0s autopkgtest [23:16:37]: starting date and time: 2026-02-03 23:16:37+0000 0s autopkgtest [23:16:37]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [23:16:37]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.urht0alq/out --timeout-copy=6000 --needs-internet=try --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:setuptools --apt-upgrade python-pyani --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=setuptools/78.1.1-0.1build1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-arm64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@sto01-arm64-8.secgroup --name adt-resolute-arm64-python-pyani-20260203-231637-juju-7f2275-prod-proposed-migration-environment-2-a0c34906-37b5-41ba-abcb-a371f4a3d558 --image adt/ubuntu-resolute-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-autopkgtest-workers-arm64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 4s Creating nova instance adt-resolute-arm64-python-pyani-20260203-231637-juju-7f2275-prod-proposed-migration-environment-2-a0c34906-37b5-41ba-abcb-a371f4a3d558 from image adt/ubuntu-resolute-arm64-server-20260203.img (UUID fd4bac28-a946-4216-8755-72db0faf84da)... 61s autopkgtest [23:17:38]: testbed dpkg architecture: arm64 61s autopkgtest [23:17:38]: testbed apt version: 3.1.14 62s autopkgtest [23:17:39]: @@@@@@@@@@@@@@@@@@@@ test bed setup 62s autopkgtest [23:17:39]: testbed release detected to be: None 63s autopkgtest [23:17:40]: updating testbed package index (apt update) 63s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 63s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 63s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 63s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 63s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [232 kB] 63s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [27.9 kB] 63s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [5260 B] 63s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1337 kB] 64s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 Packages [293 kB] 64s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 c-n-f Metadata [7048 B] 64s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 Packages [52.9 kB] 64s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 c-n-f Metadata [328 B] 64s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 Packages [1188 kB] 64s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 c-n-f Metadata [31.5 kB] 64s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 Packages [21.5 kB] 64s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 c-n-f Metadata [744 B] 67s Fetched 3322 kB in 1s (2282 kB/s) 68s Reading package lists... 69s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 69s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 69s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 69s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 70s Reading package lists... 70s Reading package lists... 70s Building dependency tree... 70s Reading state information... 70s Calculating upgrade... 71s The following packages will be upgraded: 71s firmware-sof-signed libzstd1 mtd-utils powermgmt-base python3-pkg-resources 71s python3-setuptools zstd 71s 7 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 71s Need to get 3849 kB of archives. 71s After this operation, 2048 B of additional disk space will be used. 71s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 firmware-sof-signed all 2025.05.1-1build1 [1696 kB] 72s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 libzstd1 arm64 1.5.7+dfsg-3 [277 kB] 72s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 powermgmt-base all 1.38ubuntu2 [7878 B] 72s Get:4 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 python3-pkg-resources all 78.1.1-0.1build1 [144 kB] 72s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 python3-setuptools all 78.1.1-0.1build1 [661 kB] 73s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 zstd arm64 1.5.7+dfsg-3 [596 kB] 74s Get:7 http://ftpmaster.internal/ubuntu resolute/main arm64 mtd-utils arm64 1:2.3.0-1ubuntu2 [466 kB] 74s dpkg-preconfigure: unable to re-open stdin: No such file or directory 74s Fetched 3849 kB in 3s (1341 kB/s) 75s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 89360 files and directories currently installed.) 75s Preparing to unpack .../firmware-sof-signed_2025.05.1-1build1_all.deb ... 75s Unpacking firmware-sof-signed (2025.05.1-1build1) over (2025.05.1-1) ... 75s Preparing to unpack .../libzstd1_1.5.7+dfsg-3_arm64.deb ... 75s Unpacking libzstd1:arm64 (1.5.7+dfsg-3) over (1.5.7+dfsg-2) ... 75s Setting up libzstd1:arm64 (1.5.7+dfsg-3) ... 75s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 89360 files and directories currently installed.) 75s Preparing to unpack .../powermgmt-base_1.38ubuntu2_all.deb ... 75s Unpacking powermgmt-base (1.38ubuntu2) over (1.38ubuntu1) ... 76s Preparing to unpack .../python3-pkg-resources_78.1.1-0.1build1_all.deb ... 76s Unpacking python3-pkg-resources (78.1.1-0.1build1) over (78.1.1-0.1) ... 76s Preparing to unpack .../python3-setuptools_78.1.1-0.1build1_all.deb ... 76s Unpacking python3-setuptools (78.1.1-0.1build1) over (78.1.1-0.1) ... 76s Preparing to unpack .../zstd_1.5.7+dfsg-3_arm64.deb ... 76s Unpacking zstd (1.5.7+dfsg-3) over (1.5.7+dfsg-2) ... 76s Preparing to unpack .../mtd-utils_1%3a2.3.0-1ubuntu2_arm64.deb ... 76s Unpacking mtd-utils (1:2.3.0-1ubuntu2) over (1:2.3.0-1ubuntu1) ... 77s Setting up python3-pkg-resources (78.1.1-0.1build1) ... 77s Setting up powermgmt-base (1.38ubuntu2) ... 77s Setting up python3-setuptools (78.1.1-0.1build1) ... 78s Setting up firmware-sof-signed (2025.05.1-1build1) ... 78s Setting up mtd-utils (1:2.3.0-1ubuntu2) ... 78s Setting up zstd (1.5.7+dfsg-3) ... 78s Processing triggers for man-db (2.13.1-1) ... 80s Processing triggers for libc-bin (2.42-2ubuntu4) ... 80s autopkgtest [23:17:57]: upgrading testbed (apt dist-upgrade and autopurge) 80s Reading package lists... 80s Building dependency tree... 80s Reading state information... 80s Calculating upgrade... 81s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 81s Reading package lists... 81s Building dependency tree... 81s Reading state information... 81s Solving dependencies... 82s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 84s autopkgtest [23:18:01]: testbed running kernel: Linux 6.18.0-9-generic #9-Ubuntu SMP PREEMPT_DYNAMIC Mon Jan 12 16:41:39 UTC 2026 84s autopkgtest [23:18:01]: @@@@@@@@@@@@@@@@@@@@ apt-source python-pyani 90s Get:1 http://ftpmaster.internal/ubuntu resolute/universe python-pyani 0.2.13-1 (dsc) [1798 B] 90s Get:2 http://ftpmaster.internal/ubuntu resolute/universe python-pyani 0.2.13-1 (tar) [49.0 MB] 90s Get:3 http://ftpmaster.internal/ubuntu resolute/universe python-pyani 0.2.13-1 (diff) [11.2 kB] 91s gpgv: Signature made Tue Mar 18 07:26:50 2025 UTC 91s gpgv: using EDDSA key A095B66EE09024BEE6A2F0722A27904BD7243EDA 91s gpgv: issuer "nilesh@debian.org" 91s gpgv: Can't check signature: No public key 91s dpkg-source: warning: cannot verify inline signature for ./python-pyani_0.2.13-1.dsc: no acceptable signature found 92s autopkgtest [23:18:09]: testing package python-pyani version 0.2.13-1 93s autopkgtest [23:18:10]: build not needed 101s autopkgtest [23:18:18]: test run-unit-test: preparing testbed 101s Reading package lists... 101s Building dependency tree... 101s Reading state information... 101s Solving dependencies... 102s The following NEW packages will be installed: 102s fontconfig-config fonts-dejavu-core fonts-dejavu-extra fonts-dejavu-mono 102s fonts-lyx fonts-urw-base35 libblas3 libcairo2 libdeflate0 libfontconfig1 102s libfontenc1 libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 102s libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 liblapack3 liblcms2-2 102s liblerc4 libmbedcrypto16 libmbedtls21 libmbedx509-7 libncbi-vdb3 102s libopenjp2-7 libpixman-1-0 libpython3.14-minimal libpython3.14-stdlib 102s libqhull-r8.0 libraqm0 libsharpyuv0 libtcl8.6 libtiff6 libtk8.6 libwebp7 102s libwebpdemux2 libwebpmux3 libxcb-render0 libxcb-shm0 libxft2 libxrender1 102s libxslt1.1 libxss1 libzopfli1 mummer ncbi-blast+ ncbi-data ncbi-vdb-data 102s python-matplotlib-data python3-all python3-biopython python3-brotli 102s python3-cairo python3-charset-normalizer python3-contourpy python3-cycler 102s python3-decorator python3-fonttools python3-freetype python3-iniconfig 102s python3-kiwisolver python3-lxml python3-lz4 python3-matplotlib 102s python3-mpmath python3-numpy python3-numpy-dev python3-pandas 102s python3-pandas-lib python3-pil python3-pil.imagetk python3-pluggy 102s python3-pyani python3-pytest python3-pytz python3-reportlab 102s python3-rlpycairo python3-scipy python3-seaborn python3-sympy python3-tk 102s python3-ufolib2 python3-zopfli python3.13-tk python3.14 python3.14-minimal 102s python3.14-tk sgml-base unicode-data w3c-sgml-lib x11-common 102s xfonts-encodings xfonts-utils xml-core 102s 0 upgraded, 96 newly installed, 0 to remove and 0 not upgraded. 102s Need to get 127 MB of archives. 102s After this operation, 567 MB of additional disk space will be used. 102s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-numpy-dev arm64 1:2.3.5+ds-3 [366 kB] 102s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 libblas3 arm64 3.12.1-7ubuntu1 [181 kB] 102s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 libgfortran5 arm64 15.2.0-12ubuntu1 [451 kB] 102s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 liblapack3 arm64 3.12.1-7ubuntu1 [2299 kB] 102s Get:5 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-numpy arm64 1:2.3.5+ds-3 [4569 kB] 103s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 libpython3.14-minimal arm64 3.14.2-1 [917 kB] 103s Get:7 http://ftpmaster.internal/ubuntu resolute/main arm64 python3.14-minimal arm64 3.14.2-1 [2548 kB] 103s Get:8 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-mono all 2.37-8build1 [502 kB] 103s Get:9 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-core all 2.37-8build1 [834 kB] 103s Get:10 http://ftpmaster.internal/ubuntu resolute/main arm64 libfontenc1 arm64 1:1.1.8-1build2 [13.9 kB] 103s Get:11 http://ftpmaster.internal/ubuntu resolute/main arm64 x11-common all 1:7.7+24ubuntu1 [22.4 kB] 103s Get:12 http://ftpmaster.internal/ubuntu resolute/main arm64 xfonts-encodings all 1:1.0.5-0ubuntu3 [576 kB] 103s Get:13 http://ftpmaster.internal/ubuntu resolute/main arm64 xfonts-utils arm64 1:7.7+7build1 [94.8 kB] 103s Get:14 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-urw-base35 all 20200910-8build1 [10.9 MB] 103s Get:15 http://ftpmaster.internal/ubuntu resolute/main arm64 fontconfig-config arm64 2.17.1-3ubuntu1 [38.5 kB] 103s Get:16 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-extra all 2.37-8build1 [1944 kB] 104s Get:17 http://ftpmaster.internal/ubuntu resolute/universe arm64 fonts-lyx all 2.5.0~RC2-3 [171 kB] 104s Get:18 http://ftpmaster.internal/ubuntu resolute/main arm64 libfontconfig1 arm64 2.17.1-3ubuntu1 [144 kB] 104s Get:19 http://ftpmaster.internal/ubuntu resolute/main arm64 libpixman-1-0 arm64 0.46.4-1 [204 kB] 104s Get:20 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-render0 arm64 1.17.0-2ubuntu1 [16.4 kB] 104s Get:21 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-shm0 arm64 1.17.0-2ubuntu1 [5938 B] 104s Get:22 http://ftpmaster.internal/ubuntu resolute/main arm64 libxrender1 arm64 1:0.9.12-1 [19.5 kB] 104s Get:23 