0s autopkgtest [17:29:50]: starting date and time: 2025-11-17 17:29:50+0000 0s autopkgtest [17:29:50]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [17:29:50]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work._79aohxp/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:pytest --apt-upgrade python-hdf5storage --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=pytest/8.4.2-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-arm64-14.secgroup --name adt-resolute-arm64-python-hdf5storage-20251117-172949-juju-7f2275-prod-proposed-migration-environment-15-c1ff5a1d-dba3-47b1-9129-70f4871b38df --image adt/ubuntu-resolute-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 3s Creating nova instance adt-resolute-arm64-python-hdf5storage-20251117-172949-juju-7f2275-prod-proposed-migration-environment-15-c1ff5a1d-dba3-47b1-9129-70f4871b38df from image adt/ubuntu-resolute-arm64-server-20251117.img (UUID 1cd33fbb-18df-4c5a-b8f0-2dcb25269485)... 79s autopkgtest [17:31:09]: testbed dpkg architecture: arm64 80s autopkgtest [17:31:10]: testbed apt version: 3.1.11 80s autopkgtest [17:31:10]: @@@@@@@@@@@@@@@@@@@@ test bed setup 80s autopkgtest [17:31:10]: testbed release detected to be: None 81s autopkgtest [17:31:11]: updating testbed package index (apt update) 82s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [87.8 kB] 82s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 82s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 82s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 82s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [779 kB] 83s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [22.9 kB] 83s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [73.2 kB] 83s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [9852 B] 83s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 Packages [143 kB] 83s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 c-n-f Metadata [3224 B] 83s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 Packages [107 kB] 83s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 c-n-f Metadata [324 B] 83s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 Packages [517 kB] 83s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 c-n-f Metadata [17.1 kB] 83s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 Packages [12.5 kB] 83s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 c-n-f Metadata [576 B] 85s Fetched 1774 kB in 1s (1364 kB/s) 87s Reading package lists... 88s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 88s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 88s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 88s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 90s Reading package lists... 90s Reading package lists... 91s Building dependency tree... 91s Reading state information... 91s Calculating upgrade... 92s The following packages will be upgraded: 92s apt libapt-pkg7.0 libcrypt-dev libcrypt1 usbutils 92s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 92s Need to get 2764 kB of archives. 92s After this operation, 104 kB of additional disk space will be used. 92s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 libcrypt-dev arm64 1:4.5.1-1 [123 kB] 92s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 libcrypt1 arm64 1:4.5.1-1 [88.3 kB] 92s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 libapt-pkg7.0 arm64 3.1.12 [1063 kB] 93s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 apt arm64 3.1.12 [1407 kB] 93s Get:5 http://ftpmaster.internal/ubuntu resolute/main arm64 usbutils arm64 1:019-1 [81.7 kB] 94s dpkg-preconfigure: unable to re-open stdin: No such file or directory 94s Fetched 2764 kB in 1s (2842 kB/s) 95s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 88137 files and directories currently installed.) 95s Preparing to unpack .../libcrypt-dev_1%3a4.5.1-1_arm64.deb ... 95s Unpacking libcrypt-dev:arm64 (1:4.5.1-1) over (1:4.4.38-1build1) ... 95s Preparing to unpack .../libcrypt1_1%3a4.5.1-1_arm64.deb ... 95s Unpacking libcrypt1:arm64 (1:4.5.1-1) over (1:4.4.38-1build1) ... 95s Setting up libcrypt1:arm64 (1:4.5.1-1) ... 95s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 88137 files and directories currently installed.) 95s Preparing to unpack .../libapt-pkg7.0_3.1.12_arm64.deb ... 