0s autopkgtest [20:16:39]: starting date and time: 2025-10-29 20:16:39+0000 0s autopkgtest [20:16:39]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [20:16:39]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.sp6uykn9/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:netcdf4-python --apt-upgrade python-ase --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=netcdf4-python/1.7.3-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-20.secgroup --name adt-resolute-arm64-python-ase-20251029-201639-juju-7f2275-prod-proposed-migration-environment-2-a9f926b8-a7f0-4311-ae35-2fa4d3472940 --image adt/ubuntu-resolute-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 4s Creating nova instance adt-resolute-arm64-python-ase-20251029-201639-juju-7f2275-prod-proposed-migration-environment-2-a9f926b8-a7f0-4311-ae35-2fa4d3472940 from image adt/ubuntu-resolute-arm64-server-20251029.img (UUID 4abae604-564c-468a-9647-ef513510018c)... 58s autopkgtest [20:17:37]: testbed dpkg architecture: arm64 59s autopkgtest [20:17:38]: testbed apt version: 3.1.11 59s autopkgtest [20:17:38]: @@@@@@@@@@@@@@@@@@@@ test bed setup 59s autopkgtest [20:17:38]: testbed release detected to be: None 60s autopkgtest [20:17:39]: updating testbed package index (apt update) 61s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [87.8 kB] 61s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 61s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 61s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 61s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [70.5 kB] 61s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [206 kB] 61s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [3669 kB] 62s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [5856 B] 62s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 Packages [276 kB] 62s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 c-n-f Metadata [5720 B] 62s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 Packages [44.3 kB] 62s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 c-n-f Metadata [324 B] 62s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 Packages [2529 kB] 63s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 c-n-f Metadata [66.4 kB] 63s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 Packages [42.0 kB] 63s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 c-n-f Metadata [1616 B] 64s Fetched 7005 kB in 2s (2914 kB/s) 65s Reading package lists... 66s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 66s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 66s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 66s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 67s Reading package lists... 67s Reading package lists... 67s Building dependency tree... 67s Reading state information... 68s Calculating upgrade... 68s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 68s autopkgtest [20:17:47]: upgrading testbed (apt dist-upgrade and autopurge) 68s Reading package lists... 69s Building dependency tree... 69s Reading state information... 69s Calculating upgrade... 69s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 69s Reading package lists... 70s Building dependency tree... 70s Reading state information... 70s Solving dependencies... 70s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 74s autopkgtest [20:17:53]: testbed running kernel: Linux 6.17.0-5-generic #5-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 22 09:50:31 UTC 2025 74s autopkgtest [20:17:53]: @@@@@@@@@@@@@@@@@@@@ apt-source python-ase 78s Get:1 http://ftpmaster.internal/ubuntu resolute/universe python-ase 3.24.0-1 (dsc) [2638 B] 78s Get:2 http://ftpmaster.internal/ubuntu resolute/universe python-ase 3.24.0-1 (tar) [2597 kB] 78s Get:3 http://ftpmaster.internal/ubuntu resolute/universe python-ase 3.24.0-1 (diff) [10.3 kB] 78s gpgv: Signature made Thu Mar 6 03:39:08 2025 UTC 78s gpgv: using RSA key 23C9A93E585819E9126D0A36573EF1E4BD5A01FA 78s gpgv: Can't check signature: No public key 78s dpkg-source: warning: cannot verify inline signature for ./python-ase_3.24.0-1.dsc: no acceptable signature found 79s autopkgtest [20:17:58]: testing package python-ase version 3.24.0-1 79s autopkgtest [20:17:58]: build not needed 80s autopkgtest [20:17:59]: test command1: preparing testbed 81s Reading package lists... 81s Building dependency tree... 81s Reading state information... 81s Solving dependencies... 82s The following NEW packages will be installed: 82s ase blt fontconfig-config fonts-dejavu-core fonts-dejavu-mono 82s fonts-font-awesome fonts-glyphicons-halflings fonts-lyx libaec0 libblas3 82s libdeflate0 libfontconfig1 libgfortran5 libgomp1 libgraphite2-3 82s libharfbuzz0b libhdf5-310 libhdf5-hl-310 libimagequant0 libjbig0 82s libjpeg-turbo8 libjpeg8 libjs-bootstrap libjs-jquery libjs-jquery-ui 82s liblapack3 liblcms2-2 liblerc4 libnetcdf22 libopenjp2-7 libqhull-r8.0 82s libraqm0 libsharpyuv0 libsymspg2 libsz2 libtcl8.6 libtiff6 libtk8.6 libwebp7 82s libwebpdemux2 libwebpmux3 libxft2 libxrender1 libxslt1.1 libxss1 libzopfli1 82s python-matplotlib-data python3-all python3-ase python3-brotli python3-cftime 82s python3-contourpy python3-cycler python3-dateutil python3-decorator 82s python3-fonttools python3-fs python3-iniconfig python3-kiwisolver 82s python3-lxml python3-lz4 python3-matplotlib python3-mpmath python3-netcdf4 82s python3-numpy python3-numpy-dev python3-packaging python3-pil 82s python3-pil.imagetk python3-platformdirs python3-pluggy python3-pycodcif 82s python3-pytest python3-pytest-mock python3-scipy python3-spglib 82s python3-sympy python3-tk python3-ufolib2 python3-zopfli python3.13-tk 82s python3.14-tk tk8.6-blt2.5 unicode-data x11-common 82s 0 upgraded, 85 newly installed, 0 to remove and 0 not upgraded. 82s Need to get 79.2 MB of archives. 82s After this operation, 358 MB of additional disk space will be used. 82s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-numpy-dev arm64 1:2.2.4+ds-1ubuntu1 [146 kB] 82s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 libblas3 arm64 3.12.1-6build1 [186 kB] 82s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 libgfortran5 arm64 15.2.0-5ubuntu1 [450 kB] 82s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 liblapack3 arm64 3.12.1-6build1 [2340 kB] 83s Get:5 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-numpy arm64 1:2.2.4+ds-1ubuntu1 [3986 kB] 84s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 84s Get:7 http://ftpmaster.internal/ubuntu resolute/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-6 [119 kB] 84s Get:8 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-bootstrap all 3.4.1+dfsg-6 [129 kB] 84s Get:9 http://ftpmaster.internal/ubuntu resolute/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 84s Get:10 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 84s Get:11 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-decorator all 5.2.1-2 [28.1 kB] 84s Get:12 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-scipy arm64 1.15.3-1ubuntu1 [18.7 MB] 86s Get:13 http://ftpmaster.internal/ubuntu resolute/universe arm64 libsymspg2 arm64 2.6.0-3build1 [209 kB] 86s Get:14 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-spglib arm64 2.6.0-3build1 [31.7 kB] 86s Get:15 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 86s Get:16 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 86s Get:17 http://ftpmaster.internal/ubuntu resolute/universe arm64 fonts-lyx all 2.4.4-1 [171 kB] 86s Get:18 http://ftpmaster.internal/ubuntu resolute/universe arm64 python-matplotlib-data all 3.10.7+dfsg1-1 [2930 kB] 86s Get:19 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-dateutil all 2.9.0-4 [80.3 kB] 86s Get:20 http://ftpmaster.internal/ubuntu resolute/main arm64 libgomp1 arm64 15.2.0-5ubuntu1 [148 kB] 86s Get:21 http://ftpmaster.internal/ubuntu resolute/main arm64 libimagequant0 arm64 2.18.0-1build1 [37.1 kB] 86s Get:22 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg-turbo8 arm64 2.1.5-4ubuntu2 [165 kB] 86s Get:23 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 86s Get:24 http://ftpmaster.internal/ubuntu resolute/main arm64 liblcms2-2 arm64 2.16-2 [170 kB] 86s Get:25 http://ftpmaster.internal/ubuntu resolute/main arm64 libopenjp2-7 arm64 2.5.3-2.1 [179 kB] 86s Get:26 http://ftpmaster.internal/ubuntu resolute/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB] 86s Get:27 http://ftpmaster.internal/ubuntu resolute/main arm64 libharfbuzz0b arm64 12.1.0-1 [523 kB] 86s Get:28 http://ftpmaster.internal/ubuntu resolute/main arm64 libraqm0 arm64 0.10.3-1 [15.0 kB] 86s Get:29 http://ftpmaster.internal/ubuntu resolute/main