0s autopkgtest [12:14:16]: starting date and time: 2025-11-17 12:14:16+0000 0s autopkgtest [12:14:16]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [12:14:16]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.ao_carh8/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:requests,src:python3-defaults --apt-upgrade python-bioframe --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=requests/2.32.5+dfsg-1ubuntu1 python3-defaults/3.13.7-2' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-11.secgroup --name adt-resolute-arm64-python-bioframe-20251117-121416-juju-7f2275-prod-proposed-migration-environment-2-0f9dce42-83d2-455a-ab34-0edd524ae5a6 --image adt/ubuntu-resolute-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 4s Creating nova instance adt-resolute-arm64-python-bioframe-20251117-121416-juju-7f2275-prod-proposed-migration-environment-2-0f9dce42-83d2-455a-ab34-0edd524ae5a6 from image adt/ubuntu-resolute-arm64-server-20251117.img (UUID 1cd33fbb-18df-4c5a-b8f0-2dcb25269485)... 69s autopkgtest [12:15:25]: testbed dpkg architecture: arm64 69s autopkgtest [12:15:25]: testbed apt version: 3.1.11 70s autopkgtest [12:15:26]: @@@@@@@@@@@@@@@@@@@@ test bed setup 70s autopkgtest [12:15:26]: testbed release detected to be: None 71s autopkgtest [12:15:27]: updating testbed package index (apt update) 71s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [87.8 kB] 71s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 71s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 72s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 72s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [22.9 kB] 72s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [9848 B] 72s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [81.1 kB] 72s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [868 kB] 72s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 Packages [149 kB] 72s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 c-n-f Metadata [3084 B] 72s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 Packages [107 kB] 72s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 c-n-f Metadata [324 B] 72s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 Packages [577 kB] 72s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 c-n-f Metadata [17.8 kB] 72s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 Packages [12.5 kB] 72s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 c-n-f Metadata [576 B] 73s Fetched 1938 kB in 1s (1636 kB/s) 74s Reading package lists... 75s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 75s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 75s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 75s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 76s Reading package lists... 76s Reading package lists... 76s Building dependency tree... 76s Reading state information... 76s Calculating upgrade... 77s The following packages will be upgraded: 77s libpython3-stdlib python3 python3-minimal python3-requests usbutils 77s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 77s Need to get 197 kB of archives. 77s After this operation, 1024 B of additional disk space will be used. 77s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 python3-minimal arm64 3.13.7-2 [27.8 kB] 77s Get:2 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 python3 arm64 3.13.7-2 [23.9 kB] 77s Get:3 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 libpython3-stdlib arm64 3.13.7-2 [10.6 kB] 77s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 usbutils arm64 1:019-1 [81.7 kB] 77s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 python3-requests all 2.32.5+dfsg-1ubuntu1 [53.1 kB] 77s dpkg-preconfigure: unable to re-open stdin: No such file or directory 78s Fetched 197 kB in 1s (393 kB/s) 78s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 88137 files and directories currently installed.) 78s Preparing to unpack .../python3-minimal_3.13.7-2_arm64.deb ... 78s Unpacking python3-minimal (3.13.7-2) over (3.13.7-1) ... 78s Setting up python3-minimal (3.13.7-2) ... 78s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 88137 files and directories currently installed.) 78s Preparing to unpack .../python3_3.13.7-2_arm64.deb ... 78s running python pre-rtupdate hooks for python3.13... 78s Unpacking python3 (3.13.7-2) over (3.13.7-1) ... 79s Preparing to unpack .../libpython3-stdlib_3.13.7-2_arm64.deb ... 79s Unpacking libpython3-stdlib:arm64 (3.13.7-2) over (3.13.7-1) ... 79s Preparing to unpack .../usbutils_1%3a019-1_arm64.deb ... 79s Unpacking usbutils (1:019-1) over (1:018-2) ... 79s Preparing to unpack .../python3-requests_2.32.5+dfsg-1ubuntu1_all.deb ... 79s Unpacking python3-requests (2.32.5+dfsg-1ubuntu1) over (2.32.3+dfsg-5ubuntu2) ... 79s Setting up usbutils (1:019-1) ... 79s Setting up libpython3-stdlib:arm64 (3.13.7-2) ... 79s Setting up python3 (3.13.7-2) ... 79s running python rtupdate hooks for python3.13... 79s running python post-rtupdate hooks for python3.13... 79s Setting up python3-requests (2.32.5+dfsg-1ubuntu1) ... 79s Processing triggers for man-db (2.13.1-1) ... 81s autopkgtest [12:15:37]: upgrading testbed (apt dist-upgrade and autopurge) 81s Reading package lists... 81s Building dependency tree... 81s Reading state information... 81s Calculating upgrade... 