0s autopkgtest [12:22:25]: starting date and time: 2025-11-01 12:22:25+0000 0s autopkgtest [12:22:25]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [12:22:25]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.4o0b2fi1/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:scipy --apt-upgrade python-ase --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=scipy/1.16.3-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-arm64-17.secgroup --name adt-resolute-arm64-python-ase-20251101-122225-juju-7f2275-prod-proposed-migration-environment-15-9674ae58-8b15-428b-a17f-e1bede353792 --image adt/ubuntu-resolute-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 3s Creating nova instance adt-resolute-arm64-python-ase-20251101-122225-juju-7f2275-prod-proposed-migration-environment-15-9674ae58-8b15-428b-a17f-e1bede353792 from image adt/ubuntu-resolute-arm64-server-20251101.img (UUID 895f8d05-65a0-4cf8-81a2-1a04d79b538c)... 63s autopkgtest [12:23:28]: testbed dpkg architecture: arm64 63s autopkgtest [12:23:28]: testbed apt version: 3.1.11 64s autopkgtest [12:23:29]: @@@@@@@@@@@@@@@@@@@@ test bed setup 64s autopkgtest [12:23:29]: testbed release detected to be: None 65s autopkgtest [12:23:30]: updating testbed package index (apt update) 65s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [87.8 kB] 65s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 65s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 65s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 65s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [49.4 kB] 66s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [9848 B] 66s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [2242 kB] 66s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [138 kB] 66s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 Packages [206 kB] 66s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 c-n-f Metadata [4948 B] 66s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 Packages [107 kB] 66s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 c-n-f Metadata [324 B] 66s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 Packages [1619 kB] 66s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 c-n-f Metadata [48.3 kB] 66s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 Packages [34.8 kB] 66s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 c-n-f Metadata [1700 B] 67s Fetched 4550 kB in 1s (3185 kB/s) 68s Reading package lists... 69s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 69s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 69s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 69s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 70s Reading package lists... 70s Reading package lists... 70s Building dependency tree... 70s Reading state information... 71s Calculating upgrade... 71s The following packages will be upgraded: 71s gcc-15-base libatomic1 libgcc-s1 libstdc++6 publicsuffix 71s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 71s Need to get 1027 kB of archives. 71s After this operation, 14.3 kB of additional disk space will be used. 71s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 libatomic1 arm64 15.2.0-7ubuntu1 [11.2 kB] 71s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 libstdc++6 arm64 15.2.0-7ubuntu1 [760 kB] 72s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 gcc-15-base arm64 15.2.0-7ubuntu1 [58.4 kB] 72s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 libgcc-s1 arm64 15.2.0-7ubuntu1 [61.1 kB] 72s Get:5 http://ftpmaster.internal/ubuntu resolute/main arm64 publicsuffix all 20251016.1743-0.1 [136 kB] 72s dpkg-preconfigure: unable to re-open stdin: No such file or directory 72s Fetched 1027 kB in 1s (1276 kB/s) 73s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83460 files and directories currently installed.) 73s Preparing to unpack .../libatomic1_15.2.0-7ubuntu1_arm64.deb ... 73s Unpacking libatomic1:arm64 (15.2.0-7ubuntu1) over (15.2.0-5ubuntu1) ... 73s Preparing to unpack .../libstdc++6_15.2.0-7ubuntu1_arm64.deb ... 73s Unpacking libstdc++6:arm64 (15.2.0-7ubuntu1) over (15.2.0-5ubuntu1) ... 73s Preparing to unpack .../gcc-15-base_15.2.0-7ubuntu1_arm64.deb ... 73s Unpacking gcc-15-base:arm64 (15.2.0-7ubuntu1) over (15.2.0-5ubuntu1) ... 74s Setting up gcc-15-base:arm64 (15.2.0-7ubuntu1) ... 74s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83460 files and directories currently installed.) 74s Preparing to unpack .../libgcc-s1_15.2.0-7ubuntu1_arm64.deb ... 74s Unpacking libgcc-s1:arm64 (15.2.0-7ubuntu1) over (15.2.0-5ubuntu1) ... 74s Setting up libgcc-s1:arm64 (15.2.0-7ubuntu1) ... 74s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83460 files and directories currently installed.) 74s Preparing to unpack .../publicsuffix_20251016.1743-0.1_all.deb ... 74s Unpacking publicsuffix (20251016.1743-0.1) over (20250328.1952-0.1) ... 74s Setting up libatomic1:arm64 (15.2.0-7ubuntu1) ... 74s Setting up publicsuffix (20251016.1743-0.1) ... 74s Setting up libstdc++6:arm64 (15.2.0-7ubuntu1) ... 74s Processing triggers for libc-bin (2.42-0ubuntu3) ... 74s autopkgtest [12:23:39]: upgrading testbed (apt dist-upgrade and autopurge) 75s Reading package lists... 75s Building dependency tree... 75s Reading state information... 75s Calculating upgrade... 76s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 76s Reading package lists... 76s Building dependency tree... 76s Reading state information... 76s Solving dependencies... 77s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 80s autopkgtest [12:23:45]: testbed running kernel: Linux 6.17.0-5-generic #5-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 22 09:50:31 UTC 2025 80s autopkgtest [12:23:45]: @@@@@@@@@@@@@@@@@@@@ apt-source python-ase 83s Get:1 http://ftpmaster.internal/ubuntu resolute/universe python-ase 3.24.0-1 (dsc) [2638 B] 83s Get:2 http://ftpmaster.internal/ubuntu resolute/universe python-ase 3.24.0-1 (tar) [2597 kB] 83s Get:3 http://ftpmaster.internal/ubuntu resolute/universe python-ase 3.24.0-1 (diff) [10.3 kB] 83s gpgv: Signature made Thu Mar 6 03:39:08 2025 UTC 83s gpgv: using RSA key 23C9A93E585819E9126D0A36573EF1E4BD5A01FA 83s gpgv: Can't check signature: No public key 83s dpkg-source: warning: cannot verify inline signature for ./python-ase_3.24.0-1.dsc: no acceptable signature found 84s autopkgtest [12:23:49]: testing package python-ase version 3.24.0-1 84s autopkgtest [12:23:49]: build not needed 85s autopkgtest [12:23:50]: test command1: preparing testbed 86s Reading package lists... 86s Building dependency tree... 86s Reading state information... 86s Solving dependencies... 