http://ftpmaster.internal/ubuntu resolute/main arm64 libcairo2 arm64 1.18.4-3 [556 kB] 104s Get:24 http://ftpmaster.internal/ubuntu resolute/main arm64 libdeflate0 arm64 1.23-2 [46.4 kB] 104s Get:25 http://ftpmaster.internal/ubuntu resolute/main arm64 libgomp1 arm64 15.2.0-12ubuntu1 [147 kB] 104s Get:26 http://ftpmaster.internal/ubuntu resolute/main arm64 libgraphite2-3 arm64 1.3.14-11ubuntu1 [72.1 kB] 104s Get:27 http://ftpmaster.internal/ubuntu resolute/main arm64 libharfbuzz0b arm64 12.3.2-1 [510 kB] 104s Get:28 http://ftpmaster.internal/ubuntu resolute/main arm64 libimagequant0 arm64 2.18.0-1build1 [37.1 kB] 104s Get:29 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg-turbo8 arm64 2.1.5-4ubuntu2 [165 kB] 104s Get:30 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 104s Get:31 http://ftpmaster.internal/ubuntu resolute/main arm64 liblcms2-2 arm64 2.17-1 [170 kB] 104s Get:32 http://ftpmaster.internal/ubuntu resolute/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu2 [174 kB] 104s Get:33 http://ftpmaster.internal/ubuntu resolute/universe arm64 libmbedcrypto16 arm64 3.6.5-0.1ubuntu2 [256 kB] 104s Get:34 http://ftpmaster.internal/ubuntu resolute/universe arm64 libmbedx509-7 arm64 3.6.5-0.1ubuntu2 [35.3 kB] 104s Get:35 http://ftpmaster.internal/ubuntu resolute/universe arm64 libmbedtls21 arm64 3.6.5-0.1ubuntu2 [126 kB] 104s Get:36 http://ftpmaster.internal/ubuntu resolute/universe arm64 ncbi-vdb-data all 3.2.1+dfsg-2build1 [81.4 kB] 104s Get:37 http://ftpmaster.internal/ubuntu resolute/universe arm64 libncbi-vdb3 arm64 3.2.1+dfsg-2build1 [1240 kB] 104s Get:38 http://ftpmaster.internal/ubuntu resolute/main arm64 libpython3.14-stdlib arm64 3.14.2-1 [2351 kB] 104s Get:39 http://ftpmaster.internal/ubuntu resolute/universe arm64 libqhull-r8.0 arm64 2020.2-8 [191 kB] 104s Get:40 http://ftpmaster.internal/ubuntu resolute/main arm64 libraqm0 arm64 0.10.3-1 [15.0 kB] 104s Get:41 http://ftpmaster.internal/ubuntu resolute/main arm64 libsharpyuv0 arm64 1.5.0-0.1build1 [16.7 kB] 104s Get:42 http://ftpmaster.internal/ubuntu resolute/main arm64 libtcl8.6 arm64 8.6.17+dfsg-1build1 [983 kB] 104s Get:43 http://ftpmaster.internal/ubuntu resolute/main arm64 libjbig0 arm64 2.1-6.1ubuntu3 [29.2 kB] 104s Get:44 http://ftpmaster.internal/ubuntu resolute/main arm64 libwebp7 arm64 1.5.0-0.1build1 [205 kB] 104s Get:45 http://ftpmaster.internal/ubuntu resolute/main arm64 libtiff6 arm64 4.7.0-3ubuntu3 [196 kB] 104s Get:46 http://ftpmaster.internal/ubuntu resolute/main arm64 libxft2 arm64 2.3.6-1build2 [43.2 kB] 104s Get:47 http://ftpmaster.internal/ubuntu resolute/main arm64 libxss1 arm64 1:1.2.3-1build4 [7102 B] 104s Get:48 http://ftpmaster.internal/ubuntu resolute/main arm64 libtk8.6 arm64 8.6.17-1 [811 kB] 104s Get:49 http://ftpmaster.internal/ubuntu resolute/main arm64 libwebpdemux2 arm64 1.5.0-0.1build1 [12.5 kB] 104s Get:50 http://ftpmaster.internal/ubuntu resolute/main arm64 libwebpmux3 arm64 1.5.0-0.1build1 [25.2 kB] 104s Get:51 http://ftpmaster.internal/ubuntu resolute/main arm64 libxslt1.1 arm64 1.1.43-0.3 [172 kB] 104s Get:52 http://ftpmaster.internal/ubuntu resolute/universe arm64 libzopfli1 arm64 1.0.3-3build1 [106 kB] 104s Get:53 http://ftpmaster.internal/ubuntu resolute/universe arm64 mummer arm64 3.23+dfsg-8build1 [678 kB] 104s Get:54 http://ftpmaster.internal/ubuntu resolute/universe arm64 ncbi-data all 6.1.20170106+dfsg2-7 [3969 kB] 104s Get:55 http://ftpmaster.internal/ubuntu resolute/universe arm64 ncbi-blast+ arm64 2.16.0+ds-7 [15.4 MB] 105s Get:56 http://ftpmaster.internal/ubuntu resolute/universe arm64 python-matplotlib-data all 3.10.7+dfsg1-1 [2930 kB] 105s Get:57 http://ftpmaster.internal/ubuntu resolute/main arm64 python3.14 arm64 3.14.2-1 [816 kB] 105s Get:58 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-all arm64 3.13.9-3 [890 B] 105s Get:59 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-charset-normalizer arm64 3.4.4-2 [169 kB] 105s Get:60 http://ftpmaster.internal/ubuntu resolute/main arm64 python3.13-tk arm64 3.13.11-1 [106 kB] 105s Get:61 http://ftpmaster.internal/ubuntu resolute/main arm64 python3.14-tk arm64 3.14.2-1 [108 kB] 105s Get:62 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-tk arm64 3.13.9-3 [11.2 kB] 105s Get:63 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pil.imagetk arm64 12.0.0-1ubuntu1 [9532 B] 105s Get:64 http://ftpmaster.internal/ubuntu resolute/main arm64 libopenjp2-7 arm64 2.5.4-1 [180 kB] 105s Get:65 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-pil arm64 12.0.0-1ubuntu1 [486 kB] 105s Get:66 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-cairo arm64 1.27.0-2build1 [141 kB] 105s Get:67 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-freetype all 2.5.1-2 [92.2 kB] 105s Get:68 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-rlpycairo all 0.3.0-4 [9332 B] 105s Get:69 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-reportlab all 4.4.9-1 [1149 kB] 105s Get:70 http://ftpmaster.internal/ubuntu resolute/main arm64 sgml-base all 1.31+nmu1 [11.0 kB] 105s Get:71 http://ftpmaster.internal/ubuntu resolute/main arm64 xml-core all 0.19build1 [20.3 kB] 105s Get:72 http://ftpmaster.internal/ubuntu resolute/universe arm64 w3c-sgml-lib all 1.3-3build1 [278 kB] 105s Get:73 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-biopython arm64 1.86+dfsg-1 [1675 kB] 105s Get:74 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-brotli arm64 1.1.0-2build6 [343 kB] 105s Get:75 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-contourpy arm64 1.3.3-1 [245 kB] 105s Get:76 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-cycler all 0.12.1-2 [9850 B] 105s Get:77 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-decorator all 5.2.1-2 [28.1 kB] 105s Get:78 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-lxml arm64 6.0.2-1 [2155 kB] 105s Get:79 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-lz4 arm64 4.4.5+dfsg-1 [27.9 kB] 105s Get:80 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-scipy arm64 1.16.3-4 [17.5 MB] 105s Get:81 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-mpmath all 1.3.0-2 [423 kB] 105s Get:82 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-sympy all 1.14.0-2 [4306 kB] 105s Get:83 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-ufolib2 all 0.18.1+dfsg1-1 [33.7 kB] 105s Get:84 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-zopfli arm64 0.4.0-1 [10.8 kB] 105s Get:85 http://ftpmaster.internal/ubuntu resolute/universe arm64 unicode-data all 16.0.0-1build1 [9543 kB] 106s Get:86 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-fonttools arm64 4.61.1-3 [1680 kB] 106s Get:87 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-iniconfig all 2.1.0-2 [6962 B] 106s Get:88 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-kiwisolver arm64 1.4.10~rc0-1 [60.1 kB] 106s Get:89 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-matplotlib arm64 3.10.7+dfsg1-1 [17.1 MB] 106s Get:90 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pytz all 2025.2-5 [32.4 kB] 106s Get:91 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pandas-lib arm64 2.3.3+dfsg-3 [6290 kB] 106s Get:92 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pandas all 2.3.3+dfsg-3 [2948 kB] 106s Get:93 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pluggy all 1.6.0-2 [21.1 kB] 106s Get:94 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-seaborn all 0.13.2-6 [225 kB] 106s Get:95 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pyani arm64 0.2.13-1 [46.7 kB] 106s Get:96 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pytest all 9.0.2-2 [277 kB] 107s Fetched 127 MB in 5s (27.8 MB/s) 107s Selecting previously unselected package python3-numpy-dev:arm64. 107s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 89360 files and directories currently installed.) 107s Preparing to unpack .../00-python3-numpy-dev_1%3a2.3.5+ds-3_arm64.deb ... 107s Unpacking python3-numpy-dev:arm64 (1:2.3.5+ds-3) ... 107s Selecting previously unselected package libblas3:arm64. 107s Preparing to unpack .../01-libblas3_3.12.1-7ubuntu1_arm64.deb ... 107s Unpacking libblas3:arm64 (3.12.1-7ubuntu1) ... 107s Selecting previously unselected package libgfortran5:arm64. 107s Preparing to unpack .../02-libgfortran5_15.2.0-12ubuntu1_arm64.deb ... 107s Unpacking libgfortran5:arm64 (15.2.0-12ubuntu1) ... 107s Selecting previously unselected package liblapack3:arm64. 107s Preparing to unpack .../03-liblapack3_3.12.1-7ubuntu1_arm64.deb ... 107s Unpacking liblapack3:arm64 (3.12.1-7ubuntu1) ... 107s Selecting previously unselected package python3-numpy. 107s Preparing to unpack .../04-python3-numpy_1%3a2.3.5+ds-3_arm64.deb ... 107s Unpacking python3-numpy (1:2.3.5+ds-3) ... 107s Selecting previously unselected package libpython3.14-minimal:arm64. 107s Preparing to unpack .../05-libpython3.14-minimal_3.14.2-1_arm64.deb ... 107s Unpacking libpython3.14-minimal:arm64 (3.14.2-1) ... 107s Selecting previously unselected package python3.14-minimal. 107s Preparing to unpack .../06-python3.14-minimal_3.14.2-1_arm64.deb ... 107s Unpacking python3.14-minimal (3.14.2-1) ... 108s Selecting previously unselected package fonts-dejavu-mono. 108s Preparing to unpack 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108s Unpacking xfonts-utils (1:7.7+7build1) ... 108s Selecting previously unselected package fonts-urw-base35. 108s Preparing to unpack .../13-fonts-urw-base35_20200910-8build1_all.deb ... 108s Unpacking fonts-urw-base35 (20200910-8build1) ... 108s Selecting previously unselected package fontconfig-config. 108s Preparing to unpack .../14-fontconfig-config_2.17.1-3ubuntu1_arm64.deb ... 108s Unpacking fontconfig-config (2.17.1-3ubuntu1) ... 108s Selecting previously unselected package fonts-dejavu-extra. 108s Preparing to unpack .../15-fonts-dejavu-extra_2.37-8build1_all.deb ... 108s Unpacking fonts-dejavu-extra (2.37-8build1) ... 108s Selecting previously unselected package fonts-lyx. 108s Preparing to unpack .../16-fonts-lyx_2.5.0~RC2-3_all.deb ... 108s Unpacking fonts-lyx (2.5.0~RC2-3) ... 108s Selecting previously unselected package libfontconfig1:arm64. 108s Preparing to unpack .../17-libfontconfig1_2.17.1-3ubuntu1_arm64.deb ... 108s Unpacking libfontconfig1:arm64 (2.17.1-3ubuntu1) ... 109s Selecting previously unselected package libpixman-1-0:arm64. 109s Preparing to unpack .../18-libpixman-1-0_0.46.4-1_arm64.deb ... 109s Unpacking libpixman-1-0:arm64 (0.46.4-1) ... 109s Selecting previously unselected package libxcb-render0:arm64. 109s Preparing to unpack .../19-libxcb-render0_1.17.0-2ubuntu1_arm64.deb ... 109s Unpacking libxcb-render0:arm64 (1.17.0-2ubuntu1) ... 109s Selecting previously unselected package libxcb-shm0:arm64. 109s Preparing to unpack .../20-libxcb-shm0_1.17.0-2ubuntu1_arm64.deb ... 109s Unpacking libxcb-shm0:arm64 (1.17.0-2ubuntu1) ... 109s Selecting previously unselected package libxrender1:arm64. 109s Preparing to unpack .../21-libxrender1_1%3a0.9.12-1_arm64.deb ... 109s Unpacking libxrender1:arm64 (1:0.9.12-1) ... 109s Selecting previously unselected package libcairo2:arm64. 109s Preparing to unpack .../22-libcairo2_1.18.4-3_arm64.deb ... 109s Unpacking libcairo2:arm64 (1.18.4-3) ... 109s Selecting previously unselected package libdeflate0:arm64. 109s Preparing to unpack .../23-libdeflate0_1.23-2_arm64.deb ... 109s Unpacking libdeflate0:arm64 (1.23-2) ... 109s Selecting previously unselected package libgomp1:arm64. 