arm64 libdeflate0 arm64 1.23-2 [46.4 kB] 86s Get:30 http://ftpmaster.internal/ubuntu resolute/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB] 86s Get:31 http://ftpmaster.internal/ubuntu resolute/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB] 87s Get:32 http://ftpmaster.internal/ubuntu resolute/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB] 87s Get:33 http://ftpmaster.internal/ubuntu resolute/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB] 87s Get:34 http://ftpmaster.internal/ubuntu resolute/main arm64 libtiff6 arm64 4.7.0-3ubuntu3 [196 kB] 87s Get:35 http://ftpmaster.internal/ubuntu resolute/main arm64 libwebpdemux2 arm64 1.5.0-0.1 [12.5 kB] 87s Get:36 http://ftpmaster.internal/ubuntu resolute/main arm64 libwebpmux3 arm64 1.5.0-0.1 [25.4 kB] 87s Get:37 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-pil arm64 11.3.0-1ubuntu2 [492 kB] 87s Get:38 http://ftpmaster.internal/ubuntu resolute/main arm64 libtcl8.6 arm64 8.6.17+dfsg-1 [1024 kB] 87s Get:39 http://ftpmaster.internal/ubuntu resolute/main arm64 fontconfig-config arm64 2.15.0-2.3ubuntu1 [38.1 kB] 87s Get:40 http://ftpmaster.internal/ubuntu resolute/main arm64 libfontconfig1 arm64 2.15.0-2.3ubuntu1 [144 kB] 87s Get:41 http://ftpmaster.internal/ubuntu resolute/main arm64 libxrender1 arm64 1:0.9.12-1 [19.5 kB] 87s Get:42 http://ftpmaster.internal/ubuntu resolute/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB] 87s Get:43 http://ftpmaster.internal/ubuntu resolute/main arm64 x11-common all 1:7.7+24ubuntu1 [22.4 kB] 87s Get:44 http://ftpmaster.internal/ubuntu resolute/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B] 87s Get:45 http://ftpmaster.internal/ubuntu resolute/main arm64 libtk8.6 arm64 8.6.17-1 [811 kB] 87s Get:46 http://ftpmaster.internal/ubuntu resolute/main arm64 python3.14-tk arm64 3.14.0-4 [107 kB] 87s Get:47 http://ftpmaster.internal/ubuntu resolute/main arm64 python3.13-tk arm64 3.13.9-1 [106 kB] 87s Get:48 http://ftpmaster.internal/ubuntu resolute/main arm64 tk8.6-blt2.5 arm64 2.5.3+dfsg-8 [624 kB] 87s Get:49 http://ftpmaster.internal/ubuntu resolute/main arm64 blt arm64 2.5.3+dfsg-8 [4824 B] 87s Get:50 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-tk arm64 3.13.9-1 [8946 B] 87s Get:51 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pil.imagetk arm64 11.3.0-1ubuntu2 [9582 B] 87s Get:52 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-contourpy arm64 1.3.1-1build2 [253 kB] 87s Get:53 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-cycler all 0.12.1-2 [9850 B] 87s Get:54 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-brotli arm64 1.1.0-2build6 [343 kB] 87s Get:55 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-platformdirs all 4.3.7-1 [16.9 kB] 87s Get:56 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-fs all 2.4.16-7 [90.8 kB] 87s Get:57 http://ftpmaster.internal/ubuntu resolute/main arm64 libxslt1.1 arm64 1.1.43-0.3 [172 kB] 87s Get:58 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-lxml arm64 6.0.1-1build1 [2149 kB] 87s Get:59 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-lz4 arm64 4.4.4+dfsg-3 [27.6 kB] 87s Get:60 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-mpmath all 1.3.0-1 [425 kB] 87s Get:61 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-sympy all 1.13.3-5 [4229 kB] 87s Get:62 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-ufolib2 all 0.17.1+dfsg1-1 [33.5 kB] 87s Get:63 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-all arm64 3.13.7-1 [884 B] 87s Get:64 http://ftpmaster.internal/ubuntu resolute/universe arm64 libzopfli1 arm64 1.0.3-3 [108 kB] 87s Get:65 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-zopfli arm64 0.2.3.post1-1 [10.7 kB] 87s Get:66 http://ftpmaster.internal/ubuntu resolute/universe arm64 unicode-data all 16.0.0-1 [9513 kB] 87s Get:67 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-fonttools arm64 4.57.0-2build1 [1648 kB] 88s Get:68 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-kiwisolver arm64 1.4.7-3build2 [60.7 kB] 88s Get:69 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-packaging all 25.0-1 [52.8 kB] 88s Get:70 http://ftpmaster.internal/ubuntu resolute/universe arm64 libqhull-r8.0 arm64 2020.2-6build1 [189 kB] 88s Get:71 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-matplotlib arm64 3.10.7+dfsg1-1 [17.1 MB] 88s Get:72 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-ase all 3.24.0-1 [1787 kB] 88s Get:73 http://ftpmaster.internal/ubuntu resolute/universe arm64 ase all 3.24.0-1 [31.1 kB] 88s Get:74 http://ftpmaster.internal/ubuntu resolute/universe arm64 libaec0 arm64 1.1.3-1 [22.0 kB] 88s Get:75 http://ftpmaster.internal/ubuntu resolute/universe arm64 libsz2 arm64 1.1.3-1 [5254 B] 88s Get:76 http://ftpmaster.internal/ubuntu resolute/universe arm64 libhdf5-310 arm64 1.14.5+repack-3build1 [1331 kB] 88s Get:77 http://ftpmaster.internal/ubuntu resolute/universe arm64 libhdf5-hl-310 arm64 1.14.5+repack-3build1 [59.8 kB] 88s Get:78 http://ftpmaster.internal/ubuntu resolute/universe arm64 libnetcdf22 arm64 1:4.9.3-1build1 [555 kB] 88s Get:79 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-cftime arm64 1.6.4-2build1 [300 kB] 88s Get:80 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-iniconfig all 1.1.1-2 [6024 B] 88s Get:81 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 python3-netcdf4 arm64 1.7.3-1 [823 kB] 88s Get:82 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pluggy all 1.6.0-1 [21.0 kB] 88s Get:83 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pycodcif arm64 3.11.0+dfsg-1build1 [76.5 kB] 88s Get:84 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pytest all 8.3.5-2 [252 kB] 88s Get:85 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pytest-mock all 3.14.0-3 [11.8 kB] 89s Fetched 79.2 MB in 7s (11.9 MB/s) 89s Selecting previously unselected package python3-numpy-dev:arm64. 89s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83457 files and directories currently installed.) 89s Preparing to unpack .../00-python3-numpy-dev_1%3a2.2.4+ds-1ubuntu1_arm64.deb ... 89s Unpacking python3-numpy-dev:arm64 (1:2.2.4+ds-1ubuntu1) ... 89s Selecting previously unselected package libblas3:arm64. 89s Preparing to unpack .../01-libblas3_3.12.1-6build1_arm64.deb ... 89s Unpacking libblas3:arm64 (3.12.1-6build1) ... 89s Selecting previously unselected package libgfortran5:arm64. 89s Preparing to unpack .../02-libgfortran5_15.2.0-5ubuntu1_arm64.deb ... 89s Unpacking libgfortran5:arm64 (15.2.0-5ubuntu1) ... 89s Selecting previously unselected package liblapack3:arm64. 89s Preparing to unpack .../03-liblapack3_3.12.1-6build1_arm64.deb ... 89s Unpacking liblapack3:arm64 (3.12.1-6build1) ... 89s Selecting previously unselected package python3-numpy. 89s Preparing to unpack .../04-python3-numpy_1%3a2.2.4+ds-1ubuntu1_arm64.deb ... 89s Unpacking python3-numpy (1:2.2.4+ds-1ubuntu1) ... 89s Selecting previously unselected package fonts-font-awesome. 89s Preparing to unpack .../05-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 89s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 89s Selecting previously unselected package fonts-glyphicons-halflings. 89s Preparing to unpack .../06-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-6_all.deb ... 89s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-6) ... 89s Selecting previously unselected package libjs-bootstrap. 89s Preparing to unpack .../07-libjs-bootstrap_3.4.1+dfsg-6_all.deb ... 89s Unpacking libjs-bootstrap (3.4.1+dfsg-6) ... 90s Selecting previously unselected package libjs-jquery. 90s Preparing to unpack .../08-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 90s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 90s Selecting previously unselected package libjs-jquery-ui. 90s Preparing to unpack .../09-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 90s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 90s Selecting previously unselected package python3-decorator. 90s Preparing to unpack .../10-python3-decorator_5.2.1-2_all.deb ... 90s Unpacking python3-decorator (5.2.1-2) ... 90s Selecting previously unselected package python3-scipy. 90s Preparing to unpack .../11-python3-scipy_1.15.3-1ubuntu1_arm64.deb ... 90s Unpacking python3-scipy (1.15.3-1ubuntu1) ... 90s Selecting previously unselected package libsymspg2:arm64. 90s Preparing to unpack .../12-libsymspg2_2.6.0-3build1_arm64.deb ... 90s Unpacking libsymspg2:arm64 (2.6.0-3build1) ... 90s Selecting previously unselected package python3-spglib. 90s Preparing to unpack .../13-python3-spglib_2.6.0-3build1_arm64.deb ... 90s Unpacking python3-spglib (2.6.0-3build1) ... 