86s The following NEW packages will be installed: 86s ase blt fontconfig-config fonts-dejavu-core fonts-dejavu-mono 86s fonts-font-awesome fonts-glyphicons-halflings fonts-lyx libaec0 libblas3 86s libdeflate0 libfontconfig1 libgfortran5 libgomp1 libgraphite2-3 86s libharfbuzz0b libhdf5-310 libhdf5-hl-310 libimagequant0 libjbig0 86s libjpeg-turbo8 libjpeg8 libjs-bootstrap libjs-jquery libjs-jquery-ui 86s liblapack3 liblcms2-2 liblerc4 libnetcdf22 libopenjp2-7 libqhull-r8.0 86s libraqm0 libsharpyuv0 libsymspg2 libsz2 libtcl8.6 libtiff6 libtk8.6 libwebp7 86s libwebpdemux2 libwebpmux3 libxft2 libxrender1 libxslt1.1 libxss1 libzopfli1 86s python-matplotlib-data python3-all python3-ase python3-brotli python3-cftime 86s python3-contourpy python3-cycler python3-dateutil python3-decorator 86s python3-fonttools python3-fs python3-iniconfig python3-kiwisolver 86s python3-lxml python3-lz4 python3-matplotlib python3-mpmath python3-netcdf4 86s python3-numpy python3-numpy-dev python3-packaging python3-pil 86s python3-pil.imagetk python3-platformdirs python3-pluggy python3-pycodcif 86s python3-pytest python3-pytest-mock python3-scipy python3-spglib 86s python3-sympy python3-tk python3-ufolib2 python3-zopfli python3.13-tk 86s python3.14-tk tk8.6-blt2.5 unicode-data x11-common 87s 0 upgraded, 85 newly installed, 0 to remove and 0 not upgraded. 87s Need to get 77.8 MB of archives. 87s After this operation, 352 MB of additional disk space will be used. 87s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-numpy-dev arm64 1:2.2.4+ds-1ubuntu1 [146 kB] 87s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 libblas3 arm64 3.12.1-6build1 [186 kB] 87s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 libgfortran5 arm64 15.2.0-7ubuntu1 [450 kB] 88s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 liblapack3 arm64 3.12.1-6build1 [2340 kB] 90s Get:5 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-numpy arm64 1:2.2.4+ds-1ubuntu1 [3986 kB] 93s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 93s Get:7 http://ftpmaster.internal/ubuntu resolute/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-6 [119 kB] 93s Get:8 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-bootstrap all 3.4.1+dfsg-6 [129 kB] 93s Get:9 http://ftpmaster.internal/ubuntu resolute/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 93s Get:10 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 93s Get:11 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-decorator all 5.2.1-2 [28.1 kB] 93s Get:12 http://ftpmaster.internal/ubuntu resolute/universe arm64 libqhull-r8.0 arm64 2020.2-6build1 [189 kB] 93s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 python3-scipy arm64 1.16.3-1 [17.4 MB] 96s Get:14 http://ftpmaster.internal/ubuntu resolute/universe arm64 libsymspg2 arm64 2.6.0-3build1 [209 kB] 96s Get:15 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-spglib arm64 2.6.0-3build1 [31.7 kB] 96s Get:16 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 96s Get:17 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 96s Get:18 http://ftpmaster.internal/ubuntu resolute/universe arm64 fonts-lyx all 2.4.4-1 [171 kB] 96s Get:19 http://ftpmaster.internal/ubuntu resolute/universe arm64 python-matplotlib-data all 3.10.7+dfsg1-1 [2930 kB] 96s Get:20 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-dateutil all 2.9.0-4 [80.3 kB] 96s Get:21 http://ftpmaster.internal/ubuntu resolute/main arm64 libgomp1 arm64 15.2.0-7ubuntu1 [147 kB] 96s Get:22 http://ftpmaster.internal/ubuntu resolute/main arm64 libimagequant0 arm64 2.18.0-1build1 [37.1 kB] 96s Get:23 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg-turbo8 arm64 2.1.5-4ubuntu2 [165 kB] 96s Get:24 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 96s Get:25 http://ftpmaster.internal/ubuntu resolute/main arm64 liblcms2-2 arm64 2.16-2 [170 kB] 96s Get:26 http://ftpmaster.internal/ubuntu resolute/main arm64 libopenjp2-7 arm64 2.5.3-2.1 [179 kB] 96s Get:27 http://ftpmaster.internal/ubuntu resolute/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB] 96s Get:28 http://ftpmaster.internal/ubuntu resolute/main arm64 libharfbuzz0b arm64 12.1.0-1 [523 kB] 96s Get:29 http://ftpmaster.internal/ubuntu resolute/main arm64 libraqm0 arm64 0.10.3-1 [15.0 kB] 96s Get:30 http://ftpmaster.internal/ubuntu resolute/main arm64 libdeflate0 arm64 1.23-2 [46.4 kB] 96s Get:31 http://ftpmaster.internal/ubuntu resolute/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB] 96s Get:32 http://ftpmaster.internal/ubuntu resolute/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB] 96s Get:33 http://ftpmaster.internal/ubuntu resolute/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB] 96s Get:34 http://ftpmaster.internal/ubuntu resolute/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB] 96s Get:35 http://ftpmaster.internal/ubuntu resolute/main arm64 libtiff6 arm64 4.7.0-3ubuntu3 [196 kB] 96s Get:36 http://ftpmaster.internal/ubuntu resolute/main arm64 libwebpdemux2 arm64 1.5.0-0.1 [12.5 kB] 96s Get:37 http://ftpmaster.internal/ubuntu resolute/main arm64 libwebpmux3 arm64 1.5.0-0.1 [25.4 kB] 96s Get:38 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-pil arm64 11.3.0-1ubuntu2 [492 kB] 96s Get:39 http://ftpmaster.internal/ubuntu resolute/main arm64 libtcl8.6 arm64 8.6.17+dfsg-1 [1024 kB] 96s Get:40 http://ftpmaster.internal/ubuntu resolute/main arm64 fontconfig-config arm64 2.15.0-2.3ubuntu1 [38.1 kB] 96s Get:41 http://ftpmaster.internal/ubuntu resolute/main arm64 libfontconfig1 arm64 2.15.0-2.3ubuntu1 [144 kB] 96s Get:42 http://ftpmaster.internal/ubuntu resolute/main arm64 libxrender1 arm64 1:0.9.12-1 [19.5 kB] 96s Get:43 http://ftpmaster.internal/ubuntu resolute/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB] 96s Get:44 http://ftpmaster.internal/ubuntu resolute/main arm64 x11-common all 1:7.7+24ubuntu1 [22.4 kB] 96s Get:45 http://ftpmaster.internal/ubuntu resolute/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B] 96s Get:46 http://ftpmaster.internal/ubuntu resolute/main arm64 libtk8.6 arm64 8.6.17-1 [811 kB] 96s Get:47 http://ftpmaster.internal/ubuntu resolute/main arm64 python3.14-tk arm64 3.14.0-4 [107 kB] 96s Get:48 http://ftpmaster.internal/ubuntu resolute/main arm64 python3.13-tk arm64 3.13.9-1 [106 kB] 96s Get:49 http://ftpmaster.internal/ubuntu resolute/main arm64 tk8.6-blt2.5 arm64 2.5.3+dfsg-8 [624 kB] 96s Get:50 http://ftpmaster.internal/ubuntu resolute/main arm64 blt arm64 2.5.3+dfsg-8 [4824 B] 96s Get:51 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-tk arm64 3.13.9-1 [8946 B] 96s Get:52 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pil.imagetk arm64 11.3.0-1ubuntu2 [9582 B] 96s Get:53 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-contourpy arm64 1.3.1-1build2 [253 kB] 96s Get:54 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-cycler all 0.12.1-2 [9850 B] 96s Get:55 