109s Preparing to unpack .../24-libgomp1_15.2.0-12ubuntu1_arm64.deb ... 109s Unpacking libgomp1:arm64 (15.2.0-12ubuntu1) ... 109s Selecting previously unselected package libgraphite2-3:arm64. 109s Preparing to unpack .../25-libgraphite2-3_1.3.14-11ubuntu1_arm64.deb ... 109s Unpacking libgraphite2-3:arm64 (1.3.14-11ubuntu1) ... 109s Selecting previously unselected package libharfbuzz0b:arm64. 109s Preparing to unpack .../26-libharfbuzz0b_12.3.2-1_arm64.deb ... 109s Unpacking libharfbuzz0b:arm64 (12.3.2-1) ... 109s Selecting previously unselected package libimagequant0:arm64. 109s Preparing to unpack .../27-libimagequant0_2.18.0-1build1_arm64.deb ... 109s Unpacking libimagequant0:arm64 (2.18.0-1build1) ... 109s Selecting previously unselected package libjpeg-turbo8:arm64. 109s Preparing to unpack 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package libtiff6:arm64. 110s Preparing to unpack .../44-libtiff6_4.7.0-3ubuntu3_arm64.deb ... 110s Unpacking libtiff6:arm64 (4.7.0-3ubuntu3) ... 110s Selecting previously unselected package libxft2:arm64. 110s Preparing to unpack .../45-libxft2_2.3.6-1build2_arm64.deb ... 110s Unpacking libxft2:arm64 (2.3.6-1build2) ... 110s Selecting previously unselected package libxss1:arm64. 110s Preparing to unpack .../46-libxss1_1%3a1.2.3-1build4_arm64.deb ... 110s Unpacking libxss1:arm64 (1:1.2.3-1build4) ... 110s Selecting previously unselected package libtk8.6:arm64. 110s Preparing to unpack .../47-libtk8.6_8.6.17-1_arm64.deb ... 110s Unpacking libtk8.6:arm64 (8.6.17-1) ... 110s Selecting previously unselected package libwebpdemux2:arm64. 110s Preparing to unpack .../48-libwebpdemux2_1.5.0-0.1build1_arm64.deb ... 110s Unpacking libwebpdemux2:arm64 (1.5.0-0.1build1) ... 110s Selecting previously unselected package libwebpmux3:arm64. 110s Preparing to unpack .../49-libwebpmux3_1.5.0-0.1build1_arm64.deb ... 110s Unpacking libwebpmux3:arm64 (1.5.0-0.1build1) ... 110s Selecting previously unselected package libxslt1.1:arm64. 110s Preparing to unpack .../50-libxslt1.1_1.1.43-0.3_arm64.deb ... 110s Unpacking libxslt1.1:arm64 (1.1.43-0.3) ... 110s Selecting previously unselected package libzopfli1. 110s Preparing to unpack .../51-libzopfli1_1.0.3-3build1_arm64.deb ... 110s Unpacking libzopfli1 (1.0.3-3build1) ... 110s Selecting previously unselected package mummer. 110s Preparing to unpack .../52-mummer_3.23+dfsg-8build1_arm64.deb ... 110s Unpacking mummer (3.23+dfsg-8build1) ... 110s Selecting previously unselected package ncbi-data. 110s Preparing to unpack .../53-ncbi-data_6.1.20170106+dfsg2-7_all.deb ... 110s Unpacking ncbi-data (6.1.20170106+dfsg2-7) ... 110s Selecting previously unselected package ncbi-blast+. 110s Preparing to unpack .../54-ncbi-blast+_2.16.0+ds-7_arm64.deb ... 110s Unpacking ncbi-blast+ (2.16.0+ds-7) ... 110s Selecting previously unselected package python-matplotlib-data. 111s Preparing to unpack .../55-python-matplotlib-data_3.10.7+dfsg1-1_all.deb ... 111s Unpacking python-matplotlib-data (3.10.7+dfsg1-1) ... 111s Selecting previously unselected package python3.14. 111s Preparing to unpack .../56-python3.14_3.14.2-1_arm64.deb ... 111s Unpacking python3.14 (3.14.2-1) ... 111s Selecting previously unselected package python3-all. 111s Preparing to unpack .../57-python3-all_3.13.9-3_arm64.deb ... 111s Unpacking python3-all (3.13.9-3) ... 111s Selecting previously unselected package python3-charset-normalizer. 111s Preparing to unpack .../58-python3-charset-normalizer_3.4.4-2_arm64.deb ... 111s Unpacking python3-charset-normalizer (3.4.4-2) ... 111s Selecting previously unselected package python3.13-tk. 111s Preparing to unpack .../59-python3.13-tk_3.13.11-1_arm64.deb ... 111s Unpacking python3.13-tk (3.13.11-1) ... 111s Selecting previously unselected package python3.14-tk. 111s Preparing to unpack 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... 117s Setting up sgml-base (1.31+nmu1) ... 117s Setting up libxss1:arm64 (1:1.2.3-1build4) ... 117s Setting up libmbedcrypto16:arm64 (3.6.5-0.1ubuntu2) ... 117s Setting up python3-mpmath (1.3.0-2) ... 118s Setting up python-matplotlib-data (3.10.7+dfsg1-1) ... 118s Setting up libwebpmux3:arm64 (1.5.0-0.1build1) ... 118s Setting up python3.14-minimal (3.14.2-1) ... 119s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 119s Setting up python3-sympy (1.14.0-2) ... 131s /usr/lib/python3/dist-packages/sympy/testing/runtests.py:283: SyntaxWarning: 'return' in a 'finally' block 131s return p.returncode 132s Setting up liblapack3:arm64 (3.12.1-7ubuntu1) ... 132s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 132s Setting up libpython3.14-stdlib:arm64 (3.14.2-1) ... 132s Setting up fontconfig-config (2.17.1-3ubuntu1) ... 132s Setting up python3-pytest (9.0.2-2) ... 133s Setting up libwebpdemux2:arm64 (1.5.0-0.1build1) ... 133s Setting up xfonts-utils (1:7.7+7build1) ... 133s Setting up python3-zopfli (0.4.0-1) ... 133s Setting up libmbedx509-7:arm64 (3.6.5-0.1ubuntu2) ... 133s Setting up libraqm0:arm64 (0.10.3-1) ... 133s Setting up python3-numpy (1:2.3.5+ds-3) ... 137s Setting up libmbedtls21:arm64 (3.6.5-0.1ubuntu2) ... 137s Setting up python3-lxml:arm64 (6.0.2-1) ... 137s Setting up libtiff6:arm64 (4.7.0-3ubuntu3) ... 137s Setting up xml-core (0.19build1) ... 137s Setting up python3-contourpy (1.3.3-1) ... 137s Setting up libfontconfig1:arm64 (2.17.1-3ubuntu1) ... 137s Setting up python3.14 (3.14.2-1) ... 138s Setting up libxft2:arm64 (2.3.6-1build2) ... 138s Setting up python3-scipy (1.16.3-4) ... 146s Setting up libtk8.6:arm64 (8.6.17-1) ... 146s Setting up python3-pandas-lib:arm64 (2.3.3+dfsg-3) ... 146s Setting up libncbi-vdb3:arm64 (3.2.1+dfsg-2build1) ... 146s Setting up python3-all (3.13.9-3) ... 146s Setting up fonts-urw-base35 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Setting up w3c-sgml-lib (1.3-3build1) ... 190s Setting up python3-biopython (1.86+dfsg-1) ... 192s Setting up python3-pyani (0.2.13-1) ... 193s autopkgtest [23:19:50]: test run-unit-test: [----------------------- 194s Testing with python3.14 in /tmp/autopkgtest.pFIC2K/build.cpA/src: 194s ============================= test session starts ============================== 194s platform linux -- Python 3.13.11, pytest-9.0.2, pluggy-1.6.0 -- /usr/bin/python3 194s cachedir: .pytest_cache 194s rootdir: /tmp/autopkgtest.pFIC2K/build.cpA/src 194s plugins: typeguard-4.4.4 196s collecting ... collected 56 items 196s 196s tests/test_anib.py::TestBLASTCmdline::test_blastall_dbjobdict SKIPPED [ 1%] 196s tests/test_anib.py::TestBLASTCmdline::test_blastall_generation SKIPPED [ 3%] 196s tests/test_anib.py::TestBLASTCmdline::test_blastall_graph SKIPPED (l...) [ 5%] 196s tests/test_anib.py::TestBLASTCmdline::test_blastdb_commands PASSED [ 7%] 196s tests/test_anib.py::TestBLASTCmdline::test_blastn_commands PASSED [ 8%] 196s tests/test_anib.py::TestBLASTCmdline::test_blastn_dbjobdict PASSED [ 10%] 196s tests/test_anib.py::TestBLASTCmdline::test_blastn_generation PASSED [ 12%] 198s tests/test_anib.py::TestBLASTCmdline::test_blastn_graph PASSED [ 14%] 198s tests/test_anib.py::TestBLASTCmdline::test_formatdb_generation SKIPPED [ 16%] 198s tests/test_anib.py::TestBLASTCmdline::test_legacy_blastdb_commands SKIPPED [ 17%] 198s tests/test_anib.py::TestBLASTCmdline::test_legacy_blastn_commands SKIPPED [ 19%] 198s tests/test_anib.py::TestBLASTCmdline::test_makeblastdb_generation PASSED [ 21%] 200s tests/test_anib.py::TestFragments::test_fragment_files PASSED [ 23%] 201s tests/test_anib.py::TestParsing::test_blastdir_processing PASSED [ 25%] 201s tests/test_anib.py::TestParsing::test_legacy_blastdir_processing SKIPPED [ 26%] 201s tests/test_anib.py::TestParsing::test_parse_blasttab SKIPPED (legacy...) [ 28%] 201s tests/test_anim.py::TestNUCmerCmdline::test_maxmatch_cmd_generation PASSED [ 30%] 201s tests/test_anim.py::TestNUCmerCmdline::test_multi_cmd_generation PASSED [ 32%] 201s tests/test_anim.py::TestNUCmerCmdline::test_nucmer_job_generation PASSED [ 33%] 201s tests/test_anim.py::TestNUCmerCmdline::test_single_cmd_generation PASSED [ 35%] 201s tests/test_anim.py::TestDeltafileProcessing::test_deltafile_import PASSED [ 37%] 201s tests/test_anim.py::TestDeltafileProcessing::test_process_deltadir PASSED [ 39%] 219s tests/test_concordance.py::TestConcordance::test_anib_concordance PASSED [ 41%] 219s tests/test_concordance.py::TestConcordance::test_aniblastall_concordance SKIPPED [ 42%] 230s tests/test_concordance.py::TestConcordance::test_anim_concordance PASSED [ 44%] 242s tests/test_concordance.py::TestConcordance::test_tetra_concordance PASSED [ 46%] 242s tests/test_dependencies.py::test_import_biopython PASSED [ 48%] 242s tests/test_dependencies.py::test_import_matplotlib PASSED [ 50%] 242s tests/test_dependencies.py::test_import_numpy PASSED [ 51%] 242s tests/test_dependencies.py::test_import_pandas PASSED [ 53%] 242s tests/test_dependencies.py::test_import_scipy PASSED [ 55%] 242s tests/test_dependencies.py::test_run_blast PASSED [ 57%] 242s tests/test_dependencies.py::test_run_blastall SKIPPED (unconditional...) [ 58%] 242s tests/test_dependencies.py::test_run_nucmer PASSED [ 60%] 242s tests/test_graphics.py::test_png_mpl PASSED [ 62%] 242s tests/test_graphics.py::test_svg_mpl PASSED [ 64%] 242s tests/test_graphics.py::test_pdf_mpl PASSED [ 66%] 243s tests/test_graphics.py::test_png_seaborn PASSED [ 67%] 243s tests/test_graphics.py::test_svg_seaborn PASSED [ 69%] 244s tests/test_graphics.py::test_pdf_seaborn PASSED [ 71%] 244s tests/test_jobs.py::TestJob::test_add_dependency PASSED [ 73%] 244s tests/test_jobs.py::TestJob::test_create_job PASSED [ 75%] 244s tests/test_jobs.py::TestJob::test_create_job_with_command PASSED [ 76%] 244s tests/test_jobs.py::TestJob::test_remove_dependency PASSED [ 78%] 244s tests/test_jobs.py::TestJobGroup::test_1d_jobgroup PASSED [ 80%] 244s tests/test_jobs.py::TestJobGroup::test_2d_jobgroup PASSED [ 82%] 244s tests/test_jobs.py::TestJobGroup::test_add_dependency PASSED [ 83%] 244s tests/test_jobs.py::TestJobGroup::test_create_jobgroup PASSED [ 85%] 244s tests/test_jobs.py::TestJobGroup::test_remove_dependency PASSED [ 87%] 244s tests/test_multiprocessing.py::TestMultiprocessing::test_cmdsets PASSED [ 89%] 300s tests/test_multiprocessing.py::TestMultiprocessing::test_dependency_graph_run PASSED [ 91%] 301s tests/test_multiprocessing.py::TestMultiprocessing::test_multiprocessing_run PASSED [ 92%] 301s tests/test_parsing.py::test_anim_delta PASSED [ 94%] 313s tests/test_tetra.py::TestTETRA::test_correlations PASSED [ 96%] 313s tests/test_tetra.py::TestTETRA::test_tetraclean PASSED [ 98%] 319s tests/test_tetra.py::TestTETRA::test_zscore PASSED [100%] 319s 319s =============================== warnings summary =============================== 319s tests/test_anib.py::TestParsing::test_blastdir_processing 319s tests/test_concordance.py::TestConcordance::test_anib_concordance 319s /usr/lib/python3/dist-packages/pyani/anib.py:420: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0! 319s You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy. 319s A typical example is when you are setting values in a column of a DataFrame, like: 319s 319s df["col"][row_indexer] = value 319s 319s Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`. 