82s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 82s Reading package lists... 82s Building dependency tree... 82s Reading state information... 82s Solving dependencies... 83s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 85s autopkgtest [12:15:41]: testbed running kernel: Linux 6.17.0-5-generic #5-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 22 09:50:31 UTC 2025 85s autopkgtest [12:15:41]: @@@@@@@@@@@@@@@@@@@@ apt-source python-bioframe 87s Get:1 http://ftpmaster.internal/ubuntu resolute/universe python-bioframe 0.4.1-2 (dsc) [2253 B] 87s Get:2 http://ftpmaster.internal/ubuntu resolute/universe python-bioframe 0.4.1-2 (tar) [816 kB] 87s Get:3 http://ftpmaster.internal/ubuntu resolute/universe python-bioframe 0.4.1-2 (diff) [3576 B] 88s gpgv: Signature made Sat Feb 15 19:14:39 2025 UTC 88s gpgv: using RSA key 8F6DE104377F3B11E741748731F3144544A1741A 88s gpgv: issuer "tchet@debian.org" 88s gpgv: Can't check signature: No public key 88s dpkg-source: warning: cannot verify inline signature for ./python-bioframe_0.4.1-2.dsc: no acceptable signature found 88s autopkgtest [12:15:44]: testing package python-bioframe version 0.4.1-2 88s autopkgtest [12:15:44]: build not needed 97s autopkgtest [12:15:53]: test run-unit-test: preparing testbed 97s Reading package lists... 97s Building dependency tree... 97s Reading state information... 97s Solving dependencies... 98s The following NEW packages will be installed: 98s blt fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lyx libblas3 98s libdeflate0 libfontconfig1 libgfortran5 libgomp1 libgraphite2-3 98s libharfbuzz0b libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 liblapack3 98s liblcms2-2 liblerc4 libopenjp2-7 libpython3.14-minimal libpython3.14-stdlib 98s libqhull-r8.0 libraqm0 libsharpyuv0 libtcl8.6 libtiff6 libtk8.6 libwebp7 98s libwebpdemux2 libwebpmux3 libxft2 libxrender1 libxslt1.1 libxss1 libzopfli1 98s python-matplotlib-data python3-all python3-bioframe python3-brotli 98s python3-contourpy python3-cycler python3-decorator python3-fonttools 98s python3-fs python3-iniconfig python3-kiwisolver python3-lxml python3-lz4 98s python3-matplotlib python3-mpmath python3-numpy python3-numpy-dev 98s python3-pandas python3-pandas-lib python3-pil python3-pil.imagetk 98s python3-platformdirs python3-pluggy python3-pytest python3-pytz 98s python3-scipy python3-sympy python3-tk python3-ufolib2 python3-zopfli 98s python3.13-tk python3.14 python3.14-minimal python3.14-tk tk8.6-blt2.5 98s unicode-data x11-common 98s 0 upgraded, 73 newly installed, 0 to remove and 0 not upgraded. 98s Need to get 89.1 MB of archives. 98s After this operation, 416 MB of additional disk space will be used. 98s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-numpy-dev arm64 1:2.2.4+ds-1ubuntu1 [146 kB] 98s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 libblas3 arm64 3.12.1-7 [181 kB] 98s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 libgfortran5 arm64 15.2.0-7ubuntu1 [450 kB] 98s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 liblapack3 arm64 3.12.1-7 [2300 kB] 99s Get:5 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-numpy arm64 1:2.2.4+ds-1ubuntu1 [3986 kB] 99s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 libpython3.14-minimal arm64 3.14.0-4 [903 kB] 99s Get:7 http://ftpmaster.internal/ubuntu resolute/main arm64 python3.14-minimal arm64 3.14.0-4 [2543 kB] 100s Get:8 http://ftpmaster.internal/ubuntu resolute/main arm64 libtcl8.6 arm64 8.6.17+dfsg-1 [1024 kB] 100s Get:9 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 100s Get:10 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 100s Get:11 http://ftpmaster.internal/ubuntu resolute/main arm64 fontconfig-config arm64 2.15.0-2.3ubuntu1 [38.1 kB] 100s Get:12 http://ftpmaster.internal/ubuntu resolute/main arm64 libfontconfig1 arm64 2.15.0-2.3ubuntu1 [144 kB] 100s Get:13 http://ftpmaster.internal/ubuntu resolute/main arm64 libxrender1 arm64 1:0.9.12-1 [19.5 kB] 100s Get:14 http://ftpmaster.internal/ubuntu resolute/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB] 100s Get:15 http://ftpmaster.internal/ubuntu resolute/main arm64 x11-common all 1:7.7+24ubuntu1 [22.4 kB] 100s Get:16 http://ftpmaster.internal/ubuntu resolute/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B] 100s Get:17 http://ftpmaster.internal/ubuntu resolute/main arm64 libtk8.6 arm64 8.6.17-1 [811 kB] 100s Get:18 http://ftpmaster.internal/ubuntu resolute/main arm64 tk8.6-blt2.5 arm64 2.5.3+dfsg-8 [624 kB] 100s Get:19 http://ftpmaster.internal/ubuntu resolute/main arm64 blt arm64 2.5.3+dfsg-8 [4824 B] 100s Get:20 http://ftpmaster.internal/ubuntu resolute/universe arm64 fonts-lyx all 2.4.4-2 [171 kB] 100s Get:21 http://ftpmaster.internal/ubuntu resolute/main arm64 libdeflate0 arm64 1.23-2 [46.4 kB] 100s Get:22 http://ftpmaster.internal/ubuntu resolute/main arm64 libgomp1 arm64 15.2.0-7ubuntu1 [147 kB] 100s Get:23 http://ftpmaster.internal/ubuntu resolute/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB] 100s Get:24 http://ftpmaster.internal/ubuntu resolute/main arm64 libharfbuzz0b arm64 12.1.0-1 [523 kB] 100s Get:25 http://ftpmaster.internal/ubuntu resolute/main arm64 libimagequant0 arm64 2.18.0-1build1 [37.1 kB] 100s Get:26 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg-turbo8 arm64 2.1.5-4ubuntu2 [165 kB] 100s Get:27 