0s autopkgtest [20:47:54]: starting date and time: 2025-10-20 20:47:54+0000 0s autopkgtest [20:47:54]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [20:47:54]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.tgptvm9p/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:pytest,src:python-pluggy --apt-upgrade python-ase --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=pytest/8.4.2-1 python-pluggy/1.6.0-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-arm64-1.secgroup --name adt-resolute-arm64-python-ase-20251020-204754-juju-7f2275-prod-proposed-migration-environment-15-5156d03f-a6e5-4d2f-87ad-4ffe857cb4c9 --image adt/ubuntu-resolute-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 3s Creating nova instance adt-resolute-arm64-python-ase-20251020-204754-juju-7f2275-prod-proposed-migration-environment-15-5156d03f-a6e5-4d2f-87ad-4ffe857cb4c9 from image adt/ubuntu-resolute-arm64-server-20251020.img (UUID 53f7e888-0b33-40b7-be7f-09b2db152d64)... 59s autopkgtest [20:48:53]: testbed dpkg architecture: arm64 59s autopkgtest [20:48:53]: testbed apt version: 3.1.8ubuntu1 59s autopkgtest [20:48:53]: @@@@@@@@@@@@@@@@@@@@ test bed setup 59s autopkgtest [20:48:53]: testbed release detected to be: None 60s autopkgtest [20:48:54]: updating testbed package index (apt update) 61s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [83.3 kB] 61s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 61s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 61s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 61s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [646 kB] 61s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [14.3 kB] 61s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [59.3 kB] 61s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [5028 B] 61s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 Packages [115 kB] 61s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 Packages [43.8 kB] 61s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 Packages [409 kB] 61s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 Packages [5672 B] 62s Fetched 1382 kB in 1s (1359 kB/s) 62s Reading package lists... 63s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 63s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 63s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 63s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 64s Reading package lists... 64s Reading package lists... 64s Building dependency tree... 64s Reading state information... 64s Calculating upgrade... 65s The following packages will be upgraded: 65s libbrotli1 libjson-c5 python3-inflect python3-oauthlib python3-zipp 65s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 65s Need to get 512 kB of archives. 65s After this operation, 31.7 kB of additional disk space will be used. 65s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 libjson-c5 arm64 0.18+ds-1.1 [37.5 kB] 65s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 libbrotli1 arm64 1.1.0-2build6 [336 kB] 65s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-inflect all 7.5.0-1 [33.9 kB] 65s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-oauthlib all 3.3.1-1 [93.5 kB] 65s Get:5 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-zipp all 3.23.0-1 [10.4 kB] 66s dpkg-preconfigure: unable to re-open stdin: No such file or directory 66s Fetched 512 kB in 1s (949 kB/s) 66s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83364 files and directories currently installed.) 66s Preparing to unpack .../libjson-c5_0.18+ds-1.1_arm64.deb ... 66s Unpacking libjson-c5:arm64 (0.18+ds-1.1) over (0.18+ds-1) ... 66s Preparing to unpack .../libbrotli1_1.1.0-2build6_arm64.deb ... 66s Unpacking libbrotli1:arm64 (1.1.0-2build6) over (1.1.0-2build5) ... 66s Preparing to unpack .../python3-inflect_7.5.0-1_all.deb ... 66s Unpacking python3-inflect (7.5.0-1) over (7.3.1-2) ... 66s Preparing to unpack .../python3-oauthlib_3.3.1-1_all.deb ... 66s Unpacking python3-oauthlib (3.3.1-1) over (3.2.2-3) ... 66s Preparing to unpack .../python3-zipp_3.23.0-1_all.deb ... 66s Unpacking python3-zipp (3.23.0-1) over (3.21.0-1) ... 67s Setting up libbrotli1:arm64 (1.1.0-2build6) ... 67s Setting up python3-zipp (3.23.0-1) ... 67s Setting up python3-inflect (7.5.0-1) ... 67s Setting up python3-oauthlib (3.3.1-1) ... 67s Setting up libjson-c5:arm64 (0.18+ds-1.1) ... 67s Processing triggers for libc-bin (2.42-0ubuntu3) ... 67s autopkgtest [20:49:01]: upgrading testbed (apt dist-upgrade and autopurge) 67s Reading package lists... 