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-brotli arm64 1.1.0-2build6 [343 kB] 97s Get:56 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-platformdirs all 4.3.7-1 [16.9 kB] 97s Get:57 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-fs all 2.4.16-7 [90.8 kB] 97s Get:58 http://ftpmaster.internal/ubuntu resolute/main arm64 libxslt1.1 arm64 1.1.43-0.3 [172 kB] 97s Get:59 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-lxml arm64 6.0.1-1build1 [2149 kB] 97s Get:60 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-lz4 arm64 4.4.4+dfsg-3 [27.6 kB] 97s Get:61 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-mpmath all 1.3.0-1 [425 kB] 97s Get:62 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-sympy all 1.13.3-5 [4229 kB] 97s Get:63 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-ufolib2 all 0.17.1+dfsg1-1 [33.5 kB] 97s Get:64 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-all arm64 3.13.7-1 [884 B] 97s Get:65 http://ftpmaster.internal/ubuntu resolute/universe arm64 libzopfli1 arm64 1.0.3-3 [108 kB] 97s Get:66 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-zopfli arm64 0.2.3.post1-1 [10.7 kB] 97s Get:67 http://ftpmaster.internal/ubuntu resolute/universe arm64 unicode-data all 16.0.0-1 [9513 kB] 98s Get:68 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-fonttools arm64 4.57.0-2build1 [1648 kB] 98s Get:69 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-kiwisolver arm64 1.4.10~rc0-1 [60.1 kB] 98s Get:70 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-packaging all 25.0-1 [52.8 kB] 98s Get:71 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-matplotlib arm64 3.10.7+dfsg1-1 [17.1 MB] 98s Get:72 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-ase all 3.24.0-1 [1787 kB] 98s Get:73 http://ftpmaster.internal/ubuntu resolute/universe arm64 ase all 3.24.0-1 [31.1 kB] 98s Get:74 http://ftpmaster.internal/ubuntu resolute/universe arm64 libaec0 arm64 1.1.4-2 [22.2 kB] 98s Get:75 http://ftpmaster.internal/ubuntu resolute/universe arm64 libsz2 arm64 1.1.4-2 [5258 B] 99s Get:76 http://ftpmaster.internal/ubuntu resolute/universe arm64 libhdf5-310 arm64 1.14.5+repack-3build1 [1331 kB] 99s Get:77 http://ftpmaster.internal/ubuntu resolute/universe arm64 libhdf5-hl-310 arm64 1.14.5+repack-3build1 [59.8 kB] 99s Get:78 http://ftpmaster.internal/ubuntu resolute/universe arm64 libnetcdf22 arm64 1:4.9.3-1build1 [555 kB] 99s Get:79 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-cftime arm64 1.6.5-1 [485 kB] 99s Get:80 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-iniconfig all 1.1.1-2 [6024 B] 99s Get:81 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-netcdf4 arm64 1.7.2-1build4 [587 kB] 99s Get:82 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pluggy all 1.6.0-1 [21.0 kB] 99s Get:83 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pycodcif arm64 3.11.0+dfsg-1build1 [76.5 kB] 99s Get:84 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pytest all 8.3.5-2 [252 kB] 99s Get:85 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pytest-mock all 3.14.0-3 [11.8 kB] 99s Fetched 77.8 MB in 12s (6419 kB/s) 99s Selecting previously unselected package python3-numpy-dev:arm64. 99s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83460 files and directories currently installed.) 99s Preparing to unpack .../00-python3-numpy-dev_1%3a2.2.4+ds-1ubuntu1_arm64.deb ... 99s Unpacking python3-numpy-dev:arm64 (1:2.2.4+ds-1ubuntu1) ... 99s Selecting previously unselected package libblas3:arm64. 99s Preparing to unpack .../01-libblas3_3.12.1-6build1_arm64.deb ... 99s Unpacking libblas3:arm64 (3.12.1-6build1) ... 99s Selecting previously unselected package libgfortran5:arm64. 99s Preparing to unpack .../02-libgfortran5_15.2.0-7ubuntu1_arm64.deb ... 99s Unpacking libgfortran5:arm64 (15.2.0-7ubuntu1) ... 99s Selecting previously unselected package liblapack3:arm64. 99s Preparing to unpack .../03-liblapack3_3.12.1-6build1_arm64.deb ... 99s Unpacking liblapack3:arm64 (3.12.1-6build1) ... 99s Selecting previously unselected package python3-numpy. 99s Preparing to unpack .../04-python3-numpy_1%3a2.2.4+ds-1ubuntu1_arm64.deb ... 99s Unpacking python3-numpy (1:2.2.4+ds-1ubuntu1) ... 100s Selecting previously unselected package fonts-font-awesome. 100s Preparing to unpack .../05-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 100s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 100s Selecting previously unselected package fonts-glyphicons-halflings. 100s Preparing to unpack .../06-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-6_all.deb ... 100s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-6) ... 100s Selecting previously unselected package libjs-bootstrap. 100s Preparing to unpack .../07-libjs-bootstrap_3.4.1+dfsg-6_all.deb ... 100s Unpacking libjs-bootstrap (3.4.1+dfsg-6) ... 100s Selecting previously unselected package libjs-jquery. 100s Preparing to unpack .../08-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 100s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 100s Selecting previously unselected package libjs-jquery-ui. 100s Preparing to unpack .../09-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 100s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 100s Selecting previously unselected package python3-decorator. 100s Preparing to unpack .../10-python3-decorator_5.2.1-2_all.deb ... 100s Unpacking python3-decorator (5.2.1-2) ... 100s Selecting previously unselected package libqhull-r8.0:arm64. 100s Preparing to unpack .../11-libqhull-r8.0_2020.2-6build1_arm64.deb ... 100s Unpacking libqhull-r8.0:arm64 (2020.2-6build1) ... 100s Selecting previously unselected package python3-scipy. 100s Preparing to unpack .../12-python3-scipy_1.16.3-1_arm64.deb ... 100s Unpacking python3-scipy (1.16.3-1) ... 101s Selecting previously unselected package libsymspg2:arm64. 101s Preparing to unpack .../13-libsymspg2_2.6.0-3build1_arm64.deb ... 101s Unpacking libsymspg2:arm64 (2.6.0-3build1) ... 101s Selecting previously unselected package python3-spglib. 101s Preparing to unpack .../14-python3-spglib_2.6.0-3build1_arm64.deb ... 101s Unpacking python3-spglib (2.6.0-3build1) ... 101s Selecting previously unselected package fonts-dejavu-mono. 101s Preparing to unpack .../15-fonts-dejavu-mono_2.37-8_all.deb ... 101s Unpacking fonts-dejavu-mono (2.37-8) ... 101s Selecting previously unselected package fonts-dejavu-core. 101s Preparing to unpack .../16-fonts-dejavu-core_2.37-8_all.deb ... 101s Unpacking fonts-dejavu-core (2.37-8) ... 101s Selecting previously unselected package fonts-lyx. 101s Preparing to unpack .../17-fonts-lyx_2.4.4-1_all.deb ... 101s Unpacking fonts-lyx (2.4.4-1) ... 101s Selecting previously unselected package python-matplotlib-data. 101s Preparing to unpack .../18-python-matplotlib-data_3.10.7+dfsg1-1_all.deb ... 