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 100s Get:28 http://ftpmaster.internal/ubuntu resolute/main arm64 liblcms2-2 arm64 2.17-1 [170 kB] 100s Get:29 http://ftpmaster.internal/ubuntu resolute/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB] 100s Get:30 http://ftpmaster.internal/ubuntu resolute/main arm64 libpython3.14-stdlib arm64 3.14.0-4 [2349 kB] 100s Get:31 http://ftpmaster.internal/ubuntu resolute/universe arm64 libqhull-r8.0 arm64 2020.2-7 [190 kB] 100s Get:32 http://ftpmaster.internal/ubuntu resolute/main arm64 libraqm0 arm64 0.10.3-1 [15.0 kB] 100s Get:33 http://ftpmaster.internal/ubuntu resolute/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB] 100s Get:34 http://ftpmaster.internal/ubuntu resolute/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB] 100s Get:35 http://ftpmaster.internal/ubuntu resolute/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB] 100s Get:36 http://ftpmaster.internal/ubuntu resolute/main arm64 libtiff6 arm64 4.7.0-3ubuntu3 [196 kB] 100s Get:37 http://ftpmaster.internal/ubuntu resolute/main arm64 libwebpdemux2 arm64 1.5.0-0.1 [12.5 kB] 100s Get:38 http://ftpmaster.internal/ubuntu resolute/main arm64 libwebpmux3 arm64 1.5.0-0.1 [25.4 kB] 100s Get:39 http://ftpmaster.internal/ubuntu resolute/main arm64 libxslt1.1 arm64 1.1.43-0.3 [172 kB] 100s Get:40 http://ftpmaster.internal/ubuntu resolute/universe arm64 libzopfli1 arm64 1.0.3-3 [108 kB] 100s Get:41 http://ftpmaster.internal/ubuntu resolute/universe arm64 python-matplotlib-data all 3.10.7+dfsg1-1 [2930 kB] 100s Get:42 http://ftpmaster.internal/ubuntu resolute/main arm64 python3.14 arm64 3.14.0-4 [805 kB] 100s Get:43 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 python3-all arm64 3.13.7-2 [890 B] 100s Get:44 http://ftpmaster.internal/ubuntu resolute/main arm64 libopenjp2-7 arm64 2.5.3-2.1 [179 kB] 100s Get:45 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-pil arm64 11.3.0-1ubuntu2 [492 kB] 101s Get:46 http://ftpmaster.internal/ubuntu resolute/main arm64 python3.14-tk arm64 3.14.0-4 [107 kB] 101s Get:47 http://ftpmaster.internal/ubuntu resolute/main arm64 python3.13-tk arm64 3.13.9-1 [106 kB] 101s Get:48 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-tk arm64 3.13.9-1 [8946 B] 101s Get:49 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pil.imagetk arm64 11.3.0-1ubuntu2 [9582 B] 101s Get:50 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-contourpy arm64 1.3.1-2 [240 kB] 101s Get:51 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-cycler all 0.12.1-2 [9850 B] 101s Get:52 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-brotli arm64 1.1.0-2build6 [343 kB] 101s Get:53 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-platformdirs all 4.3.7-1 [16.9 kB] 101s Get:54 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-fs all 2.4.16-9ubuntu1 [91.5 kB] 101s Get:55 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-lxml arm64 6.0.2-1 [2155 kB] 101s Get:56 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-lz4 arm64 4.4.4+dfsg-3 [27.6 kB] 101s Get:57 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-decorator all 5.2.1-2 [28.1 kB] 101s Get:58 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-scipy arm64 1.15.3-1ubuntu1 [18.7 MB] 101s Get:59 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-mpmath all 1.3.0-2 [423 kB] 101s Get:60 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-sympy all 1.14.0-2 [4306 kB] 102s Get:61 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-ufolib2 all 0.17.1+dfsg1-1 [33.5 kB] 102s Get:62 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-zopfli arm64 0.4.0-1 [10.8 kB] 102s Get:63 http://ftpmaster.internal/ubuntu resolute/universe arm64 unicode-data all 16.0.0-1 [9513 kB] 102s Get:64 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-fonttools arm64 4.57.0-2build1 [1648 kB] 102s Get:65 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-kiwisolver arm64 1.4.10~rc0-1 [60.1 kB] 102s Get:66 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-matplotlib arm64 3.10.7+dfsg1-1 [17.1 MB] 102s Get:67 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-pytz all 2025.2-4 [32.3 kB] 102s Get:68 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pandas-lib arm64 2.3.3+dfsg-1ubuntu1 [6979 kB] 102s Get:69 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pandas all 2.3.3+dfsg-1ubuntu1 [2948 kB] 102s Get:70 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-bioframe all 0.4.1-2 [76.3 kB] 102s Get:71 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-iniconfig all 2.1.0-1 [6840 B] 102s Get:72 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pluggy all 1.6.0-1 [21.0 kB] 102s Get:73 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pytest all 8.3.5-2 [252 kB] 103s Fetched 89.1 MB in 5s (18.4 MB/s) 103s Selecting previously unselected package python3-numpy-dev:arm64. 103s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 88137 files and directories currently installed.) 103s Preparing to unpack .../00-python3-numpy-dev_1%3a2.2.4+ds-1ubuntu1_arm64.deb ... 103s Unpacking python3-numpy-dev:arm64 (1:2.2.4+ds-1ubuntu1) ... 103s Selecting previously unselected package libblas3:arm64. 103s Preparing to unpack .../01-libblas3_3.12.1-7_arm64.deb ... 103s Unpacking libblas3:arm64 (3.12.1-7) ... 103s Selecting previously unselected package libgfortran5:arm64. 