95s Unpacking libapt-pkg7.0:arm64 (3.1.12) over (3.1.11) ... 96s Preparing to unpack .../archives/apt_3.1.12_arm64.deb ... 96s Unpacking apt (3.1.12) over (3.1.11) ... 97s Preparing to unpack .../usbutils_1%3a019-1_arm64.deb ... 97s Unpacking usbutils (1:019-1) over (1:018-2) ... 97s Setting up usbutils (1:019-1) ... 97s Setting up libcrypt-dev:arm64 (1:4.5.1-1) ... 97s Setting up libapt-pkg7.0:arm64 (3.1.12) ... 97s Setting up apt (3.1.12) ... 98s Processing triggers for man-db (2.13.1-1) ... 102s Processing triggers for libc-bin (2.42-2ubuntu2) ... 102s autopkgtest [17:31:32]: upgrading testbed (apt dist-upgrade and autopurge) 104s Reading package lists... 105s Building dependency tree... 105s Reading state information... 105s Calculating upgrade... 106s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 107s Reading package lists... 107s Building dependency tree... 107s Reading state information... 107s Solving dependencies... 108s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 108s autopkgtest [17:31:38]: rebooting testbed after setup commands that affected boot 149s autopkgtest [17:32:19]: testbed running kernel: Linux 6.17.0-5-generic #5-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 22 09:50:31 UTC 2025 152s autopkgtest [17:32:22]: @@@@@@@@@@@@@@@@@@@@ apt-source python-hdf5storage 156s Get:1 http://ftpmaster.internal/ubuntu resolute/universe python-hdf5storage 0.1.19-4 (dsc) [2495 B] 156s Get:2 http://ftpmaster.internal/ubuntu resolute/universe python-hdf5storage 0.1.19-4 (tar) [92.3 kB] 156s Get:3 http://ftpmaster.internal/ubuntu resolute/universe python-hdf5storage 0.1.19-4 (diff) [7740 B] 156s gpgv: Signature made Mon Feb 3 17:09:51 2025 UTC 156s gpgv: using RSA key 8F6DE104377F3B11E741748731F3144544A1741A 156s gpgv: issuer "tchet@debian.org" 156s gpgv: Can't check signature: No public key 156s dpkg-source: warning: cannot verify inline signature for ./python-hdf5storage_0.1.19-4.dsc: no acceptable signature found 156s autopkgtest [17:32:26]: testing package python-hdf5storage version 0.1.19-4 157s autopkgtest [17:32:27]: build not needed 157s autopkgtest [17:32:27]: test command1: preparing testbed 158s Reading package lists... 158s Building dependency tree... 158s Reading state information... 158s Solving dependencies... 159s The following NEW packages will be installed: 159s libaec0 libblas3 libgfortran5 libhdf5-310 libhdf5-hl-310 liblapack3 liblzf1 159s libsz2 python3-decorator python3-h5py python3-h5py-serial 159s python3-hdf5storage python3-iniconfig python3-numpy python3-numpy-dev 159s python3-pluggy python3-pytest python3-scipy 159s 0 upgraded, 18 newly installed, 0 to remove and 0 not upgraded. 159s Need to get 28.7 MB of archives. 159s After this operation, 152 MB of additional disk space will be used. 159s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-numpy-dev arm64 1:2.2.4+ds-1ubuntu1 [146 kB] 159s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 libblas3 arm64 3.12.1-7 [181 kB] 159s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 libgfortran5 arm64 15.2.0-7ubuntu1 [450 kB] 160s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 liblapack3 arm64 3.12.1-7 [2300 kB] 160s Get:5 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-numpy arm64 1:2.2.4+ds-1ubuntu1 [3986 kB] 160s Get:6 http://ftpmaster.internal/ubuntu resolute/universe arm64 libaec0 arm64 1.1.4-2 [22.2 kB] 160s Get:7 http://ftpmaster.internal/ubuntu resolute/universe arm64 libsz2 arm64 1.1.4-2 [5258 B] 160s Get:8 http://ftpmaster.internal/ubuntu resolute/universe arm64 libhdf5-310 arm64 1.14.5+repack-4 [1286 kB] 160s Get:9 http://ftpmaster.internal/ubuntu resolute/universe arm64 libhdf5-hl-310 arm64 1.14.5+repack-4 [58.9 kB] 160s Get:10 http://ftpmaster.internal/ubuntu resolute/universe arm64 liblzf1 arm64 3.6-4 [7426 B] 160s Get:11 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-decorator all 5.2.1-2 [28.1 kB] 160s Get:12 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-h5py-serial arm64 3.13.0-1ubuntu1 [1123 kB] 160s Get:13 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-h5py all 3.13.0-1ubuntu1 [8230 B] 160s Get:14 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-hdf5storage all 0.1.19-4 [45.0 kB] 160s Get:15 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-iniconfig all 2.1.0-1 [6840 B] 160s Get:16 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pluggy all 1.6.0-1 [21.0 kB] 160s Get:17 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 python3-pytest all 8.4.2-1 [268 kB] 160s Get:18 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-scipy arm64 1.15.3-1ubuntu1 [18.7 MB] 161s Fetched 28.7 MB in 2s (16.8 MB/s) 161s Selecting previously unselected package python3-numpy-dev:arm64. 