101s Unpacking python-matplotlib-data (3.10.7+dfsg1-1) ... 101s Selecting previously unselected package python3-dateutil. 101s Preparing to unpack .../19-python3-dateutil_2.9.0-4_all.deb ... 101s Unpacking python3-dateutil (2.9.0-4) ... 101s Selecting previously unselected package libgomp1:arm64. 101s Preparing to unpack .../20-libgomp1_15.2.0-7ubuntu1_arm64.deb ... 101s Unpacking libgomp1:arm64 (15.2.0-7ubuntu1) ... 101s Selecting previously unselected package libimagequant0:arm64. 101s Preparing to unpack .../21-libimagequant0_2.18.0-1build1_arm64.deb ... 101s Unpacking libimagequant0:arm64 (2.18.0-1build1) ... 101s Selecting previously unselected package libjpeg-turbo8:arm64. 101s Preparing to unpack .../22-libjpeg-turbo8_2.1.5-4ubuntu2_arm64.deb ... 101s Unpacking libjpeg-turbo8:arm64 (2.1.5-4ubuntu2) ... 101s Selecting previously unselected package libjpeg8:arm64. 101s Preparing to unpack .../23-libjpeg8_8c-2ubuntu11_arm64.deb ... 101s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 101s Selecting previously unselected package liblcms2-2:arm64. 101s Preparing to unpack .../24-liblcms2-2_2.16-2_arm64.deb ... 101s Unpacking liblcms2-2:arm64 (2.16-2) ... 101s Selecting previously unselected package libopenjp2-7:arm64. 101s Preparing to unpack .../25-libopenjp2-7_2.5.3-2.1_arm64.deb ... 101s Unpacking libopenjp2-7:arm64 (2.5.3-2.1) ... 101s Selecting previously unselected package libgraphite2-3:arm64. 101s Preparing to unpack .../26-libgraphite2-3_1.3.14-2ubuntu1_arm64.deb ... 101s Unpacking libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 101s Selecting previously unselected package libharfbuzz0b:arm64. 101s Preparing to unpack .../27-libharfbuzz0b_12.1.0-1_arm64.deb ... 101s Unpacking libharfbuzz0b:arm64 (12.1.0-1) ... 101s Selecting previously unselected package libraqm0:arm64. 102s Preparing to unpack .../28-libraqm0_0.10.3-1_arm64.deb ... 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libtiff6:arm64. 102s Preparing to unpack .../34-libtiff6_4.7.0-3ubuntu3_arm64.deb ... 102s Unpacking libtiff6:arm64 (4.7.0-3ubuntu3) ... 102s Selecting previously unselected package libwebpdemux2:arm64. 102s Preparing to unpack .../35-libwebpdemux2_1.5.0-0.1_arm64.deb ... 102s Unpacking libwebpdemux2:arm64 (1.5.0-0.1) ... 102s Selecting previously unselected package libwebpmux3:arm64. 102s Preparing to unpack .../36-libwebpmux3_1.5.0-0.1_arm64.deb ... 102s Unpacking libwebpmux3:arm64 (1.5.0-0.1) ... 102s Selecting previously unselected package python3-pil:arm64. 102s Preparing to unpack .../37-python3-pil_11.3.0-1ubuntu2_arm64.deb ... 102s Unpacking python3-pil:arm64 (11.3.0-1ubuntu2) ... 102s Selecting previously unselected package libtcl8.6:arm64. 102s Preparing to unpack .../38-libtcl8.6_8.6.17+dfsg-1_arm64.deb ... 102s Unpacking libtcl8.6:arm64 (8.6.17+dfsg-1) ... 102s Selecting previously unselected package fontconfig-config. 102s Preparing to unpack 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python3-pytest. 106s Preparing to unpack .../83-python3-pytest_8.3.5-2_all.deb ... 106s Unpacking python3-pytest (8.3.5-2) ... 106s Selecting previously unselected package python3-pytest-mock. 106s Preparing to unpack .../84-python3-pytest-mock_3.14.0-3_all.deb ... 106s Unpacking python3-pytest-mock (3.14.0-3) ... 106s Setting up libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 106s Setting up liblcms2-2:arm64 (2.16-2) ... 106s Setting up python3-iniconfig (1.1.1-2) ... 106s Setting up libsharpyuv0:arm64 (1.5.0-0.1) ... 106s Setting up liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 106s Setting up libxrender1:arm64 (1:0.9.12-1) ... 106s Setting up python3-lz4 (4.4.4+dfsg-3) ... 106s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-6) ... 106s Setting up fonts-lyx (2.4.4-1) ... 106s Setting up x11-common (1:7.7+24ubuntu1) ... 107s Setting up libdeflate0:arm64 (1.23-2) ... 107s Setting up libqhull-r8.0:arm64 (2020.2-6build1) ... 107s Setting up python3-all (3.13.7-1) ... 107s Setting up python3-pycodcif (3.11.0+dfsg-1build1) ... 107s Setting up libgomp1:arm64 (15.2.0-7ubuntu1) ... 107s Setting up libjbig0:arm64 (2.1-6.1ubuntu2) ... 107s Setting up libaec0:arm64 (1.1.4-2) ... 107s Setting up python3-platformdirs (4.3.7-1) ... 107s Setting up python3-fs (2.4.16-7) ... 107s Setting up unicode-data (16.0.0-1) ... 107s Setting up libsymspg2:arm64 (2.6.0-3build1) ... 107s Setting up python3-decorator (5.2.1-2) ... 107s Setting up libblas3:arm64 (3.12.1-6build1) ... 107s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 107s Setting up python3-packaging (25.0-1) ... 107s Setting up libzopfli1 (1.0.3-3) ... 107s Setting up python3-brotli (1.1.0-2build6) ... 108s Setting up python3-cycler (0.12.1-2) ... 108s Setting up libimagequant0:arm64 (2.18.0-1build1) ... 108s Setting up fonts-dejavu-mono (2.37-8) ... 108s Setting up python3-kiwisolver (1.4.10~rc0-1) ... 108s Setting up python3-numpy-dev:arm64 (1:2.2.4+ds-1ubuntu1) ... 108s Setting up libtcl8.6:arm64 (8.6.17+dfsg-1) ... 108s Setting up fonts-dejavu-core (2.37-8) ... 108s Setting up libjpeg-turbo8:arm64 (2.1.5-4ubuntu2) ... 108s Setting up libgfortran5:arm64 (15.2.0-7ubuntu1) ... 108s Setting up python3-pluggy (1.6.0-1) ... 108s Setting up libwebp7:arm64 (1.5.0-0.1) ... 108s Setting up libxslt1.1:arm64 (1.1.43-0.3) ... 108s Setting up libopenjp2-7:arm64 (2.5.3-2.1) ... 108s Setting up libharfbuzz0b:arm64 (12.1.0-1) ... 108s Setting up python3-dateutil (2.9.0-4) ... 108s Setting up libxss1:arm64 (1:1.2.3-1build3) ... 108s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 108s Setting up python3-mpmath (1.3.0-1) ... 109s Setting up python-matplotlib-data (3.10.7+dfsg1-1) ... 109s Setting up libwebpmux3:arm64 (1.5.0-0.1) ... 109s Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 109s Setting up libsz2:arm64 (1.1.4-2) ... 109s Setting up libjs-bootstrap (3.4.1+dfsg-6) ... 109s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 109s Setting up python3-sympy (1.13.3-5) ... 115s Setting up liblapack3:arm64 (3.12.1-6build1) ... 115s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 115s Setting up fontconfig-config (2.15.0-2.3ubuntu1) ... 115s Setting up python3-pytest (8.3.5-2) ... 115s Setting up libwebpdemux2:arm64 (1.5.0-0.1) ... 115s Setting up python3-zopfli (0.2.3.post1-1) ... 116s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 116s Setting up libraqm0:arm64 (0.10.3-1) ... 116s Setting up python3-numpy (1:2.2.4+ds-1ubuntu1) ... 117s Setting up libhdf5-310:arm64 (1.14.5+repack-3build1) ... 117s Setting up python3-pytest-mock (3.14.0-3) ... 118s Setting up python3-lxml:arm64 (6.0.1-1build1) ... 118s Setting up libtiff6:arm64 (4.7.0-3ubuntu3) ... 