90s Selecting previously unselected package fonts-dejavu-mono. 90s Preparing to unpack .../14-fonts-dejavu-mono_2.37-8_all.deb ... 90s Unpacking fonts-dejavu-mono (2.37-8) ... 90s Selecting previously unselected package fonts-dejavu-core. 90s Preparing to unpack .../15-fonts-dejavu-core_2.37-8_all.deb ... 90s Unpacking fonts-dejavu-core (2.37-8) ... 90s Selecting previously unselected package fonts-lyx. 90s Preparing to unpack .../16-fonts-lyx_2.4.4-1_all.deb ... 90s Unpacking fonts-lyx (2.4.4-1) ... 90s Selecting previously unselected package python-matplotlib-data. 91s Preparing to unpack .../17-python-matplotlib-data_3.10.7+dfsg1-1_all.deb ... 91s Unpacking python-matplotlib-data (3.10.7+dfsg1-1) ... 91s Selecting previously unselected package python3-dateutil. 91s Preparing to unpack .../18-python3-dateutil_2.9.0-4_all.deb ... 91s Unpacking python3-dateutil (2.9.0-4) ... 91s Selecting previously unselected package libgomp1:arm64. 91s Preparing to unpack .../19-libgomp1_15.2.0-5ubuntu1_arm64.deb ... 91s Unpacking libgomp1:arm64 (15.2.0-5ubuntu1) ... 91s Selecting previously unselected package libimagequant0:arm64. 91s Preparing to unpack .../20-libimagequant0_2.18.0-1build1_arm64.deb ... 91s Unpacking libimagequant0:arm64 (2.18.0-1build1) ... 91s Selecting previously unselected package libjpeg-turbo8:arm64. 91s Preparing to unpack .../21-libjpeg-turbo8_2.1.5-4ubuntu2_arm64.deb ... 91s Unpacking libjpeg-turbo8:arm64 (2.1.5-4ubuntu2) ... 91s Selecting previously unselected package libjpeg8:arm64. 91s Preparing to unpack .../22-libjpeg8_8c-2ubuntu11_arm64.deb ... 91s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 91s Selecting previously unselected package liblcms2-2:arm64. 91s Preparing to unpack .../23-liblcms2-2_2.16-2_arm64.deb ... 91s Unpacking liblcms2-2:arm64 (2.16-2) ... 91s Selecting previously unselected package libopenjp2-7:arm64. 91s Preparing to unpack .../24-libopenjp2-7_2.5.3-2.1_arm64.deb ... 91s Unpacking libopenjp2-7:arm64 (2.5.3-2.1) ... 91s Selecting previously unselected package libgraphite2-3:arm64. 91s Preparing to unpack .../25-libgraphite2-3_1.3.14-2ubuntu1_arm64.deb ... 91s Unpacking libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 91s Selecting previously unselected package libharfbuzz0b:arm64. 91s Preparing to unpack .../26-libharfbuzz0b_12.1.0-1_arm64.deb ... 91s Unpacking libharfbuzz0b:arm64 (12.1.0-1) ... 91s Selecting previously unselected package libraqm0:arm64. 91s Preparing to unpack .../27-libraqm0_0.10.3-1_arm64.deb ... 91s Unpacking libraqm0:arm64 (0.10.3-1) ... 91s Selecting previously unselected package libdeflate0:arm64. 91s Preparing to unpack .../28-libdeflate0_1.23-2_arm64.deb ... 91s Unpacking libdeflate0:arm64 (1.23-2) ... 91s Selecting previously unselected package libjbig0:arm64. 91s Preparing to unpack .../29-libjbig0_2.1-6.1ubuntu2_arm64.deb ... 91s Unpacking libjbig0:arm64 (2.1-6.1ubuntu2) ... 91s Selecting previously unselected package liblerc4:arm64. 91s Preparing to unpack .../30-liblerc4_4.0.0+ds-5ubuntu1_arm64.deb ... 91s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 91s Selecting previously unselected package libsharpyuv0:arm64. 91s Preparing to unpack .../31-libsharpyuv0_1.5.0-0.1_arm64.deb ... 91s Unpacking libsharpyuv0:arm64 (1.5.0-0.1) ... 91s Selecting previously unselected package libwebp7:arm64. 91s Preparing to unpack .../32-libwebp7_1.5.0-0.1_arm64.deb ... 91s Unpacking libwebp7:arm64 (1.5.0-0.1) ... 91s Selecting previously unselected package libtiff6:arm64. 91s Preparing to unpack .../33-libtiff6_4.7.0-3ubuntu3_arm64.deb ... 91s Unpacking libtiff6:arm64 (4.7.0-3ubuntu3) ... 91s Selecting previously unselected package libwebpdemux2:arm64. 91s Preparing to unpack .../34-libwebpdemux2_1.5.0-0.1_arm64.deb ... 91s Unpacking libwebpdemux2:arm64 (1.5.0-0.1) ... 91s Selecting previously unselected package libwebpmux3:arm64. 91s Preparing to unpack .../35-libwebpmux3_1.5.0-0.1_arm64.deb ... 91s Unpacking libwebpmux3:arm64 (1.5.0-0.1) ... 91s Selecting previously unselected package python3-pil:arm64. 91s Preparing to unpack .../36-python3-pil_11.3.0-1ubuntu2_arm64.deb ... 91s Unpacking python3-pil:arm64 (11.3.0-1ubuntu2) ... 91s Selecting previously unselected package libtcl8.6:arm64. 91s Preparing to unpack .../37-libtcl8.6_8.6.17+dfsg-1_arm64.deb ... 91s Unpacking libtcl8.6:arm64 (8.6.17+dfsg-1) ... 91s Selecting previously unselected package fontconfig-config. 91s Preparing to unpack .../38-fontconfig-config_2.15.0-2.3ubuntu1_arm64.deb ... 92s Unpacking fontconfig-config (2.15.0-2.3ubuntu1) ... 92s Selecting previously unselected package libfontconfig1:arm64. 92s Preparing to unpack .../39-libfontconfig1_2.15.0-2.3ubuntu1_arm64.deb ... 92s Unpacking libfontconfig1:arm64 (2.15.0-2.3ubuntu1) ... 92s Selecting previously unselected package libxrender1:arm64. 92s Preparing to unpack .../40-libxrender1_1%3a0.9.12-1_arm64.deb ... 92s Unpacking libxrender1:arm64 (1:0.9.12-1) ... 92s Selecting previously unselected package libxft2:arm64. 92s Preparing to unpack .../41-libxft2_2.3.6-1build1_arm64.deb ... 92s Unpacking libxft2:arm64 (2.3.6-1build1) ... 92s Selecting previously unselected package x11-common. 92s Preparing to unpack .../42-x11-common_1%3a7.7+24ubuntu1_all.deb ... 92s Unpacking x11-common (1:7.7+24ubuntu1) ... 92s Selecting previously unselected package libxss1:arm64. 92s Preparing to unpack .../43-libxss1_1%3a1.2.3-1build3_arm64.deb ... 92s Unpacking libxss1:arm64 (1:1.2.3-1build3) ... 92s Selecting previously unselected package libtk8.6:arm64. 92s Preparing to unpack .../44-libtk8.6_8.6.17-1_arm64.deb ... 92s Unpacking libtk8.6:arm64 (8.6.17-1) ... 92s Selecting previously unselected package python3.14-tk. 92s Preparing to unpack .../45-python3.14-tk_3.14.0-4_arm64.deb ... 92s Unpacking python3.14-tk (3.14.0-4) ... 92s Selecting previously unselected package python3.13-tk. 92s Preparing to unpack .../46-python3.13-tk_3.13.9-1_arm64.deb ... 92s Unpacking python3.13-tk (3.13.9-1) ... 92s Selecting previously unselected package tk8.6-blt2.5. 92s Preparing to unpack .../47-tk8.6-blt2.5_2.5.3+dfsg-8_arm64.deb ... 92s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-8) ... 92s Selecting previously unselected package blt. 92s Preparing to unpack .../48-blt_2.5.3+dfsg-8_arm64.deb ... 92s Unpacking blt (2.5.3+dfsg-8) ... 92s Selecting previously unselected package python3-tk:arm64. 92s Preparing to unpack .../49-python3-tk_3.13.9-1_arm64.deb ... 92s Unpacking python3-tk:arm64 (3.13.9-1) ... 92s Selecting previously unselected package python3-pil.imagetk:arm64. 92s Preparing to unpack .../50-python3-pil.imagetk_11.3.0-1ubuntu2_arm64.deb ... 92s Unpacking python3-pil.imagetk:arm64 (11.3.0-1ubuntu2) ... 92s Selecting previously unselected package python3-contourpy. 92s Preparing to unpack .../51-python3-contourpy_1.3.1-1build2_arm64.deb ... 92s Unpacking python3-contourpy (1.3.1-1build2) ... 92s Selecting previously unselected package python3-cycler. 92s Preparing to unpack .../52-python3-cycler_0.12.1-2_all.deb ... 92s Unpacking python3-cycler (0.12.1-2) ... 92s Selecting previously unselected package python3-brotli. 92s Preparing to unpack .../53-python3-brotli_1.1.0-2build6_arm64.deb ... 92s Unpacking python3-brotli (1.1.0-2build6) ... 92s Selecting previously unselected package python3-platformdirs. 92s Preparing to unpack .../54-python3-platformdirs_4.3.7-1_all.deb ... 92s Unpacking python3-platformdirs (4.3.7-1) ... 92s Selecting previously unselected package python3-fs. 92s Preparing to unpack .../55-python3-fs_2.4.16-7_all.deb ... 92s Unpacking python3-fs (2.4.16-7) ... 92s Selecting previously unselected package libxslt1.1:arm64. 92s Preparing to unpack .../56-libxslt1.1_1.1.43-0.3_arm64.deb ... 92s Unpacking libxslt1.1:arm64 (1.1.43-0.3) ... 92s Selecting previously unselected package python3-lxml:arm64. 92s Preparing to unpack .../57-python3-lxml_6.0.1-1build1_arm64.deb ... 92s Unpacking python3-lxml:arm64 (6.0.1-1build1) ... 92s Selecting previously unselected package python3-lz4. 93s Preparing to unpack .../58-python3-lz4_4.4.4+dfsg-3_arm64.deb ... 93s Unpacking python3-lz4 (4.4.4+dfsg-3) ... 93s Selecting previously unselected package python3-mpmath. 93s Preparing to unpack .../59-python3-mpmath_1.3.0-1_all.deb ... 93s Unpacking python3-mpmath (1.3.0-1) ... 93s Selecting previously unselected package python3-sympy. 93s Preparing to unpack .../60-python3-sympy_1.13.3-5_all.deb ... 93s Unpacking python3-sympy (1.13.3-5) ... 93s Selecting previously unselected package python3-ufolib2. 93s Preparing to unpack .../61-python3-ufolib2_0.17.1+dfsg1-1_all.deb ... 