103s Preparing to unpack .../02-libgfortran5_15.2.0-7ubuntu1_arm64.deb ... 103s Unpacking libgfortran5:arm64 (15.2.0-7ubuntu1) ... 103s Selecting previously unselected package liblapack3:arm64. 103s Preparing to unpack .../03-liblapack3_3.12.1-7_arm64.deb ... 103s Unpacking liblapack3:arm64 (3.12.1-7) ... 103s Selecting previously unselected package python3-numpy. 103s Preparing to unpack .../04-python3-numpy_1%3a2.2.4+ds-1ubuntu1_arm64.deb ... 103s Unpacking python3-numpy (1:2.2.4+ds-1ubuntu1) ... 103s Selecting previously unselected package libpython3.14-minimal:arm64. 103s Preparing to unpack .../05-libpython3.14-minimal_3.14.0-4_arm64.deb ... 103s Unpacking libpython3.14-minimal:arm64 (3.14.0-4) ... 103s Selecting previously unselected package python3.14-minimal. 103s Preparing to unpack .../06-python3.14-minimal_3.14.0-4_arm64.deb ... 103s Unpacking python3.14-minimal (3.14.0-4) ... 104s Selecting previously unselected package libtcl8.6:arm64. 104s Preparing to unpack .../07-libtcl8.6_8.6.17+dfsg-1_arm64.deb ... 104s Unpacking libtcl8.6:arm64 (8.6.17+dfsg-1) ... 104s Selecting previously unselected package fonts-dejavu-mono. 104s Preparing to unpack .../08-fonts-dejavu-mono_2.37-8_all.deb ... 104s Unpacking fonts-dejavu-mono (2.37-8) ... 104s Selecting previously unselected package fonts-dejavu-core. 104s Preparing to unpack .../09-fonts-dejavu-core_2.37-8_all.deb ... 104s Unpacking fonts-dejavu-core (2.37-8) ... 104s Selecting previously unselected package fontconfig-config. 104s Preparing to unpack .../10-fontconfig-config_2.15.0-2.3ubuntu1_arm64.deb ... 104s Unpacking fontconfig-config (2.15.0-2.3ubuntu1) ... 104s Selecting previously unselected package libfontconfig1:arm64. 104s Preparing to unpack .../11-libfontconfig1_2.15.0-2.3ubuntu1_arm64.deb ... 104s Unpacking libfontconfig1:arm64 (2.15.0-2.3ubuntu1) ... 104s Selecting previously unselected package libxrender1:arm64. 104s Preparing to unpack .../12-libxrender1_1%3a0.9.12-1_arm64.deb ... 104s Unpacking libxrender1:arm64 (1:0.9.12-1) ... 104s Selecting previously unselected package libxft2:arm64. 104s Preparing to unpack .../13-libxft2_2.3.6-1build1_arm64.deb ... 104s Unpacking libxft2:arm64 (2.3.6-1build1) ... 104s Selecting previously unselected package x11-common. 104s Preparing to unpack .../14-x11-common_1%3a7.7+24ubuntu1_all.deb ... 104s Unpacking x11-common (1:7.7+24ubuntu1) ... 104s Selecting previously unselected package libxss1:arm64. 104s Preparing to unpack .../15-libxss1_1%3a1.2.3-1build3_arm64.deb ... 104s Unpacking libxss1:arm64 (1:1.2.3-1build3) ... 104s Selecting previously unselected package libtk8.6:arm64. 104s Preparing to unpack .../16-libtk8.6_8.6.17-1_arm64.deb ... 104s Unpacking libtk8.6:arm64 (8.6.17-1) ... 104s Selecting previously unselected package tk8.6-blt2.5. 104s Preparing to unpack .../17-tk8.6-blt2.5_2.5.3+dfsg-8_arm64.deb ... 104s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-8) ... 104s Selecting previously unselected package blt. 104s Preparing to unpack .../18-blt_2.5.3+dfsg-8_arm64.deb ... 104s Unpacking blt (2.5.3+dfsg-8) ... 104s Selecting previously unselected package fonts-lyx. 104s Preparing to unpack .../19-fonts-lyx_2.4.4-2_all.deb ... 104s Unpacking fonts-lyx (2.4.4-2) ... 104s Selecting previously unselected package libdeflate0:arm64. 104s Preparing to unpack .../20-libdeflate0_1.23-2_arm64.deb ... 104s Unpacking libdeflate0:arm64 (1.23-2) ... 104s Selecting previously unselected package libgomp1:arm64. 104s Preparing to unpack .../21-libgomp1_15.2.0-7ubuntu1_arm64.deb ... 104s Unpacking libgomp1:arm64 (15.2.0-7ubuntu1) ... 104s Selecting previously unselected package libgraphite2-3:arm64. 104s Preparing to unpack .../22-libgraphite2-3_1.3.14-2ubuntu1_arm64.deb ... 104s Unpacking libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 104s Selecting previously unselected package libharfbuzz0b:arm64. 105s Preparing to unpack .../23-libharfbuzz0b_12.1.0-1_arm64.deb ... 105s Unpacking libharfbuzz0b:arm64 (12.1.0-1) ... 105s Selecting previously unselected package libimagequant0:arm64. 105s Preparing to unpack .../24-libimagequant0_2.18.0-1build1_arm64.deb ... 105s Unpacking libimagequant0:arm64 (2.18.0-1build1) ... 105s Selecting previously unselected package libjpeg-turbo8:arm64. 105s Preparing to unpack .../25-libjpeg-turbo8_2.1.5-4ubuntu2_arm64.deb ... 105s Unpacking libjpeg-turbo8:arm64 (2.1.5-4ubuntu2) ... 105s Selecting previously unselected package libjpeg8:arm64. 105s Preparing to unpack .../26-libjpeg8_8c-2ubuntu11_arm64.deb ... 105s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 105s Selecting previously unselected package liblcms2-2:arm64. 105s Preparing to unpack .../27-liblcms2-2_2.17-1_arm64.deb ... 105s Unpacking liblcms2-2:arm64 (2.17-1) ... 105s Selecting previously unselected package liblerc4:arm64. 105s Preparing to unpack .../28-liblerc4_4.0.0+ds-5ubuntu1_arm64.deb ... 105s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 105s Selecting previously unselected package libpython3.14-stdlib:arm64. 105s Preparing to unpack .../29-libpython3.14-stdlib_3.14.0-4_arm64.deb ... 105s Unpacking libpython3.14-stdlib:arm64 (3.14.0-4) ... 105s Selecting previously unselected package libqhull-r8.0:arm64. 105s Preparing to unpack .../30-libqhull-r8.0_2020.2-7_arm64.deb ... 