118s Setting up python3-contourpy (1.3.1-1build2) ... 118s Setting up libfontconfig1:arm64 (2.15.0-2.3ubuntu1) ... 118s Setting up python3-spglib (2.6.0-3build1) ... 118s Setting up libhdf5-hl-310:arm64 (1.14.5+repack-3build1) ... 118s Setting up libxft2:arm64 (2.3.6-1build1) ... 118s Setting up python3-scipy (1.16.3-1) ... 122s Setting up libtk8.6:arm64 (8.6.17-1) ... 122s Setting up libnetcdf22:arm64 (1:4.9.3-1build1) ... 122s Setting up python3.13-tk (3.13.9-1) ... 122s Setting up python3-pil:arm64 (11.3.0-1ubuntu2) ... 122s Setting up python3-cftime (1.6.5-1) ... 122s Setting up python3-netcdf4 (1.7.2-1build4) ... 123s Setting up tk8.6-blt2.5 (2.5.3+dfsg-8) ... 123s Setting up python3.14-tk (3.14.0-4) ... 123s Setting up blt (2.5.3+dfsg-8) ... 123s Setting up python3-tk:arm64 (3.13.9-1) ... 123s Setting up python3-pil.imagetk:arm64 (11.3.0-1ubuntu2) ... 123s Setting up python3-fonttools (4.57.0-2build1) ... 124s Setting up python3-ufolib2 (0.17.1+dfsg1-1) ... 124s Setting up python3-matplotlib (3.10.7+dfsg1-1) ... 125s Setting up python3-ase (3.24.0-1) ... 127s Setting up ase (3.24.0-1) ... 127s Processing triggers for libc-bin (2.42-0ubuntu3) ... 127s Processing triggers for man-db (2.13.1-1) ... 129s autopkgtest [12:24:34]: test command1: for py in $(py3versions -s); do cd "$AUTOPKGTEST_TMP"; $py -m ase test --pytest -p no:cacheprovider; done 129s autopkgtest [12:24:34]: test command1: [----------------------- 129s About to run pytest with these parameters: 129s -p 129s no:cacheprovider 139s ============================= test session starts ============================== 139s platform linux -- Python 3.13.9, pytest-8.3.5, pluggy-1.6.0 139s 139s Libraries 139s ========= 139s 139s ase-3.24.0 /usr/lib/python3/dist-packages/ase 139s numpy-2.2.4 /usr/lib/python3/dist-packages/numpy 139s scipy-1.16.3 /usr/lib/python3/dist-packages/scipy 139s matplotlib-3.10.7+dfsg1 /usr/lib/python3/dist-packages/matplotlib 139s spglib-2.6.0 /usr/lib/python3/dist-packages/spglib 139s ase_ext not installed 139s flask not installed 139s psycopg2 not installed 139s pyamg not installed 139s 139s 139s Calculators 139s =========== 139s Config: No configuration file specified 139s Datafiles: ase-datafiles package not installed 139s 139s [ ] abinit not installed: 'abinit' 139s [ ] ace cfg= 139s [ ] aims not installed: 'aims' 139s [ ] amber cfg= 139s [ ] asap not installed: asap3 139s [ ] castep not installed: 'castep' 139s [ ] cp2k not installed: 'cp2k' 139s [ ] crystal cfg= 139s [ ] demon cfg= 139s [ ] demonnano cfg= 139s [ ] dftb not installed: No 'dftb' section 139s [ ] dftd3 not installed: 'dftd3' 139s [ ] dmol cfg= 139s [ ] elk not installed: No 'elk' section 139s [ ] espresso not installed: 'espresso' 139s [ ] exciting not installed: 'exciting' 139s [ ] gamess_us cfg= 139s [ ] gaussian cfg= 139s [ ] gpaw not installed: gpaw 139s [ ] gromacs not installed: 'gromacs' 139s [ ] gulp cfg= 139s [ ] hotbit cfg= 139s [ ] lammpslib not installed: missing python wrappers: cannot import lammps 139s [ ] lammpsrun not installed: 'lammps' 139s [ ] mopac not installed: No 'mopac' section 139s [ ] nwchem not installed: No 'nwchem' section 139s [ ] octopus not installed: 'octopus' 139s [ ] onetep cfg= 139s [ ] openmx not installed: 'openmx' 139s [ ] orca not installed: 'orca' 139s [ ] plumed not installed: 139s [ ] psi4 not installed: psi4 139s [ ] qchem cfg= 139s [ ] siesta not installed: No 'siesta' section 139s [ ] turbomole cfg= 139s [ ] vasp not installed: 'vasp' 139s 139s * Use --calculators option to select calculators. 139s 139s * See "ase test --help-calculators" on how to configure calculators. 139s 139s * This listing only includes external calculators known by the test 139s system. Others are "configured" by setting an environment variable 139s like "ASE_xxx_COMMAND" in order to allow tests to run. Please see 139s the documentation of that individual calculator. 139s 139s 139s rootdir: /usr/lib/python3/dist-packages/ase/test 139s configfile: pytest.ini 139s plugins: typeguard-4.4.2, mock-3.14.0 139s collected 3522 items 139s 139s atoms/test_atom.py .. [ 0%] 139s atoms/test_atom_scaled_pos.py ... [ 0%] 139s atoms/test_atoms.py .............. [ 0%] 139s atoms/test_atoms_angle.py . [ 0%] 139s atoms/test_atoms_distance.py .. [ 0%] 139s atoms/test_atoms_formula.py . [ 0%] 139s atoms/test_atoms_get_duplicates.py . [ 0%] 139s atoms/test_atoms_get_positions.py ... [ 0%] 139s atoms/test_atoms_getitem.py ............. [ 1%] 139s atoms/test_atoms_indices.py . [ 1%] 139s atoms/test_atoms_info_copy.py . [ 1%] 139s atoms/test_atoms_instantiation.py .... [ 1%] 139s atoms/test_build.py . [ 1%] 139s atoms/test_center.py ........... [ 1%] 139s atoms/test_center_nonperiodic.py . [ 1%] 139s atoms/test_compare_atoms.py . [ 1%] 139s atoms/test_deprecated_get_set.py ... [ 1%] 139s atoms/test_get_angles.py . [ 1%] 139s atoms/test_h2.py . [ 1%] 139s atoms/test_mic.py . [ 1%] 139s atoms/test_momenta_velocities.py ... [ 1%] 139s atoms/test_permute_axes.py . [ 1%] 139s atoms/test_rotate.py . [ 2%] 139s atoms/test_rotate_euler.py . [ 2%] 139s atoms/test_scaled_positions.py . [ 2%] 139s atoms/test_set_get_angle.py . [ 2%] 139s bandstructure/test_bandpath.py ....... [ 2%] 139s bandstructure/test_bandstructure.py ... [ 2%] 139s bandstructure/test_bandstructure_json.py . [ 2%] 143s bandstructure/test_bandstructure_many.py ....................... [ 3%] 143s bandstructure/test_bandstructure_transform_mcl.py . [ 3%] 143s bandstructure/test_resolve_custom_kpoints.py ..... [ 3%] 143s bravais/test_2d_cell_pbc.py ..... [ 3%] 144s bravais/test_bravais_type_engine.py ................. [ 3%] 144s bravais/test_eps.py .. [ 3%] 144s bravais/test_hex.py . [ 3%] 144s bravais/test_lattices.py ............................................... [ 5%] 144s .. [ 5%] 144s bravais/test_line_lattice.py . [ 5%] 144s bravais/test_main.py ......................... [ 6%] 144s bravais/test_orcc_mcl.py . [ 6%] 144s bravais/test_reduce.py . [ 6%] 144s bravais/test_standard_form.py ....................... [ 6%] 144s build_/test_attach.py .... [ 6%] 145s build_/test_build_bulk.py .............................................. [ 8%] 145s ........................................................................ [ 10%] 145s ........................................................................ [ 12%] 145s .................................................. [ 13%] 145s build_/test_bulk.py .......... [ 13%] 145s build_/test_connected.py .... [ 14%] 145s build_/test_minimize_rotation_and_translation.py .. [ 14%] 146s build_/test_supercells.py .............................................. [ 15%] 149s .............. [ 15%] 149s build_/test_surface.py ... [ 15%] 149s build_/test_surface_stack.py . [ 15%] 149s build_/test_surface_terminations.py . [ 16%] 149s calculator/abinit/test_abinit_cmdline.py s [ 16%] 149s calculator/abinit/test_main.py sssssssss [ 16%] 149s calculator/ace/test_ace.py s [ 16%] 149s calculator/ace/test_ace_calculator.py . [ 16%] 149s calculator/aims/test_H2O_aims.py s [ 16%] 149s calculator/aims/test_aims_interface.py s [ 16%] 149s calculator/aims/test_version.py . [ 16%] 149s calculator/amber/test_amber.py s [ 16%] 149s calculator/castep/test_castep_interface.py ........ [ 16%] 149s calculator/cp2k/test_cp2k_H2_None.py s [ 16%] 149s calculator/cp2k/test_cp2k_dcd.py s [ 16%] 149s calculator/cp2k/test_cp2k_many.py ssssssssssss [ 17%] 149s calculator/cp2k/test_cp2k_restart.py . [ 17%] 149s calculator/cp2k/test_cp2k_stress.py s [ 17%] 149s calculator/crystal/test_bulk.py s [ 17%] 149s calculator/crystal/test_graphene.py s [ 17%] 149s calculator/crystal/test_molecule.py s [ 17%] 149s calculator/demon/test_h2o.py s [ 17%] 149s calculator/demon/test_h2o_xas_xes.py s [ 17%] 149s calculator/demonnano/test_h2o.py s [ 17%] 149s calculator/dftb/test_dftb_bandstructure.py s [ 17%] 149s calculator/dftb/test_dftb_relax_bulk.py .s [ 17%] 149s calculator/dftb/test_dftb_relax_dimer.py s [ 17%] 149s calculator/dftb/test_dftb_relax_surface.py s [ 17%] 149s calculator/dftb/test_dipole.py s [ 17%] 149s calculator/dftb/test_xtb_static.py s [ 17%] 149s calculator/dmol/test_Al_dmol.py s [ 17%] 149s calculator/dmol/test_water_dmol.py s [ 17%] 149s calculator/elk/test_elk.py ss [ 17%] 149s calculator/espresso/test_espresso.py ..ssss.. [ 17%] 149s calculator/exciting/test_exciting.py sssss [ 18%] 149s calculator/exciting/test_runner.py ssss. [ 18%] 149s calculator/gamess_us/test_basis_ecp.py s [ 18%] 149s calculator/gamess_us/test_gamess_us.py sssss [ 18%] 149s calculator/gaussian/test_h2of.py s [ 18%] 149s calculator/gaussian/test_optimizer_irc.py ss [ 18%] 149s calculator/gaussian/test_water.py s [ 18%] 149s calculator/gpaw_/test_no_spin_and_spin.py s [ 18%] 149s calculator/gpaw_/test_read_text_output.py . [ 18%] 151s calculator/gpaw_/test_wannier.py ...........................ssssssssssss [ 19%] 151s ssssssssssssssssssssssssssssssssssssssssssssssssssssssss....sss [ 21%] 151s calculator/gromacs/test_gromacs.py .ss [ 21%] 151s calculator/kim/test_cutoff_skin.py s [ 21%] 151s calculator/kim/test_energy_forces_stress.py s [ 21%] 151s calculator/kim/test_modify_parameters.py s [ 21%] 151s calculator/kim/test_multi_neighlist.py s [ 21%] 151s calculator/kim/test_relax.py s [ 21%] 151s calculator/kim/test_single_atom.py s [ 21%] 151s calculator/kim/test_update_coords.py s [ 21%] 151s calculator/kim/test_update_neighbor_parameters.py s [ 21%] 151s calculator/lammps/test_prism.py ........................................ [ 22%] 151s . [ 22%] 151s calculator/lammpslib/test_Pt_stress_cellopt.py s [ 22%] 151s calculator/lammpslib/test_lammpslib_change_cell_bcs.py s [ 22%] 151s calculator/lammpslib/test_lammpslib_neighlist_bug.py s [ 22%] 151s calculator/lammpslib/test_lammpslib_post_changebox_cmds.py s [ 22%] 151s calculator/lammpslib/test_lammpslib_simple.py sssss [ 23%] 151s calculator/lammpslib/test_lammpslib_small_nonperiodic.py s [ 23%] 151s calculator/lammpsrun/test_Ar_minimize.py ss [ 23%] 151s calculator/lammpsrun/test_NaCl_minimize.py s [ 23%] 151s calculator/lammpsrun/test_Pt_md_constraints_multistep.py s [ 23%] 151s calculator/lammpsrun/test_Pt_stress_cellopt.py s [ 23%] 151s calculator/lammpsrun/test_lammps_units.py s [ 23%] 151s calculator/lammpsrun/test_no_data_file_wrap.py s [ 23%] 151s calculator/nwchem/test_nwchem_bands.py s [ 23%] 151s calculator/nwchem/test_nwchem_broken_symmetry.py s [ 23%] 151s calculator/nwchem/test_nwchem_cmdline.py s [ 23%] 151s calculator/nwchem/test_nwchem_eigenvalues.py ss [ 23%] 151s calculator/nwchem/test_nwchem_h3o2m.py s [ 23%] 151s calculator/nwchem/test_nwchem_multitask.py sss [ 23%] 151s calculator/nwchem/test_nwchem_parser.py . [ 23%] 151s calculator/nwchem/test_nwchem_runmany.py ssssssssssssss [ 24%] 151s calculator/nwchem/test_nwchem_spin_symmetry.py s [ 24%] 151s calculator/nwchem/test_nwchem_stress.py s [ 24%] 151s calculator/nwchem/test_nwchem_version.py s [ 24%] 151s calculator/octopus/test_big.py ss [ 24%] 151s calculator/onetep/test_onetep.py s [ 24%] 151s calculator/openmx/test_md.py s [ 24%] 151s calculator/openmx/test_version.py . [ 24%] 151s calculator/plumed/test_plumed.py ssssss [ 24%] 151s calculator/psi4/test_psi4_HF_3_21G.py s [ 24%] 151s calculator/qchem/test_qchem_calculator.py s [ 24%] 151s calculator/siesta/lrtddft/test_siesta_lrtddft.py s [ 24%] 151s calculator/siesta/lrtddft/test_siesta_raman.py s [ 24%] 151s calculator/siesta/test_bandstructure.py s [ 24%] 151s calculator/siesta/test_dos.py s [ 24%] 151s calculator/siesta/test_fdf_io.py s [ 24%] 151s calculator/siesta/test_siesta_read_eigenvalues.py .s [ 24%] 151s calculator/siesta/test_siesta_version.py . [ 24%] 151s calculator/siesta/test_siesta_zmat.py sss [ 24%] 151s calculator/siesta/test_write_input.py sssss [ 24%] 151s calculator/socketio/test_h2_stiffness.py sssss [ 25%] 151s calculator/socketio/test_integration.py ss [ 25%] 151s calculator/socketio/test_ipi_protocol_bfgs.py ss [ 25%] 153s calculator/socketio/test_python_interface.py . [ 25%] 153s calculator/socketio/test_socket_io_mpi_line.py . [ 25%] 153s calculator/test_al.py s [ 25%] 153s calculator/test_bond_polarizability.py ... [ 25%] 153s calculator/test_calculator.py .. [ 25%] 153s calculator/test_ch4_energy.py sssssssssss [ 25%] 153s calculator/test_command.py ............................................. [ 27%] 153s .................. [ 27%] 153s calculator/test_dftd3.py sssssssssssssss [ 27%] 153s calculator/test_eam.py . [ 27%] 153s calculator/test_eam_run.py sssssssss [ 28%] 153s calculator/test_fd.py . [ 28%] 153s calculator/test_gulp.py s [ 28%] 153s calculator/test_gulp_opt.py s [ 28%] 153s calculator/test_h2.py sss [ 28%] 153s calculator/test_h2_bond_force.py sssssss [ 28%] 153s calculator/test_h2morse.py ..... [ 28%] 153s calculator/test_harmonic.py ...... [ 28%] 153s calculator/test_lj.py ....... [ 29%] 153s calculator/test_mopac.py ss [ 29%] 153s calculator/test_mopac_version.py ... [ 29%] 154s calculator/test_morse.py .... [ 29%] 154s calculator/test_orca.py .sssssss [ 29%] 154s calculator/test_orca_qmmm.py s [ 29%] 154s calculator/test_polarizability.py . [ 29%] 154s calculator/test_si_stress.py sssss [ 29%] 157s calculator/test_subprocess_calculator.py ..s. [ 29%] 157s calculator/test_traj.py sssss.sss [ 30%] 157s calculator/test_ts09.py .. [ 30%] 157s calculator/turbomole/test_turbomole_2h2o.py s [ 30%] 157s calculator/turbomole/test_turbomole_H2.py ss [ 30%] 157s calculator/turbomole/test_turbomole_au13.py s [ 30%] 157s calculator/turbomole/test_turbomole_calculator.py .... [ 30%] 