93s Unpacking python3-ufolib2 (0.17.1+dfsg1-1) ... 93s Selecting previously unselected package python3-all. 93s Preparing to unpack .../62-python3-all_3.13.7-1_arm64.deb ... 93s Unpacking python3-all (3.13.7-1) ... 93s Selecting previously unselected package libzopfli1. 93s Preparing to unpack .../63-libzopfli1_1.0.3-3_arm64.deb ... 93s Unpacking libzopfli1 (1.0.3-3) ... 93s Selecting previously unselected package python3-zopfli. 93s Preparing to unpack .../64-python3-zopfli_0.2.3.post1-1_arm64.deb ... 93s Unpacking python3-zopfli (0.2.3.post1-1) ... 93s Selecting previously unselected package unicode-data. 93s Preparing to unpack .../65-unicode-data_16.0.0-1_all.deb ... 93s Unpacking unicode-data (16.0.0-1) ... 93s Selecting previously unselected package python3-fonttools. 93s Preparing to unpack .../66-python3-fonttools_4.57.0-2build1_arm64.deb ... 93s Unpacking python3-fonttools (4.57.0-2build1) ... 93s Selecting previously unselected package python3-kiwisolver. 93s Preparing to unpack .../67-python3-kiwisolver_1.4.7-3build2_arm64.deb ... 93s Unpacking python3-kiwisolver (1.4.7-3build2) ... 93s Selecting previously unselected package python3-packaging. 93s Preparing to unpack .../68-python3-packaging_25.0-1_all.deb ... 93s Unpacking python3-packaging (25.0-1) ... 93s Selecting previously unselected package libqhull-r8.0:arm64. 93s Preparing to unpack .../69-libqhull-r8.0_2020.2-6build1_arm64.deb ... 93s Unpacking libqhull-r8.0:arm64 (2020.2-6build1) ... 93s Selecting previously unselected package python3-matplotlib. 93s Preparing to unpack .../70-python3-matplotlib_3.10.7+dfsg1-1_arm64.deb ... 93s Unpacking python3-matplotlib (3.10.7+dfsg1-1) ... 94s Selecting previously unselected package python3-ase. 94s Preparing to unpack .../71-python3-ase_3.24.0-1_all.deb ... 94s Unpacking python3-ase (3.24.0-1) ... 94s Selecting previously unselected package ase. 94s Preparing to unpack .../72-ase_3.24.0-1_all.deb ... 94s Unpacking ase (3.24.0-1) ... 94s Selecting previously unselected package libaec0:arm64. 94s Preparing to unpack .../73-libaec0_1.1.3-1_arm64.deb ... 94s Unpacking libaec0:arm64 (1.1.3-1) ... 94s Selecting previously unselected package libsz2:arm64. 94s Preparing to unpack .../74-libsz2_1.1.3-1_arm64.deb ... 94s Unpacking libsz2:arm64 (1.1.3-1) ... 94s Selecting previously unselected package libhdf5-310:arm64. 94s Preparing to unpack .../75-libhdf5-310_1.14.5+repack-3build1_arm64.deb ... 94s Unpacking libhdf5-310:arm64 (1.14.5+repack-3build1) ... 94s Selecting previously unselected package libhdf5-hl-310:arm64. 94s Preparing to unpack .../76-libhdf5-hl-310_1.14.5+repack-3build1_arm64.deb ... 94s Unpacking libhdf5-hl-310:arm64 (1.14.5+repack-3build1) ... 94s Selecting previously unselected package libnetcdf22:arm64. 94s Preparing to unpack .../77-libnetcdf22_1%3a4.9.3-1build1_arm64.deb ... 94s Unpacking libnetcdf22:arm64 (1:4.9.3-1build1) ... 94s Selecting previously unselected package python3-cftime. 94s Preparing to unpack .../78-python3-cftime_1.6.4-2build1_arm64.deb ... 94s Unpacking python3-cftime (1.6.4-2build1) ... 94s Selecting previously unselected package python3-iniconfig. 94s Preparing to unpack .../79-python3-iniconfig_1.1.1-2_all.deb ... 94s Unpacking python3-iniconfig (1.1.1-2) ... 94s Selecting previously unselected package python3-netcdf4. 94s Preparing to unpack .../80-python3-netcdf4_1.7.3-1_arm64.deb ... 94s Unpacking python3-netcdf4 (1.7.3-1) ... 94s Selecting previously unselected package python3-pluggy. 94s Preparing to unpack .../81-python3-pluggy_1.6.0-1_all.deb ... 94s Unpacking python3-pluggy (1.6.0-1) ... 94s Selecting previously unselected package python3-pycodcif. 94s Preparing to unpack .../82-python3-pycodcif_3.11.0+dfsg-1build1_arm64.deb ... 94s Unpacking python3-pycodcif (3.11.0+dfsg-1build1) ... 94s Selecting previously unselected package python3-pytest. 94s Preparing to unpack .../83-python3-pytest_8.3.5-2_all.deb ... 94s Unpacking python3-pytest (8.3.5-2) ... 94s Selecting previously unselected package python3-pytest-mock. 95s Preparing to unpack .../84-python3-pytest-mock_3.14.0-3_all.deb ... 95s Unpacking python3-pytest-mock (3.14.0-3) ... 95s Setting up libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 95s Setting up liblcms2-2:arm64 (2.16-2) ... 95s Setting up python3-iniconfig (1.1.1-2) ... 95s Setting up libsharpyuv0:arm64 (1.5.0-0.1) ... 95s Setting up liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 95s Setting up libxrender1:arm64 (1:0.9.12-1) ... 95s Setting up python3-lz4 (4.4.4+dfsg-3) ... 95s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-6) ... 95s Setting up fonts-lyx (2.4.4-1) ... 95s Setting up x11-common (1:7.7+24ubuntu1) ... 95s Setting up libdeflate0:arm64 (1.23-2) ... 95s Setting up libqhull-r8.0:arm64 (2020.2-6build1) ... 95s Setting up python3-all (3.13.7-1) ... 95s Setting up python3-pycodcif (3.11.0+dfsg-1build1) ... 95s Setting up libgomp1:arm64 (15.2.0-5ubuntu1) ... 95s Setting up libjbig0:arm64 (2.1-6.1ubuntu2) ... 95s Setting up libaec0:arm64 (1.1.3-1) ... 95s Setting up python3-platformdirs (4.3.7-1) ... 95s Setting up python3-fs (2.4.16-7) ... 96s Setting up unicode-data (16.0.0-1) ... 96s Setting up libsymspg2:arm64 (2.6.0-3build1) ... 96s Setting up python3-decorator (5.2.1-2) ... 96s Setting up libblas3:arm64 (3.12.1-6build1) ... 96s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 96s Setting up python3-packaging (25.0-1) ... 96s Setting up libzopfli1 (1.0.3-3) ... 96s Setting up python3-brotli (1.1.0-2build6) ... 96s Setting up python3-cycler (0.12.1-2) ... 96s Setting up libimagequant0:arm64 (2.18.0-1build1) ... 96s Setting up fonts-dejavu-mono (2.37-8) ... 96s Setting up python3-kiwisolver (1.4.7-3build2) ... 96s Setting up python3-numpy-dev:arm64 (1:2.2.4+ds-1ubuntu1) ... 96s Setting up libtcl8.6:arm64 (8.6.17+dfsg-1) ... 96s Setting up fonts-dejavu-core (2.37-8) ... 96s Setting up libjpeg-turbo8:arm64 (2.1.5-4ubuntu2) ... 96s Setting up libgfortran5:arm64 (15.2.0-5ubuntu1) ... 96s Setting up python3-pluggy (1.6.0-1) ... 96s Setting up libwebp7:arm64 (1.5.0-0.1) ... 96s Setting up libxslt1.1:arm64 (1.1.43-0.3) ... 96s Setting up libopenjp2-7:arm64 (2.5.3-2.1) ... 96s Setting up libharfbuzz0b:arm64 (12.1.0-1) ... 96s Setting up python3-dateutil (2.9.0-4) ... 97s Setting up libxss1:arm64 (1:1.2.3-1build3) ... 97s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 97s Setting up python3-mpmath (1.3.0-1) ... 97s Setting up python-matplotlib-data (3.10.7+dfsg1-1) ... 97s Setting up libwebpmux3:arm64 (1.5.0-0.1) ... 97s Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 97s Setting up libsz2:arm64 (1.1.3-1) ... 97s Setting up libjs-bootstrap (3.4.1+dfsg-6) ... 97s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 97s Setting up python3-sympy (1.13.3-5) ... 103s Setting up liblapack3:arm64 (3.12.1-6build1) ... 103s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 103s Setting up fontconfig-config (2.15.0-2.3ubuntu1) ... 104s Setting up python3-pytest (8.3.5-2) ... 104s Setting up libwebpdemux2:arm64 (1.5.0-0.1) ... 104s Setting up python3-zopfli (0.2.3.post1-1) ... 104s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 104s Setting up libraqm0:arm64 (0.10.3-1) ... 104s Setting up python3-numpy (1:2.2.4+ds-1ubuntu1) ... 106s Setting up libhdf5-310:arm64 (1.14.5+repack-3build1) ... 106s Setting up python3-pytest-mock (3.14.0-3) ... 106s Setting up python3-lxml:arm64 (6.0.1-1build1) ... 106s Setting up libtiff6:arm64 (4.7.0-3ubuntu3) ... 106s Setting up python3-contourpy (1.3.1-1build2) ... 107s Setting up libfontconfig1:arm64 (2.15.0-2.3ubuntu1) ... 107s Setting up python3-spglib (2.6.0-3build1) ... 107s Setting up libhdf5-hl-310:arm64 (1.14.5+repack-3build1) ... 107s Setting up libxft2:arm64 (2.3.6-1build1) ... 107s Setting up python3-scipy (1.15.3-1ubuntu1) ... 110s Setting up libtk8.6:arm64 (8.6.17-1) ... 110s Setting up libnetcdf22:arm64 (1:4.9.3-1build1) ... 110s Setting up python3.13-tk (3.13.9-1) ... 110s Setting up python3-pil:arm64 (11.3.0-1ubuntu2) ... 111s Setting up python3-cftime (1.6.4-2build1) ... 111s Setting up python3-netcdf4 (1.7.3-1) ... 111s Setting up tk8.6-blt2.5 (2.5.3+dfsg-8) ... 111s Setting up python3.14-tk (3.14.0-4) ... 111s Setting up blt (2.5.3+dfsg-8) ... 111s Setting up python3-tk:arm64 (3.13.9-1) ... 111s Setting up python3-pil.imagetk:arm64 (11.3.0-1ubuntu2) ... 111s Setting up python3-fonttools (4.57.0-2build1) ... 112s Setting up python3-ufolib2 (0.17.1+dfsg1-1) ... 112s Setting up python3-matplotlib (3.10.7+dfsg1-1) ... 114s Setting up python3-ase (3.24.0-1) ... 116s Setting up ase (3.24.0-1) ... 116s Processing triggers for libc-bin (2.42-0ubuntu3) ... 