105s Unpacking libqhull-r8.0:arm64 (2020.2-7) ... 105s Selecting previously unselected package libraqm0:arm64. 105s Preparing to unpack .../31-libraqm0_0.10.3-1_arm64.deb ... 105s Unpacking libraqm0:arm64 (0.10.3-1) ... 105s Selecting previously unselected package libsharpyuv0:arm64. 105s Preparing to unpack .../32-libsharpyuv0_1.5.0-0.1_arm64.deb ... 105s Unpacking libsharpyuv0:arm64 (1.5.0-0.1) ... 105s Selecting previously unselected package libjbig0:arm64. 105s Preparing to unpack .../33-libjbig0_2.1-6.1ubuntu2_arm64.deb ... 105s Unpacking libjbig0:arm64 (2.1-6.1ubuntu2) ... 105s Selecting previously unselected package libwebp7:arm64. 105s Preparing to unpack .../34-libwebp7_1.5.0-0.1_arm64.deb ... 105s Unpacking libwebp7:arm64 (1.5.0-0.1) ... 105s Selecting previously unselected package libtiff6:arm64. 105s Preparing to unpack .../35-libtiff6_4.7.0-3ubuntu3_arm64.deb ... 105s Unpacking libtiff6:arm64 (4.7.0-3ubuntu3) ... 105s Selecting previously unselected package libwebpdemux2:arm64. 105s Preparing to unpack .../36-libwebpdemux2_1.5.0-0.1_arm64.deb ... 105s Unpacking libwebpdemux2:arm64 (1.5.0-0.1) ... 105s Selecting previously unselected package libwebpmux3:arm64. 105s Preparing to unpack .../37-libwebpmux3_1.5.0-0.1_arm64.deb ... 105s Unpacking libwebpmux3:arm64 (1.5.0-0.1) ... 105s Selecting previously unselected package libxslt1.1:arm64. 105s Preparing to unpack .../38-libxslt1.1_1.1.43-0.3_arm64.deb ... 105s Unpacking libxslt1.1:arm64 (1.1.43-0.3) ... 105s Selecting previously unselected package libzopfli1. 105s Preparing to unpack .../39-libzopfli1_1.0.3-3_arm64.deb ... 105s Unpacking libzopfli1 (1.0.3-3) ... 105s Selecting previously unselected package python-matplotlib-data. 105s Preparing to unpack .../40-python-matplotlib-data_3.10.7+dfsg1-1_all.deb ... 105s Unpacking python-matplotlib-data (3.10.7+dfsg1-1) ... 105s Selecting previously unselected package python3.14. 105s Preparing to unpack .../41-python3.14_3.14.0-4_arm64.deb ... 105s Unpacking python3.14 (3.14.0-4) ... 105s Selecting previously unselected package python3-all. 105s Preparing to unpack .../42-python3-all_3.13.7-2_arm64.deb ... 105s Unpacking python3-all (3.13.7-2) ... 105s Selecting previously unselected package libopenjp2-7:arm64. 105s Preparing to unpack .../43-libopenjp2-7_2.5.3-2.1_arm64.deb ... 105s Unpacking libopenjp2-7:arm64 (2.5.3-2.1) ... 105s Selecting previously unselected package python3-pil:arm64. 105s Preparing to unpack .../44-python3-pil_11.3.0-1ubuntu2_arm64.deb ... 105s Unpacking python3-pil:arm64 (11.3.0-1ubuntu2) ... 105s Selecting previously unselected package python3.14-tk. 105s Preparing to unpack .../45-python3.14-tk_3.14.0-4_arm64.deb ... 105s Unpacking python3.14-tk (3.14.0-4) ... 105s Selecting previously unselected package python3.13-tk. 105s Preparing to unpack .../46-python3.13-tk_3.13.9-1_arm64.deb ... 105s Unpacking python3.13-tk (3.13.9-1) ... 106s Selecting previously unselected package python3-tk:arm64. 106s Preparing to unpack .../47-python3-tk_3.13.9-1_arm64.deb ... 106s Unpacking python3-tk:arm64 (3.13.9-1) ... 106s Selecting previously unselected package python3-pil.imagetk:arm64. 106s Preparing to unpack .../48-python3-pil.imagetk_11.3.0-1ubuntu2_arm64.deb ... 106s Unpacking python3-pil.imagetk:arm64 (11.3.0-1ubuntu2) ... 106s Selecting previously unselected package python3-contourpy. 106s Preparing to unpack .../49-python3-contourpy_1.3.1-2_arm64.deb ... 106s Unpacking python3-contourpy (1.3.1-2) ... 106s Selecting previously unselected package python3-cycler. 106s Preparing to unpack .../50-python3-cycler_0.12.1-2_all.deb ... 106s Unpacking python3-cycler (0.12.1-2) ... 106s Selecting previously unselected package python3-brotli. 106s Preparing to unpack .../51-python3-brotli_1.1.0-2build6_arm64.deb ... 106s Unpacking python3-brotli (1.1.0-2build6) ... 106s Selecting previously unselected package python3-platformdirs. 106s Preparing to unpack .../52-python3-platformdirs_4.3.7-1_all.deb ... 106s Unpacking python3-platformdirs (4.3.7-1) ... 106s Selecting previously unselected package python3-fs. 106s Preparing to unpack .../53-python3-fs_2.4.16-9ubuntu1_all.deb ... 106s Unpacking python3-fs (2.4.16-9ubuntu1) ... 106s Selecting previously unselected package python3-lxml:arm64. 106s Preparing to unpack .../54-python3-lxml_6.0.2-1_arm64.deb ... 106s Unpacking python3-lxml:arm64 (6.0.2-1) ... 106s Selecting previously unselected package python3-lz4. 106s Preparing to unpack .../55-python3-lz4_4.4.4+dfsg-3_arm64.deb ... 106s Unpacking python3-lz4 (4.4.4+dfsg-3) ... 106s Selecting previously unselected package python3-decorator. 106s Preparing to unpack .../56-python3-decorator_5.2.1-2_all.deb ... 106s Unpacking python3-decorator (5.2.1-2) ... 106s Selecting previously unselected package python3-scipy. 106s Preparing to unpack .../57-python3-scipy_1.15.3-1ubuntu1_arm64.deb ... 106s Unpacking python3-scipy (1.15.3-1ubuntu1) ... 107s Selecting previously unselected package python3-mpmath. 107s Preparing to unpack .../58-python3-mpmath_1.3.0-2_all.deb ... 107s Unpacking python3-mpmath (1.3.0-2) ... 107s Selecting previously unselected package python3-sympy. 107s Preparing to unpack .../59-python3-sympy_1.14.0-2_all.deb ... 107s Unpacking python3-sympy (1.14.0-2) ... 107s Selecting previously unselected package python3-ufolib2. 