68s Building dependency tree... 68s Reading state information... 68s Calculating upgrade... 68s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 68s Reading package lists... 69s Building dependency tree... 69s Reading state information... 69s Solving dependencies... 69s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 72s autopkgtest [20:49:06]: testbed running kernel: Linux 6.17.0-5-generic #5-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 22 09:50:31 UTC 2025 72s autopkgtest [20:49:06]: @@@@@@@@@@@@@@@@@@@@ apt-source python-ase 75s Get:1 http://ftpmaster.internal/ubuntu resolute/universe python-ase 3.24.0-1 (dsc) [2638 B] 75s Get:2 http://ftpmaster.internal/ubuntu resolute/universe python-ase 3.24.0-1 (tar) [2597 kB] 75s Get:3 http://ftpmaster.internal/ubuntu resolute/universe python-ase 3.24.0-1 (diff) [10.3 kB] 75s gpgv: Signature made Thu Mar 6 03:39:08 2025 UTC 75s gpgv: using RSA key 23C9A93E585819E9126D0A36573EF1E4BD5A01FA 75s gpgv: Can't check signature: No public key 75s dpkg-source: warning: cannot verify inline signature for ./python-ase_3.24.0-1.dsc: no acceptable signature found 76s autopkgtest [20:49:10]: testing package python-ase version 3.24.0-1 76s autopkgtest [20:49:10]: build not needed 77s autopkgtest [20:49:11]: test command1: preparing testbed 78s Reading package lists... 78s Building dependency tree... 78s Reading state information... 79s Solving dependencies... 80s The following NEW packages will be installed: 80s ase blt fontconfig-config fonts-dejavu-core fonts-dejavu-mono 80s fonts-font-awesome fonts-glyphicons-halflings fonts-lyx libaec0 libblas3 80s libdeflate0 libfontconfig1 libgfortran5 libgomp1 libgraphite2-3 80s libharfbuzz0b libhdf5-310 libhdf5-hl-310 libimagequant0 libjbig0 80s libjpeg-turbo8 libjpeg8 libjs-bootstrap libjs-jquery libjs-jquery-ui 80s liblapack3 liblcms2-2 liblerc4 libnetcdf22 libopenjp2-7 libqhull-r8.0 80s libraqm0 libsharpyuv0 libsymspg2 libsz2 libtcl8.6 libtiff6 libtk8.6 libwebp7 80s libwebpdemux2 libwebpmux3 libxft2 libxrender1 libxslt1.1 libxss1 libzopfli1 80s python-matplotlib-data python3-all python3-ase python3-brotli python3-cftime 80s python3-contourpy python3-cycler python3-dateutil python3-decorator 80s python3-fonttools python3-fs python3-iniconfig python3-kiwisolver 80s python3-lxml python3-lz4 python3-matplotlib python3-mpmath python3-netcdf4 80s python3-numpy python3-numpy-dev python3-packaging python3-pil 80s python3-pil.imagetk python3-platformdirs python3-pluggy python3-pycodcif 80s python3-pytest python3-pytest-mock python3-scipy python3-spglib 80s python3-sympy python3-tk python3-ufolib2 python3-zopfli python3.13-tk 80s tk8.6-blt2.5 unicode-data x11-common 80s 0 upgraded, 84 newly installed, 0 to remove and 0 not upgraded. 80s Need to get 75.7 MB of archives. 80s After this operation, 312 MB of additional disk space will be used. 80s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-numpy-dev arm64 1:2.2.4+ds-1ubuntu1 [146 kB] 81s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 libblas3 arm64 3.12.1-6build1 [186 kB] 81s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 libgfortran5 arm64 15.2.0-5ubuntu1 [450 kB] 82s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 liblapack3 arm64 3.12.1-6build1 [2340 kB] 83s Get:5 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-numpy arm64 1:2.2.4+ds-1ubuntu1 [3986 kB] 84s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 84s Get:7 http://ftpmaster.internal/ubuntu resolute/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-6 [119 kB] 84s Get:8 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-bootstrap all 3.4.1+dfsg-6 [129 kB] 84s Get:9 http://ftpmaster.internal/ubuntu resolute/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 84s Get:10 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 84s Get:11 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-decorator all 5.2.1-2 [28.1 kB] 84s Get:12 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-scipy arm64 1.15.3-1 [15.8 MB] 86s Get:13 http://ftpmaster.internal/ubuntu resolute/universe arm64 libsymspg2 arm64 2.6.0-3 [210 kB] 86s Get:14 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-spglib arm64 2.6.0-3 [31.8 kB] 86s Get:15 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 86s Get:16 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 86s Get:17 http://ftpmaster.internal/ubuntu resolute/universe arm64 fonts-lyx all 2.4.4-1 [171 kB] 86s Get:18 http://ftpmaster.internal/ubuntu resolute/universe arm64 python-matplotlib-data