.deb ... 164s Unpacking cpp (4:15.2.0-4ubuntu1) ... 164s Selecting previously unselected package libcc1-0:arm64. 164s Preparing to unpack .../031-libcc1-0_15.2.0-7ubuntu1_arm64.deb ... 164s Unpacking libcc1-0:arm64 (15.2.0-7ubuntu1) ... 164s Selecting previously unselected package libgomp1:arm64. 164s Preparing to unpack .../032-libgomp1_15.2.0-7ubuntu1_arm64.deb ... 164s Unpacking libgomp1:arm64 (15.2.0-7ubuntu1) ... 164s Selecting previously unselected package libitm1:arm64. 164s Preparing to unpack .../033-libitm1_15.2.0-7ubuntu1_arm64.deb ... 164s Unpacking libitm1:arm64 (15.2.0-7ubuntu1) ... 164s Selecting previously unselected package libasan8:arm64. 164s Preparing to unpack .../034-libasan8_15.2.0-7ubuntu1_arm64.deb ... 164s Unpacking libasan8:arm64 (15.2.0-7ubuntu1) ... 164s Selecting previously unselected package liblsan0:arm64. 164s Preparing to unpack .../035-liblsan0_15.2.0-7ubuntu1_arm64.deb ... 164s Unpacking liblsan0:arm64 (15.2.0-7ubuntu1) ... 164s Selecting previously unselected package libtsan2:arm64. 164s Preparing to unpack .../036-libtsan2_15.2.0-7ubuntu1_arm64.deb ... 164s Unpacking libtsan2:arm64 (15.2.0-7ubuntu1) ... 164s Selecting previously unselected package libubsan1:arm64. 164s Preparing to unpack .../037-libubsan1_15.2.0-7ubuntu1_arm64.deb ... 164s Unpacking libubsan1:arm64 (15.2.0-7ubuntu1) ... 164s Selecting previously unselected package libhwasan0:arm64. 164s Preparing to unpack .../038-libhwasan0_15.2.0-7ubuntu1_arm64.deb ... 164s Unpacking libhwasan0:arm64 (15.2.0-7ubuntu1) ... 165s Selecting previously unselected package libgcc-15-dev:arm64. 165s Preparing to unpack .../039-libgcc-15-dev_15.2.0-7ubuntu1_arm64.deb ... 165s Unpacking libgcc-15-dev:arm64 (15.2.0-7ubuntu1) ... 165s Selecting previously unselected package gcc-15-aarch64-linux-gnu. 165s Preparing to unpack .../040-gcc-15-aarch64-linux-gnu_15.2.0-7ubuntu1_arm64.deb ... 165s Unpacking gcc-15-aarch64-linux-gnu (15.2.0-7ubuntu1) ... 166s Selecting previously unselected package gcc-15. 166s Preparing to unpack .../041-gcc-15_15.2.0-7ubuntu1_arm64.deb ... 166s Unpacking gcc-15 (15.2.0-7ubuntu1) ... 166s Selecting previously unselected package gcc-aarch64-linux-gnu. 166s Preparing to unpack .../042-gcc-aarch64-linux-gnu_4%3a15.2.0-4ubuntu1_arm64.deb ... 166s Unpacking gcc-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 166s Selecting previously unselected package gcc. 166s Preparing to unpack .../043-gcc_4%3a15.2.0-4ubuntu1_arm64.deb ... 166s Unpacking gcc (4:15.2.0-4ubuntu1) ... 166s Selecting previously unselected package libstdc++-15-dev:arm64. 166s Preparing to unpack .../044-libstdc++-15-dev_15.2.0-7ubuntu1_arm64.deb ... 166s Unpacking libstdc++-15-dev:arm64 (15.2.0-7ubuntu1) ... 166s Selecting previously unselected package g++-15-aarch64-linux-gnu. 166s Preparing to unpack .../045-g++-15-aarch64-linux-gnu_15.2.0-7ubuntu1_arm64.deb ... 166s Unpacking g++-15-aarch64-linux-gnu (15.2.0-7ubuntu1) ... 167s Selecting previously unselected package g++-15. 167s Preparing to unpack .../046-g++-15_15.2.0-7ubuntu1_arm64.deb ... 167s Unpacking g++-15 (15.2.0-7ubuntu1) ... 167s Selecting previously unselected package g++-aarch64-linux-gnu. 167s Preparing to unpack .../047-g++-aarch64-linux-gnu_4%3a15.2.0-4ubuntu1_arm64.deb ... 167s Unpacking g++-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 167s Selecting previously unselected package g++. 167s Preparing to unpack .../048-g++_4%3a15.2.0-4ubuntu1_arm64.deb ... 167s Unpacking g++ (4:15.2.0-4ubuntu1) ... 167s Selecting previously unselected package build-essential. 167s Preparing to unpack .../049-build-essential_12.12ubuntu1_arm64.deb ... 167s Unpacking build-essential (12.12ubuntu1) ... 167s Selecting previously unselected package cython3. 167s Preparing to unpack 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libfile-stripnondeterminism-perl (1.15.0-1) ... 168s Selecting previously unselected package dh-strip-nondeterminism. 168s Preparing to unpack .../056-dh-strip-nondeterminism_1.15.0-1_all.deb ... 168s Unpacking dh-strip-nondeterminism (1.15.0-1) ... 168s Selecting previously unselected package debugedit. 168s Preparing to unpack .../057-debugedit_1%3a5.2-3_arm64.deb ... 168s Unpacking debugedit (1:5.2-3) ... 168s Selecting previously unselected package dwz. 168s Preparing to unpack .../058-dwz_0.16-2_arm64.deb ... 168s Unpacking dwz (0.16-2) ... 168s Selecting previously unselected package gettext. 168s Preparing to unpack .../059-gettext_0.23.2-1_arm64.deb ... 168s Unpacking gettext (0.23.2-1) ... 168s Selecting previously unselected package intltool-debian. 168s Preparing to unpack .../060-intltool-debian_0.35.0+20060710.6_all.deb ... 168s Unpacking intltool-debian (0.35.0+20060710.6) ... 168s Selecting previously unselected package po-debconf. 168s Preparing to unpack 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unpack .../067-fonts-lyx_2.4.4-2_all.deb ... 169s Unpacking fonts-lyx (2.4.4-2) ... 169s Selecting previously unselected package fonts-mathjax. 169s Preparing to unpack .../068-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 169s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 169s Selecting previously unselected package fonts-open-sans. 169s Preparing to unpack .../069-fonts-open-sans_1.11-2_all.deb ... 169s Unpacking fonts-open-sans (1.11-2) ... 169s Selecting previously unselected package libaec0:arm64. 169s Preparing to unpack .../070-libaec0_1.1.4-2_arm64.deb ... 169s Unpacking libaec0:arm64 (1.1.4-2) ... 169s Selecting previously unselected package libdeflate0:arm64. 169s Preparing to unpack .../071-libdeflate0_1.23-2_arm64.deb ... 169s Unpacking libdeflate0:arm64 (1.23-2) ... 169s Selecting previously unselected package libexpat1-dev:arm64. 169s Preparing to unpack .../072-libexpat1-dev_2.7.3-1_arm64.deb ... 169s Unpacking libexpat1-dev:arm64 (2.7.3-1) ... 169s Selecting previously unselected package libgraphite2-3:arm64. 169s Preparing to unpack .../073-libgraphite2-3_1.3.14-2ubuntu1_arm64.deb ... 169s Unpacking libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 169s Selecting previously unselected package libharfbuzz0b:arm64. 169s Preparing to unpack .../074-libharfbuzz0b_12.1.0-1_arm64.deb ... 169s Unpacking libharfbuzz0b:arm64 (12.1.0-1) ... 170s Selecting previously unselected package libsz2:arm64. 170s Preparing to unpack .../075-libsz2_1.1.4-2_arm64.deb ... 170s Unpacking libsz2:arm64 (1.1.4-2) ... 170s Selecting previously unselected package libhdf5-310:arm64. 170s Preparing to unpack .../076-libhdf5-310_1.14.5+repack-4_arm64.deb ... 170s Unpacking libhdf5-310:arm64 (1.14.5+repack-4) ... 170s Selecting previously unselected package libhdf5-hl-310:arm64. 170s Preparing to unpack .../077-libhdf5-hl-310_1.14.5+repack-4_arm64.deb ... 170s Unpacking libhdf5-hl-310:arm64 (1.14.5+repack-4) ... 170s Selecting previously unselected package libimagequant0:arm64. 170s Preparing to unpack .../078-libimagequant0_2.18.0-1build1_arm64.deb ... 170s Unpacking libimagequant0:arm64 (2.18.0-1build1) ... 170s Selecting previously unselected package libjpeg-turbo8:arm64. 170s Preparing to unpack .../079-libjpeg-turbo8_2.1.5-4ubuntu2_arm64.deb ... 170s Unpacking libjpeg-turbo8:arm64 (2.1.5-4ubuntu2) ... 170s Selecting previously unselected package libjpeg8:arm64. 170s Preparing to unpack .../080-libjpeg8_8c-2ubuntu11_arm64.deb ... 