319s 319s See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy 319s 319s results.alignment_lengths[org][org] = length 319s 319s tests/test_anim.py::TestDeltafileProcessing::test_process_deltadir 319s tests/test_concordance.py::TestConcordance::test_anim_concordance 319s /usr/lib/python3/dist-packages/pyani/anim.py:195: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0! 319s You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy. 319s A typical example is when you are setting values in a column of a DataFrame, like: 319s 319s df["col"][row_indexer] = value 319s 319s Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`. 319s 319s See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy 319s 319s results.alignment_lengths[org][org] = length 319s 319s tests/test_concordance.py::TestConcordance::test_anib_concordance 319s tests/test_concordance.py::TestConcordance::test_anim_concordance 319s tests/test_concordance.py::TestConcordance::test_tetra_concordance 319s /tmp/autopkgtest.pFIC2K/build.cpA/src/tests/test_concordance.py:102: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0! 319s You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy. 319s A typical example is when you are setting values in a column of a DataFrame, like: 319s 319s df["col"][row_indexer] = value 319s 319s Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`. 319s 319s See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy 319s 319s data[columns[idx]][row] = 1.0 319s 319s tests/test_concordance.py::TestConcordance::test_anib_concordance 319s tests/test_concordance.py::TestConcordance::test_anib_concordance 319s tests/test_concordance.py::TestConcordance::test_anib_concordance 319s tests/test_concordance.py::TestConcordance::test_anim_concordance 319s tests/test_concordance.py::TestConcordance::test_anim_concordance 319s tests/test_concordance.py::TestConcordance::test_anim_concordance 319s tests/test_concordance.py::TestConcordance::test_tetra_concordance 319s tests/test_concordance.py::TestConcordance::test_tetra_concordance 319s tests/test_concordance.py::TestConcordance::test_tetra_concordance 319s /tmp/autopkgtest.pFIC2K/build.cpA/src/tests/test_concordance.py:98: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0! 319s You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy. 319s A typical example is when you are setting values in a column of a DataFrame, like: 319s 319s df["col"][row_indexer] = value 319s 319s Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`. 319s 319s See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy 319s 319s data[columns[idx]][row] = float(val) 319s 319s tests/test_concordance.py::TestConcordance::test_anib_concordance 319s tests/test_concordance.py::TestConcordance::test_anib_concordance 319s tests/test_concordance.py::TestConcordance::test_anim_concordance 319s tests/test_concordance.py::TestConcordance::test_anim_concordance 319s tests/test_concordance.py::TestConcordance::test_tetra_concordance 319s tests/test_concordance.py::TestConcordance::test_tetra_concordance 319s /tmp/autopkgtest.pFIC2K/build.cpA/src/tests/test_concordance.py:100: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0! 319s You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy. 319s A typical example is when you are setting values in a column of a DataFrame, like: 319s 319s df["col"][row_indexer] = value 319s 319s Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`. 319s 319s See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy 319s 319s data[columns[idx]][row] = 100.0 319s 319s tests/test_concordance.py::TestConcordance::test_anib_concordance 319s /tmp/autopkgtest.pFIC2K/build.cpA/src/tests/test_concordance.py:194: FutureWarning: Downcasting object dtype arrays on .fillna, .ffill, .bfill is deprecated and will change in a future version. Call result.infer_objects(copy=False) instead. To opt-in to the future behavior, set `pd.set_option('future.no_silent_downcasting', True)` 319s lo_target = self.target["ANIb"].mask(self.target["ANIb"] >= 90).fillna(0) 319s 319s tests/test_concordance.py::TestConcordance::test_anib_concordance 319s /tmp/autopkgtest.pFIC2K/build.cpA/src/tests/test_concordance.py:195: FutureWarning: Downcasting object dtype arrays on .fillna, .ffill, .bfill is deprecated and will change in a future version. Call result.infer_objects(copy=False) instead. To opt-in to the future behavior, set `pd.set_option('future.no_silent_downcasting', True)` 319s hi_target = self.target["ANIb"].mask(self.target["ANIb"] < 90).fillna(0) 319s 319s tests/test_concordance.py::TestConcordance::test_tetra_concordance 319s tests/test_tetra.py::TestTETRA::test_correlations 319s /usr/lib/python3/dist-packages/pyani/tetra.py:156: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0! 319s You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy. 319s A typical example is when you are setting values in a column of a DataFrame, like: 319s 319s df["col"][row_indexer] = value 319s 319s Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`. 319s 319s See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy 319s 320s correlations[org1][org2] = diffprods / math.sqrt(zdiffs2[0] * zdiffs2[1]) 320s 320s tests/test_concordance.py::TestConcordance::test_tetra_concordance 320s tests/test_tetra.py::TestTETRA::test_correlations 320s /usr/lib/python3/dist-packages/pyani/tetra.py:157: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0! 320s You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy. 320s A typical example is when you are setting values in a column of a DataFrame, like: 320s 320s df["col"][row_indexer] = value 320s 320s Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`. 320s 320s See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy 320s 320s correlations[org2][org1] = correlations[org1][org2] 320s 320s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 320s =========== 46 passed, 10 skipped, 28 warnings in 124.89s (0:02:04) ============ 320s Testing with python3.13 in /tmp/autopkgtest.pFIC2K/build.cpA/src: 320s ============================= test session starts ============================== 320s platform linux -- Python 3.13.11, pytest-9.0.2, pluggy-1.6.0 -- /usr/bin/python3 320s cachedir: .pytest_cache 320s rootdir: /tmp/autopkgtest.pFIC2K/build.cpA/src 320s plugins: typeguard-4.4.4 322s collecting ... collected 56 items 322s 322s tests/test_anib.py::TestBLASTCmdline::test_blastall_dbjobdict SKIPPED [ 1%] 322s tests/test_anib.py::TestBLASTCmdline::test_blastall_generation SKIPPED [ 3%] 322s tests/test_anib.py::TestBLASTCmdline::test_blastall_graph SKIPPED (l...) [ 5%] 322s tests/test_anib.py::TestBLASTCmdline::test_blastdb_commands PASSED [ 7%] 322s tests/test_anib.py::TestBLASTCmdline::test_blastn_commands PASSED [ 8%] 322s tests/test_anib.py::TestBLASTCmdline::test_blastn_dbjobdict PASSED [ 10%] 322s tests/test_anib.py::TestBLASTCmdline::test_blastn_generation PASSED [ 12%] 324s tests/test_anib.py::TestBLASTCmdline::test_blastn_graph PASSED [ 14%] 324s tests/test_anib.py::TestBLASTCmdline::test_formatdb_generation SKIPPED [ 16%] 324s tests/test_anib.py::TestBLASTCmdline::test_legacy_blastdb_commands SKIPPED [ 17%] 324s tests/test_anib.py::TestBLASTCmdline::test_legacy_blastn_commands SKIPPED [ 19%] 324s tests/test_anib.py::TestBLASTCmdline::test_makeblastdb_generation PASSED [ 21%] 325s tests/test_anib.py::TestFragments::test_fragment_files PASSED [ 23%] 326s tests/test_anib.py::TestParsing::test_blastdir_processing PASSED [ 25%] 326s tests/test_anib.py::TestParsing::test_legacy_blastdir_processing SKIPPED [ 26%] 326s tests/test_anib.py::TestParsing::test_parse_blasttab SKIPPED (legacy...) [ 28%] 326s tests/test_anim.py::TestNUCmerCmdline::test_maxmatch_cmd_generation PASSED [ 30%] 326s tests/test_anim.py::TestNUCmerCmdline::test_multi_cmd_generation PASSED [ 32%] 326s tests/test_anim.py::TestNUCmerCmdline::test_nucmer_job_generation PASSED [ 33%] 326s tests/test_anim.py::TestNUCmerCmdline::test_single_cmd_generation PASSED [ 35%] 326s tests/test_anim.py::TestDeltafileProcessing::test_deltafile_import PASSED [ 37%] 326s tests/test_anim.py::TestDeltafileProcessing::test_process_deltadir PASSED [ 39%] 343s tests/test_concordance.py::TestConcordance::test_anib_concordance PASSED [ 41%] 343s tests/test_concordance.py::TestConcordance::test_aniblastall_concordance SKIPPED [ 42%] 354s tests/test_concordance.py::TestConcordance::test_anim_concordance PASSED [ 44%] 366s tests/test_concordance.py::TestConcordance::test_tetra_concordance PASSED [ 46%] 366s tests/test_dependencies.py::test_import_biopython PASSED [ 48%] 366s tests/test_dependencies.py::test_import_matplotlib PASSED [ 50%] 366s tests/test_dependencies.py::test_import_numpy PASSED [ 51%] 366s tests/test_dependencies.py::test_import_pandas PASSED [ 53%] 366s tests/test_dependencies.py::test_import_scipy PASSED [ 55%] 366s tests/test_dependencies.py::test_run_blast PASSED [ 57%] 366s tests/test_dependencies.py::test_run_blastall SKIPPED (unconditional...) [ 58%] 366s tests/test_dependencies.py::test_run_nucmer PASSED [ 60%] 367s tests/test_graphics.py::test_png_mpl PASSED [ 62%] 367s tests/test_graphics.py::test_svg_mpl PASSED [ 64%] 367s tests/test_graphics.py::test_pdf_mpl PASSED [ 66%] 367s tests/test_graphics.py::test_png_seaborn PASSED [ 67%] 368s tests/test_graphics.py::test_svg_seaborn PASSED [ 69%] 368s tests/test_graphics.py::test_pdf_seaborn PASSED [ 71%] 368s tests/test_jobs.py::TestJob::test_add_dependency PASSED [ 73%] 368s tests/test_jobs.py::TestJob::test_create_job PASSED [ 75%] 368s tests/test_jobs.py::TestJob::test_create_job_with_command PASSED [ 76%] 368s tests/test_jobs.py::TestJob::test_remove_dependency PASSED [ 78%] 368s tests/test_jobs.py::TestJobGroup::test_1d_jobgroup PASSED [ 80%] 368s tests/test_jobs.py::TestJobGroup::test_2d_jobgroup PASSED [ 82%] 368s tests/test_jobs.py::TestJobGroup::test_add_dependency PASSED [ 83%] 368s tests/test_jobs.py::TestJobGroup::test_create_jobgroup PASSED [ 85%] 368s tests/test_jobs.py::TestJobGroup::test_remove_dependency PASSED [ 87%] 368s tests/test_multiprocessing.py::TestMultiprocessing::test_cmdsets PASSED [ 89%] 425s tests/test_multiprocessing.py::TestMultiprocessing::test_dependency_graph_run PASSED [ 91%] 425s tests/test_multiprocessing.py::TestMultiprocessing::test_multiprocessing_run PASSED [ 92%] 425s tests/test_parsing.py::test_anim_delta PASSED [ 94%] 438s tests/test_tetra.py::TestTETRA::test_correlations PASSED [ 96%] 438s tests/test_tetra.py::TestTETRA::test_tetraclean PASSED [ 98%] 444s tests/test_tetra.py::TestTETRA::test_zscore PASSED [100%] 444s 444s =============================== warnings summary =============================== 444s tests/test_anib.py::TestParsing::test_blastdir_processing 444s tests/test_concordance.py::TestConcordance::test_anib_concordance 444s /usr/lib/python3/dist-packages/pyani/anib.py:420: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0! 444s You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy. 444s A typical example is when you are setting values in a column of a DataFrame, like: 444s 444s df["col"][row_indexer] = value 444s 444s Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`. 444s 444s See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy 444s 444s results.alignment_lengths[org][org] = length 444s 444s tests/test_anim.py::TestDeltafileProcessing::test_process_deltadir 444s tests/test_concordance.py::TestConcordance::test_anim_concordance 444s /usr/lib/python3/dist-packages/pyani/anim.py:195: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0! 