all 3.10.1+dfsg1-4 [2930 kB] 87s Get:19 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-dateutil all 2.9.0-4 [80.3 kB] 87s Get:20 http://ftpmaster.internal/ubuntu resolute/main arm64 libgomp1 arm64 15.2.0-5ubuntu1 [148 kB] 87s Get:21 http://ftpmaster.internal/ubuntu resolute/main arm64 libimagequant0 arm64 2.18.0-1build1 [37.1 kB] 87s Get:22 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg-turbo8 arm64 2.1.5-4ubuntu2 [165 kB] 87s Get:23 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 87s Get:24 http://ftpmaster.internal/ubuntu resolute/main arm64 liblcms2-2 arm64 2.16-2 [170 kB] 87s Get:25 http://ftpmaster.internal/ubuntu resolute/main arm64 libopenjp2-7 arm64 2.5.3-2.1 [179 kB] 87s Get:26 http://ftpmaster.internal/ubuntu resolute/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB] 87s Get:27 http://ftpmaster.internal/ubuntu resolute/main arm64 libharfbuzz0b arm64 12.1.0-1 [523 kB] 87s Get:28 http://ftpmaster.internal/ubuntu resolute/main arm64 libraqm0 arm64 0.10.3-1 [15.0 kB] 87s Get:29 http://ftpmaster.internal/ubuntu resolute/main arm64 libdeflate0 arm64 1.23-2 [46.4 kB] 87s Get:30 http://ftpmaster.internal/ubuntu resolute/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB] 87s Get:31 http://ftpmaster.internal/ubuntu resolute/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB] 87s Get:32 http://ftpmaster.internal/ubuntu resolute/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB] 87s Get:33 http://ftpmaster.internal/ubuntu resolute/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB] 87s Get:34 http://ftpmaster.internal/ubuntu resolute/main arm64 libtiff6 arm64 4.7.0-3ubuntu3 [196 kB] 87s Get:35 http://ftpmaster.internal/ubuntu resolute/main arm64 libwebpdemux2 arm64 1.5.0-0.1 [12.5 kB] 87s Get:36 http://ftpmaster.internal/ubuntu resolute/main arm64 libwebpmux3 arm64 1.5.0-0.1 [25.4 kB] 87s Get:37 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-pil arm64 11.3.0-1ubuntu1 [483 kB] 88s Get:38 http://ftpmaster.internal/ubuntu resolute/main arm64 libtcl8.6 arm64 8.6.17+dfsg-1 [1024 kB] 88s Get:39 http://ftpmaster.internal/ubuntu resolute/main arm64 fontconfig-config arm64 2.15.0-2.3ubuntu1 [38.1 kB] 88s Get:40 http://ftpmaster.internal/ubuntu resolute/main arm64 libfontconfig1 arm64 2.15.0-2.3ubuntu1 [144 kB] 88s Get:41 http://ftpmaster.internal/ubuntu resolute/main arm64 libxrender1 arm64 1:0.9.12-1 [19.5 kB] 88s Get:42 http://ftpmaster.internal/ubuntu resolute/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB] 88s Get:43 http://ftpmaster.internal/ubuntu resolute/main arm64 x11-common all 1:7.7+24ubuntu1 [22.4 kB] 88s Get:44 http://ftpmaster.internal/ubuntu resolute/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B] 88s Get:45 http://ftpmaster.internal/ubuntu resolute/main arm64 libtk8.6 arm64 8.6.17-1 [811 kB] 88s Get:46 http://ftpmaster.internal/ubuntu resolute/main arm64 python3.13-tk arm64 3.13.7-1 [108 kB] 88s Get:47 http://ftpmaster.internal/ubuntu resolute/main arm64 tk8.6-blt2.5 arm64 2.5.3+dfsg-8 [624 kB] 88s Get:48 http://ftpmaster.internal/ubuntu resolute/main arm64 blt arm64 2.5.3+dfsg-8 [4824 B] 88s Get:49 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-tk arm64 3.13.5-1 [9916 B] 88s Get:50 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pil.imagetk arm64 11.3.0-1ubuntu1 [9878 B] 88s Get:51 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-contourpy arm64 1.3.1-1build1 [182 kB] 88s Get:52 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-cycler all 0.12.1-1 [9716 B] 88s Get:53 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-brotli arm64 1.1.0-2build6 [343 kB] 88s Get:54 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-platformdirs all 4.3.7-1 [16.9 kB] 88s Get:55 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-fs all 2.4.16-7 [90.8 kB] 88s Get:56 http://ftpmaster.internal/ubuntu resolute/main arm64 libxslt1.1 arm64 1.1.43-0.1 [171 kB] 88s Get:57 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-lxml arm64 6.0.1-1 [1428 kB] 88s Get:58 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-lz4 arm64 4.4.0+dfsg-2 [27.1 kB] 88s Get:59 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-mpmath all 1.3.0-1 [425 kB] 88s Get:60 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-sympy all 1.13.3-5 [4229 kB] 89s Get:61 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-ufolib2 all 0.17.1+dfsg1-1 [33.5 kB] 89s Get:62 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-all arm64 3.13.7-1 [884 B] 89s Get:63 http://ftpmaster.internal/ubuntu resolute/universe