170s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 170s Selecting previously unselected package libjs-jquery. 170s Preparing to unpack .../081-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 170s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 170s Selecting previously unselected package libjs-underscore. 170s Preparing to unpack .../082-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... 170s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 170s Selecting previously unselected package libjs-sphinxdoc. 170s Preparing to unpack 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(1:1.3.dfsg+really1.3.1-1ubuntu2) ... 171s Selecting previously unselected package libpython3.13-dev:arm64. 171s Preparing to unpack .../089-libpython3.13-dev_3.13.9-1_arm64.deb ... 171s Unpacking libpython3.13-dev:arm64 (3.13.9-1) ... 171s Selecting previously unselected package libpython3-dev:arm64. 171s Preparing to unpack .../090-libpython3-dev_3.13.7-2_arm64.deb ... 171s Unpacking libpython3-dev:arm64 (3.13.7-2) ... 171s Selecting previously unselected package libpython3.14-stdlib:arm64. 171s Preparing to unpack .../091-libpython3.14-stdlib_3.14.0-4_arm64.deb ... 171s Unpacking libpython3.14-stdlib:arm64 (3.14.0-4) ... 171s Selecting previously unselected package libpython3.14:arm64. 171s Preparing to unpack .../092-libpython3.14_3.14.0-4_arm64.deb ... 171s Unpacking libpython3.14:arm64 (3.14.0-4) ... 171s Selecting previously unselected package libpython3.14-dev:arm64. 171s Preparing to unpack .../093-libpython3.14-dev_3.14.0-4_arm64.deb ... 171s Unpacking libpython3.14-dev:arm64 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to unpack .../099-libssw0_1.1-15_arm64.deb ... 172s Unpacking libssw0:arm64 (1.1-15) ... 172s Selecting previously unselected package libssw-dev:arm64. 172s Preparing to unpack .../100-libssw-dev_1.1-15_arm64.deb ... 172s Unpacking libssw-dev:arm64 (1.1-15) ... 172s Selecting previously unselected package libjbig0:arm64. 172s Preparing to unpack .../101-libjbig0_2.1-6.1ubuntu2_arm64.deb ... 172s Unpacking libjbig0:arm64 (2.1-6.1ubuntu2) ... 172s Selecting previously unselected package libwebp7:arm64. 172s Preparing to unpack .../102-libwebp7_1.5.0-0.1_arm64.deb ... 172s Unpacking libwebp7:arm64 (1.5.0-0.1) ... 173s Selecting previously unselected package libtiff6:arm64. 173s Preparing to unpack .../103-libtiff6_4.7.0-3ubuntu3_arm64.deb ... 173s Unpacking libtiff6:arm64 (4.7.0-3ubuntu3) ... 173s Selecting previously unselected package libwebpdemux2:arm64. 173s Preparing to unpack .../104-libwebpdemux2_1.5.0-0.1_arm64.deb ... 173s Unpacking libwebpdemux2:arm64 (1.5.0-0.1) ... 173s Selecting previously unselected package libwebpmux3:arm64. 173s Preparing to unpack .../105-libwebpmux3_1.5.0-0.1_arm64.deb ... 173s Unpacking libwebpmux3:arm64 (1.5.0-0.1) ... 173s Selecting previously unselected package libxslt1.1:arm64. 173s Preparing to unpack .../106-libxslt1.1_1.1.43-0.3_arm64.deb ... 173s Unpacking libxslt1.1:arm64 (1.1.43-0.3) ... 173s Selecting previously unselected package libzopfli1. 173s Preparing to unpack .../107-libzopfli1_1.0.3-3_arm64.deb ... 173s Unpacking libzopfli1 (1.0.3-3) ... 173s Selecting previously unselected package node-fortawesome-fontawesome-free. 173s Preparing to unpack .../108-node-fortawesome-fontawesome-free_6.7.2+ds1-1_all.deb ... 173s Unpacking node-fortawesome-fontawesome-free (6.7.2+ds1-1) ... 173s Selecting previously unselected package pybuild-plugin-autopkgtest. 173s Preparing to unpack .../109-pybuild-plugin-autopkgtest_6.20250414_all.deb ... 173s Unpacking pybuild-plugin-autopkgtest (6.20250414) ... 173s Selecting previously unselected package python-biom-format-doc. 174s Preparing to unpack .../110-python-biom-format-doc_2.1.16-1build3_all.deb ... 174s Unpacking python-biom-format-doc (2.1.16-1build3) ... 174s Selecting previously unselected package python-matplotlib-data. 174s Preparing to unpack .../111-python-matplotlib-data_3.10.7+dfsg1-1_all.deb ... 174s Unpacking python-matplotlib-data (3.10.7+dfsg1-1) ... 174s Selecting previously unselected package python-numpy-doc. 174s Preparing to unpack .../112-python-numpy-doc_1%3a2.2.4+ds-1ubuntu1_all.deb ... 174s Unpacking python-numpy-doc (1:2.2.4+ds-1ubuntu1) ... 175s Selecting previously unselected package libjs-mathjax. 175s Preparing to unpack .../113-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 175s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 176s Selecting previously unselected package python-pandas-doc. 177s Preparing to unpack .../114-python-pandas-doc_2.3.3+dfsg-1ubuntu1_all.deb ... 177s Unpacking python-pandas-doc (2.3.3+dfsg-1ubuntu1) ... 179s Selecting previously unselected package python-skbio-doc. 179s Preparing to unpack .../115-python-skbio-doc_0.6.2-4build2_all.deb ... 179s Unpacking python-skbio-doc (0.6.2-4build2) ... 180s Selecting previously unselected package python3-accessible-pygments. 180s Preparing to unpack .../116-python3-accessible-pygments_0.0.5-2_all.deb ... 180s Unpacking python3-accessible-pygments (0.0.5-2) ... 180s Selecting previously unselected package python3.14. 180s Preparing to unpack .../117-python3.14_3.14.0-4_arm64.deb ... 180s Unpacking python3.14 (3.14.0-4) ... 180s Selecting previously unselected package python3-all. 180s Preparing to unpack .../118-python3-all_3.13.7-2_arm64.deb ... 180s Unpacking python3-all (3.13.7-2) ... 180s Selecting previously unselected package python3.13-dev. 180s Preparing to unpack .../119-python3.13-dev_3.13.9-1_arm64.deb ... 180s Unpacking python3.13-dev (3.13.9-1) ... 180s Selecting previously unselected package python3-dev. 180s Preparing to unpack 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(3.13.0-1ubuntu1) ... 181s Selecting previously unselected package python3-click. 181s Preparing to unpack .../126-python3-click_8.2.0+0.really.8.1.8-1_all.deb ... 181s Unpacking python3-click (8.2.0+0.really.8.1.8-1) ... 181s Selecting previously unselected package python3-pytz. 181s Preparing to unpack .../127-python3-pytz_2025.2-4_all.deb ... 181s Unpacking python3-pytz (2025.2-4) ... 181s Selecting previously unselected package python3-pandas-lib:arm64. 181s Preparing to unpack .../128-python3-pandas-lib_2.3.3+dfsg-1ubuntu1_arm64.deb ... 181s Unpacking python3-pandas-lib:arm64 (2.3.3+dfsg-1ubuntu1) ... 181s Selecting previously unselected package python3-pandas. 181s Preparing to unpack .../129-python3-pandas_2.3.3+dfsg-1ubuntu1_all.deb ... 181s Unpacking python3-pandas (2.3.3+dfsg-1ubuntu1) ... 182s Selecting previously unselected package python3-decorator. 182s Preparing to unpack .../130-python3-decorator_5.2.1-2_all.deb ... 182s Unpacking python3-decorator (5.2.1-2) ... 182s Selecting previously unselected package python3-scipy. 182s Preparing to unpack .../131-python3-scipy_1.15.3-1ubuntu1_arm64.deb ... 182s Unpacking python3-scipy (1.15.3-1ubuntu1) ... 183s Selecting previously unselected package python3-biom-format. 183s Preparing to unpack .../132-python3-biom-format_2.1.16-1build3_arm64.deb ... 183s Unpacking python3-biom-format (2.1.16-1build3) ... 183s Selecting previously unselected package python3-brotli. 183s Preparing to unpack .../133-python3-brotli_1.1.0-2build6_arm64.deb ... 183s Unpacking python3-brotli (1.1.0-2build6) ... 183s Selecting previously unselected package python3-soupsieve. 183s Preparing to unpack .../134-python3-soupsieve_2.7-2_all.deb ... 183s Unpacking python3-soupsieve (2.7-2) ... 