444s You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy. 444s A typical example is when you are setting values in a column of a DataFrame, like: 444s 444s df["col"][row_indexer] = value 444s 444s Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`. 444s 444s See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy 444s 444s results.alignment_lengths[org][org] = length 444s 444s tests/test_concordance.py::TestConcordance::test_anib_concordance 444s tests/test_concordance.py::TestConcordance::test_anim_concordance 444s tests/test_concordance.py::TestConcordance::test_tetra_concordance 444s /tmp/autopkgtest.pFIC2K/build.cpA/src/tests/test_concordance.py:102: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0! 444s You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy. 444s A typical example is when you are setting values in a column of a DataFrame, like: 444s 444s df["col"][row_indexer] = value 444s 444s Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`. 444s 444s See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy 444s 444s data[columns[idx]][row] = 1.0 444s 444s tests/test_concordance.py::TestConcordance::test_anib_concordance 444s tests/test_concordance.py::TestConcordance::test_anib_concordance 444s tests/test_concordance.py::TestConcordance::test_anib_concordance 444s tests/test_concordance.py::TestConcordance::test_anim_concordance 444s tests/test_concordance.py::TestConcordance::test_anim_concordance 444s tests/test_concordance.py::TestConcordance::test_anim_concordance 444s tests/test_concordance.py::TestConcordance::test_tetra_concordance 444s tests/test_concordance.py::TestConcordance::test_tetra_concordance 444s tests/test_concordance.py::TestConcordance::test_tetra_concordance 444s /tmp/autopkgtest.pFIC2K/build.cpA/src/tests/test_concordance.py:98: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0! 444s You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy. 444s A typical example is when you are setting values in a column of a DataFrame, like: 444s 444s df["col"][row_indexer] = value 444s 444s Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`. 444s 444s See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy 444s 444s data[columns[idx]][row] = float(val) 444s 444s tests/test_concordance.py::TestConcordance::test_anib_concordance 444s tests/test_concordance.py::TestConcordance::test_anib_concordance 444s tests/test_concordance.py::TestConcordance::test_anim_concordance 444s tests/test_concordance.py::TestConcordance::test_anim_concordance 444s tests/test_concordance.py::TestConcordance::test_tetra_concordance 444s tests/test_concordance.py::TestConcordance::test_tetra_concordance 444s /tmp/autopkgtest.pFIC2K/build.cpA/src/tests/test_concordance.py:100: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0! 444s You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy. 444s A typical example is when you are setting values in a column of a DataFrame, like: 444s 444s df["col"][row_indexer] = value 444s 444s Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`. 444s 444s See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy 444s 444s data[columns[idx]][row] = 100.0 444s 444s tests/test_concordance.py::TestConcordance::test_anib_concordance 444s /tmp/autopkgtest.pFIC2K/build.cpA/src/tests/test_concordance.py:194: FutureWarning: Downcasting object dtype arrays on .fillna, .ffill, .bfill is deprecated and will change in a future version. Call result.infer_objects(copy=False) instead. To opt-in to the future behavior, set `pd.set_option('future.no_silent_downcasting', True)` 444s lo_target = self.target["ANIb"].mask(self.target["ANIb"] >= 90).fillna(0) 444s 444s tests/test_concordance.py::TestConcordance::test_anib_concordance 444s /tmp/autopkgtest.pFIC2K/build.cpA/src/tests/test_concordance.py:195: FutureWarning: Downcasting object dtype arrays on .fillna, .ffill, .bfill is deprecated and will change in a future version. Call result.infer_objects(copy=False) instead. To opt-in to the future behavior, set `pd.set_option('future.no_silent_downcasting', True)` 444s hi_target = self.target["ANIb"].mask(self.target["ANIb"] < 90).fillna(0) 444s 444s tests/test_concordance.py::TestConcordance::test_tetra_concordance 444s tests/test_tetra.py::TestTETRA::test_correlations 444s /usr/lib/python3/dist-packages/pyani/tetra.py:156: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0! 444s You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy. 444s A typical example is when you are setting values in a column of a DataFrame, like: 444s 444s df["col"][row_indexer] = value 444s 444s Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`. 444s 444s See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy 444s 444s correlations[org1][org2] = diffprods / math.sqrt(zdiffs2[0] * zdiffs2[1]) 444s 444s tests/test_concordance.py::TestConcordance::test_tetra_concordance 444s tests/test_tetra.py::TestTETRA::test_correlations 444s /usr/lib/python3/dist-packages/pyani/tetra.py:157: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0! 444s You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy. 444s A typical example is when you are setting values in a column of a DataFrame, like: 444s 444s df["col"][row_indexer] = value 444s 444s Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`. 444s 444s See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy 444s 444s correlations[org2][org1] = correlations[org1][org2] 444s 444s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 444s =========== 46 passed, 10 skipped, 28 warnings in 123.16s (0:02:03) ============ 445s autopkgtest [23:24:02]: test run-unit-test: -----------------------] 446s autopkgtest [23:24:03]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 446s run-unit-test PASS 446s autopkgtest [23:24:03]: test autodep8-python3: preparing testbed 465s Creating nova instance adt-resolute-arm64-python-pyani-20260203-231637-juju-7f2275-prod-proposed-migration-environment-2-a0c34906-37b5-41ba-abcb-a371f4a3d558 from image adt/ubuntu-resolute-arm64-server-20260203.img (UUID fd4bac28-a946-4216-8755-72db0faf84da)... 518s autopkgtest [23:25:15]: testbed dpkg architecture: arm64 518s autopkgtest [23:25:15]: testbed apt version: 3.1.14 518s autopkgtest [23:25:15]: @@@@@@@@@@@@@@@@@@@@ test bed setup 519s autopkgtest [23:25:16]: testbed release detected to be: resolute 519s autopkgtest [23:25:16]: updating testbed package index (apt update) 520s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 520s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 520s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 520s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 520s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [232 kB] 520s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1337 kB] 520s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [5260 B] 520s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [27.9 kB] 520s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 Packages [293 kB] 520s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 c-n-f Metadata [7048 B] 520s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 Packages [52.9 kB] 520s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 c-n-f Metadata [328 B] 520s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 Packages [1188 kB] 520s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 c-n-f Metadata [31.5 kB] 520s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 Packages [21.5 kB] 520s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 c-n-f Metadata [744 B] 523s Fetched 3322 kB in 1s (3556 kB/s) 524s Reading package lists... 524s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 525s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 525s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 525s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 525s Reading package lists... 525s Reading package lists... 526s Building dependency tree... 526s Reading state information... 526s Calculating upgrade... 526s The following packages will be upgraded: 526s firmware-sof-signed libzstd1 mtd-utils powermgmt-base python3-pkg-resources 526s python3-setuptools zstd 526s 7 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 526s Need to get 3849 kB of archives. 526s After this operation, 2048 B of additional disk space will be used. 526s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 firmware-sof-signed all 2025.05.1-1build1 [1696 kB] 527s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 libzstd1 arm64 1.5.7+dfsg-3 [277 kB] 527s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 powermgmt-base all 1.38ubuntu2 [7878 B] 527s Get:4 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 python3-pkg-resources all 78.1.1-0.1build1 [144 kB] 527s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 python3-setuptools all 78.1.1-0.1build1 [661 kB] 527s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 zstd arm64 1.5.7+dfsg-3 [596 kB] 527s Get:7 http://ftpmaster.internal/ubuntu resolute/main arm64 mtd-utils arm64 1:2.3.0-1ubuntu2 [466 kB] 527s dpkg-preconfigure: unable to re-open stdin: No such file or directory 527s Fetched 3849 kB in 1s (7078 kB/s) 528s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 89360 files and directories currently installed.) 528s Preparing to unpack .../firmware-sof-signed_2025.05.1-1build1_all.deb ... 528s Unpacking firmware-sof-signed (2025.05.1-1build1) over (2025.05.1-1) ... 528s Preparing to unpack .../libzstd1_1.5.7+dfsg-3_arm64.deb ... 528s Unpacking libzstd1:arm64 (1.5.7+dfsg-3) over (1.5.7+dfsg-2) ... 528s Setting up libzstd1:arm64 (1.5.7+dfsg-3) ... 529s (Reading database ... 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(78.1.1-0.1build1) over (78.1.1-0.1) ... 529s Preparing to unpack .../zstd_1.5.7+dfsg-3_arm64.deb ... 529s Unpacking zstd (1.5.7+dfsg-3) over (1.5.7+dfsg-2) ... 529s Preparing to unpack .../mtd-utils_1%3a2.3.0-1ubuntu2_arm64.deb ... 529s Unpacking mtd-utils (1:2.3.0-1ubuntu2) over (1:2.3.0-1ubuntu1) ... 530s Setting up python3-pkg-resources (78.1.1-0.1build1) ... 530s Setting up powermgmt-base (1.38ubuntu2) ... 530s Setting up python3-setuptools (78.1.1-0.1build1) ... 531s Setting up firmware-sof-signed (2025.05.1-1build1) ... 531s Setting up mtd-utils (1:2.3.0-1ubuntu2) ... 531s Setting up zstd (1.5.7+dfsg-3) ... 531s Processing triggers for man-db (2.13.1-1) ... 533s Processing triggers for libc-bin (2.42-2ubuntu4) ... 533s autopkgtest [23:25:30]: upgrading testbed (apt dist-upgrade and autopurge) 533s Reading package lists... 533s Building dependency tree... 533s Reading state information... 533s Calculating upgrade... 534s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 534s Reading package lists... 534s Building dependency tree... 534s Reading state information... 534s Solving dependencies... 535s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 538s Reading package lists... 538s Building dependency tree... 538s Reading state information... 538s Solving dependencies... 