157s calculator/turbomole/test_turbomole_h2o.py ss [ 30%] 157s calculator/turbomole/test_turbomole_h3o2m.py s [ 30%] 157s calculator/turbomole/test_turbomole_optimizer.py ss [ 30%] 157s calculator/turbomole/test_turbomole_parameters.py ............. [ 30%] 157s calculator/turbomole/test_turbomole_qmmm.py s [ 30%] 157s calculator/turbomole/test_turbomole_reader.py . [ 31%] 157s calculator/turbomole/test_turbomole_statpt.py s [ 31%] 157s calculator/vasp/test_chgcar.py . [ 31%] 157s calculator/vasp/test_vasp_Al_volrelax.py s [ 31%] 157s calculator/vasp/test_vasp_calculator.py ..................... [ 31%] 157s calculator/vasp/test_vasp_charge.py ssssss [ 31%] 157s calculator/vasp/test_vasp_check_state.py s [ 31%] 157s calculator/vasp/test_vasp_co.py s [ 31%] 157s calculator/vasp/test_vasp_converge.py . [ 31%] 157s calculator/vasp/test_vasp_errors.py . [ 31%] 157s calculator/vasp/test_vasp_freq.py s [ 31%] 157s calculator/vasp/test_vasp_get_dos.py s [ 32%] 157s calculator/vasp/test_vasp_incar.py .......... [ 32%] 157s calculator/vasp/test_vasp_input.py ...................... [ 32%] 157s calculator/vasp/test_vasp_kpoints.py ....ss... [ 33%] 157s calculator/vasp/test_vasp_potcar.py ss [ 33%] 157s calculator/vasp/test_vasp_setup.py sssssss [ 33%] 157s calculator/vasp/test_vasp_wdir.py s [ 33%] 157s calculator/vasp/test_vasp_xml.py s [ 33%] 157s calculator/vasp/test_version.py . [ 33%] 157s cell/test_cell.py ........... [ 33%] 157s cell/test_cell_completion.py . [ 33%] 157s cell/test_cell_conv.py . [ 33%] 157s cell/test_cell_uncompletion.py .. [ 33%] 158s cell/test_conventional_map.py ....................... [ 34%] 158s cell/test_minkowski_reduce.py ....................... [ 35%] 158s cell/test_niggli.py .................... [ 35%] 158s cell/test_niggli_ndim.py ............................ [ 36%] 158s cell/test_niggli_op.py . [ 36%] 158s cell/test_standard_form.py . [ 36%] 158s cell/test_supercell.py .... [ 36%] 159s cli/test_ag.py . [ 36%] 160s cli/test_bandstructure.py . [ 36%] 164s cli/test_bzplot.py ... [ 36%] 164s cli/test_complete.py . [ 36%] 164s cli/test_convert.py . [ 36%] 169s cli/test_diff.py ......... [ 37%] 171s cli/test_dimensionality.py .... [ 37%] 174s cli/test_exec.py ..... [ 37%] 174s cli/test_imports.py . [ 37%] 177s cli/test_info.py ..... [ 37%] 178s cli/test_run.py . [ 37%] 178s constraints/test_CO2linear_Au111.py .. [ 37%] 179s constraints/test_external_force.py . [ 37%] 179s constraints/test_fix_bond_length_mic.py .. [ 37%] 184s constraints/test_fix_symmetry.py ........... [ 38%] 184s constraints/test_fixatoms.py . [ 38%] 186s constraints/test_fixbondlength_CO2_Au111.py .. [ 38%] 186s constraints/test_fixbonds.py . [ 38%] 186s constraints/test_fixcartesian.py .. [ 38%] 186s constraints/test_fixcom.py ... [ 38%] 186s constraints/test_fixedline_fixedplane.py ............................... [ 39%] 187s ............. [ 39%] 187s constraints/test_fixedmode.py . [ 39%] 188s constraints/test_fixinternals.py ....... [ 39%] 188s constraints/test_fixscaled.py .. [ 39%] 188s constraints/test_fixsubsetcom.py ... [ 40%] 188s constraints/test_getindices.py . [ 40%] 189s constraints/test_hookean.py . [ 40%] 189s constraints/test_hookean_pbc.py . [ 40%] 189s constraints/test_mirror.py . [ 40%] 189s constraints/test_negativeindex.py . [ 40%] 189s constraints/test_parameteric_constr.py . [ 40%] 189s constraints/test_repeat_FixAtoms.py . [ 40%] 189s constraints/test_setpos.py . [ 40%] 193s db/test_cli.py ...... [ 40%] 207s db/test_db.py ..sss [ 40%] 207s db/test_db2.py ..xxx. [ 40%] 207s db/test_db_web.py ssss. [ 40%] 207s db/test_jsondb.py . [ 40%] 207s db/test_metadata.py .. [ 40%] 207s db/test_mysql.py ssssss [ 41%] 207s db/test_o2b2o.py . [ 41%] 207s db/test_row.py . [ 41%] 208s db/test_sql_db_ext_tables.py .xxx.xxx.xxx.xxx.xxx.xxx [ 41%] 209s db/test_sqlite.py .... [ 41%] 209s db/test_table.py . [ 42%] 209s db/test_update.py .. [ 42%] 209s dft/test_bandgap.py . [ 42%] 209s dft/test_bee.py ... [ 42%] 209s dft/test_bz.py . [ 42%] 209s dft/test_dos.py . [ 42%] 209s dft/test_hex.py . [ 42%] 209s dft/test_interpolate.py . [ 42%] 209s dft/test_kpt_density_monkhorst_pack.py . [ 42%] 209s dft/test_kpts_size_offsets.py ........ [ 42%] 211s dft/test_min_distance_monkhorst_pack.py ... [ 42%] 211s dft/test_monoclinic.py . [ 42%] 211s emt/test_emt.py . [ 42%] 211s emt/test_emt1.py . [ 42%] 211s emt/test_emt2.py . [ 42%] 211s emt/test_emt_h3o2m.py . [ 42%] 211s emt/test_emt_stress.py . [ 42%] 212s filter/test_cellfilter.py sssssssssssssssssss [ 43%] 212s filter/test_filter.py . [ 43%] 212s filter/test_strain.py ss [ 43%] 212s filter/test_strain_emt.py . [ 43%] 212s fio/aims/test_aims_out.py ......... [ 43%] 212s fio/aims/test_aims_out_chunks.py ....................................... [ 44%] 212s ............................................................... [ 46%] 212s fio/aims/test_geometry.py ........... [ 46%] 212s fio/aims/test_write_control.py ...x.......x [ 47%] 212s fio/castep/test_castep_reader.py ............... [ 47%] 212s fio/castep/test_read_bands.py . [ 47%] 212s fio/exciting/test_exciting.py ssssss [ 47%] 212s fio/octopus/test_input.py .... [ 48%] 212s fio/octopus/test_output.py ...... [ 48%] 212s fio/test_abinit.py ..... [ 48%] 212s fio/test_ace.py .. [ 48%] 212s fio/test_amber.py ... [ 48%] 212s fio/test_animate.py . [ 48%] 212s fio/test_atoms_bytes.py . [ 48%] 212s fio/test_bundletrajectory.py ...... [ 48%] 213s fio/test_castep.py ........... 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[ 97%] 310s test_util.py ......................... [ 98%] 310s test_versionnumber.py . [ 98%] 310s test_x3d.py s [ 98%] 311s test_xrdebye.py ... [ 98%] 311s test_xwopen.py ... [ 98%] 311s test_zmatrix.py .... [ 98%] 312s transport/test_transport_calculator.py . [ 98%] 313s vibrations/test_albrecht.py .... [ 98%] 313s vibrations/test_bond_polarizability_raman.py ... [ 98%] 313s vibrations/test_combine.py . [ 98%] 313s vibrations/test_folding.py . [ 98%] 313s vibrations/test_franck_condon.py ... [ 98%] 313s vibrations/test_pickle2json.py . [ 98%] 314s vibrations/test_placzek.py .... [ 98%] 314s vibrations/test_profeta_albrecht.py . [ 98%] 314s vibrations/test_vib.py ................................... [ 99%] 314s vibrations/test_vibrations_example.py . [100%] 314s 314s =============================== warnings summary =============================== 314s :488 314s :488: RuntimeWarning: numpy.ndarray size changed, may indicate binary incompatibility. Expected 16 from C header, got 96 from PyObject 314s 314s calculator/turbomole/test_turbomole_calculator.py::test_turbomole_empty 314s /usr/lib/python3/dist-packages/_pytest/logging.py:353: ResourceWarning: unclosed file <_io.FileIO name='/dev/null' mode='wb' closefd=True> 314s def __enter__(self) -> _HandlerType: 314s Enable tracemalloc to get traceback where the object was allocated. 