107s Preparing to unpack .../60-python3-ufolib2_0.17.1+dfsg1-1_all.deb ... 107s Unpacking python3-ufolib2 (0.17.1+dfsg1-1) ... 107s Selecting previously unselected package python3-zopfli. 107s Preparing to unpack .../61-python3-zopfli_0.4.0-1_arm64.deb ... 107s Unpacking python3-zopfli (0.4.0-1) ... 107s Selecting previously unselected package unicode-data. 107s Preparing to unpack .../62-unicode-data_16.0.0-1_all.deb ... 107s Unpacking unicode-data (16.0.0-1) ... 107s Selecting previously unselected package python3-fonttools. 107s Preparing to unpack .../63-python3-fonttools_4.57.0-2build1_arm64.deb ... 107s Unpacking python3-fonttools (4.57.0-2build1) ... 107s Selecting previously unselected package python3-kiwisolver. 107s Preparing to unpack .../64-python3-kiwisolver_1.4.10~rc0-1_arm64.deb ... 107s Unpacking python3-kiwisolver (1.4.10~rc0-1) ... 107s Selecting previously unselected package python3-matplotlib. 107s Preparing to unpack .../65-python3-matplotlib_3.10.7+dfsg1-1_arm64.deb ... 107s Unpacking python3-matplotlib (3.10.7+dfsg1-1) ... 108s Selecting previously unselected package python3-pytz. 108s Preparing to unpack .../66-python3-pytz_2025.2-4_all.deb ... 108s Unpacking python3-pytz (2025.2-4) ... 108s Selecting previously unselected package python3-pandas-lib:arm64. 108s Preparing to unpack .../67-python3-pandas-lib_2.3.3+dfsg-1ubuntu1_arm64.deb ... 108s Unpacking python3-pandas-lib:arm64 (2.3.3+dfsg-1ubuntu1) ... 108s Selecting previously unselected package python3-pandas. 108s Preparing to unpack .../68-python3-pandas_2.3.3+dfsg-1ubuntu1_all.deb ... 108s Unpacking python3-pandas (2.3.3+dfsg-1ubuntu1) ... 108s Selecting previously unselected package python3-bioframe. 108s Preparing to unpack .../69-python3-bioframe_0.4.1-2_all.deb ... 108s Unpacking python3-bioframe (0.4.1-2) ... 108s Selecting previously unselected package python3-iniconfig. 108s Preparing to unpack .../70-python3-iniconfig_2.1.0-1_all.deb ... 108s Unpacking python3-iniconfig (2.1.0-1) ... 108s Selecting previously unselected package python3-pluggy. 108s Preparing to unpack .../71-python3-pluggy_1.6.0-1_all.deb ... 108s Unpacking python3-pluggy (1.6.0-1) ... 108s Selecting previously unselected package python3-pytest. 108s Preparing to unpack .../72-python3-pytest_8.3.5-2_all.deb ... 108s Unpacking python3-pytest (8.3.5-2) ... 108s Setting up libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 108s Setting up liblcms2-2:arm64 (2.17-1) ... 108s Setting up python3-iniconfig (2.1.0-1) ... 109s Setting up libsharpyuv0:arm64 (1.5.0-0.1) ... 109s Setting up liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 109s Setting up libxrender1:arm64 (1:0.9.12-1) ... 109s Setting up python3-lz4 (4.4.4+dfsg-3) ... 109s Setting up fonts-lyx (2.4.4-2) ... 109s Setting up libpython3.14-minimal:arm64 (3.14.0-4) ... 109s Setting up x11-common (1:7.7+24ubuntu1) ... 109s Setting up libdeflate0:arm64 (1.23-2) ... 109s Setting up libqhull-r8.0:arm64 (2020.2-7) ... 109s Setting up python3-pytz (2025.2-4) ... 109s Setting up libgomp1:arm64 (15.2.0-7ubuntu1) ... 109s Setting up libjbig0:arm64 (2.1-6.1ubuntu2) ... 109s Setting up python3-platformdirs (4.3.7-1) ... 110s Setting up python3-fs (2.4.16-9ubuntu1) ... 110s Setting up unicode-data (16.0.0-1) ... 110s Setting up python3-decorator (5.2.1-2) ... 110s Setting up libblas3:arm64 (3.12.1-7) ... 110s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 110s Setting up libzopfli1 (1.0.3-3) ... 110s Setting up python3-brotli (1.1.0-2build6) ... 110s Setting up python3-cycler (0.12.1-2) ... 110s Setting up libimagequant0:arm64 (2.18.0-1build1) ... 110s Setting up fonts-dejavu-mono (2.37-8) ... 110s Setting up python3-kiwisolver (1.4.10~rc0-1) ... 111s Setting up python3-numpy-dev:arm64 (1:2.2.4+ds-1ubuntu1) ... 111s Setting up libtcl8.6:arm64 (8.6.17+dfsg-1) ... 111s Setting up fonts-dejavu-core (2.37-8) ... 111s Setting up libjpeg-turbo8:arm64 (2.1.5-4ubuntu2) ... 111s Setting up libgfortran5:arm64 (15.2.0-7ubuntu1) ... 111s Setting up python3-pluggy (1.6.0-1) ... 111s Setting up libwebp7:arm64 (1.5.0-0.1) ... 111s Setting up libxslt1.1:arm64 (1.1.43-0.3) ... 111s Setting up libopenjp2-7:arm64 (2.5.3-2.1) ... 111s Setting up libharfbuzz0b:arm64 (12.1.0-1) ... 111s Setting up libxss1:arm64 (1:1.2.3-1build3) ... 111s Setting up python3-mpmath (1.3.0-2) ... 112s Setting up python-matplotlib-data (3.10.7+dfsg1-1) ... 112s Setting up libwebpmux3:arm64 (1.5.0-0.1) ... 112s Setting up python3.14-minimal (3.14.0-4) ... 113s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 113s Setting up python3-sympy (1.14.0-2) ... 124s /usr/lib/python3/dist-packages/sympy/testing/runtests.py:283: SyntaxWarning: 'return' in a 'finally' block 124s return p.returncode 125s Setting up liblapack3:arm64 (3.12.1-7) ... 125s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 125s Setting up libpython3.14-stdlib:arm64 (3.14.0-4) ... 125s Setting up fontconfig-config (2.15.0-2.3ubuntu1) ... 125s Setting up python3-pytest (8.3.5-2) ... 126s Setting up libwebpdemux2:arm64 (1.5.0-0.1) ... 126s Setting up python3-zopfli (0.4.0-1) ... 126s Setting up libraqm0:arm64 (0.10.3-1) ... 126s Setting up python3-numpy (1:2.2.4+ds-1ubuntu1) ... 129s Setting up python3-lxml:arm64 (6.0.2-1) ... 130s Setting up libtiff6:arm64 (4.7.0-3ubuntu3) ... 130s Setting up python3-contourpy (1.3.1-2) ... 