183s Selecting previously unselected package python3-bs4. 183s Preparing to unpack .../135-python3-bs4_4.13.4-3_all.deb ... 183s Unpacking python3-bs4 (4.13.4-3) ... 183s Selecting previously unselected package python3-msgpack. 183s Preparing to unpack .../136-python3-msgpack_1.0.3-3build5_arm64.deb ... 183s Unpacking python3-msgpack (1.0.3-3build5) ... 184s Selecting previously unselected package python3-cachecontrol. 184s Preparing to unpack .../137-python3-cachecontrol_0.14.3-1_all.deb ... 184s Unpacking python3-cachecontrol (0.14.3-1) ... 184s Selecting previously unselected package python3-contourpy. 184s Preparing to unpack .../138-python3-contourpy_1.3.1-2_arm64.deb ... 184s Unpacking python3-contourpy (1.3.1-2) ... 184s Selecting previously unselected package python3-cycler. 184s Preparing to unpack .../139-python3-cycler_0.12.1-2_all.deb ... 184s Unpacking python3-cycler (0.12.1-2) ... 184s Selecting previously unselected package python3-defusedxml. 184s Preparing to unpack .../140-python3-defusedxml_0.7.1-3_all.deb ... 184s Unpacking python3-defusedxml (0.7.1-3) ... 184s Selecting previously unselected package python3.13-doc. 184s Preparing to unpack .../141-python3.13-doc_3.13.9-1_all.deb ... 184s Unpacking python3.13-doc (3.13.9-1) ... 185s Selecting previously unselected package python3-doc. 185s Preparing to unpack .../142-python3-doc_3.13.7-2_all.deb ... 185s Unpacking python3-doc (3.13.7-2) ... 185s Selecting previously unselected package python3-roman. 185s Preparing to unpack .../143-python3-roman_5.1-1_all.deb ... 185s Unpacking python3-roman (5.1-1) ... 185s Selecting previously unselected package python3-docutils. 185s Preparing to unpack .../144-python3-docutils_0.21.2+dfsg-2_all.deb ... 185s Unpacking python3-docutils (0.21.2+dfsg-2) ... 185s Selecting previously unselected package python3-executing. 185s Preparing to unpack .../145-python3-executing_2.2.0-0.2_all.deb ... 185s Unpacking python3-executing (2.2.0-0.2) ... 185s Selecting previously unselected package python3-platformdirs. 185s Preparing to unpack .../146-python3-platformdirs_4.3.7-1_all.deb ... 185s Unpacking python3-platformdirs (4.3.7-1) ... 185s Selecting previously unselected package python3-fs. 185s 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(0.17.1+dfsg1-1) ... 186s Selecting previously unselected package python3-zopfli. 186s Preparing to unpack .../153-python3-zopfli_0.4.0-1_arm64.deb ... 186s Unpacking python3-zopfli (0.4.0-1) ... 186s Selecting previously unselected package unicode-data. 186s Preparing to unpack .../154-unicode-data_16.0.0-1_all.deb ... 186s Unpacking unicode-data (16.0.0-1) ... 187s Selecting previously unselected package python3-fonttools. 187s Preparing to unpack .../155-python3-fonttools_4.57.0-2build1_arm64.deb ... 187s Unpacking python3-fonttools (4.57.0-2build1) ... 187s Selecting previously unselected package python3-hdmedians. 187s Preparing to unpack .../156-python3-hdmedians_0.14.2-6build2_arm64.deb ... 187s Unpacking python3-hdmedians (0.14.2-6build2) ... 187s Selecting previously unselected package python3-imagesize. 187s Preparing to unpack .../157-python3-imagesize_1.4.1-1_all.deb ... 187s Unpacking python3-imagesize (1.4.1-1) ... 187s Selecting previously unselected package python3-iniconfig. 187s Preparing to unpack .../158-python3-iniconfig_2.1.0-1_all.deb ... 187s Unpacking python3-iniconfig (2.1.0-1) ... 187s Selecting previously unselected package python3-parso. 187s Preparing to unpack .../159-python3-parso_0.8.5-1_all.deb ... 187s Unpacking python3-parso (0.8.5-1) ... 187s Selecting previously unselected package python3-typeshed. 187s Preparing to unpack .../160-python3-typeshed_0.0~git20241223.ea91db2-4_all.deb ... 187s Unpacking python3-typeshed (0.0~git20241223.ea91db2-4) ... 188s Selecting previously unselected package python3-jedi. 188s Preparing to unpack .../161-python3-jedi_0.19.1+ds1-1_all.deb ... 188s Unpacking python3-jedi (0.19.1+ds1-1) ... 189s Selecting previously unselected package python3-traitlets. 189s Preparing to unpack .../162-python3-traitlets_5.14.3+really5.14.3-1_all.deb ... 189s Unpacking python3-traitlets (5.14.3+really5.14.3-1) ... 189s Selecting previously unselected package python3-matplotlib-inline. 189s Preparing to unpack .../163-python3-matplotlib-inline_0.1.7-1_all.deb ... 189s Unpacking python3-matplotlib-inline (0.1.7-1) ... 189s Selecting previously unselected package python3-wcwidth. 189s Preparing to unpack .../164-python3-wcwidth_0.2.13+dfsg1-1_all.deb ... 189s Unpacking python3-wcwidth (0.2.13+dfsg1-1) ... 189s Selecting previously unselected package python3-prompt-toolkit. 189s Preparing to unpack .../165-python3-prompt-toolkit_3.0.52-1_all.deb ... 189s Unpacking python3-prompt-toolkit (3.0.52-1) ... 189s Selecting previously unselected package python3-pure-eval. 189s Preparing to unpack .../166-python3-pure-eval_0.2.3-1_all.deb ... 189s Unpacking python3-pure-eval (0.2.3-1) ... 189s Selecting previously unselected package python3-stack-data. 189s Preparing to unpack .../167-python3-stack-data_0.6.3-1_all.deb ... 189s Unpacking python3-stack-data (0.6.3-1) ... 189s Selecting previously unselected package python3-ipython. 189s Preparing to unpack .../168-python3-ipython_8.35.0-2_all.deb 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unselected package python3.13-tk. 190s Preparing to unpack .../174-python3.13-tk_3.13.9-1_arm64.deb ... 190s Unpacking python3.13-tk (3.13.9-1) ... 190s Selecting previously unselected package python3-tk:arm64. 190s Preparing to unpack .../175-python3-tk_3.13.9-1_arm64.deb ... 190s Unpacking python3-tk:arm64 (3.13.9-1) ... 190s Selecting previously unselected package python3-pil.imagetk:arm64. 190s Preparing to unpack .../176-python3-pil.imagetk_11.3.0-1ubuntu2_arm64.deb ... 190s Unpacking python3-pil.imagetk:arm64 (11.3.0-1ubuntu2) ... 190s Selecting previously unselected package python3-matplotlib. 190s Preparing to unpack .../177-python3-matplotlib_3.10.7+dfsg1-1_arm64.deb ... 190s Unpacking python3-matplotlib (3.10.7+dfsg1-1) ... 191s Selecting previously unselected package python3-natsort. 191s Preparing to unpack .../178-python3-natsort_8.4.0-1_all.deb ... 191s Unpacking python3-natsort (8.4.0-1) ... 191s Selecting previously unselected package sphinx-common. 191s Preparing to unpack .../179-sphinx-common_8.2.3-1ubuntu2_all.deb ... 191s Unpacking sphinx-common (8.2.3-1ubuntu2) ... 191s Selecting previously unselected package python3-alabaster. 191s Preparing to unpack .../180-python3-alabaster_0.7.16-0.1_all.deb ... 191s Unpacking python3-alabaster (0.7.16-0.1) ... 191s Selecting previously unselected package python3-snowballstemmer. 191s Preparing to unpack .../181-python3-snowballstemmer_3.0.1-1_all.deb ... 191s Unpacking python3-snowballstemmer (3.0.1-1) ... 191s Selecting previously unselected package python3-sphinx. 191s Preparing to unpack .../182-python3-sphinx_8.2.3-1ubuntu2_all.deb ... 191s Unpacking python3-sphinx (8.2.3-1ubuntu2) ... 191s Selecting previously unselected package python3-numpydoc. 191s Preparing to unpack .../183-python3-numpydoc_1.9.0-1_all.deb ... 191s Unpacking python3-numpydoc (1.9.0-1) ... 191s Selecting previously unselected package python3-patsy. 192s Preparing to unpack .../184-python3-patsy_1.0.2-1_all.deb ... 192s Unpacking python3-patsy (1.0.2-1) ... 192s Selecting previously unselected package python3-pluggy. 