314s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 314s 314s constraints/test_fix_symmetry.py::test_fail_md 314s /usr/lib/python3/dist-packages/_pytest/python.py:159: ResourceWarning: unclosed file <_io.TextIOWrapper name='/dev/null' mode='a' encoding='utf-8'> 314s result = testfunction(**testargs) 314s Enable tracemalloc to get traceback where the object was allocated. 314s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 314s 314s db/test_mysql.py::test_write_read_with_calculator 314s /usr/lib/python3/dist-packages/_pytest/threadexception.py:53: ResourceWarning: unclosed database in 314s def __exit__( 314s Enable tracemalloc to get traceback where the object was allocated. 314s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 314s 314s db/test_mysql.py::test_write_read_with_calculator 314s /usr/lib/python3/dist-packages/_pytest/threadexception.py:53: ResourceWarning: unclosed database in 314s def __exit__( 314s Enable tracemalloc to get traceback where the object was allocated. 314s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 314s 314s db/test_mysql.py::test_write_read_with_calculator 314s /usr/lib/python3/dist-packages/_pytest/threadexception.py:53: ResourceWarning: unclosed database in 314s def __exit__( 314s Enable tracemalloc to get traceback where the object was allocated. 314s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 314s 314s fio/test_oi.py::test_ioformat[eps] 314s /usr/lib/python3/dist-packages/fontTools/misc/textTools.py:11: ResourceWarning: unclosed database in 314s class Tag(str): 314s Enable tracemalloc to get traceback where the object was allocated. 314s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 314s 314s fio/test_oi.py::test_ioformat[eps] 314s /usr/lib/python3/dist-packages/fontTools/misc/textTools.py:11: ResourceWarning: unclosed database in 314s class Tag(str): 314s Enable tracemalloc to get traceback where the object was allocated. 314s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 314s 314s ga/test_basic_example_main_run.py::test_basic_example_main_run[0] 314s /usr/lib/python3.13/functools.py:504: ResourceWarning: unclosed file <_io.FileIO name='/dev/null' mode='wb' closefd=True> 314s def lru_cache(maxsize=128, typed=False): 314s Enable tracemalloc to get traceback where the object was allocated. 314s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 314s 314s ga/test_basic_example_main_run.py::test_basic_example_main_run[0] 314s /usr/lib/python3.13/functools.py:504: ResourceWarning: unclosed database in 314s def lru_cache(maxsize=128, typed=False): 314s Enable tracemalloc to get traceback where the object was allocated. 314s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 314s 314s ga/test_basic_example_main_run.py::test_basic_example_main_run[0] 314s /usr/lib/python3.13/functools.py:504: ResourceWarning: unclosed database in 314s def lru_cache(maxsize=128, typed=False): 314s Enable tracemalloc to get traceback where the object was allocated. 314s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 314s 314s ga/test_basic_example_main_run.py::test_basic_example_main_run[0] 314s /usr/lib/python3.13/functools.py:504: ResourceWarning: unclosed database in 314s def lru_cache(maxsize=128, typed=False): 314s Enable tracemalloc to get traceback where the object was allocated. 314s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 314s 314s ga/test_basic_example_main_run.py::test_basic_example_main_run[0] 314s /usr/lib/python3.13/functools.py:504: ResourceWarning: unclosed database in 314s def lru_cache(maxsize=128, typed=False): 314s Enable tracemalloc to get traceback where the object was allocated. 314s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 314s 314s ga/test_basic_example_main_run.py::test_basic_example_main_run[0] 314s /usr/lib/python3.13/functools.py:504: ResourceWarning: unclosed database in 314s def lru_cache(maxsize=128, typed=False): 314s Enable tracemalloc to get traceback where the object was allocated. 314s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 314s 314s ga/test_basic_example_main_run.py::test_basic_example_main_run[0] 314s /usr/lib/python3.13/functools.py:504: ResourceWarning: unclosed database in 314s def lru_cache(maxsize=128, typed=False): 314s Enable tracemalloc to get traceback where the object was allocated. 314s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 314s 314s ga/test_basic_example_main_run.py::test_basic_example_main_run[0] 314s /usr/lib/python3.13/functools.py:504: ResourceWarning: unclosed database in 314s def lru_cache(maxsize=128, typed=False): 314s Enable tracemalloc to get traceback where the object was allocated. 314s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 314s 314s geometry/test_analysis.py::test_analysis 314s /usr/lib/python3/dist-packages/scipy/sparse/_coo.py:30: ResourceWarning: unclosed database in 314s def __init__(self, arg1, shape=None, dtype=None, copy=False, *, maxprint=None): 314s Enable tracemalloc to get traceback where the object was allocated. 314s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 314s 314s gui/test_run.py::test_surface 314s /usr/lib/python3/dist-packages/_pytest/nodes.py:285: ResourceWarning: unclosed file <_io.TextIOWrapper name='/dev/null' mode='w' encoding='utf-8'> 314s def __hash__(self) -> int: 314s Enable tracemalloc to get traceback where the object was allocated. 314s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 314s 314s md/test_bussi.py::test_bussi 314s /usr/lib/python3/dist-packages/ase/test/md/test_bussi.py:15: ResourceWarning: unclosed file <_io.TextIOWrapper name='/dev/null' mode='a' encoding='utf-8'> 314s with pytest.raises(ValueError): 314s Enable tracemalloc to get traceback where the object was allocated. 314s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 314s 314s optimize/test_optimizers.py::test_run_twice[GPMin] 314s /usr/lib/python3/dist-packages/numpy/_core/fromnumeric.py:3559: ResourceWarning: unclosed file <_io.BufferedWriter name='fragile_BFGSLineSearch.traj'> 314s return asarray(a).ndim 314s Enable tracemalloc to get traceback where the object was allocated. 314s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 314s 314s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 314s ==== 2964 passed, 532 skipped, 26 xfailed, 20 warnings in 183.28s (0:03:03) ==== 314s :0: DeprecationWarning: builtin type swigvarlink has no __module__ attribute 315s autopkgtest [12:27:40]: test command1: -----------------------] 316s command1 PASS 316s autopkgtest [12:27:41]: test command1: - - - - - - - - - - results - - - - - - - - - - 316s autopkgtest [12:27:41]: @@@@@@@@@@@@@@@@@@@@ summary 316s command1 PASS