538s The following NEW packages will be installed: 538s fontconfig-config fonts-dejavu-core fonts-dejavu-extra fonts-dejavu-mono 538s fonts-lyx fonts-urw-base35 libblas3 libcairo2 libdeflate0 libfontconfig1 538s libfontenc1 libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 538s libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 liblapack3 liblcms2-2 538s liblerc4 libmbedcrypto16 libmbedtls21 libmbedx509-7 libncbi-vdb3 538s libopenjp2-7 libpixman-1-0 libpython3.14-minimal libpython3.14-stdlib 538s libqhull-r8.0 libraqm0 libsharpyuv0 libtcl8.6 libtiff6 libtk8.6 libwebp7 538s libwebpdemux2 libwebpmux3 libxcb-render0 libxcb-shm0 libxft2 libxrender1 538s libxslt1.1 libxss1 libzopfli1 mummer ncbi-blast+ ncbi-data ncbi-vdb-data 538s python-matplotlib-data python3-all python3-biopython python3-brotli 538s python3-cairo python3-charset-normalizer python3-contourpy python3-cycler 538s python3-decorator python3-fonttools python3-freetype python3-kiwisolver 538s python3-lxml python3-lz4 python3-matplotlib python3-mpmath python3-numpy 538s python3-numpy-dev python3-pandas python3-pandas-lib python3-pil 538s python3-pil.imagetk python3-pyani python3-pytz python3-reportlab 538s python3-rlpycairo python3-scipy python3-seaborn python3-sympy python3-tk 538s python3-ufolib2 python3-zopfli python3.13-tk python3.14 python3.14-minimal 538s python3.14-tk sgml-base unicode-data w3c-sgml-lib x11-common 538s xfonts-encodings xfonts-utils xml-core 538s 0 upgraded, 93 newly installed, 0 to remove and 0 not upgraded. 538s Need to get 127 MB of archives. 538s After this operation, 566 MB of additional disk space will be used. 538s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-numpy-dev arm64 1:2.3.5+ds-3 [366 kB] 538s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 libblas3 arm64 3.12.1-7ubuntu1 [181 kB] 538s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 libgfortran5 arm64 15.2.0-12ubuntu1 [451 kB] 538s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 liblapack3 arm64 3.12.1-7ubuntu1 [2299 kB] 539s Get:5 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-numpy arm64 1:2.3.5+ds-3 [4569 kB] 539s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 libpython3.14-minimal arm64 3.14.2-1 [917 kB] 539s Get:7 http://ftpmaster.internal/ubuntu resolute/main arm64 python3.14-minimal arm64 3.14.2-1 [2548 kB] 539s Get:8 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-mono all 2.37-8build1 [502 kB] 539s Get:9 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-core all 2.37-8build1 [834 kB] 539s Get:10 http://ftpmaster.internal/ubuntu resolute/main arm64 libfontenc1 arm64 1:1.1.8-1build2 [13.9 kB] 539s Get:11 http://ftpmaster.internal/ubuntu resolute/main arm64 x11-common all 1:7.7+24ubuntu1 [22.4 kB] 539s Get:12 http://ftpmaster.internal/ubuntu resolute/main arm64 xfonts-encodings all 1:1.0.5-0ubuntu3 [576 kB] 539s Get:13 http://ftpmaster.internal/ubuntu resolute/main arm64 xfonts-utils arm64 1:7.7+7build1 [94.8 kB] 539s Get:14 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-urw-base35 all 20200910-8build1 [10.9 MB] 540s Get:15 http://ftpmaster.internal/ubuntu resolute/main arm64 fontconfig-config arm64 2.17.1-3ubuntu1 [38.5 kB] 540s Get:16 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-extra all 2.37-8build1 [1944 kB] 540s Get:17 http://ftpmaster.internal/ubuntu resolute/universe arm64 fonts-lyx all 2.5.0~RC2-3 [171 kB] 540s Get:18 http://ftpmaster.internal/ubuntu resolute/main arm64 libfontconfig1 arm64 2.17.1-3ubuntu1 [144 kB] 540s Get:19 http://ftpmaster.internal/ubuntu resolute/main arm64 libpixman-1-0 arm64 0.46.4-1 [204 kB] 540s Get:20 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-render0 arm64 1.17.0-2ubuntu1 [16.4 kB] 540s Get:21 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-shm0 arm64 1.17.0-2ubuntu1 [5938 B] 540s Get:22 http://ftpmaster.internal/ubuntu resolute/main arm64 libxrender1 arm64 1:0.9.12-1 [19.5 kB] 540s Get:23 http://ftpmaster.internal/ubuntu resolute/main arm64 libcairo2 arm64 1.18.4-3 [556 kB] 540s Get:24 http://ftpmaster.internal/ubuntu resolute/main arm64 libdeflate0 arm64 1.23-2 [46.4 kB] 540s Get:25 http://ftpmaster.internal/ubuntu resolute/main arm64 libgomp1 arm64 15.2.0-12ubuntu1 [147 kB] 540s Get:26 http://ftpmaster.internal/ubuntu resolute/main arm64 libgraphite2-3 arm64 1.3.14-11ubuntu1 [72.1 kB] 540s Get:27 http://ftpmaster.internal/ubuntu resolute/main arm64 libharfbuzz0b arm64 12.3.2-1 [510 kB] 540s Get:28 http://ftpmaster.internal/ubuntu resolute/main arm64 libimagequant0 arm64 2.18.0-1build1 [37.1 kB] 540s Get:29 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg-turbo8 arm64 2.1.5-4ubuntu2 [165 kB] 540s Get:30 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 540s Get:31 http://ftpmaster.internal/ubuntu resolute/main arm64 liblcms2-2 arm64 2.17-1 [170 kB] 540s Get:32 http://ftpmaster.internal/ubuntu resolute/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu2 [174 kB] 540s Get:33 http://ftpmaster.internal/ubuntu resolute/universe arm64 libmbedcrypto16 arm64 3.6.5-0.1ubuntu2 [256 kB] 540s Get:34 http://ftpmaster.internal/ubuntu resolute/universe arm64 libmbedx509-7 arm64 3.6.5-0.1ubuntu2 [35.3 kB] 540s Get:35 http://ftpmaster.internal/ubuntu resolute/universe arm64 libmbedtls21 arm64 3.6.5-0.1ubuntu2 [126 kB] 540s Get:36 http://ftpmaster.internal/ubuntu resolute/universe arm64 ncbi-vdb-data all 3.2.1+dfsg-2build1 [81.4 kB] 540s Get:37 http://ftpmaster.internal/ubuntu resolute/universe arm64 libncbi-vdb3 arm64 3.2.1+dfsg-2build1 [1240 kB] 540s Get:38 http://ftpmaster.internal/ubuntu resolute/main arm64 libpython3.14-stdlib arm64 3.14.2-1 [2351 kB] 540s Get:39 http://ftpmaster.internal/ubuntu resolute/universe arm64 libqhull-r8.0 arm64 2020.2-8 [191 kB] 540s Get:40 http://ftpmaster.internal/ubuntu resolute/main arm64 libraqm0 arm64 0.10.3-1 [15.0 kB] 540s Get:41 http://ftpmaster.internal/ubuntu resolute/main arm64 libsharpyuv0 arm64 1.5.0-0.1build1 [16.7 kB] 540s Get:42 http://ftpmaster.internal/ubuntu resolute/main arm64 libtcl8.6 arm64 8.6.17+dfsg-1build1 [983 kB] 540s Get:43 http://ftpmaster.internal/ubuntu resolute/main arm64 libjbig0 arm64 2.1-6.1ubuntu3 [29.2 kB] 540s Get:44 http://ftpmaster.internal/ubuntu resolute/main arm64 libwebp7 arm64 1.5.0-0.1build1 [205 kB] 540s Get:45 http://ftpmaster.internal/ubuntu resolute/main arm64 libtiff6 arm64 4.7.0-3ubuntu3 [196 kB] 540s Get:46 http://ftpmaster.internal/ubuntu resolute/main arm64 libxft2 arm64 2.3.6-1build2 [43.2 kB] 540s Get:47 http://ftpmaster.internal/ubuntu resolute/main arm64 libxss1 arm64 1:1.2.3-1build4 [7102 B] 540s Get:48 http://ftpmaster.internal/ubuntu resolute/main arm64 libtk8.6 arm64 8.6.17-1 [811 kB] 540s Get:49 http://ftpmaster.internal/ubuntu resolute/main arm64 libwebpdemux2 arm64 1.5.0-0.1build1 [12.5 kB] 540s Get:50 http://ftpmaster.internal/ubuntu resolute/main arm64 libwebpmux3 arm64 1.5.0-0.1build1 [25.2 kB] 540s Get:51 http://ftpmaster.internal/ubuntu resolute/main arm64 libxslt1.1 arm64 1.1.43-0.3 [172 kB] 540s Get:52 http://ftpmaster.internal/ubuntu resolute/universe arm64 libzopfli1 arm64 1.0.3-3build1 [106 kB] 540s Get:53 http://ftpmaster.internal/ubuntu resolute/universe arm64 mummer arm64 3.23+dfsg-8build1 [678 kB] 540s Get:54 http://ftpmaster.internal/ubuntu resolute/universe arm64 ncbi-data all 6.1.20170106+dfsg2-7 [3969 kB] 540s Get:55 http://ftpmaster.internal/ubuntu resolute/universe arm64 ncbi-blast+ arm64 2.16.0+ds-7 [15.4 MB] 541s Get:56 http://ftpmaster.internal/ubuntu resolute/universe arm64 python-matplotlib-data all 3.10.7+dfsg1-1 [2930 kB] 541s Get:57 http://ftpmaster.internal/ubuntu resolute/main arm64 python3.14 arm64 3.14.2-1 [816 kB] 541s Get:58 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-all arm64 3.13.9-3 [890 B] 541s Get:59 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-charset-normalizer arm64 3.4.4-2 [169 kB] 541s Get:60 http://ftpmaster.internal/ubuntu resolute/main arm64 python3.13-tk arm64 3.13.11-1 [106 kB] 541s Get:61 http://ftpmaster.internal/ubuntu resolute/main arm64 python3.14-tk arm64 3.14.2-1 [108 kB] 541s Get:62 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-tk arm64 3.13.9-3 [11.2 kB] 541s Get:63 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pil.imagetk arm64 12.0.0-1ubuntu1 [9532 B] 541s Get:64 http://ftpmaster.internal/ubuntu resolute/main arm64 libopenjp2-7 arm64 2.5.4-1 [180 kB] 541s Get:65 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-pil arm64 12.0.0-1ubuntu1 [486 kB] 541s Get:66 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-cairo arm64 1.27.0-2build1 [141 kB] 541s Get:67 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-freetype all 2.5.1-2 [92.2 kB] 541s Get:68 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-rlpycairo all 0.3.0-4 [9332 B] 541s Get:69 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-reportlab all 4.4.9-1 [1149 kB] 541s Get:70 http://ftpmaster.internal/ubuntu resolute/main arm64 sgml-base all 1.31+nmu1 [11.0 kB] 541s Get:71 http://ftpmaster.internal/ubuntu resolute/main arm64 xml-core all 0.19build1 [20.3 kB] 541s Get:72 http://ftpmaster.internal/ubuntu resolute/universe arm64 w3c-sgml-lib all 1.3-3build1 [278 kB] 541s Get:73 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-biopython arm64 1.86+dfsg-1 [1675 kB] 541s Get:74 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-brotli arm64 1.1.0-2build6 [343 kB] 541s Get:75 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-contourpy arm64 1.3.3-1 [245 kB] 541s Get:76 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-cycler all 0.12.1-2 [9850 B] 541s Get:77 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-decorator all 5.2.1-2 [28.1 kB] 541s Get:78 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-lxml arm64 6.0.2-1 [2155 kB] 542s Get:79 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-lz4 arm64 4.4.5+dfsg-1 [27.9 kB] 542s Get:80 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-scipy arm64 1.16.3-4 [17.5 MB] 542s Get:81 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-mpmath all 1.3.0-2 [423 kB] 542s Get:82 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-sympy all 1.14.0-2 [4306 kB] 542s Get:83 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-ufolib2 all 0.18.1+dfsg1-1 [33.7 kB] 542s Get:84 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-zopfli arm64 0.4.0-1 [10.8 kB] 542s Get:85 http://ftpmaster.internal/ubuntu resolute/universe arm64 unicode-data all 16.0.0-1build1 [9543 kB] 542s Get:86 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-fonttools arm64 4.61.1-3 [1680 kB] 542s Get:87 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-kiwisolver arm64 1.4.10~rc0-1 [60.1 kB] 543s Get:88 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-matplotlib arm64 3.10.7+dfsg1-1 [17.1 MB] 543s Get:89 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pytz all 2025.2-5 [32.4 kB] 543s Get:90 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pandas-lib arm64 2.3.3+dfsg-3 [6290 kB] 543s Get:91 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pandas all 2.3.3+dfsg-3 [2948 kB] 543s Get:92 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-seaborn all 0.13.2-6 [225 kB] 543s Get:93 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pyani arm64 0.2.13-1 [46.7 kB] 544s Fetched 127 MB in 5s (26.0 MB/s) 544s Selecting previously unselected package python3-numpy-dev:arm64. 544s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 89360 files and directories currently installed.) 544s Preparing to unpack .../00-python3-numpy-dev_1%3a2.3.5+ds-3_arm64.deb ... 544s Unpacking python3-numpy-dev:arm64 (1:2.3.5+ds-3) ... 544s Selecting previously unselected package libblas3:arm64. 544s Preparing to unpack .../01-libblas3_3.12.1-7ubuntu1_arm64.deb ... 544s Unpacking libblas3:arm64 (3.12.1-7ubuntu1) ... 