192s Preparing to unpack .../185-python3-pluggy_1.6.0-1_all.deb ... 192s Unpacking python3-pluggy (1.6.0-1) ... 192s Selecting previously unselected package python3-pydata-sphinx-theme. 192s Preparing to unpack .../186-python3-pydata-sphinx-theme_0.16.1+dfsg-3_all.deb ... 192s Unpacking python3-pydata-sphinx-theme (0.16.1+dfsg-3) ... 192s Selecting previously unselected package python3-pytest. 192s Preparing to unpack .../187-python3-pytest_8.3.5-2_all.deb ... 192s Unpacking python3-pytest (8.3.5-2) ... 192s Selecting previously unselected package python3-statsmodels-lib:arm64. 192s Preparing to unpack .../188-python3-statsmodels-lib_0.14.5+dfsg-1ubuntu1_arm64.deb ... 192s Unpacking python3-statsmodels-lib:arm64 (0.14.5+dfsg-1ubuntu1) ... 192s Selecting previously unselected package python3-statsmodels. 192s Preparing to unpack .../189-python3-statsmodels_0.14.5+dfsg-1ubuntu1_all.deb ... 192s Unpacking python3-statsmodels (0.14.5+dfsg-1ubuntu1) ... 193s Selecting previously unselected package python3-skbio. 193s Preparing to unpack .../190-python3-skbio_0.6.2-4build2_arm64.deb ... 193s Unpacking python3-skbio (0.6.2-4build2) ... 193s Selecting previously unselected package python3-sklearn-lib:arm64. 193s Preparing to unpack .../191-python3-sklearn-lib_1.7.2+dfsg-3ubuntu1_arm64.deb ... 193s Unpacking python3-sklearn-lib:arm64 (1.7.2+dfsg-3ubuntu1) ... 193s Selecting previously unselected package python3-threadpoolctl. 194s Preparing to unpack .../192-python3-threadpoolctl_3.1.0-1_all.deb ... 194s Unpacking python3-threadpoolctl (3.1.0-1) ... 194s Selecting previously unselected package python3-sklearn. 194s Preparing to unpack .../193-python3-sklearn_1.7.2+dfsg-3ubuntu1_all.deb ... 194s Unpacking python3-sklearn (1.7.2+dfsg-3ubuntu1) ... 194s Selecting previously unselected package python3-sphinx-copybutton. 194s Preparing to unpack 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Setting up libxrender1:arm64 (1:0.9.12-1) ... 196s Setting up python3-joblib (1.4.2-4) ... 197s Setting up python3-parso (0.8.5-1) ... 197s Setting up python3-lz4 (4.4.4+dfsg-3) ... 198s Setting up python3-defusedxml (0.7.1-3) ... 198s Setting up libarchive-zip-perl (1.68-1) ... 198s Setting up python3-asttokens (3.0.0-2) ... 199s Setting up architecture-properties:arm64 (0.2.6) ... 199s Setting up python3-alabaster (0.7.16-0.1) ... 199s Setting up fonts-lyx (2.4.4-2) ... 199s Setting up libdebhelper-perl (13.24.2ubuntu1) ... 199s Setting up libpython3.14-minimal:arm64 (3.14.0-4) ... 199s Setting up python3-threadpoolctl (3.1.0-1) ... 200s Setting up x11-common (1:7.7+24ubuntu1) ... 200s Setting up libdeflate0:arm64 (1.23-2) ... 200s Setting up m4 (1.4.20-2) ... 200s Setting up libqhull-r8.0:arm64 (2020.2-7) ... 200s Setting up python3-pytz (2025.2-4) ... 201s Setting up node-fortawesome-fontawesome-free (6.7.2+ds1-1) ... 201s Setting up libgomp1:arm64 (15.2.0-7ubuntu1) ... 201s Setting up python3-click (8.2.0+0.really.8.1.8-1) ... 201s Setting up fonts-open-sans (1.11-2) ... 201s Setting up libjbig0:arm64 (2.1-6.1ubuntu2) ... 201s Setting up libaec0:arm64 (1.1.4-2) ... 202s Setting up python3-platformdirs (4.3.7-1) ... 202s Setting up python3-natsort (8.4.0-1) ... 202s Setting up python3-fs (2.4.16-9ubuntu1) ... 203s Setting up unicode-data (16.0.0-1) ... 203s Setting up python3-roman (5.1-1) ... 204s Setting up python3-decorator (5.2.1-2) ... 204s Setting up autotools-dev (20240727.1) ... 204s Setting up libblas3:arm64 (3.12.1-7) ... 204s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 204s Setting up libexpat1-dev:arm64 (2.7.3-1) ... 204s Setting up python3-wcwidth (0.2.13+dfsg1-1) ... 205s Setting up libzopfli1 (1.0.3-3) ... 205s Setting up python3-accessible-pygments (0.0.5-2) ... 205s Setting up python3-typeshed 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up libubsan1:arm64 (15.2.0-7ubuntu1) ... 212s Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu2) ... 212s Setting up dwz (0.16-2) ... 212s Setting up libhwasan0:arm64 (15.2.0-7ubuntu1) ... 212s Setting up python3-traitlets (5.14.3+really5.14.3-1) ... 212s Setting up libasan8:arm64 (15.2.0-7ubuntu1) ... 212s Setting up libjson-perl (4.10000-1) ... 212s Setting up libxslt1.1:arm64 (1.1.43-0.3) ... 212s Setting up debugedit (1:5.2-3) ... 212s Setting up libopenjp2-7:arm64 (2.5.3-2.1) ... 212s Setting up libharfbuzz0b:arm64 (12.1.0-1) ... 212s Setting up sgml-base (1.31+nmu1) ... 212s Setting up python3-msgpack (1.0.3-3build5) ... 213s Setting up libxss1:arm64 (1:1.2.3-1build3) ... 213s Setting up python3-cachecontrol (0.14.3-1) ... 213s Setting up libtsan2:arm64 (15.2.0-7ubuntu1) ... 213s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 213s Setting up python3-mpmath (1.3.0-2) ... 215s Setting up libisl23:arm64 (0.27-1) ... 215s Setting up python-matplotlib-data 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SyntaxWarning: 'return' in a 'finally' block 245s return p.returncode 246s Setting up cpp-15-aarch64-linux-gnu (15.2.0-7ubuntu1) ... 246s Setting up liblapack3:arm64 (3.12.1-7) ... 246s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 246s Setting up gettext (0.23.2-1) ... 246s Setting up libgcc-15-dev:arm64 (15.2.0-7ubuntu1) ... 246s Setting up python3-jedi (0.19.1+ds1-1) ... 247s Setting up libssw-dev:arm64 (1.1-15) ... 247s Setting up libpython3.14-stdlib:arm64 (3.14.0-4) ... 247s Setting up fontconfig-config (2.15.0-2.3ubuntu1) ... 247s Setting up python3-pytest (8.3.5-2) ... 249s Setting up libwebpdemux2:arm64 (1.5.0-0.1) ... 249s Setting up python3-bs4 (4.13.4-3) ... 250s Setting up python3-zopfli (0.4.0-1) ... 250s Setting up intltool-debian (0.35.0+20060710.6) ... 250s Setting up python3-matplotlib-inline (0.1.7-1) ... 250s Setting up python3.13-doc (3.13.9-1) ... 250s Setting up cpp-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 250s Setting up libstdc++-15-dev:arm64 (15.2.0-7ubuntu1) ... 250s Setting up python3-ipython (8.35.0-2) ... 252s /usr/lib/python3/dist-packages/IPython/core/interactiveshell.py:3141: SyntaxWarning: 'return' in a 'finally' block 252s return result 253s Setting up libraqm0:arm64 (0.10.3-1) ... 253s Setting up libpython3.13-dev:arm64 (3.13.9-1) ... 253s Setting up python-scipy-doc (1.15.3-1ubuntu1) ... 253s Setting up python3-numpy (1:2.2.4+ds-1ubuntu1) ... 260s Setting up libjs-sphinxdoc (8.2.3-1ubuntu2) ... 260s Setting up dh-strip-nondeterminism (1.15.0-1) ... 260s Setting up libhdf5-310:arm64 (1.14.5+repack-4) ... 260s Setting up python3-hdmedians (0.14.2-6build2) ... 261s Setting up cpp-15 (15.2.0-7ubuntu1) ... 261s Setting up python3-lxml:arm64 (6.0.2-1) ... 261s Setting up libtiff6:arm64 (4.7.0-3ubuntu3) ... 261s Setting up cpp (4:15.2.0-4ubuntu1) ... 261s Setting up xml-core (0.19) ... 262s Setting up libpython3.14:arm64 (3.14.0-4) ... 262s Setting up python3-contourpy (1.3.1-2) ... 262s Setting up libpython3.14-dev:arm64 (3.14.0-4) ... 262s Setting up libfontconfig1:arm64 (2.15.0-2.3ubuntu1) ... 262s Setting up python3.14 (3.14.0-4) ... 264s Setting up python3-statsmodels-lib:arm64 (0.14.5+dfsg-1ubuntu1) ... 264s Setting up python3-doc (3.13.7-2) ... 264s Setting up python-numpy-doc (1:2.2.4+ds-1ubuntu1) ... 264s Setting up libhdf5-hl-310:arm64 (1.14.5+repack-4) ... 264s Setting up libxft2:arm64 (2.3.6-1build1) ... 264s Setting up gcc-15-aarch64-linux-gnu (15.2.0-7ubuntu1) ... 264s Setting up python3-scipy (1.15.3-1ubuntu1) ... 