116s Processing triggers for man-db (2.13.1-1) ... 118s autopkgtest [20:18:37]: test command1: for py in $(py3versions -s); do cd "$AUTOPKGTEST_TMP"; $py -m ase test --pytest -p no:cacheprovider; done 118s autopkgtest [20:18:37]: test command1: [----------------------- 118s About to run pytest with these parameters: 118s -p 118s no:cacheprovider 125s ============================= test session starts ============================== 125s platform linux -- Python 3.13.9, pytest-8.3.5, pluggy-1.6.0 125s 125s Libraries 125s ========= 125s 125s ase-3.24.0 /usr/lib/python3/dist-packages/ase 125s numpy-2.2.4 /usr/lib/python3/dist-packages/numpy 125s scipy-1.15.3 /usr/lib/python3/dist-packages/scipy 125s matplotlib-3.10.7+dfsg1 /usr/lib/python3/dist-packages/matplotlib 125s spglib-2.6.0 /usr/lib/python3/dist-packages/spglib 125s ase_ext not installed 125s flask not installed 125s psycopg2 not installed 125s pyamg not installed 125s 125s 125s Calculators 125s =========== 125s Config: No configuration file specified 125s Datafiles: ase-datafiles package not installed 125s 125s [ ] abinit not installed: 'abinit' 125s [ ] ace cfg= 125s [ ] aims not installed: 'aims' 125s [ ] amber cfg= 125s [ ] asap not installed: asap3 125s [ ] castep not installed: 'castep' 125s [ ] cp2k not installed: 'cp2k' 125s [ ] crystal cfg= 125s [ ] demon cfg= 125s [ ] demonnano cfg= 125s [ ] dftb not installed: No 'dftb' section 125s [ ] dftd3 not installed: 'dftd3' 125s [ ] dmol cfg= 125s [ ] elk not installed: No 'elk' section 125s [ ] espresso not installed: 'espresso' 125s [ ] exciting not installed: 'exciting' 125s [ ] gamess_us cfg= 125s [ ] gaussian cfg= 125s [ ] gpaw not installed: gpaw 125s [ ] gromacs not installed: 'gromacs' 125s [ ] gulp cfg= 125s [ ] hotbit cfg= 125s [ ] lammpslib not installed: missing python wrappers: cannot import lammps 125s [ ] lammpsrun not installed: 'lammps' 125s [ ] mopac not installed: No 'mopac' section 125s [ ] nwchem not installed: No 'nwchem' section 125s [ ] octopus not installed: 'octopus' 125s [ ] onetep cfg= 125s [ ] openmx not installed: 'openmx' 125s [ ] orca not installed: 'orca' 125s [ ] plumed not installed: 125s [ ] psi4 not installed: psi4 125s [ ] qchem cfg= 125s [ ] siesta not installed: No 'siesta' section 125s [ ] turbomole cfg= 125s [ ] vasp not installed: 'vasp' 125s 125s * Use --calculators option to select calculators. 125s 125s * See "ase test --help-calculators" on how to configure calculators. 125s 125s * This listing only includes external calculators known by the test 125s system. Others are "configured" by setting an environment variable 125s like "ASE_xxx_COMMAND" in order to allow tests to run. Please see 125s the documentation of that individual calculator. 125s 125s 125s rootdir: /usr/lib/python3/dist-packages/ase/test 125s configfile: pytest.ini 125s plugins: typeguard-4.4.2, mock-3.14.0 125s collected 3522 items 125s 125s atoms/test_atom.py .. [ 0%] 125s atoms/test_atom_scaled_pos.py ... [ 0%] 125s atoms/test_atoms.py .............. [ 0%] 125s atoms/test_atoms_angle.py . [ 0%] 125s atoms/test_atoms_distance.py .. [ 0%] 125s atoms/test_atoms_formula.py . [ 0%] 125s atoms/test_atoms_get_duplicates.py . [ 0%] 125s atoms/test_atoms_get_positions.py ... [ 0%] 125s atoms/test_atoms_getitem.py ............. [ 1%] 125s atoms/test_atoms_indices.py . [ 1%] 125s atoms/test_atoms_info_copy.py . [ 1%] 125s atoms/test_atoms_instantiation.py .... [ 1%] 125s atoms/test_build.py . [ 1%] 125s atoms/test_center.py ........... [ 1%] 125s atoms/test_center_nonperiodic.py . [ 1%] 125s atoms/test_compare_atoms.py . [ 1%] 125s atoms/test_deprecated_get_set.py ... [ 1%] 125s atoms/test_get_angles.py . [ 1%] 125s atoms/test_h2.py . [ 1%] 125s atoms/test_mic.py . [ 1%] 125s atoms/test_momenta_velocities.py ... [ 1%] 125s atoms/test_permute_axes.py . [ 1%] 125s atoms/test_rotate.py . [ 2%] 125s atoms/test_rotate_euler.py . [ 2%] 125s atoms/test_scaled_positions.py . [ 2%] 125s atoms/test_set_get_angle.py . [ 2%] 125s bandstructure/test_bandpath.py ....... [ 2%] 125s bandstructure/test_bandstructure.py ... [ 2%] 125s bandstructure/test_bandstructure_json.py . [ 2%] 129s bandstructure/test_bandstructure_many.py ....................... [ 3%] 129s bandstructure/test_bandstructure_transform_mcl.py . [ 3%] 129s bandstructure/test_resolve_custom_kpoints.py ..... [ 3%] 129s bravais/test_2d_cell_pbc.py ..... [ 3%] 129s bravais/test_bravais_type_engine.py ................. [ 3%] 129s bravais/test_eps.py .. [ 3%] 129s bravais/test_hex.py . [ 3%] 130s bravais/test_lattices.py ............................................... [ 5%] 130s .. [ 5%] 130s bravais/test_line_lattice.py . [ 5%] 130s bravais/test_main.py ......................... [ 6%] 130s bravais/test_orcc_mcl.py . [ 6%] 130s bravais/test_reduce.py . [ 6%] 130s bravais/test_standard_form.py ....................... [ 6%] 130s build_/test_attach.py .... [ 6%] 130s build_/test_build_bulk.py .............................................. [ 8%] 131s ........................................................................ [ 10%] 131s ........................................................................ [ 12%] 131s .................................................. [ 13%] 131s build_/test_bulk.py .......... [ 13%] 131s build_/test_connected.py .... [ 14%] 131s build_/test_minimize_rotation_and_translation.py .. [ 14%] 132s build_/test_supercells.py .............................................. [ 15%] 134s .............. [ 15%] 134s build_/test_surface.py ... [ 15%] 134s build_/test_surface_stack.py . [ 15%] 134s build_/test_surface_terminations.py . [ 16%] 134s calculator/abinit/test_abinit_cmdline.py s [ 16%] 134s calculator/abinit/test_main.py sssssssss [ 16%] 134s calculator/ace/test_ace.py s [ 16%] 134s calculator/ace/test_ace_calculator.py . [ 16%] 134s calculator/aims/test_H2O_aims.py s [ 16%] 134s calculator/aims/test_aims_interface.py s [ 16%] 134s calculator/aims/test_version.py . [ 16%] 134s calculator/amber/test_amber.py s [ 16%] 134s calculator/castep/test_castep_interface.py ........ [ 16%] 135s calculator/cp2k/test_cp2k_H2_None.py s [ 16%] 135s calculator/cp2k/test_cp2k_dcd.py s [ 16%] 135s calculator/cp2k/test_cp2k_many.py ssssssssssss [ 17%] 135s calculator/cp2k/test_cp2k_restart.py . [ 17%] 135s calculator/cp2k/test_cp2k_stress.py s [ 17%] 135s calculator/crystal/test_bulk.py s [ 17%] 135s calculator/crystal/test_graphene.py s [ 17%] 135s calculator/crystal/test_molecule.py s [ 17%] 135s calculator/demon/test_h2o.py s [ 17%] 135s calculator/demon/test_h2o_xas_xes.py s [ 17%] 135s calculator/demonnano/test_h2o.py s [ 17%] 135s calculator/dftb/test_dftb_bandstructure.py s [ 17%] 135s calculator/dftb/test_dftb_relax_bulk.py .s [ 17%] 135s calculator/dftb/test_dftb_relax_dimer.py s [ 17%] 135s calculator/dftb/test_dftb_relax_surface.py s [ 17%] 135s calculator/dftb/test_dipole.py s [ 17%] 135s calculator/dftb/test_xtb_static.py s [ 17%] 135s calculator/dmol/test_Al_dmol.py s [ 17%] 135s calculator/dmol/test_water_dmol.py s [ 17%] 135s calculator/elk/test_elk.py ss [ 17%] 135s calculator/espresso/test_espresso.py ..ssss.. [ 17%] 135s calculator/exciting/test_exciting.py sssss [ 18%] 135s calculator/exciting/test_runner.py ssss. [ 18%] 135s calculator/gamess_us/test_basis_ecp.py s [ 18%] 135s calculator/gamess_us/test_gamess_us.py sssss [ 18%] 135s calculator/gaussian/test_h2of.py s [ 18%] 135s calculator/gaussian/test_optimizer_irc.py ss [ 18%] 135s calculator/gaussian/test_water.py s [ 18%] 135s calculator/gpaw_/test_no_spin_and_spin.py s [ 18%] 135s calculator/gpaw_/test_read_text_output.py . [ 18%] 137s calculator/gpaw_/test_wannier.py ...........................ssssssssssss [ 19%] 137s ssssssssssssssssssssssssssssssssssssssssssssssssssssssss....sss [ 21%] 137s calculator/gromacs/test_gromacs.py .ss [ 21%] 137s calculator/kim/test_cutoff_skin.py s [ 21%] 137s calculator/kim/test_energy_forces_stress.py s [ 21%] 137s calculator/kim/test_modify_parameters.py s [ 21%] 137s calculator/kim/test_multi_neighlist.py s [ 21%] 137s calculator/kim/test_relax.py s [ 21%] 137s calculator/kim/test_single_atom.py s [ 21%] 137s calculator/kim/test_update_coords.py s [ 21%] 137s calculator/kim/test_update_neighbor_parameters.py s [ 21%] 137s calculator/lammps/test_prism.py ........................................ [ 22%] 137s . [ 22%] 137s calculator/lammpslib/test_Pt_stress_cellopt.py s [ 22%] 137s calculator/lammpslib/test_lammpslib_change_cell_bcs.py s [ 22%] 137s calculator/lammpslib/test_lammpslib_neighlist_bug.py s [ 22%] 137s calculator/lammpslib/test_lammpslib_post_changebox_cmds.py s [ 22%] 137s calculator/lammpslib/test_lammpslib_simple.py sssss [ 23%] 137s calculator/lammpslib/test_lammpslib_small_nonperiodic.py s [ 23%] 137s calculator/lammpsrun/test_Ar_minimize.py ss [ 23%] 137s calculator/lammpsrun/test_NaCl_minimize.py s [ 23%] 137s calculator/lammpsrun/test_Pt_md_constraints_multistep.py s [ 23%] 137s calculator/lammpsrun/test_Pt_stress_cellopt.py s [ 23%] 137s calculator/lammpsrun/test_lammps_units.py s [ 23%] 137s calculator/lammpsrun/test_no_data_file_wrap.py s [ 23%] 137s calculator/nwchem/test_nwchem_bands.py s [ 23%] 137s calculator/nwchem/test_nwchem_broken_symmetry.py s [ 23%] 137s calculator/nwchem/test_nwchem_cmdline.py s [ 23%] 137s calculator/nwchem/test_nwchem_eigenvalues.py ss [ 23%] 137s calculator/nwchem/test_nwchem_h3o2m.py s [ 23%] 137s calculator/nwchem/test_nwchem_multitask.py sss [ 23%] 137s calculator/nwchem/test_nwchem_parser.py . [ 23%] 137s calculator/nwchem/test_nwchem_runmany.py ssssssssssssss [ 24%] 137s calculator/nwchem/test_nwchem_spin_symmetry.py s [ 24%] 137s calculator/nwchem/test_nwchem_stress.py s [ 24%] 137s calculator/nwchem/test_nwchem_version.py s [ 24%] 137s calculator/octopus/test_big.py ss [ 24%] 137s calculator/onetep/test_onetep.py s [ 24%] 137s calculator/openmx/test_md.py s [ 24%] 137s calculator/openmx/test_version.py . [ 24%] 137s calculator/plumed/test_plumed.py ssssss [ 24%] 137s calculator/psi4/test_psi4_HF_3_21G.py s [ 24%] 137s calculator/qchem/test_qchem_calculator.py s [ 24%] 137s calculator/siesta/lrtddft/test_siesta_lrtddft.py s [ 24%] 137s calculator/siesta/lrtddft/test_siesta_raman.py s [ 24%] 137s calculator/siesta/test_bandstructure.py s [ 24%] 137s calculator/siesta/test_dos.py s [ 24%] 137s calculator/siesta/test_fdf_io.py s [ 24%] 137s calculator/siesta/test_siesta_read_eigenvalues.py .s [ 24%] 137s calculator/siesta/test_siesta_version.py . [ 24%] 137s calculator/siesta/test_siesta_zmat.py sss [ 24%] 137s calculator/siesta/test_write_input.py sssss [ 24%] 137s calculator/socketio/test_h2_stiffness.py sssss [ 25%] 137s calculator/socketio/test_integration.py ss [ 25%] 137s calculator/socketio/test_ipi_protocol_bfgs.py ss [ 25%] 139s calculator/socketio/test_python_interface.py . [ 25%] 139s calculator/socketio/test_socket_io_mpi_line.py . [ 25%] 139s calculator/test_al.py s [ 25%] 139s calculator/test_bond_polarizability.py ... [ 25%] 139s calculator/test_calculator.py .. [ 25%] 139s calculator/test_ch4_energy.py sssssssssss [ 25%] 139s calculator/test_command.py ............................................. [ 27%] 139s .................. [ 27%] 139s calculator/test_dftd3.py sssssssssssssss [ 27%] 139s calculator/test_eam.py . [ 27%] 139s calculator/test_eam_run.py sssssssss [ 28%] 139s calculator/test_fd.py . [ 28%] 139s calculator/test_gulp.py s [ 28%] 139s calculator/test_gulp_opt.py s [ 28%] 139s calculator/test_h2.py sss [ 28%] 139s calculator/test_h2_bond_force.py sssssss [ 28%] 139s calculator/test_h2morse.py ..... [ 28%] 140s calculator/test_harmonic.py ...... [ 28%] 140s calculator/test_lj.py ....... [ 29%] 140s calculator/test_mopac.py ss [ 29%] 140s calculator/test_mopac_version.py ... [ 29%] 141s calculator/test_morse.py .... [ 29%] 141s calculator/test_orca.py .sssssss [ 29%] 141s calculator/test_orca_qmmm.py s [ 29%] 141s calculator/test_polarizability.py . [ 29%] 141s calculator/test_si_stress.py sssss [ 29%] 143s calculator/test_subprocess_calculator.py ..s. [ 29%] 144s calculator/test_traj.py sssss.sss [ 30%] 144s calculator/test_ts09.py .. [ 30%] 144s calculator/turbomole/test_turbomole_2h2o.py s [ 30%] 144s calculator/turbomole/test_turbomole_H2.py ss [ 30%] 144s calculator/turbomole/test_turbomole_au13.py s [ 30%] 144s calculator/turbomole/test_turbomole_calculator.py .... [ 30%] 144s calculator/turbomole/test_turbomole_h2o.py ss [ 30%] 144s calculator/turbomole/test_turbomole_h3o2m.py s [ 30%] 144s calculator/turbomole/test_turbomole_optimizer.py ss [ 30%] 144s calculator/turbomole/test_turbomole_parameters.py ............. [ 30%] 144s calculator/turbomole/test_turbomole_qmmm.py s [ 30%] 144s calculator/turbomole/test_turbomole_reader.py . [ 31%] 144s calculator/turbomole/test_turbomole_statpt.py s [ 31%] 144s calculator/vasp/test_chgcar.py . [ 31%] 144s calculator/vasp/test_vasp_Al_volrelax.py s [ 31%] 144s calculator/vasp/test_vasp_calculator.py ..................... [ 31%] 144s calculator/vasp/test_vasp_charge.py ssssss [ 31%] 144s calculator/vasp/test_vasp_check_state.py s [ 31%] 144s calculator/vasp/test_vasp_co.py s [ 31%] 144s calculator/vasp/test_vasp_converge.py . [ 31%] 144s calculator/vasp/test_vasp_errors.py . [ 31%] 144s calculator/vasp/test_vasp_freq.py s [ 31%] 144s calculator/vasp/test_vasp_get_dos.py s [ 32%] 144s calculator/vasp/test_vasp_incar.py .......... [ 32%] 144s calculator/vasp/test_vasp_input.py ...................... [ 32%] 144s calculator/vasp/test_vasp_kpoints.py ....ss... [ 33%] 144s calculator/vasp/test_vasp_potcar.py ss [ 33%] 144s calculator/vasp/test_vasp_setup.py sssssss [ 33%] 144s calculator/vasp/test_vasp_wdir.py s [ 33%] 144s calculator/vasp/test_vasp_xml.py s [ 33%] 144s calculator/vasp/test_version.py . [ 33%] 144s cell/test_cell.py ........... [ 33%] 144s cell/test_cell_completion.py . [ 33%] 144s cell/test_cell_conv.py . [ 33%] 144s cell/test_cell_uncompletion.py .. [ 33%] 144s cell/test_conventional_map.py ....................... [ 34%] 144s cell/test_minkowski_reduce.py ....................... [ 35%] 145s cell/test_niggli.py .................... [ 35%] 145s cell/test_niggli_ndim.py ............................ [ 36%] 145s cell/test_niggli_op.py . [ 36%] 145s cell/test_standard_form.py . [ 36%] 145s cell/test_supercell.py .... [ 36%] 146s cli/test_ag.py . [ 36%] 147s cli/test_bandstructure.py . [ 36%] 150s cli/test_bzplot.py ... [ 36%] 150s cli/test_complete.py . [ 36%] 150s cli/test_convert.py . [ 36%] 155s cli/test_diff.py ......... [ 37%] 157s cli/test_dimensionality.py .... [ 37%] 160s cli/test_exec.py ..... [ 37%] 160s cli/test_imports.py . [ 37%] 163s cli/test_info.py ..... [ 37%] 163s cli/test_run.py . [ 37%] 164s constraints/test_CO2linear_Au111.py .. [ 37%] 164s constraints/test_external_force.py . [ 37%] 164s constraints/test_fix_bond_length_mic.py .. [ 37%] 169s constraints/test_fix_symmetry.py ........... [ 38%] 169s constraints/test_fixatoms.py . [ 38%] 172s constraints/test_fixbondlength_CO2_Au111.py .. [ 38%] 172s constraints/test_fixbonds.py . [ 38%] 172s constraints/test_fixcartesian.py .. [ 38%] 172s constraints/test_fixcom.py ... [ 38%] 172s constraints/test_fixedline_fixedplane.py ............................... [ 39%] 172s ............. [ 39%] 172s constraints/test_fixedmode.py . [ 39%] 173s constraints/test_fixinternals.py ....... [ 39%] 173s constraints/test_fixscaled.py .. [ 39%] 173s constraints/test_fixsubsetcom.py ... [ 40%] 173s constraints/test_getindices.py . [ 40%] 174s constraints/test_hookean.py . [ 40%] 174s constraints/test_hookean_pbc.py . [ 40%] 174s constraints/test_mirror.py . [ 40%] 174s constraints/test_negativeindex.py . [ 40%] 174s constraints/test_parameteric_constr.py . [ 40%] 174s constraints/test_repeat_FixAtoms.py . [ 40%] 174s constraints/test_setpos.py . [ 40%] 178s db/test_cli.py ...... [ 40%] 190s db/test_db.py ..sss [ 40%] 191s db/test_db2.py ..xxx. [ 40%] 191s db/test_db_web.py ssss. [ 40%] 191s db/test_jsondb.py . [ 40%] 191s db/test_metadata.py .. [ 40%] 191s db/test_mysql.py ssssss [ 41%] 191s db/test_o2b2o.py . [ 41%] 191s db/test_row.py . [ 41%] 191s db/test_sql_db_ext_tables.py .xxx.xxx.xxx.xxx.xxx.xxx [ 41%] 193s db/test_sqlite.py .... [ 41%] 193s db/test_table.py . [ 42%] 193s db/test_update.py .. [ 42%] 193s dft/test_bandgap.py . [ 42%] 193s dft/test_bee.py ... [ 42%] 193s dft/test_bz.py . [ 42%] 193s dft/test_dos.py . [ 42%] 193s dft/test_hex.py . [ 42%] 193s dft/test_interpolate.py . [ 42%] 193s dft/test_kpt_density_monkhorst_pack.py . [ 42%] 193s dft/test_kpts_size_offsets.py ........ [ 42%] 195s dft/test_min_distance_monkhorst_pack.py ... [ 42%] 195s dft/test_monoclinic.py . [ 42%] 195s emt/test_emt.py . [ 42%] 195s emt/test_emt1.py . [ 42%] 195s emt/test_emt2.py . [ 42%] 195s emt/test_emt_h3o2m.py . [ 42%] 196s emt/test_emt_stress.py . [ 42%] 196s filter/test_cellfilter.py sssssssssssssssssss [ 43%] 196s filter/test_filter.py . [ 43%] 196s filter/test_strain.py ss [ 43%] 196s filter/test_strain_emt.py . [ 43%] 196s fio/aims/test_aims_out.py ......... [ 43%] 196s fio/aims/test_aims_out_chunks.py ....................................... [ 44%] 196s ............................................................... [ 46%] 196s fio/aims/test_geometry.py ........... [ 46%] 196s fio/aims/test_write_control.py ...x.......x [ 47%] 196s fio/castep/test_castep_reader.py ............... [ 47%] 196s fio/castep/test_read_bands.py . [ 47%] 196s fio/exciting/test_exciting.py ssssss [ 47%] 196s fio/octopus/test_input.py .... [ 48%] 196s fio/octopus/test_output.py ...... [ 48%] 196s fio/test_abinit.py ..... [ 48%] 196s fio/test_ace.py .. [ 48%] 196s fio/test_amber.py ... [ 48%] 197s fio/test_animate.py . [ 48%] 197s fio/test_atoms_bytes.py . [ 48%] 197s fio/test_bundletrajectory.py ...... [ 48%] 197s fio/test_castep.py ........... [ 49%] 197s fio/test_cfg.py . [ 49%] 197s fio/test_cif.py ..................... [ 49%] 197s fio/test_cifblock.py ........ [ 49%] 197s fio/test_cjson.py .. [ 49%] 197s fio/test_compression.py ...................... [ 50%] 197s fio/test_cube.py .... [ 50%] 197s fio/test_dftb.py ..... [ 50%] 197s fio/test_dlp.py ... [ 50%] 197s fio/test_dmol.py . [ 50%] 197s fio/test_elk.py ... [ 50%] 197s fio/test_eon_multi_image_read.py . [ 51%] 197s fio/test_eon_readwrite.py ...... [ 51%] 197s fio/test_espresso.py ................. [ 51%] 197s fio/test_espresso_ph.py ..... [ 51%] 197s fio/test_external_io_formats.py .... [ 51%] 198s fio/test_extxyz.py ................................. [ 52%] 198s fio/test_fileobj.py . [ 52%] 198s fio/test_formats.py ... [ 52%] 198s fio/test_gaussian.py .......... [ 53%] 198s fio/test_gaussian_gjf_input.py ........... [ 53%] 198s fio/test_gaussian_out.py .......... [ 53%] 198s fio/test_gen.py ......................... [ 54%] 198s fio/test_gpaw.py . [ 54%] 198s fio/test_gpumd.py .......... [ 54%] 198s fio/test_info.py . [ 54%] 198s fio/test_ioformats.py .sssssssssssssssssssssssssssssssssssssssssssssssss [ 56%] 198s sssssssssssssssssssssssssssssssssssssssssssssssss [ 57%] 198s fio/test_iread_path.py . [ 57%] 198s fio/test_json_arrays.py . [ 57%] 198s fio/test_jsonio.py .. [ 57%] 198s fio/test_jsonio_atoms.py ... [ 57%] 198s fio/test_lammpsdump.py .................. [ 58%] 198s fio/test_magmom.py . [ 58%] 198s fio/test_magres.py .. [ 58%] 198s fio/test_match_magic.py . [ 58%] 198s fio/test_mustem.py .. [ 58%] 198s fio/test_netcdftrajectory.py .... [ 58%] 198s fio/test_nomad.py . [ 58%] 199s fio/test_nwchem.py ..... [ 58%] 199s fio/test_oi.py ......................................................... [ 60%] 199s ......................... [ 61%] 199s fio/test_oldtraj.py . [ 61%] 199s fio/test_onetep.py .... [ 61%] 199s fio/test_openmx.py .. [ 61%] 199s fio/test_opls.py . [ 61%] 199s fio/test_orca.py ..... [ 61%] 199s fio/test_parallel.py . [ 61%] 200s fio/test_pdb_cell_io.py .... [ 61%] 200s fio/test_pdb_extra.py .. [ 61%] 201s fio/test_pickle_bundle_trajectory.py ..x.x.. [ 61%] 201s fio/test_povray.py ss.ss [ 62%] 201s fio/test_prismatic.py .. [ 62%] 201s fio/test_proteindatabank.py .......... [ 62%] 201s fio/test_py.py . [ 62%] 201s fio/test_pycodcif_read.py . [ 62%] 201s fio/test_qbox.py .. [ 62%] 201s fio/test_readwrite_errors.py ........ [ 62%] 201s fio/test_res.py . [ 62%] 201s fio/test_rmc6f.py ............ [ 63%] 201s fio/test_sdf.py .. [ 63%] 201s fio/test_siesta.py ... [ 63%] 201s fio/test_traj_bytesio.py . [ 63%] 201s fio/test_trajectory.py .... [ 63%] 201s fio/test_trajectory_heterogeneous.py . [ 63%] 201s fio/test_turbomole.py . [ 63%] 201s fio/test_ulm.py .... [ 63%] 201s fio/test_ulm_dummy.py . [ 63%] 201s fio/test_v_sim.py . [ 63%] 201s fio/test_vasp_structure.py ........ [ 63%] 201s fio/test_wout.py .. [ 63%] 201s fio/test_xsd_bond.py . [ 63%] 201s fio/test_xsf_spec.py . [ 64%] 201s fio/test_xyz.py ...... [ 64%] 201s fio/vasp/test_incar_writer.py ............. [ 64%] 201s fio/vasp/test_poscar.py . [ 64%] 201s fio/vasp/test_read_vasp_xml.py ....... [ 64%] 201s fio/vasp/test_vasp_out.py ....... [ 64%] 202s fio/vasp/test_vasp_outcar_parsers.py ............................ [ 65%] 202s fio/vasp/test_vasp_poscar.py ............ [ 66%] 202s forcefields/test_acn.py . [ 66%] 202s forcefields/test_aic.py . [ 66%] 202s forcefields/test_combine_mm.py . [ 66%] 206s forcefields/test_combine_mm2.py . [ 66%] 208s forcefields/test_counterions.py . [ 66%] 209s forcefields/test_forceqmmm.py .............. [ 66%] 210s forcefields/test_qmmm.py . [ 66%] 210s forcefields/test_qmmm_acn.py . [ 66%] 212s forcefields/test_rattle.py . [ 66%] 212s forcefields/test_rattle_linear.py . [ 66%] 212s forcefields/test_tip4p.py . [ 66%] 212s forcefields/test_tipnp.py . [ 66%] 212s forcefields/test_utils_ff_vdw.py . [ 66%] 212s ga/test_add_candidates.py . [ 66%] 214s ga/test_basic_example_main_run.py . [ 66%] 217s ga/test_bulk_operators.py . [ 66%] 217s ga/test_chain_operators.py . [ 66%] 217s ga/test_create_database.py . [ 67%] 217s ga/test_cutandsplicepairing.py . [ 67%] 218s ga/test_database_logic.py . [ 67%] 218s ga/test_element_operators.py . [ 67%] 219s ga/test_film_operators.py . [ 67%] 219s ga/test_mutations.py . [ 67%] 219s ga/test_particle_comparators.py . [ 67%] 219s ga/test_particle_mutations.py . [ 67%] 219s ga/test_particle_operators.py . [ 67%] 219s ga/test_slab_operators.py ..... [ 67%] 219s ga/test_standardcomparator.py . [ 67%] 219s geometry/test_analysis.py ... [ 67%] 219s geometry/test_dimensionality.py ......... [ 67%] 220s geometry/test_distance.py . [ 67%] 220s geometry/test_geometry.py . [ 67%] 220s geometry/test_geometry_derivatives.py .... [ 67%] 220s geometry/test_geometry_rdf.py .... [ 68%] 220s gui/test_run.py ssssssssssssssssssssssssssssssssssssssss [ 69%] 220s lammpsdata/test_lammpsdata_read.py . [ 69%] 220s lammpsdata/test_lammpsdata_write.py . [ 69%] 220s lammpsdata/test_read_connectivity.py ...... [ 69%] 221s lammpsdata/test_write_and_read.py .............................. [ 70%] 221s md/test_CO2linear_Au111_langevin.py . [ 70%] 222s md/test_bussi.py .... [ 70%] 223s md/test_ce_curvature.py .. [ 70%] 223s md/test_ce_logging.py . [ 70%] 224s md/test_ce_potentiostat.py .. [ 70%] 224s md/test_fixrotation.py s [ 70%] 224s md/test_idealgas.py . [ 70%] 224s md/test_langevin_asapcompat.py . [ 70%] 224s md/test_langevin_com.py . [ 70%] 227s md/test_langevin_switching.py . [ 70%] 229s md/test_maxwellboltzmann.py .. [ 70%] 229s md/test_md.py .. [ 70%] 230s md/test_md_logger.py .... [ 70%] 230s md/test_md_logger_interval.py ...... [ 71%] 231s md/test_nose_hoover_chain.py ..ss [ 71%] 231s md/test_nvt_npt.py sss [ 71%] 231s md/test_phonon_md_init.py s [ 71%] 231s md/test_rng.py .. [ 71%] 231s md/test_velocity_distribution.py ... [ 71%] 231s md/test_verlet_thermostats_asap.py s [ 71%] 231s neb/test_COCu111.py . [ 71%] 232s neb/test_COCu111_2.py . [ 71%] 232s neb/test_autoneb.py s. [ 71%] 241s neb/test_dynamic_neb.py . [ 71%] 241s neb/test_idpp.py . [ 71%] 241s neb/test_interpolate_images.py ..... [ 71%] 243s neb/test_neb_tr.py . [ 71%] 252s neb/test_precon_neb.py ............ [ 72%] 252s neb/test_shared_calculator_neb.py ....... [ 72%] 253s neighbor/test_neighbor.py ................................ [ 73%] 253s neighbor/test_neighbor_initialization.py . [ 73%] 256s neighbor/test_neighbor_kernel.py . [ 73%] 256s optimize/test_bad_restart.py . [ 73%] 257s optimize/test_cellawarebfgs.py ...... [ 73%] 258s optimize/test_climb_fix_internals.py ... [ 73%] 258s optimize/test_fire.py . [ 73%] 258s optimize/test_fire2.py . 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[ 79%] 282s spectrum/test_doscollection.py ......................................... [ 80%] 282s .. [ 80%] 282s spectrum/test_dosdata.py ............................................... [ 81%] 282s ..... [ 81%] 282s standardization/test_properties.py . [ 81%] 282s test_bader.py . [ 81%] 282s test_bandpath_kpts_axis.py . [ 81%] 284s test_basin.py . [ 81%] 284s test_calc_outputs_big.py ... [ 82%] 284s test_calc_properties.py .......................................... [ 83%] 285s test_calculator_equal.py ............................................... [ 84%] 285s ........................................................................ [ 86%] 285s ........................................................................ [ 88%] 285s ............................................. [ 89%] 285s test_calculator_label.py . [ 90%] 285s test_checkpoint.py .. [ 90%] 286s test_cluster.py ........................ [ 90%] 286s test_cutoffs.py . [ 90%] 286s test_dependency_list.py .. 