162s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 88137 files and directories currently installed.) 162s Preparing to unpack .../00-python3-numpy-dev_1%3a2.2.4+ds-1ubuntu1_arm64.deb ... 162s Unpacking python3-numpy-dev:arm64 (1:2.2.4+ds-1ubuntu1) ... 162s Selecting previously unselected package libblas3:arm64. 162s Preparing to unpack .../01-libblas3_3.12.1-7_arm64.deb ... 162s Unpacking libblas3:arm64 (3.12.1-7) ... 162s Selecting previously unselected package libgfortran5:arm64. 162s Preparing to unpack .../02-libgfortran5_15.2.0-7ubuntu1_arm64.deb ... 162s Unpacking libgfortran5:arm64 (15.2.0-7ubuntu1) ... 162s Selecting previously unselected package liblapack3:arm64. 162s Preparing to unpack .../03-liblapack3_3.12.1-7_arm64.deb ... 162s Unpacking liblapack3:arm64 (3.12.1-7) ... 162s Selecting previously unselected package python3-numpy. 162s Preparing to unpack .../04-python3-numpy_1%3a2.2.4+ds-1ubuntu1_arm64.deb ... 162s Unpacking python3-numpy (1:2.2.4+ds-1ubuntu1) ... 163s Selecting previously unselected package libaec0:arm64. 163s Preparing to unpack .../05-libaec0_1.1.4-2_arm64.deb ... 163s Unpacking libaec0:arm64 (1.1.4-2) ... 163s Selecting previously unselected package libsz2:arm64. 163s Preparing to unpack .../06-libsz2_1.1.4-2_arm64.deb ... 163s Unpacking libsz2:arm64 (1.1.4-2) ... 163s Selecting previously unselected package libhdf5-310:arm64. 163s Preparing to unpack .../07-libhdf5-310_1.14.5+repack-4_arm64.deb ... 163s Unpacking libhdf5-310:arm64 (1.14.5+repack-4) ... 163s Selecting previously unselected package libhdf5-hl-310:arm64. 163s Preparing to unpack .../08-libhdf5-hl-310_1.14.5+repack-4_arm64.deb ... 163s Unpacking libhdf5-hl-310:arm64 (1.14.5+repack-4) ... 163s Selecting previously unselected package liblzf1:arm64. 163s Preparing to unpack .../09-liblzf1_3.6-4_arm64.deb ... 163s Unpacking liblzf1:arm64 (3.6-4) ... 163s Selecting previously unselected package python3-decorator. 163s Preparing to unpack .../10-python3-decorator_5.2.1-2_all.deb ... 163s Unpacking python3-decorator (5.2.1-2) ... 164s Selecting previously unselected package python3-h5py-serial. 164s Preparing to unpack .../11-python3-h5py-serial_3.13.0-1ubuntu1_arm64.deb ... 164s Unpacking python3-h5py-serial (3.13.0-1ubuntu1) ... 164s Selecting previously unselected package python3-h5py. 164s Preparing to unpack .../12-python3-h5py_3.13.0-1ubuntu1_all.deb ... 164s Unpacking python3-h5py (3.13.0-1ubuntu1) ... 164s Selecting previously unselected package python3-hdf5storage. 164s Preparing to unpack .../13-python3-hdf5storage_0.1.19-4_all.deb ... 164s Unpacking python3-hdf5storage (0.1.19-4) ... 164s Selecting previously unselected package python3-iniconfig. 164s Preparing to unpack .../14-python3-iniconfig_2.1.0-1_all.deb ... 164s Unpacking python3-iniconfig (2.1.0-1) ... 164s Selecting previously unselected package python3-pluggy. 164s Preparing to unpack .../15-python3-pluggy_1.6.0-1_all.deb ... 164s Unpacking python3-pluggy (1.6.0-1) ... 164s Selecting previously unselected package python3-pytest. 164s Preparing to unpack .../16-python3-pytest_8.4.2-1_all.deb ... 164s Unpacking python3-pytest (8.4.2-1) ... 164s Selecting previously unselected package python3-scipy. 165s Preparing to unpack .../17-python3-scipy_1.15.3-1ubuntu1_arm64.deb ... 165s Unpacking python3-scipy (1.15.3-1ubuntu1) ... 166s Setting up python3-iniconfig (2.1.0-1) ... 166s Setting up libaec0:arm64 (1.1.4-2) ... 166s Setting up python3-decorator (5.2.1-2) ... 166s Setting up libblas3:arm64 (3.12.1-7) ... 166s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 166s Setting up liblzf1:arm64 (3.6-4) ... 166s Setting up python3-numpy-dev:arm64 (1:2.2.4+ds-1ubuntu1) ... 166s Setting up libgfortran5:arm64 (15.2.0-7ubuntu1) ... 166s Setting up python3-pluggy (1.6.0-1) ... 