130s Setting up libfontconfig1:arm64 (2.15.0-2.3ubuntu1) ... 130s Setting up python3.14 (3.14.0-4) ... 131s Setting up libxft2:arm64 (2.3.6-1build1) ... 131s Setting up python3-scipy (1.15.3-1ubuntu1) ... 135s /usr/lib/python3/dist-packages/scipy/optimize/_optimize.py:921: SyntaxWarning: 'break' in a 'finally' block 135s break 138s Setting up libtk8.6:arm64 (8.6.17-1) ... 138s Setting up python3-pandas-lib:arm64 (2.3.3+dfsg-1ubuntu1) ... 138s Setting up python3-all (3.13.7-2) ... 138s Setting up python3.13-tk (3.13.9-1) ... 138s Setting up python3-pil:arm64 (11.3.0-1ubuntu2) ... 138s Setting up python3-pandas (2.3.3+dfsg-1ubuntu1) ... 148s Setting up tk8.6-blt2.5 (2.5.3+dfsg-8) ... 148s Setting up python3.14-tk (3.14.0-4) ... 148s Setting up blt (2.5.3+dfsg-8) ... 148s Setting up python3-tk:arm64 (3.13.9-1) ... 148s Setting up python3-pil.imagetk:arm64 (11.3.0-1ubuntu2) ... 148s Setting up python3-fonttools (4.57.0-2build1) ... 150s Setting up python3-ufolib2 (0.17.1+dfsg1-1) ... 150s Setting up python3-matplotlib (3.10.7+dfsg1-1) ... 153s Setting up python3-bioframe (0.4.1-2) ... 153s Processing triggers for libc-bin (2.42-2ubuntu2) ... 153s Processing triggers for systemd (257.9-0ubuntu2) ... 153s Processing triggers for man-db (2.13.1-1) ... 155s autopkgtest [12:16:51]: test run-unit-test: [----------------------- 155s ============================= test session starts ============================== 155s platform linux -- Python 3.14.0, pytest-8.3.5, pluggy-1.6.0 -- /usr/bin/python3.14 155s cachedir: .pytest_cache 155s rootdir: /tmp/autopkgtest.nOtM32/autopkgtest_tmp 155s plugins: typeguard-4.4.2 156s collecting ... collected 0 items / 8 errors 156s 156s ==================================== ERRORS ==================================== 156s __________________ ERROR collecting tests/test_core_checks.py __________________ 156s ImportError while importing test module '/tmp/autopkgtest.nOtM32/autopkgtest_tmp/tests/test_core_checks.py'. 156s Hint: make sure your test modules/packages have valid Python names. 156s Traceback: 156s /usr/lib/python3.14/importlib/__init__.py:88: in import_module 156s return _bootstrap._gcd_import(name[level:], package, level) 156s tests/test_core_checks.py:3: in 156s import pandas as pd 156s /usr/lib/python3/dist-packages/pandas/__init__.py:19: in 156s raise ImportError( 156s E ImportError: Unable to import required dependencies: 156s E numpy: Error importing numpy: you should not try to import numpy from 156s E its source directory; please exit the numpy source tree, and relaunch 156s E your python interpreter from there. 156s _______________ ERROR collecting tests/test_core_construction.py _______________ 156s ImportError while importing test module '/tmp/autopkgtest.nOtM32/autopkgtest_tmp/tests/test_core_construction.py'. 156s Hint: make sure your test modules/packages have valid Python names. 156s Traceback: 156s /usr/lib/python3.14/importlib/__init__.py:88: in import_module 156s return _bootstrap._gcd_import(name[level:], package, level) 156s tests/test_core_construction.py:3: in 156s import pandas as pd 156s /usr/lib/python3/dist-packages/pandas/__init__.py:19: in 156s raise ImportError( 156s E ImportError: Unable to import required dependencies: 156s E numpy: Error importing numpy: you should not try to import numpy from 156s E its source directory; please exit the numpy source tree, and relaunch 156s E your python interpreter from there. 156s __________________ ERROR collecting tests/test_core_specs.py ___________________ 156s ImportError while importing test module '/tmp/autopkgtest.nOtM32/autopkgtest_tmp/tests/test_core_specs.py'. 156s Hint: make sure your test modules/packages have valid Python names. 156s Traceback: 156s /usr/lib/python3.14/importlib/__init__.py:88: in import_module 156s return _bootstrap._gcd_import(name[level:], package, level) 156s tests/test_core_specs.py:3: in 156s import pandas as pd 156s /usr/lib/python3/dist-packages/pandas/__init__.py:19: in 156s raise ImportError( 156s E ImportError: Unable to import required dependencies: 156s E numpy: Error importing numpy: you should not try to import numpy from 156s E its source directory; please exit the numpy source tree, and relaunch 156s E your python interpreter from there. 156s ________________ ERROR collecting tests/test_core_stringops.py _________________ 156s ImportError while importing test module '/tmp/autopkgtest.nOtM32/autopkgtest_tmp/tests/test_core_stringops.py'. 156s Hint: make sure your test modules/packages have valid Python names. 156s Traceback: 156s /usr/lib/python3.14/importlib/__init__.py:88: in import_module 156s return _bootstrap._gcd_import(name[level:], package, level) 156s tests/test_core_stringops.py:1: in 156s import pandas as pd 156s /usr/lib/python3/dist-packages/pandas/__init__.py:19: in 156s raise ImportError( 156s E ImportError: Unable to import required dependencies: 156s E numpy: Error importing numpy: you should not try to import numpy from 156s E its source directory; please exit the numpy source tree, and relaunch 156s E your python interpreter from there. 156s ____________________ ERROR collecting tests/test_extras.py _____________________ 156s ImportError while importing test module '/tmp/autopkgtest.nOtM32/autopkgtest_tmp/tests/test_extras.py'. 