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[ 94%] 291s test_mixingcalc.py . [ 94%] 291s test_mpi.py .s [ 94%] 292s test_noncollinear.py . [ 94%] 292s test_nwchem_writer.py ... [ 94%] 292s test_parsemath.py . [ 94%] 292s test_pathlib_support.py . [ 94%] 292s test_phasediagram.py ... [ 95%] 293s test_phonons.py ....... [ 95%] 293s test_potential_energies.py . [ 95%] 293s test_pourbaix.py ...... [ 95%] 293s test_properties.py . [ 95%] 293s test_ptable.py . [ 95%] 293s test_pubchem.py . [ 95%] 293s test_quaternions.py ......... [ 95%] 293s test_root_surf.py . [ 95%] 293s test_s22.py . [ 95%] 293s test_singlepoint_dft_calc.py . [ 95%] 293s test_singlepointcalc.py . [ 95%] 293s test_springcalc.py . [ 95%] 293s test_stm.py . [ 95%] 294s test_stress.py .. [ 95%] 296s test_structure_comparator.py .................... [ 96%] 296s test_symbols.py ........... [ 96%] 297s test_thermochemistry.py .........s..... [ 97%] 297s test_things.py . [ 97%] 297s test_timing.py . [ 97%] 297s test_units.py .. [ 97%] 297s test_util.py ......................... [ 98%] 297s test_versionnumber.py . [ 98%] 297s test_x3d.py s [ 98%] 297s test_xrdebye.py ... [ 98%] 297s test_xwopen.py ... [ 98%] 297s test_zmatrix.py .... [ 98%] 299s transport/test_transport_calculator.py . [ 98%] 299s vibrations/test_albrecht.py .... [ 98%] 299s vibrations/test_bond_polarizability_raman.py ... [ 98%] 299s vibrations/test_combine.py . [ 98%] 300s vibrations/test_folding.py . [ 98%] 300s vibrations/test_franck_condon.py ... [ 98%] 300s vibrations/test_pickle2json.py . [ 98%] 300s vibrations/test_placzek.py .... [ 98%] 300s vibrations/test_profeta_albrecht.py . [ 98%] 300s vibrations/test_vib.py ................................... [ 99%] 300s vibrations/test_vibrations_example.py . [100%] 300s 300s =============================== warnings summary =============================== 300s :488 300s :488: RuntimeWarning: numpy.ndarray size changed, may indicate binary incompatibility. Expected 16 from C header, got 96 from PyObject 300s 300s calculator/turbomole/test_turbomole_calculator.py::test_turbomole_default 300s /usr/lib/python3/dist-packages/ase/calculators/turbomole/parameters.py:449: ResourceWarning: unclosed file <_io.FileIO name='/dev/null' mode='wb' closefd=True> 300s if k in list(self.parameter_spec[p].keys()): 300s Enable tracemalloc to get traceback where the object was allocated. 300s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 300s 300s constraints/test_fix_symmetry.py::test_fail_md 300s /usr/lib/python3/dist-packages/_pytest/python.py:159: ResourceWarning: unclosed file <_io.TextIOWrapper name='/dev/null' mode='a' encoding='utf-8'> 300s result = testfunction(**testargs) 300s Enable tracemalloc to get traceback where the object was allocated. 300s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 300s 300s db/test_mysql.py::test_write_read_with_calculator 300s /usr/lib/python3/dist-packages/_pytest/nodes.py:285: ResourceWarning: unclosed database in 300s def __hash__(self) -> int: 300s Enable tracemalloc to get traceback where the object was allocated. 300s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 300s 300s db/test_mysql.py::test_write_read_with_calculator 300s /usr/lib/python3/dist-packages/_pytest/nodes.py:285: ResourceWarning: unclosed database in 300s def __hash__(self) -> int: 300s Enable tracemalloc to get traceback where the object was allocated. 300s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 300s 300s db/test_mysql.py::test_write_read_with_calculator 300s /usr/lib/python3/dist-packages/_pytest/nodes.py:285: ResourceWarning: unclosed database in 300s def __hash__(self) -> int: 300s Enable tracemalloc to get traceback where the object was allocated. 300s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 300s 300s fio/test_oi.py::test_ioformat[eps] 300s /usr/lib/python3/dist-packages/fontTools/misc/textTools.py:11: ResourceWarning: unclosed database in 300s class Tag(str): 300s Enable tracemalloc to get traceback where the object was allocated. 300s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 300s 300s fio/test_oi.py::test_ioformat[eps] 300s /usr/lib/python3/dist-packages/fontTools/misc/textTools.py:11: ResourceWarning: unclosed database in 300s class Tag(str): 300s Enable tracemalloc to get traceback where the object was allocated. 300s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 300s 300s ga/test_basic_example_main_run.py::test_basic_example_main_run[0] 300s /usr/lib/python3.13/functools.py:504: ResourceWarning: unclosed file <_io.FileIO name='/dev/null' mode='wb' closefd=True> 300s def lru_cache(maxsize=128, typed=False): 300s Enable tracemalloc to get traceback where the object was allocated. 300s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 300s 300s ga/test_basic_example_main_run.py::test_basic_example_main_run[0] 300s /usr/lib/python3.13/functools.py:504: ResourceWarning: unclosed database in 300s def lru_cache(maxsize=128, typed=False): 300s Enable tracemalloc to get traceback where the object was allocated. 300s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 300s 300s ga/test_basic_example_main_run.py::test_basic_example_main_run[0] 300s /usr/lib/python3.13/functools.py:504: ResourceWarning: unclosed database in 300s def lru_cache(maxsize=128, typed=False): 300s Enable tracemalloc to get traceback where the object was allocated. 300s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 300s 300s ga/test_basic_example_main_run.py::test_basic_example_main_run[0] 300s /usr/lib/python3.13/functools.py:504: ResourceWarning: unclosed database in 300s def lru_cache(maxsize=128, typed=False): 300s Enable tracemalloc to get traceback where the object was allocated. 300s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 300s 300s ga/test_basic_example_main_run.py::test_basic_example_main_run[0] 300s /usr/lib/python3.13/functools.py:504: ResourceWarning: unclosed database in 300s def lru_cache(maxsize=128, typed=False): 300s Enable tracemalloc to get traceback where the object was allocated. 300s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 300s 300s ga/test_basic_example_main_run.py::test_basic_example_main_run[0] 300s /usr/lib/python3.13/functools.py:504: ResourceWarning: unclosed database in 300s def lru_cache(maxsize=128, typed=False): 300s Enable tracemalloc to get traceback where the object was allocated. 300s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 300s 300s ga/test_basic_example_main_run.py::test_basic_example_main_run[0] 300s /usr/lib/python3.13/functools.py:504: ResourceWarning: unclosed database in 300s def lru_cache(maxsize=128, typed=False): 300s Enable tracemalloc to get traceback where the object was allocated. 300s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 300s 300s ga/test_basic_example_main_run.py::test_basic_example_main_run[0] 300s /usr/lib/python3.13/functools.py:504: ResourceWarning: unclosed database in 300s def lru_cache(maxsize=128, typed=False): 300s Enable tracemalloc to get traceback where the object was allocated. 300s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 300s 300s geometry/test_analysis.py::test_analysis 300s /usr/lib/python3/dist-packages/scipy/sparse/_coo.py:215: ResourceWarning: unclosed database in 300s self.coords = tuple(np.asarray(idx, dtype=idx_dtype) 300s Enable tracemalloc to get traceback where the object was allocated. 300s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 300s 300s gui/test_run.py::test_surface 300s /usr/lib/python3/dist-packages/_pytest/nodes.py:285: ResourceWarning: unclosed file <_io.TextIOWrapper name='/dev/null' mode='w' encoding='utf-8'> 300s def __hash__(self) -> int: 300s Enable tracemalloc to get traceback where the object was allocated. 300s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 300s 300s md/test_bussi.py::test_bussi 300s /usr/lib/python3/dist-packages/ase/test/md/test_bussi.py:15: ResourceWarning: unclosed file <_io.TextIOWrapper name='/dev/null' mode='a' encoding='utf-8'> 300s with pytest.raises(ValueError): 300s Enable tracemalloc to get traceback where the object was allocated. 300s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 300s 300s optimize/test_optimizers.py::test_run_twice[SciPyFminCG] 300s /usr/lib/python3/dist-packages/numpy/_core/_ufunc_config.py:454: ResourceWarning: unclosed file <_io.BufferedWriter name='fragile_BFGSLineSearch.traj'> 300s self._token = _extobj_contextvar.set(extobj) 300s Enable tracemalloc to get traceback where the object was allocated. 300s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 300s 300s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 300s ==== 2964 passed, 532 skipped, 26 xfailed, 20 warnings in 180.93s (0:03:00) ==== 301s :0: DeprecationWarning: builtin type swigvarlink has no __module__ attribute 302s autopkgtest [20:21:41]: test command1: -----------------------] 302s autopkgtest [20:21:41]: test command1: - - - - - - - - - - results - - - - - - - - - - 302s command1 PASS 303s autopkgtest [20:21:42]: @@@@@@@@@@@@@@@@@@@@ summary 303s command1 PASS