275s /usr/lib/python3/dist-packages/scipy/optimize/_optimize.py:921: SyntaxWarning: 'break' in a 'finally' block 275s break 279s Setting up libpython3-dev:arm64 (3.13.7-2) ... 279s Setting up python3.14-dev (3.14.0-4) ... 279s Setting up python-pandas-doc (2.3.3+dfsg-1ubuntu1) ... 279s Setting up python3.13-dev (3.13.9-1) ... 279s Setting up po-debconf (1.0.21+nmu1) ... 279s Setting up libtk8.6:arm64 (8.6.17-1) ... 279s Setting up python3-pandas-lib:arm64 (2.3.3+dfsg-1ubuntu1) ... 279s Setting up python3-sklearn-lib:arm64 (1.7.2+dfsg-3ubuntu1) ... 279s Setting up python3-h5py-serial (3.13.0-1ubuntu1) ... 280s Setting up python3-all (3.13.7-2) ... 280s Setting up python3.13-tk (3.13.9-1) ... 281s Setting up python-biom-format-doc (2.1.16-1build3) ... 281s Setting up python3-patsy (1.0.2-1) ... 281s Setting up python-skbio-doc (0.6.2-4build2) ... 281s Setting up python3-pil:arm64 (11.3.0-1ubuntu2) ... 283s Setting up gcc-15 (15.2.0-7ubuntu1) ... 283s Setting up python3-pandas (2.3.3+dfsg-1ubuntu1) ... 303s Setting up g++-15-aarch64-linux-gnu (15.2.0-7ubuntu1) ... 303s Setting up libpython3-all-dev:arm64 (3.13.7-2) ... 303s Setting up sphinx-common (8.2.3-1ubuntu2) ... 303s Setting up python3-dev (3.13.7-2) ... 303s Setting up python3-h5py (3.13.0-1ubuntu1) ... 304s Setting up python3-sklearn (1.7.2+dfsg-3ubuntu1) ... 312s Setting up python3-statsmodels (0.14.5+dfsg-1ubuntu1) ... 324s Setting up g++-15 (15.2.0-7ubuntu1) ... 324s Setting up python3-all-dev (3.13.7-2) ... 324s Setting up gcc-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 324s Setting up tk8.6-blt2.5 (2.5.3+dfsg-8) ... 324s Setting up python3.14-tk (3.14.0-4) ... 324s Setting up libtool (2.5.4-7) ... 324s Setting up blt (2.5.3+dfsg-8) ... 324s Setting up python3-tk:arm64 (3.13.9-1) ... 324s Setting up gcc (4:15.2.0-4ubuntu1) ... 324s Setting up dh-autoreconf (21) ... 324s Setting up python3-biom-format (2.1.16-1build3) ... 325s Setting up python3-pil.imagetk:arm64 (11.3.0-1ubuntu2) ... 325s Setting up python3-skbio (0.6.2-4build2) ... 328s Setting up g++-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 328s Setting up debhelper (13.24.2ubuntu1) ... 328s Setting up g++ (4:15.2.0-4ubuntu1) ... 328s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 328s Setting up build-essential (12.12ubuntu1) ... 328s Setting up pybuild-plugin-autopkgtest (6.20250414) ... 328s Setting up python3-ufolib2 (0.17.1+dfsg1-1) ... 329s Setting up python3-fonttools (4.57.0-2build1) ... 332s Setting up python3-matplotlib (3.10.7+dfsg1-1) ... 339s Processing triggers for libc-bin (2.42-2ubuntu2) ... 339s Processing triggers for systemd (257.9-0ubuntu2) ... 339s Processing triggers for man-db (2.13.1-1) ... 342s Processing triggers for install-info (7.2-5) ... 342s Processing triggers for sgml-base (1.31+nmu1) ... 342s Setting up docutils-common (0.21.2+dfsg-2) ... 343s Processing triggers for sgml-base (1.31+nmu1) ... 343s Setting up python3-docutils (0.21.2+dfsg-2) ... 344s Setting up python3-sphinx (8.2.3-1ubuntu2) ... 347s Setting up python3-sphinx-copybutton (0.5.2-3) ... 348s Setting up python3-sphinx-design (0.6.1-2) ... 348s Setting up python3-numpydoc (1.9.0-1) ... 349s Setting up python3-pydata-sphinx-theme (0.16.1+dfsg-3) ... 351s autopkgtest [12:34:01]: test pybuild-autopkgtest: pybuild-autopkgtest 351s autopkgtest [12:34:01]: test pybuild-autopkgtest: [----------------------- 351s pybuild-autopkgtest 352s I: pybuild base:311: cd /tmp/autopkgtest.RnMn9l/autopkgtest_tmp/build; python3.14 -m pytest --pyargs skbio 354s ERROR: while parsing the following warning configuration: 354s 354s ignore::skbio.util.SkbioWarning 354s 354s This error occurred: 354s 354s Traceback (most recent call last): 354s File "/usr/lib/python3/dist-packages/h5py/__init__.py", line 24, in 354s from . import _debian_h5py_serial as _h5py 354s File "/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py", line 25, in 354s from . import _errors 354s ImportError: cannot import name '_errors' from partially initialized module 'h5py._debian_h5py_serial' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py) 354s 354s During handling of the above exception, another exception occurred: 354s 354s Traceback (most recent call last): 354s File "/usr/lib/python3/dist-packages/_pytest/config/__init__.py", line 1918, in parse_warning_filter 354s category: type[Warning] = _resolve_warning_category(category_) 354s ~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^ 354s File "/usr/lib/python3/dist-packages/_pytest/config/__init__.py", line 1956, in _resolve_warning_category 354s m = __import__(module, None, None, [klass]) 354s File "/usr/lib/python3/dist-packages/skbio/__init__.py", line 12, in 354s import skbio.io # noqa 354s ^^^^^^^^^^^^^^^ 354s File "/usr/lib/python3/dist-packages/skbio/io/__init__.py", line 251, in 354s from .registry import write, read, sniff, create_format, io_registry 354s File "/usr/lib/python3/dist-packages/skbio/io/registry.py", line 181, in 354s from .util import _resolve_file, open_file, open_files, _d as _open_kwargs 354s File "/usr/lib/python3/dist-packages/skbio/io/util.py", line 32, in 354s from skbio.io._iosources import get_io_sources, get_compression_handler 354s File "/usr/lib/python3/dist-packages/skbio/io/_iosources.py", line 18, in 354s from ._fileobject import ( 354s ...<3 lines>... 354s ) 354s File "/usr/lib/python3/dist-packages/skbio/io/_fileobject.py", line 10, in 354s import h5py 354s File "/usr/lib/python3/dist-packages/h5py/__init__.py", line 26, in 354s from . import _debian_h5py_mpi as _h5py 354s ImportError: cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py) 354s 354s 354s E: pybuild pybuild:389: test: plugin distutils failed with: exit code=4: cd /tmp/autopkgtest.RnMn9l/autopkgtest_tmp/build; python3.14 -m pytest --pyargs skbio 354s I: pybuild base:311: cd /tmp/autopkgtest.RnMn9l/autopkgtest_tmp/build; python3.13 -m pytest --pyargs skbio 361s ============================= test session starts ============================== 361s platform linux -- Python 3.13.9, pytest-8.3.5, pluggy-1.6.0 361s rootdir: /tmp/autopkgtest.RnMn9l/autopkgtest_tmp/build 361s configfile: pyproject.toml 361s plugins: typeguard-4.4.2 361s collected 2793 items 361s 361s alignment/tests/test_pairwise.py ......................... [ 0%] 361s alignment/tests/test_path.py ................. [ 1%] 361s alignment/tests/test_ssw.py ........................... [ 2%] 362s alignment/tests/test_tabular_msa.py .................................... [ 3%] 362s ........................................................................ [ 6%] 364s ........................................................................ [ 8%] 366s ........................................................................ [ 11%] 367s ........................................................................ [ 14%] 367s ........................................................................ [ 16%] 367s ..... [ 16%] 367s diversity/alpha/tests/test_ace.py .. [ 16%] 372s diversity/alpha/tests/test_base.py ............................... [ 18%] 372s diversity/alpha/tests/test_chao1.py ... [ 18%] 372s diversity/alpha/tests/test_gini.py .... [ 18%] 381s diversity/alpha/tests/test_lladser.py ............ [ 18%] 381s diversity/alpha/tests/test_pd.py ................ [ 19%] 382s diversity/beta/tests/test_unifrac.py ............................ [ 20%] 382s diversity/tests/test_block.py ........... [ 20%] 382s diversity/tests/test_driver.py ..................................... [ 21%] 382s diversity/tests/test_util.py ................ [ 22%] 382s embedding/tests/test_embedding.py ................... [ 23%] 382s embedding/tests/test_protein.py .............. [ 23%] 382s io/format/tests/test_base.py ................................ [ 24%] 383s io/format/tests/test_binary_dm.py ......... [ 25%] 383s io/format/tests/test_biom.py ... [ 25%] 383s io/format/tests/test_blast6.py ........... [ 25%] 384s io/format/tests/test_blast7.py .............. [ 26%] 384s io/format/tests/test_clustal.py ............. [ 26%] 385s io/format/tests/test_embed.py ........ [ 26%] 390s io/format/tests/test_embl.py ............................... [ 28%] 390s io/format/tests/test_emptyfile.py .. [ 28%] 406s io/format/tests/test_fasta.py ................ [ 28%] 417s io/format/tests/test_fastq.py ............... [ 29%] 419s io/format/tests/test_genbank.py ..................... [ 30%] 420s io/format/tests/test_gff3.py ........................ [ 30%] 421s io/format/tests/test_lsmat.py ....... [ 31%] 421s io/format/tests/test_newick.py ....... [ 31%] 422s io/format/tests/test_ordination.py ..... [ 31%] 425s io/format/tests/test_phylip.py ....... [ 31%] 426s io/format/tests/test_qseq.py ...... [ 32%] 427s io/format/tests/test_sample_metadata.py .... [ 32%] 427s io/format/tests/test_sequence_feature_vocabulary.py .... [ 32%] 429s io/format/tests/test_stockholm.py ...................................... [ 33%] 430s ..................................... [ 34%] 430s io/format/tests/test_taxdump.py ...... [ 35%] 430s io/tests/test_iosources.py .......... [ 35%] 430s io/tests/test_registry.py .............................................. [ 37%] 431s ................................................ [ 38%] 436s io/tests/test_util.py .........................................sssssssss [ 40%] 444s sssssssssssssssssssss................................................... [ 43%] 455s ........................................................................ [ 45%] 460s .......................... [ 46%] 460s metadata/tests/test_enan.py ... [ 46%] 462s metadata/tests/test_intersection.py ............... [ 47%] 462s metadata/tests/test_interval.py ........................................ [ 48%] 462s ............................... [ 49%] 463s metadata/tests/test_io.py .............................................. [ 51%] 465s ............................................................ [ 53%] 466s metadata/tests/test_metadata.py ........................................ [ 55%] 466s .................... [ 55%] 466s metadata/tests/test_metadata_column.py ................................. [ 57%] 466s ........................................ [ 58%] 466s metadata/tests/test_missing.py ................ [ 59%] 466s metadata/tests/test_mixin.py ........................................... [ 60%] 466s ....................................................... [ 62%] 466s sequence/tests/test_alphabet.py ..... [ 62%] 466s sequence/tests/test_distance.py .......................... [ 63%] 466s sequence/tests/test_dna.py ... [ 63%] 466s sequence/tests/test_genetic_code.py .......................... [ 64%] 466s sequence/tests/test_grammared_sequence.py .............................. [ 65%] 467s ................... [ 66%] 467s sequence/tests/test_nucleotide_sequences.py ............................ [ 67%] 467s . [ 67%] 467s sequence/tests/test_protein.py ........... [ 67%] 467s sequence/tests/test_rna.py ... [ 68%] 467s sequence/tests/test_sequence.py ........................................ [ 69%] 467s ........................................................................ [ 72%] 467s ........................................................................ [ 74%] 468s ........................................................................ [ 77%] 468s ....... [ 77%] 468s sequence/tests/test_substitution.py ........ [ 77%] 468s stats/distance/tests/test_anosim.py .... [ 77%] 468s stats/distance/tests/test_base.py ...................................... [ 79%] 468s .......................................................... [ 81%] 481s stats/distance/tests/test_bioenv.py ................. [ 81%] 488s stats/distance/tests/test_mantel.py .................................... [ 83%] 488s ........ [ 83%] 489s stats/distance/tests/test_permanova.py ..... [ 83%] 518s stats/distance/tests/test_permdisp.py .............. [ 84%] 518s stats/evolve/tests/test_hommola.py ............ [ 84%] 518s stats/ordination/tests/test_canonical_correspondence_analysis.py ...... [ 84%] 518s stats/ordination/tests/test_correspondence_analysis.py ........ [ 85%] 519s stats/ordination/tests/test_ordination_results.py ............. [ 85%] 520s stats/ordination/tests/test_principal_coordinate_analysis.py ........... [ 86%] 520s . [ 86%] 520s stats/ordination/tests/test_redundancy_analysis.py .... [ 86%] 520s stats/ordination/tests/test_util.py .......... [ 86%] 522s stats/tests/test_composition.py ........................................ [ 87%] 556s .......................................... [ 89%] 557s stats/tests/test_gradient.py .......................... [ 90%] 557s stats/tests/test_misc.py ... [ 90%] 561s stats/tests/test_power.py ........................................... [ 92%] 563s stats/tests/test_subsample.py ............ [ 92%] 563s table/tests/test_base.py . [ 92%] 563s tests/test_base.py ..... [ 92%] 563s tests/test_workflow.py ................. [ 93%] 563s tree/tests/test_majority_rule.py ...... [ 93%] 565s tree/tests/test_nj.py ............................ [ 94%] 565s tree/tests/test_tree.py ................................................ [ 96%] 565s ........................................................ [ 98%] 565s util/tests/test_decorator.py ........ [ 98%] 566s util/tests/test_misc.py .................... [ 99%] 566s util/tests/test_plotting.py ...... [ 99%] 567s util/tests/test_testing.py ............... [100%] 567s 567s =============================== warnings summary =============================== 567s alignment/tests/test_pairwise.py::PairwiseAlignmentTests::test_compute_score_and_traceback_matrices 567s /usr/lib/python3/dist-packages/skbio/util/_warning.py:56: DeprecationWarning: make_identity_substitution_matrix is deprecated as of 0.4.0. It has been replaced by the SubstitutionMatrix class. Additional details at https://github.com/scikit-bio/scikit-bio/pull/1913. 567s warn( 567s 567s alignment/tests/test_ssw.py::TestAlignStripedSmithWaterman::test_invalid_type 567s /usr/lib/python3/dist-packages/skbio/util/_warning.py:56: DeprecationWarning: local_pairwise_align_ssw is deprecated as of 0.5.8. It will be removed in favor of more general purpose and performant aligners. Additional details at https://github.com/scikit-bio/scikit-bio/issues/1814. 567s warn( 567s 567s alignment/tests/test_tabular_msa.py::TestGapFrequencies::test_no_positions_relative 567s /usr/lib/python3/dist-packages/skbio/alignment/_tabular_msa.py:1648: RuntimeWarning: invalid value encountered in divide 567s gap_freqs /= length 567s 567s diversity/tests/test_block.py::ParallelBetaDiversity::test_block_beta_diversity 567s /usr/lib/python3/dist-packages/skbio/util/_warning.py:56: DeprecationWarning: partial_beta_diversity is deprecated as of 0.5.0. The return type is unstable. Developer caution is advised. The resulting DistanceMatrix object will include zeros when distance has not been calculated, and therefore can be misleading. 