166s Setting up libsz2:arm64 (1.1.4-2) ... 166s Setting up liblapack3:arm64 (3.12.1-7) ... 166s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 166s Setting up python3-pytest (8.4.2-1) ... 167s Setting up python3-numpy (1:2.2.4+ds-1ubuntu1) ... 171s Setting up libhdf5-310:arm64 (1.14.5+repack-4) ... 171s Setting up libhdf5-hl-310:arm64 (1.14.5+repack-4) ... 171s Setting up python3-scipy (1.15.3-1ubuntu1) ... 178s Setting up python3-h5py-serial (3.13.0-1ubuntu1) ... 178s Setting up python3-h5py (3.13.0-1ubuntu1) ... 178s Setting up python3-hdf5storage (0.1.19-4) ... 179s Processing triggers for man-db (2.13.1-1) ... 180s Processing triggers for libc-bin (2.42-2ubuntu2) ... 182s autopkgtest [17:32:52]: test command1: cp -a ./tests $AUTOPKGTEST_TMP; cd $AUTOPKGTEST_TMP; python3 -m pytest -v tests 182s autopkgtest [17:32:52]: test command1: [----------------------- 183s ============================= test session starts ============================== 183s platform linux -- Python 3.13.9, pytest-8.4.2, pluggy-1.6.0 -- /usr/bin/python3 183s cachedir: .pytest_cache 183s rootdir: /tmp/autopkgtest.OlCKm8/autopkgtest_tmp 183s plugins: typeguard-4.4.2 184s collecting ... collected 5 items / 3 errors 184s 184s ==================================== ERRORS ==================================== 184s _________________ ERROR collecting tests/test_hdf5_filters.py __________________ 184s 'yield' keyword is allowed in fixtures, but not in tests (test_read_filtered_data) 184s _____________ ERROR collecting tests/test_matlab_compatibility.py ______________ 184s 'yield' keyword is allowed in fixtures, but not in tests (test_read_from_matlab) 184s ____________ ERROR collecting tests/test_string_utf16_conversion.py ____________ 184s 'yield' keyword is allowed in fixtures, but not in tests (test_conv_utf16) 184s =============================== warnings summary =============================== 184s ../../../usr/lib/python3/dist-packages/hdf5storage/utilities.py:44 184s /usr/lib/python3/dist-packages/hdf5storage/utilities.py:44: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html 184s from pkg_resources import parse_version 184s 184s tests/test_write_readback.py:68 184s /tmp/autopkgtest.OlCKm8/autopkgtest_tmp/tests/test_write_readback.py:68: PytestCollectionWarning: cannot collect test class 'TestPythonMatlabFormat' because it has a __init__ constructor (from: tests/test_write_readback.py) 184s class TestPythonMatlabFormat(object): 184s 184s tests/test_write_readback.py:669 184s /tmp/autopkgtest.OlCKm8/autopkgtest_tmp/tests/test_write_readback.py:669: PytestCollectionWarning: cannot collect test class 'TestPythonFormat' because it has a __init__ constructor (from: tests/test_write_readback.py) 184s class TestPythonFormat(TestPythonMatlabFormat): 184s 184s tests/test_write_readback.py:702 184s /tmp/autopkgtest.OlCKm8/autopkgtest_tmp/tests/test_write_readback.py:702: PytestCollectionWarning: cannot collect test class 'TestNoneFormat' because it has a __init__ constructor (from: tests/test_write_readback.py) 184s class TestNoneFormat(TestPythonMatlabFormat): 184s 184s tests/test_write_readback.py:741 184s /tmp/autopkgtest.OlCKm8/autopkgtest_tmp/tests/test_write_readback.py:741: PytestCollectionWarning: cannot collect test class 'TestMatlabFormat' because it has a __init__ constructor (from: tests/test_write_readback.py) 184s class TestMatlabFormat(TestPythonMatlabFormat): 184s 184s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 184s =========================== short test summary info ============================ 184s ERROR tests/test_hdf5_filters.py - Failed: 'yield' keyword is allowed in fixt... 184s ERROR tests/test_matlab_compatibility.py - Failed: 'yield' keyword is allowed... 184s ERROR tests/test_string_utf16_conversion.py - Failed: 'yield' keyword is allo... 184s !!!!!!!!!!!!!!!!!!! Interrupted: 3 errors during collection !!!!!!!!!!!!!!!!!!!! 184s ======================== 5 warnings, 3 errors in 0.92s ========================= 184s autopkgtest [17:32:54]: test command1: -----------------------] 185s command1 FAIL non-zero exit status 2 185s autopkgtest [17:32:55]: test command1: - - - - - - - - - - results - - - - - - - - - - 185s autopkgtest [17:32:55]: @@@@@@@@@@@@@@@@@@@@ summary 185s command1 FAIL non-zero exit status 2