156s Hint: make sure your test modules/packages have valid Python names. 156s Traceback: 156s /usr/lib/python3.14/importlib/__init__.py:88: in import_module 156s return _bootstrap._gcd_import(name[level:], package, level) 156s tests/test_extras.py:4: in 156s import pandas as pd 156s /usr/lib/python3/dist-packages/pandas/__init__.py:19: in 156s raise ImportError( 156s E ImportError: Unable to import required dependencies: 156s E numpy: Error importing numpy: you should not try to import numpy from 156s E its source directory; please exit the numpy source tree, and relaunch 156s E your python interpreter from there. 156s ______________________ ERROR collecting tests/test_io.py _______________________ 156s ImportError while importing test module '/tmp/autopkgtest.nOtM32/autopkgtest_tmp/tests/test_io.py'. 156s Hint: make sure your test modules/packages have valid Python names. 156s Traceback: 156s /usr/lib/python3.14/importlib/__init__.py:88: in import_module 156s return _bootstrap._gcd_import(name[level:], package, level) 156s tests/test_io.py:3: in 156s import pandas as pd 156s /usr/lib/python3/dist-packages/pandas/__init__.py:19: in 156s raise ImportError( 156s E ImportError: Unable to import required dependencies: 156s E numpy: Error importing numpy: you should not try to import numpy from 156s E its source directory; please exit the numpy source tree, and relaunch 156s E your python interpreter from there. 156s ______________________ ERROR collecting tests/test_ops.py ______________________ 156s ImportError while importing test module '/tmp/autopkgtest.nOtM32/autopkgtest_tmp/tests/test_ops.py'. 156s Hint: make sure your test modules/packages have valid Python names. 156s Traceback: 156s /usr/lib/python3.14/importlib/__init__.py:88: in import_module 156s return _bootstrap._gcd_import(name[level:], package, level) 156s tests/test_ops.py:3: in 156s import pandas as pd 156s /usr/lib/python3/dist-packages/pandas/__init__.py:19: in 156s raise ImportError( 156s E ImportError: Unable to import required dependencies: 156s E numpy: Error importing numpy: you should not try to import numpy from 156s E its source directory; please exit the numpy source tree, and relaunch 156s E your python interpreter from there. 156s __________________ ERROR collecting tests/test_ops_select.py ___________________ 156s ImportError while importing test module '/tmp/autopkgtest.nOtM32/autopkgtest_tmp/tests/test_ops_select.py'. 156s Hint: make sure your test modules/packages have valid Python names. 156s Traceback: 156s /usr/lib/python3.14/importlib/__init__.py:88: in import_module 156s return _bootstrap._gcd_import(name[level:], package, level) 156s tests/test_ops_select.py:1: in 156s import pandas as pd 156s /usr/lib/python3/dist-packages/pandas/__init__.py:19: in 156s raise ImportError( 156s E ImportError: Unable to import required dependencies: 156s E numpy: Error importing numpy: you should not try to import numpy from 156s E its source directory; please exit the numpy source tree, and relaunch 156s E your python interpreter from there. 156s =============================== warnings summary =============================== 156s tests/test_io.py:23 156s /tmp/autopkgtest.nOtM32/autopkgtest_tmp/tests/test_io.py:23: SyntaxWarning: "\s" is an invalid escape sequence. Such sequences will not work in the future. Did you mean "\\s"? A raw string is also an option. 156s assert bioframe.read_table(StringIO(d), schema="bed3", sep="\s+").shape == (3, 3) 156s 156s tests/test_io.py:24 156s /tmp/autopkgtest.nOtM32/autopkgtest_tmp/tests/test_io.py:24: SyntaxWarning: "\s" is an invalid escape sequence. Such sequences will not work in the future. Did you mean "\\s"? A raw string is also an option. 156s assert bioframe.read_table(StringIO(d), schema="bed6", sep="\s+").shape == (3, 6) 156s 156s tests/test_io.py:25 156s /tmp/autopkgtest.nOtM32/autopkgtest_tmp/tests/test_io.py:25: SyntaxWarning: "\s" is an invalid escape sequence. Such sequences will not work in the future. Did you mean "\\s"? A raw string is also an option. 156s assert bioframe.read_table(StringIO(d), schema="bed12", sep="\s+").shape == (3, 12) 156s 156s tests/test_io.py:33 156s /tmp/autopkgtest.nOtM32/autopkgtest_tmp/tests/test_io.py:33: SyntaxWarning: "\s" is an invalid escape sequence. Such sequences will not work in the future. Did you mean "\\s"? A raw string is also an option. 156s StringIO(d), schema="bedpe", sep="\s+", schema_is_strict=True 156s 156s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 156s =========================== short test summary info ============================ 156s ERROR tests/test_core_checks.py 156s ERROR tests/test_core_construction.py 156s ERROR tests/test_core_specs.py 156s ERROR tests/test_core_stringops.py 156s ERROR tests/test_extras.py 156s ERROR tests/test_io.py 156s ERROR tests/test_ops.py 156s ERROR tests/test_ops_select.py 156s !!!!!!!!!!!!!!!!!!! Interrupted: 8 errors during collection !!!!!!!!!!!!!!!!!!!! 156s ======================== 4 warnings, 8 errors in 0.52s ========================= 156s autopkgtest [12:16:52]: test run-unit-test: -----------------------] 157s run-unit-test FAIL non-zero exit status 2 157s autopkgtest [12:16:53]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 157s autopkgtest [12:16:53]: @@@@@@@@@@@@@@@@@@@@ summary 157s run-unit-test FAIL non-zero exit status 2