567s warn( 567s 567s diversity/tests/test_driver.py::BetaDiversityTests::test_available_metrics 567s diversity/tests/test_driver.py::BetaDiversityTests::test_qualitative_bug_issue_1549 567s diversity/tests/test_driver.py::BetaDiversityTests::test_qualitative_bug_issue_1549 567s /usr/lib/python3/dist-packages/scipy/spatial/distance.py:2322: DeprecationWarning: The sokalmichener metric is deprecated since SciPy 1.15.0 and will be removed in SciPy 1.17.0. Replace usage of 'sokalmichener(u, v)' with 'rogerstanimoto(u, v)'. 567s return pdist_fn(X, out=out, **kwargs) 567s 567s embedding/tests/test_protein.py: 3 warnings 567s sequence/tests/test_protein.py: 18 warnings 567s /usr/lib/python3/dist-packages/skbio/sequence/_protein.py:257: DeprecationWarning: `in1d` is deprecated. Use `np.isin` instead. 567s return np.in1d(self._bytes, self._stop_codes) 567s 567s metadata/tests/test_io.py: 10 warnings 567s /usr/lib/python3/dist-packages/skbio/metadata/io.py:411: FutureWarning: Downcasting behavior in `replace` is deprecated and will be removed in a future version. To retain the old behavior, explicitly call `result.infer_objects(copy=False)`. To opt-in to the future behavior, set `pd.set_option('future.no_silent_downcasting', True)` 567s series = series.replace("", np.nan) 567s 567s metadata/tests/test_io.py::TestSave::test_numeric_metadata_column_insdc_missing 567s metadata/tests/test_metadata_column.py::TestToSeries::test_encode_missing_true 567s metadata/tests/test_metadata_column.py::TestToDataframe::test_encode_missing_true 567s /usr/lib/python3/dist-packages/skbio/metadata/_metadata.py:1102: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise an error in a future version of pandas. Value '['missing']' has dtype incompatible with float64, please explicitly cast to a compatible dtype first. 567s series[missing.index] = missing 567s 567s metadata/tests/test_missing.py::TestISNDC::test_roundtrip_all_missing_object 567s metadata/tests/test_missing.py::TestOmitted::test_roundtrip_all_missing_object 567s /usr/lib/python3/dist-packages/skbio/metadata/tests/test_missing.py:53: FutureWarning: Mismatched null-like values nan and None found. In a future version, pandas equality-testing functions (e.g. assert_frame_equal) will consider these not-matching and raise. 567s pdt.assert_series_equal(missing, series.astype(object)) 567s 567s metadata/tests/test_missing.py::TestOmitted::test_roundtrip_bool 567s metadata/tests/test_missing.py::TestOmitted::test_roundtrip_string 567s /usr/lib/python3/dist-packages/skbio/metadata/tests/test_missing.py:31: FutureWarning: Mismatched null-like values nan and None found. In a future version, pandas equality-testing functions (e.g. assert_frame_equal) will consider these not-matching and raise. 567s pdt.assert_series_equal(missing, series[1:].astype(object)) 567s 567s sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_has_nondegenerates 567s sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_has_nondegenerates 567s sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_has_nondegenerates 567s sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_has_nondegenerates 567s sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_has_nondegenerates 567s sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_has_nondegenerates 567s /usr/lib/python3/dist-packages/skbio/sequence/_grammared_sequence.py:639: DeprecationWarning: has_nondegenerates is deprecated as of 0.5.0 567s warn("has_nondegenerates is deprecated as of 0.5.0", DeprecationWarning) 567s 567s sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerate_chars 567s sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerate_chars 567s sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerate_chars 567s sequence/tests/test_nucleotide_sequences.py::TestNucleotideSequence::test_nondegenerate_chars 567s sequence/tests/test_nucleotide_sequences.py::TestNucleotideSequence::test_nondegenerate_chars 567s sequence/tests/test_nucleotide_sequences.py::TestNucleotideSequence::test_nondegenerate_chars 567s sequence/tests/test_nucleotide_sequences.py::TestNucleotideSequence::test_nondegenerate_chars 567s sequence/tests/test_protein.py::TestProtein::test_nondegenerate_chars 567s sequence/tests/test_protein.py::TestProtein::test_nondegenerate_chars 567s /usr/lib/python3/dist-packages/skbio/sequence/_grammared_sequence.py:313: DeprecationWarning: nondegenerate_chars is deprecated as of 0.5.0 567s warn("nondegenerate_chars is deprecated as of 0.5.0", DeprecationWarning) 567s 567s sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerates 567s sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerates 567s sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerates 567s sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerates 567s sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerates 567s sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerates 567s sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerates 567s /usr/lib/python3/dist-packages/skbio/sequence/_grammared_sequence.py:572: DeprecationWarning: nondenengerates is deprecated as of 0.5.0. 567s warn("nondenengerates is deprecated as of 0.5.0.", DeprecationWarning) 567s 567s sequence/tests/test_sequence.py::TestSequence::test_frequencies_empty_sequence 567s /usr/lib/python3/dist-packages/skbio/sequence/_sequence.py:1824: RuntimeWarning: invalid value encountered in divide 567s obs_counts = obs_counts / len(self) 567s 567s sequence/tests/test_sequence.py: 12 warnings 567s /usr/lib/python3/dist-packages/skbio/sequence/_sequence.py:2209: DeprecationWarning: `in1d` is deprecated. Use `np.isin` instead. 567s gaps = np.in1d(seq, gap_chars) 567s 567s stats/distance/tests/test_mantel.py::MantelTests::test_no_variation_pearson 567s /usr/lib/python3/dist-packages/skbio/stats/distance/_mantel.py:364: ConstantInputWarning: All values in data are exactly equal; results may not be reliable. 567s warnings.warn(ConstantInputWarning()) 567s 567s stats/distance/tests/test_mantel.py::MantelTests::test_no_variation_spearman 567s /usr/lib/python3/dist-packages/skbio/stats/distance/_mantel.py:483: ConstantInputWarning: All values in data are exactly equal; results may not be reliable. 567s warnings.warn(ConstantInputWarning()) 567s 567s stats/distance/tests/test_permdisp.py::testPERMDISP::test_call_via_series 567s stats/distance/tests/test_permdisp.py::testPERMDISP::test_call_via_series 567s /usr/lib/python3/dist-packages/skbio/stats/ordination/_principal_coordinate_analysis.py:146: RuntimeWarning: The result contains negative eigenvalues. Please compare their magnitude with the magnitude of some of the largest positive eigenvalues. If the negative ones are smaller, it's probably safe to ignore them, but if they are large in magnitude, the results won't be useful. See the Notes section for more details. The smallest eigenvalue is -0.00657367754955049 and the largest is 0.17668321589384078. 567s warn( 567s 567s stats/distance/tests/test_permdisp.py::testPERMDISP::test_centroids_eq_groups 567s stats/distance/tests/test_permdisp.py::testPERMDISP::test_no_permuations 567s /usr/lib/python3/dist-packages/skbio/stats/ordination/_principal_coordinate_analysis.py:146: RuntimeWarning: The result contains negative eigenvalues. Please compare their magnitude with the magnitude of some of the largest positive eigenvalues. If the negative ones are smaller, it's probably safe to ignore them, but if they are large in magnitude, the results won't be useful. See the Notes section for more details. The smallest eigenvalue is -13.541846544269621 and the largest is 16.587201374785895. 