544s Selecting previously unselected package libgfortran5:arm64. 544s Preparing to unpack .../02-libgfortran5_15.2.0-12ubuntu1_arm64.deb ... 544s Unpacking libgfortran5:arm64 (15.2.0-12ubuntu1) ... 544s Selecting previously unselected package liblapack3:arm64. 544s Preparing to unpack .../03-liblapack3_3.12.1-7ubuntu1_arm64.deb ... 544s Unpacking liblapack3:arm64 (3.12.1-7ubuntu1) ... 544s Selecting previously unselected package python3-numpy. 544s Preparing to unpack .../04-python3-numpy_1%3a2.3.5+ds-3_arm64.deb ... 544s Unpacking python3-numpy (1:2.3.5+ds-3) ... 544s Selecting previously unselected package libpython3.14-minimal:arm64. 544s Preparing to unpack .../05-libpython3.14-minimal_3.14.2-1_arm64.deb ... 544s Unpacking libpython3.14-minimal:arm64 (3.14.2-1) ... 544s Selecting previously unselected package python3.14-minimal. 544s Preparing to unpack .../06-python3.14-minimal_3.14.2-1_arm64.deb ... 544s Unpacking python3.14-minimal (3.14.2-1) ... 544s Selecting previously unselected package fonts-dejavu-mono. 544s Preparing to unpack .../07-fonts-dejavu-mono_2.37-8build1_all.deb ... 544s Unpacking fonts-dejavu-mono (2.37-8build1) ... 544s Selecting previously unselected package fonts-dejavu-core. 544s Preparing to unpack .../08-fonts-dejavu-core_2.37-8build1_all.deb ... 544s Unpacking fonts-dejavu-core (2.37-8build1) ... 544s Selecting previously unselected package libfontenc1:arm64. 544s Preparing to unpack .../09-libfontenc1_1%3a1.1.8-1build2_arm64.deb ... 544s Unpacking libfontenc1:arm64 (1:1.1.8-1build2) ... 544s Selecting previously unselected package x11-common. 544s Preparing to unpack .../10-x11-common_1%3a7.7+24ubuntu1_all.deb ... 544s Unpacking x11-common (1:7.7+24ubuntu1) ... 544s Selecting previously unselected package xfonts-encodings. 544s Preparing to unpack .../11-xfonts-encodings_1%3a1.0.5-0ubuntu3_all.deb ... 544s Unpacking xfonts-encodings (1:1.0.5-0ubuntu3) ... 545s Selecting previously unselected package xfonts-utils. 545s Preparing to unpack .../12-xfonts-utils_1%3a7.7+7build1_arm64.deb ... 545s Unpacking xfonts-utils (1:7.7+7build1) ... 545s Selecting previously unselected package fonts-urw-base35. 545s Preparing to unpack .../13-fonts-urw-base35_20200910-8build1_all.deb ... 545s Unpacking fonts-urw-base35 (20200910-8build1) ... 545s Selecting previously unselected package fontconfig-config. 545s Preparing to unpack .../14-fontconfig-config_2.17.1-3ubuntu1_arm64.deb ... 545s Unpacking fontconfig-config (2.17.1-3ubuntu1) ... 545s Selecting previously unselected package fonts-dejavu-extra. 545s Preparing to unpack .../15-fonts-dejavu-extra_2.37-8build1_all.deb ... 545s Unpacking fonts-dejavu-extra (2.37-8build1) ... 545s Selecting previously unselected package fonts-lyx. 545s Preparing to unpack .../16-fonts-lyx_2.5.0~RC2-3_all.deb ... 545s Unpacking fonts-lyx (2.5.0~RC2-3) ... 545s Selecting previously unselected package libfontconfig1:arm64. 545s Preparing to unpack .../17-libfontconfig1_2.17.1-3ubuntu1_arm64.deb ... 545s Unpacking libfontconfig1:arm64 (2.17.1-3ubuntu1) ... 545s Selecting previously unselected package libpixman-1-0:arm64. 545s Preparing to unpack .../18-libpixman-1-0_0.46.4-1_arm64.deb ... 545s Unpacking libpixman-1-0:arm64 (0.46.4-1) ... 545s Selecting previously unselected package libxcb-render0:arm64. 545s Preparing to unpack .../19-libxcb-render0_1.17.0-2ubuntu1_arm64.deb ... 545s Unpacking libxcb-render0:arm64 (1.17.0-2ubuntu1) ... 545s Selecting previously unselected package libxcb-shm0:arm64. 545s Preparing to unpack .../20-libxcb-shm0_1.17.0-2ubuntu1_arm64.deb ... 545s Unpacking libxcb-shm0:arm64 (1.17.0-2ubuntu1) ... 545s Selecting previously unselected package libxrender1:arm64. 545s Preparing to unpack .../21-libxrender1_1%3a0.9.12-1_arm64.deb ... 545s Unpacking libxrender1:arm64 (1:0.9.12-1) ... 545s Selecting previously unselected package libcairo2:arm64. 545s Preparing to unpack .../22-libcairo2_1.18.4-3_arm64.deb ... 545s Unpacking libcairo2:arm64 (1.18.4-3) ... 545s Selecting previously unselected package libdeflate0:arm64. 545s Preparing to unpack .../23-libdeflate0_1.23-2_arm64.deb ... 545s Unpacking libdeflate0:arm64 (1.23-2) ... 545s Selecting previously unselected package libgomp1:arm64. 545s Preparing to unpack .../24-libgomp1_15.2.0-12ubuntu1_arm64.deb ... 545s Unpacking libgomp1:arm64 (15.2.0-12ubuntu1) ... 546s Selecting previously unselected package libgraphite2-3:arm64. 546s Preparing to unpack .../25-libgraphite2-3_1.3.14-11ubuntu1_arm64.deb ... 546s Unpacking libgraphite2-3:arm64 (1.3.14-11ubuntu1) ... 546s Selecting previously unselected package libharfbuzz0b:arm64. 546s Preparing to unpack .../26-libharfbuzz0b_12.3.2-1_arm64.deb ... 546s Unpacking libharfbuzz0b:arm64 (12.3.2-1) ... 546s Selecting previously unselected package libimagequant0:arm64. 546s Preparing to unpack .../27-libimagequant0_2.18.0-1build1_arm64.deb ... 546s Unpacking libimagequant0:arm64 (2.18.0-1build1) ... 546s Selecting previously unselected package libjpeg-turbo8:arm64. 546s Preparing to unpack .../28-libjpeg-turbo8_2.1.5-4ubuntu2_arm64.deb ... 546s Unpacking libjpeg-turbo8:arm64 (2.1.5-4ubuntu2) ... 546s Selecting previously unselected package libjpeg8:arm64. 546s Preparing to unpack .../29-libjpeg8_8c-2ubuntu11_arm64.deb ... 546s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 546s Selecting previously unselected package liblcms2-2:arm64. 546s Preparing to unpack .../30-liblcms2-2_2.17-1_arm64.deb ... 546s Unpacking liblcms2-2:arm64 (2.17-1) ... 546s Selecting previously unselected package liblerc4:arm64. 546s Preparing to unpack .../31-liblerc4_4.0.0+ds-5ubuntu2_arm64.deb ... 546s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu2) ... 546s Selecting previously unselected package libmbedcrypto16:arm64. 546s Preparing to unpack .../32-libmbedcrypto16_3.6.5-0.1ubuntu2_arm64.deb ... 546s Unpacking libmbedcrypto16:arm64 (3.6.5-0.1ubuntu2) ... 546s Selecting previously unselected package libmbedx509-7:arm64. 546s Preparing to unpack .../33-libmbedx509-7_3.6.5-0.1ubuntu2_arm64.deb ... 546s Unpacking libmbedx509-7:arm64 (3.6.5-0.1ubuntu2) ... 546s Selecting previously unselected package libmbedtls21:arm64. 546s Preparing to unpack .../34-libmbedtls21_3.6.5-0.1ubuntu2_arm64.deb ... 546s Unpacking libmbedtls21:arm64 (3.6.5-0.1ubuntu2) ... 546s Selecting previously unselected package ncbi-vdb-data. 546s Preparing to unpack .../35-ncbi-vdb-data_3.2.1+dfsg-2build1_all.deb ... 546s Unpacking ncbi-vdb-data (3.2.1+dfsg-2build1) ... 546s Selecting previously unselected package libncbi-vdb3:arm64. 546s Preparing to unpack .../36-libncbi-vdb3_3.2.1+dfsg-2build1_arm64.deb ... 546s Unpacking libncbi-vdb3:arm64 (3.2.1+dfsg-2build1) ... 546s Selecting previously unselected package libpython3.14-stdlib:arm64. 546s Preparing to unpack .../37-libpython3.14-stdlib_3.14.2-1_arm64.deb ... 546s Unpacking libpython3.14-stdlib:arm64 (3.14.2-1) ... 546s Selecting previously unselected package libqhull-r8.0:arm64. 546s Preparing to unpack .../38-libqhull-r8.0_2020.2-8_arm64.deb ... 546s Unpacking libqhull-r8.0:arm64 (2020.2-8) ... 546s Selecting previously unselected package libraqm0:arm64. 546s Preparing to unpack .../39-libraqm0_0.10.3-1_arm64.deb ... 546s Unpacking libraqm0:arm64 (0.10.3-1) ... 546s Selecting previously unselected package libsharpyuv0:arm64. 546s Preparing to unpack .../40-libsharpyuv0_1.5.0-0.1build1_arm64.deb ... 546s Unpacking libsharpyuv0:arm64 (1.5.0-0.1build1) ... 546s Selecting previously unselected package libtcl8.6:arm64. 546s Preparing to unpack .../41-libtcl8.6_8.6.17+dfsg-1build1_arm64.deb ... 546s Unpacking libtcl8.6:arm64 (8.6.17+dfsg-1build1) ... 546s Selecting previously unselected package libjbig0:arm64. 546s Preparing to unpack .../42-libjbig0_2.1-6.1ubuntu3_arm64.deb ... 546s Unpacking libjbig0:arm64 (2.1-6.1ubuntu3) ... 546s Selecting previously unselected package libwebp7:arm64. 546s Preparing to unpack .../43-libwebp7_1.5.0-0.1build1_arm64.deb ... 546s Unpacking libwebp7:arm64 (1.5.0-0.1build1) ... 546s Selecting previously unselected package libtiff6:arm64. 546s Preparing to unpack .../44-libtiff6_4.7.0-3ubuntu3_arm64.deb ... 546s Unpacking libtiff6:arm64 (4.7.0-3ubuntu3) ... 546s Selecting previously unselected package libxft2:arm64. 546s Preparing to unpack .../45-libxft2_2.3.6-1build2_arm64.deb ... 546s Unpacking libxft2:arm64 (2.3.6-1build2) ... 546s Selecting previously unselected package libxss1:arm64. 546s Preparing to unpack .../46-libxss1_1%3a1.2.3-1build4_arm64.deb ... 546s Unpacking libxss1:arm64 (1:1.2.3-1build4) ... 546s Selecting previously unselected package libtk8.6:arm64. 546s Preparing to unpack .../47-libtk8.6_8.6.17-1_arm64.deb ... 546s Unpacking libtk8.6:arm64 (8.6.17-1) ... 546s Selecting previously unselected package libwebpdemux2:arm64. 546s Preparing to unpack .../48-libwebpdemux2_1.5.0-0.1build1_arm64.deb ... 546s Unpacking libwebpdemux2:arm64 (1.5.0-0.1build1) ... 546s Selecting previously unselected package libwebpmux3:arm64. 547s Preparing to unpack .../49-libwebpmux3_1.5.0-0.1build1_arm64.deb ... 547s Unpacking libwebpmux3:arm64 (1.5.0-0.1build1) ... 547s Selecting previously unselected package libxslt1.1:arm64. 547s Preparing to unpack .../50-libxslt1.1_1.1.43-0.3_arm64.deb ... 547s Unpacking libxslt1.1:arm64 (1.1.43-0.3) ... 547s Selecting previously unselected package libzopfli1. 547s Preparing to unpack .../51-libzopfli1_1.0.3-3build1_arm64.deb ... 547s Unpacking libzopfli1 (1.0.3-3build1) ... 547s Selecting previously unselected package mummer. 547s Preparing to unpack .../52-mummer_3.23+dfsg-8build1_arm64.deb ... 547s Unpacking mummer (3.23+dfsg-8build1) ... 547s Selecting previously unselected package ncbi-data. 547s Preparing to unpack .../53-ncbi-data_6.1.20170106+dfsg2-7_all.deb ... 547s Unpacking ncbi-data (6.1.20170106+dfsg2-7) ... 547s Selecting previously unselected package ncbi-blast+. 547s Preparing to unpack .../54-ncbi-blast+_2.16.0+ds-7_arm64.deb ... 547s Unpacking ncbi-blast+ (2.16.0+ds-7) ... 547s Selecting previously unselected package python-matplotlib-data. 547s Preparing to unpack .../55-python-matplotlib-data_3.10.7+dfsg1-1_all.deb ... 547s Unpacking python-matplotlib-data (3.10.7+dfsg1-1) ... 547s Selecting previously unselected package python3.14. 547s Preparing to unpack .../56-python3.14_3.14.2-1_arm64.deb ... 547s Unpacking python3.14 (3.14.2-1) ... 547s Selecting previously unselected package python3-all. 547s Preparing to unpack .../57-python3-all_3.13.9-3_arm64.deb ... 547s Unpacking python3-all (3.13.9-3) ... 547s Selecting previously unselected package python3-charset-normalizer. 547s Preparing to unpack .../58-python3-charset-normalizer_3.4.4-2_arm64.deb ... 547s Unpacking python3-charset-normalizer (3.4.4-2) ... 547s Selecting previously unselected package python3.13-tk. 547s Preparing to unpack .../59-python3.13-tk_3.13.11-1_arm64.deb ... 547s Unpacking python3.13-tk (3.13.11-1) ... 547s Selecting previously unselected package python3.14-tk. 547s Preparing to unpack .../60-python3.14-tk_3.14.2-1_arm64.deb ... 547s Unpacking python3.14-tk (3.14.2-1) ... 548s Selecting previously unselected package python3-tk. 548s Preparing to unpack .../61-python3-tk_3.13.9-3_arm64.deb ... 548s Unpacking python3-tk (3.13.9-3) ... 548s Selecting previously unselected package python3-pil.imagetk:arm64. 548s Preparing to unpack .../62-python3-pil.imagetk_12.0.0-1ubuntu1_arm64.deb ... 