567s warn( 567s 567s stats/distance/tests/test_permdisp.py::testPERMDISP::test_centroids_mixedgroups 567s stats/distance/tests/test_permdisp.py::testPERMDISP::test_centroids_uneq_groups 567s /usr/lib/python3/dist-packages/skbio/stats/ordination/_principal_coordinate_analysis.py:146: RuntimeWarning: The result contains negative eigenvalues. Please compare their magnitude with the magnitude of some of the largest positive eigenvalues. If the negative ones are smaller, it's probably safe to ignore them, but if they are large in magnitude, the results won't be useful. See the Notes section for more details. The smallest eigenvalue is -15.629533932395201 and the largest is 20.903154277938906. 567s warn( 567s 567s stats/distance/tests/test_permdisp.py::testPERMDISP::test_centroids_null 567s /usr/lib/python3/dist-packages/skbio/stats/ordination/_principal_coordinate_analysis.py:190: RuntimeWarning: invalid value encountered in divide 567s proportion_explained = eigvals / sum_eigenvalues 567s 567s stats/distance/tests/test_permdisp.py::testPERMDISP::test_centroids_null 567s /usr/lib/python3/dist-packages/scipy/stats/_axis_nan_policy.py:618: ConstantInputWarning: Each of the input arrays is constant; the F statistic is not defined or infinite 567s res = hypotest_fun_out(*samples, axis=axis, **kwds) 567s 567s stats/distance/tests/test_permdisp.py::testPERMDISP::test_confirm_betadispr_results 567s stats/distance/tests/test_permdisp.py::testPERMDISP::test_confirm_betadispr_results 567s /usr/lib/python3/dist-packages/skbio/stats/ordination/_principal_coordinate_analysis.py:146: RuntimeWarning: The result contains negative eigenvalues. Please compare their magnitude with the magnitude of some of the largest positive eigenvalues. If the negative ones are smaller, it's probably safe to ignore them, but if they are large in magnitude, the results won't be useful. See the Notes section for more details. The smallest eigenvalue is -0.007758325147780542 and the largest is 2.7077929489469237. 567s warn( 567s 567s stats/ordination/tests/test_redundancy_analysis.py::TestRDAErrors::test_shape 567s /usr/lib/python3.13/unittest/case.py:707: DeprecationWarning: It is deprecated to return a value that is not None from a test case (>) 567s return self.run(*args, **kwds) 567s 567s stats/tests/test_composition.py::CompositionTests::test_multiplicative_replacement 567s /usr/lib/python3/dist-packages/skbio/util/_warning.py:60: UserWarning: multiplicative_replacement is deprecated as of 0.6.0. 567s warn(f"{func.__name__} is deprecated as of {ver}.") 567s 567s stats/tests/test_composition.py::AncomTests::test_ancom_alternative_test 567s /usr/lib/python3/dist-packages/scipy/stats/_axis_nan_policy.py:586: RuntimeWarning: Precision loss occurred in moment calculation due to catastrophic cancellation. This occurs when the data are nearly identical. Results may be unreliable. 567s res = hypotest_fun_out(*samples, **kwds) 567s 567s stats/tests/test_composition.py::AncomTests::test_ancom_fail_multiple_groups 567s /usr/lib/python3/dist-packages/skbio/stats/composition.py:1628: DeprecationWarning: You are passing as positional arguments: axis. Please change your invocation to use keyword arguments. From SciPy 1.17.0, passing these as positional arguments will result in an error. 567s return test(*[x[cats == k] for k in cs]) 567s 567s stats/tests/test_composition.py::AncomTests::test_ancom_multiple_comparisons_deprecated 567s /usr/lib/python3/dist-packages/skbio/util/_warning.py:60: UserWarning: ancom is deprecated as of 0.6.0. 567s warn(f"{func.__name__} is deprecated as of {ver}.") 567s 567s stats/tests/test_composition.py::AncomTests::test_ancom_no_signal 567s /usr/lib/python3/dist-packages/scipy/stats/_axis_nan_policy.py:586: ConstantInputWarning: Each of the input arrays is constant; the F statistic is not defined or infinite 567s res = hypotest_fun_out(*samples, **kwds) 567s 567s stats/tests/test_composition.py::VLRTests::test_pairwise_vlr 567s /usr/lib/python3/dist-packages/skbio/stats/composition.py:947: RuntimeWarning: divide by zero encountered in log 567s X_log = np.log(mat) 567s 567s stats/tests/test_composition.py::VLRTests::test_pairwise_vlr 567s /usr/lib/python3/dist-packages/numpy/lib/_function_base_impl.py:2888: RuntimeWarning: invalid value encountered in subtract 567s X -= avg[:, None] 567s 567s stats/tests/test_composition.py::VLRTests::test_vlr 567s /usr/lib/python3/dist-packages/skbio/stats/composition.py:831: RuntimeWarning: divide by zero encountered in log 567s x = np.log(x) 567s 567s stats/tests/test_composition.py::VLRTests::test_vlr 567s /usr/lib/python3/dist-packages/numpy/_core/_methods.py:191: RuntimeWarning: invalid value encountered in subtract 567s x = asanyarray(arr - arrmean) 567s 567s stats/tests/test_gradient.py::GradientTests::test_weight_by_vector 567s /usr/lib/python3/dist-packages/skbio/stats/gradient.py:167: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise an error in a future version of pandas. Value '6.357142857142857' has dtype incompatible with int64, please explicitly cast to a compatible dtype first. 567s trajectories.loc[idx] = ( 567s 567s tree/tests/test_tree.py::TreeTests::test_root_at 567s /usr/lib/python3/dist-packages/skbio/tree/_tree.py:1327: FutureWarning: The default behavior of `root_at` is subject to change in 0.7.0. The new default behavior can be achieved by specifying `reset=True, branch_attrs=[], root_name=None`. 567s warn( 567s 567s tree/tests/test_tree.py::TreeTests::test_root_at 567s /usr/lib/python3/dist-packages/skbio/tree/_tree.py:776: FutureWarning: The default behavior of `unrooted_copy` is subject to change in 0.7.0. The new default behavior can be achieved by specifying `branch_attrs={"length", "support"}, root_name=None`. 567s warn( 567s 567s tree/tests/test_tree.py::TreeTests::test_root_at_midpoint 567s /usr/lib/python3/dist-packages/skbio/tree/_tree.py:1472: FutureWarning: The default behavior of `root_at_midpoint` is subject to change in 0.7.0. The new default behavior can be achieved by specifying `reset=True, branch_attrs=[], root_name=None`. 567s warn( 567s 567s tree/tests/test_tree.py::TreeTests::test_unrooted_deepcopy 567s /usr/lib/python3/dist-packages/skbio/util/_warning.py:56: DeprecationWarning: unrooted_deepcopy is deprecated as of 0.6.2. Use unrooted_copy instead. 567s warn( 567s 567s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 567s ========== 2763 passed, 30 skipped, 107 warnings in 209.52s (0:03:29) ========== 568s pybuild-autopkgtest: error: pybuild --autopkgtest --test-pytest -i python{version} -p "3.14 3.13" returned exit code 13 568s make: *** [/tmp/oxPeNDcsv3/run:4: pybuild-autopkgtest] Error 25 568s pybuild-autopkgtest: error: /tmp/oxPeNDcsv3/run pybuild-autopkgtest returned exit code 2 568s autopkgtest [12:37:38]: test pybuild-autopkgtest: -----------------------] 569s autopkgtest [12:37:39]: test pybuild-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 569s pybuild-autopkgtest FAIL non-zero exit status 25 569s autopkgtest [12:37:39]: @@@@@@@@@@@@@@@@@@@@ summary 569s pybuild-autopkgtest FAIL non-zero exit status 25