548s Unpacking python3-pil.imagetk:arm64 (12.0.0-1ubuntu1) ... 548s Selecting previously unselected package libopenjp2-7:arm64. 548s Preparing to unpack .../63-libopenjp2-7_2.5.4-1_arm64.deb ... 548s Unpacking libopenjp2-7:arm64 (2.5.4-1) ... 548s Selecting previously unselected package python3-pil:arm64. 548s Preparing to unpack .../64-python3-pil_12.0.0-1ubuntu1_arm64.deb ... 548s Unpacking python3-pil:arm64 (12.0.0-1ubuntu1) ... 548s Selecting previously unselected package python3-cairo. 548s Preparing to unpack .../65-python3-cairo_1.27.0-2build1_arm64.deb ... 548s Unpacking python3-cairo (1.27.0-2build1) ... 548s Selecting previously unselected package python3-freetype. 548s Preparing to unpack .../66-python3-freetype_2.5.1-2_all.deb ... 548s Unpacking python3-freetype (2.5.1-2) ... 548s Selecting previously unselected package python3-rlpycairo. 548s Preparing to unpack .../67-python3-rlpycairo_0.3.0-4_all.deb ... 548s Unpacking python3-rlpycairo (0.3.0-4) ... 548s Selecting previously unselected package python3-reportlab. 548s Preparing to unpack .../68-python3-reportlab_4.4.9-1_all.deb ... 548s Unpacking python3-reportlab (4.4.9-1) ... 548s Selecting previously unselected package sgml-base. 548s Preparing to unpack .../69-sgml-base_1.31+nmu1_all.deb ... 548s Unpacking sgml-base (1.31+nmu1) ... 548s Selecting previously unselected package xml-core. 548s Preparing to unpack .../70-xml-core_0.19build1_all.deb ... 548s Unpacking xml-core (0.19build1) ... 548s Selecting previously unselected package w3c-sgml-lib. 548s Preparing to unpack .../71-w3c-sgml-lib_1.3-3build1_all.deb ... 548s Unpacking w3c-sgml-lib (1.3-3build1) ... 548s Selecting previously unselected package python3-biopython. 548s Preparing to unpack .../72-python3-biopython_1.86+dfsg-1_arm64.deb ... 548s Unpacking python3-biopython (1.86+dfsg-1) ... 548s Selecting previously unselected package python3-brotli. 548s Preparing to unpack .../73-python3-brotli_1.1.0-2build6_arm64.deb ... 548s Unpacking python3-brotli (1.1.0-2build6) ... 548s Selecting previously unselected package python3-contourpy. 548s Preparing to unpack .../74-python3-contourpy_1.3.3-1_arm64.deb ... 548s Unpacking python3-contourpy (1.3.3-1) ... 548s Selecting previously unselected package python3-cycler. 548s Preparing to unpack .../75-python3-cycler_0.12.1-2_all.deb ... 548s Unpacking python3-cycler (0.12.1-2) ... 548s Selecting previously unselected package python3-decorator. 548s Preparing to unpack .../76-python3-decorator_5.2.1-2_all.deb ... 548s Unpacking python3-decorator (5.2.1-2) ... 548s Selecting previously unselected package python3-lxml:arm64. 548s Preparing to unpack .../77-python3-lxml_6.0.2-1_arm64.deb ... 548s Unpacking python3-lxml:arm64 (6.0.2-1) ... 548s Selecting previously unselected package python3-lz4. 548s Preparing to unpack .../78-python3-lz4_4.4.5+dfsg-1_arm64.deb ... 548s Unpacking python3-lz4 (4.4.5+dfsg-1) ... 548s Selecting previously unselected package python3-scipy. 548s Preparing to unpack .../79-python3-scipy_1.16.3-4_arm64.deb ... 548s Unpacking python3-scipy (1.16.3-4) ... 549s Selecting previously unselected package python3-mpmath. 549s Preparing to unpack .../80-python3-mpmath_1.3.0-2_all.deb ... 549s Unpacking python3-mpmath (1.3.0-2) ... 549s Selecting previously unselected package python3-sympy. 549s Preparing to unpack .../81-python3-sympy_1.14.0-2_all.deb ... 549s Unpacking python3-sympy (1.14.0-2) ... 549s Selecting previously unselected package python3-ufolib2. 549s Preparing to unpack .../82-python3-ufolib2_0.18.1+dfsg1-1_all.deb ... 549s Unpacking python3-ufolib2 (0.18.1+dfsg1-1) ... 549s Selecting previously unselected package python3-zopfli. 549s Preparing to unpack .../83-python3-zopfli_0.4.0-1_arm64.deb ... 549s Unpacking python3-zopfli (0.4.0-1) ... 549s Selecting previously unselected package unicode-data. 549s Preparing to unpack .../84-unicode-data_16.0.0-1build1_all.deb ... 549s Unpacking unicode-data (16.0.0-1build1) ... 550s Selecting previously unselected package python3-fonttools. 550s Preparing to unpack .../85-python3-fonttools_4.61.1-3_arm64.deb ... 550s Unpacking python3-fonttools (4.61.1-3) ... 550s Selecting previously unselected package python3-kiwisolver. 550s Preparing to unpack .../86-python3-kiwisolver_1.4.10~rc0-1_arm64.deb ... 550s Unpacking python3-kiwisolver (1.4.10~rc0-1) ... 550s Selecting previously unselected package python3-matplotlib. 550s Preparing to unpack .../87-python3-matplotlib_3.10.7+dfsg1-1_arm64.deb ... 550s Unpacking python3-matplotlib (3.10.7+dfsg1-1) ... 550s Selecting previously unselected package python3-pytz. 550s Preparing to unpack .../88-python3-pytz_2025.2-5_all.deb ... 550s Unpacking python3-pytz (2025.2-5) ... 550s Selecting previously unselected package python3-pandas-lib:arm64. 550s Preparing to unpack .../89-python3-pandas-lib_2.3.3+dfsg-3_arm64.deb ... 550s Unpacking python3-pandas-lib:arm64 (2.3.3+dfsg-3) ... 550s Selecting previously unselected package python3-pandas. 550s Preparing to unpack .../90-python3-pandas_2.3.3+dfsg-3_all.deb ... 550s Unpacking python3-pandas (2.3.3+dfsg-3) ... 551s Selecting previously unselected package python3-seaborn. 551s Preparing to unpack .../91-python3-seaborn_0.13.2-6_all.deb ... 551s Unpacking python3-seaborn (0.13.2-6) ... 551s Selecting previously unselected package python3-pyani. 551s Preparing to unpack .../92-python3-pyani_0.2.13-1_arm64.deb ... 551s Unpacking python3-pyani (0.2.13-1) ... 551s Setting up libgraphite2-3:arm64 (1.3.14-11ubuntu1) ... 551s Setting up liblcms2-2:arm64 (2.17-1) ... 551s Setting up ncbi-data (6.1.20170106+dfsg2-7) ... 551s Setting up libpixman-1-0:arm64 (0.46.4-1) ... 551s Setting up libsharpyuv0:arm64 (1.5.0-0.1build1) ... 551s Setting up liblerc4:arm64 (4.0.0+ds-5ubuntu2) ... 551s Setting up libxrender1:arm64 (1:0.9.12-1) ... 551s Setting up python3-lz4 (4.4.5+dfsg-1) ... 551s Setting up libxcb-render0:arm64 (1.17.0-2ubuntu1) ... 551s Setting up python3-charset-normalizer (3.4.4-2) ... 551s Setting up fonts-lyx (2.5.0~RC2-3) ... 551s Setting up libpython3.14-minimal:arm64 (3.14.2-1) ... 551s Setting up x11-common (1:7.7+24ubuntu1) ... 552s Setting up libdeflate0:arm64 (1.23-2) ... 552s Setting up libqhull-r8.0:arm64 (2020.2-8) ... 552s Setting up python3-pytz (2025.2-5) ... 552s Setting up libxcb-shm0:arm64 (1.17.0-2ubuntu1) ... 552s Setting up libgomp1:arm64 (15.2.0-12ubuntu1) ... 552s Setting up python3-freetype (2.5.1-2) ... 552s Setting up libjbig0:arm64 (2.1-6.1ubuntu3) ... 552s Setting up unicode-data (16.0.0-1build1) ... 552s Setting up python3-decorator (5.2.1-2) ... 552s Setting up libfontenc1:arm64 (1:1.1.8-1build2) ... 552s Setting up libblas3:arm64 (3.12.1-7ubuntu1) ... 552s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 552s Setting up libzopfli1 (1.0.3-3build1) ... 552s Setting up python3-brotli (1.1.0-2build6) ... 553s Setting up xfonts-encodings (1:1.0.5-0ubuntu3) ... 553s Setting up python3-cycler (0.12.1-2) ... 553s Setting up libimagequant0:arm64 (2.18.0-1build1) ... 553s Setting up fonts-dejavu-mono (2.37-8build1) ... 553s Setting up python3-kiwisolver (1.4.10~rc0-1) ... 553s Setting up python3-numpy-dev:arm64 (1:2.3.5+ds-3) ... 553s Setting up libtcl8.6:arm64 (8.6.17+dfsg-1build1) ... 553s Setting up fonts-dejavu-core (2.37-8build1) ... 553s Setting up libjpeg-turbo8:arm64 (2.1.5-4ubuntu2) ... 553s Setting up libgfortran5:arm64 (15.2.0-12ubuntu1) ... 553s Setting up libwebp7:arm64 (1.5.0-0.1build1) ... 553s Setting up fonts-dejavu-extra (2.37-8build1) ... 553s Setting up libxslt1.1:arm64 (1.1.43-0.3) ... 553s Setting up mummer (3.23+dfsg-8build1) ... 553s Setting up libopenjp2-7:arm64 (2.5.4-1) ... 553s Setting up libharfbuzz0b:arm64 (12.3.2-1) ... 553s Setting up ncbi-vdb-data (3.2.1+dfsg-2build1) ... 553s Setting up sgml-base (1.31+nmu1) ... 553s Setting up libxss1:arm64 (1:1.2.3-1build4) ... 553s Setting up libmbedcrypto16:arm64 (3.6.5-0.1ubuntu2) ... 553s Setting up python3-mpmath (1.3.0-2) ... 554s Setting up python-matplotlib-data (3.10.7+dfsg1-1) ... 554s Setting up libwebpmux3:arm64 (1.5.0-0.1build1) ... 554s Setting up python3.14-minimal (3.14.2-1) ... 555s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 555s Setting up python3-sympy (1.14.0-2) ... 567s /usr/lib/python3/dist-packages/sympy/testing/runtests.py:283: SyntaxWarning: 'return' in a 'finally' block 567s return p.returncode 567s Setting up liblapack3:arm64 (3.12.1-7ubuntu1) ... 567s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 567s Setting up libpython3.14-stdlib:arm64 (3.14.2-1) ... 567s Setting up fontconfig-config (2.17.1-3ubuntu1) ... 567s Setting up libwebpdemux2:arm64 (1.5.0-0.1build1) ... 567s Setting up xfonts-utils (1:7.7+7build1) ... 567s Setting up python3-zopfli (0.4.0-1) ... 567s Setting up libmbedx509-7:arm64 (3.6.5-0.1ubuntu2) ... 567s Setting up libraqm0:arm64 (0.10.3-1) ... 567s Setting up python3-numpy (1:2.3.5+ds-3) ... 571s Setting up libmbedtls21:arm64 (3.6.5-0.1ubuntu2) ... 571s Setting up python3-lxml:arm64 (6.0.2-1) ... 571s Setting up libtiff6:arm64 (4.7.0-3ubuntu3) ... 571s Setting up xml-core (0.19build1) ... 571s Setting up python3-contourpy (1.3.3-1) ... 572s Setting up libfontconfig1:arm64 (2.17.1-3ubuntu1) ... 572s Setting up python3.14 (3.14.2-1) ... 573s Setting up libxft2:arm64 (2.3.6-1build2) ... 573s Setting up python3-scipy (1.16.3-4) ... 580s Setting up libtk8.6:arm64 (8.6.17-1) ... 580s Setting up python3-pandas-lib:arm64 (2.3.3+dfsg-3) ... 580s Setting up libncbi-vdb3:arm64 (3.2.1+dfsg-2build1) ... 580s Setting up python3-all (3.13.9-3) ... 580s Setting up fonts-urw-base35 (20200910-8build1) ... 580s Setting up libcairo2:arm64 (1.18.4-3) ... 580s Setting up python3.13-tk (3.13.11-1) ... 580s Setting up ncbi-blast+ (2.16.0+ds-7) ... 580s Setting up python3-pil:arm64 (12.0.0-1ubuntu1) ... 581s Setting up python3-pandas (2.3.3+dfsg-3) ... 590s Setting up python3.14-tk (3.14.2-1) ... 590s Setting up python3-cairo (1.27.0-2build1) ... 590s Setting up python3-tk (3.13.9-3) ... 590s Setting up python3-pil.imagetk:arm64 (12.0.0-1ubuntu1) ... 590s Setting up python3-rlpycairo (0.3.0-4) ... 591s Setting up python3-reportlab (4.4.9-1) ... 592s Setting up python3-fonttools (4.61.1-3) ... 594s Setting up python3-ufolib2 (0.18.1+dfsg1-1) ... 594s Setting up python3-matplotlib (3.10.7+dfsg1-1) ... 597s Setting up python3-seaborn (0.13.2-6) ... 598s Processing triggers for systemd (259-1ubuntu3) ... 598s Processing triggers for man-db (2.13.1-1) ... 598s Processing triggers for libc-bin (2.42-2ubuntu4) ... 598s Processing triggers for sgml-base (1.31+nmu1) ... 599s Setting up w3c-sgml-lib (1.3-3build1) ... 624s Setting up python3-biopython (1.86+dfsg-1) ... 625s Setting up python3-pyani (0.2.13-1) ... 631s autopkgtest [23:27:08]: test autodep8-python3: set -e ; for py in $(py3versions -r 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -c "import pyani; print(pyani)" ; done 631s autopkgtest [23:27:08]: test autodep8-python3: [----------------------- 631s Testing with python3.14: 631s 631s Testing with python3.13: 631s 632s autopkgtest [23:27:09]: test autodep8-python3: -----------------------] 632s autopkgtest [23:27:09]: test autodep8-python3: - - - - - - - - - - results - - - - - - - - - - 632s autodep8-python3 PASS (superficial) 632s autopkgtest [23:27:09]: @@@@@@@@@@@@@@@@@@@@ summary 632s run-unit-test PASS 632s autodep8-python3 PASS (superficial)