arm64 libzopfli1 arm64 1.0.3-3 [108 kB] 89s Get:64 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-zopfli arm64 0.2.3.post1-1 [10.7 kB] 89s Get:65 http://ftpmaster.internal/ubuntu resolute/universe arm64 unicode-data all 16.0.0-1 [9513 kB] 90s Get:66 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-fonttools arm64 4.57.0-1 [1453 kB] 90s Get:67 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-kiwisolver arm64 1.4.7-3build2 [60.7 kB] 90s Get:68 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-packaging all 25.0-1 [52.8 kB] 90s Get:69 http://ftpmaster.internal/ubuntu resolute/universe arm64 libqhull-r8.0 arm64 2020.2-6build1 [189 kB] 90s Get:70 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-matplotlib arm64 3.10.1+dfsg1-4 [18.0 MB] 90s Get:71 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-ase all 3.24.0-1 [1787 kB] 91s Get:72 http://ftpmaster.internal/ubuntu resolute/universe arm64 ase all 3.24.0-1 [31.1 kB] 91s Get:73 http://ftpmaster.internal/ubuntu resolute/universe arm64 libaec0 arm64 1.1.3-1 [22.0 kB] 91s Get:74 http://ftpmaster.internal/ubuntu resolute/universe arm64 libsz2 arm64 1.1.3-1 [5254 B] 91s Get:75 http://ftpmaster.internal/ubuntu resolute/universe arm64 libhdf5-310 arm64 1.14.5+repack-3build1 [1331 kB] 91s Get:76 http://ftpmaster.internal/ubuntu resolute/universe arm64 libhdf5-hl-310 arm64 1.14.5+repack-3build1 [59.8 kB] 91s Get:77 http://ftpmaster.internal/ubuntu resolute/universe arm64 libnetcdf22 arm64 1:4.9.3-1build1 [555 kB] 91s Get:78 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-cftime arm64 1.6.4-2 [208 kB] 91s Get:79 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-iniconfig all 1.1.1-2 [6024 B] 91s Get:80 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-netcdf4 arm64 1.7.2-1build4 [587 kB] 91s Get:81 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 python3-pluggy all 1.6.0-1 [21.0 kB] 91s Get:82 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pycodcif arm64 3.11.0+dfsg-1 [68.9 kB] 91s Get:83 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 python3-pytest all 8.4.2-1 [268 kB] 91s Get:84 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pytest-mock all 3.14.0-3 [11.8 kB] 91s Fetched 75.7 MB in 11s (7029 kB/s) 91s Selecting previously unselected package python3-numpy-dev:arm64. 91s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83374 files and directories currently installed.) 91s Preparing to unpack .../00-python3-numpy-dev_1%3a2.2.4+ds-1ubuntu1_arm64.deb ... 91s Unpacking python3-numpy-dev:arm64 (1:2.2.4+ds-1ubuntu1) ... 91s Selecting previously unselected package libblas3:arm64. 91s Preparing to unpack .../01-libblas3_3.12.1-6build1_arm64.deb ... 91s Unpacking libblas3:arm64 (3.12.1-6build1) ... 91s Selecting previously unselected package libgfortran5:arm64. 91s Preparing to unpack .../02-libgfortran5_15.2.0-5ubuntu1_arm64.deb ... 91s Unpacking libgfortran5:arm64 (15.2.0-5ubuntu1) ... 91s Selecting previously unselected package liblapack3:arm64. 91s Preparing to unpack .../03-liblapack3_3.12.1-6build1_arm64.deb ... 91s Unpacking liblapack3:arm64 (3.12.1-6build1) ... 91s Selecting previously unselected package python3-numpy. 91s Preparing to unpack .../04-python3-numpy_1%3a2.2.4+ds-1ubuntu1_arm64.deb ... 91s Unpacking python3-numpy (1:2.2.4+ds-1ubuntu1) ... 92s Selecting previously unselected package fonts-font-awesome. 92s Preparing to unpack .../05-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 92s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 92s Selecting previously unselected package fonts-glyphicons-halflings. 92s Preparing to unpack .../06-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-6_all.deb ... 92s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-6) ... 92s Selecting previously unselected package libjs-bootstrap. 92s Preparing to unpack .../07-libjs-bootstrap_3.4.1+dfsg-6_all.deb ... 92s Unpacking libjs-bootstrap (3.4.1+dfsg-6) ... 92s Selecting previously unselected package libjs-jquery. 92s Preparing to unpack .../08-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 92s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 92s Selecting previously unselected package libjs-jquery-ui. 92s Preparing to unpack .../09-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 92s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 92s Selecting previously unselected package python3-decorator. 92s Preparing to unpack .../10-python3-decorator_5.2.1-2_all.deb ... 92s Unpacking python3-decorator (5.2.1-2) ... 92s Selecting previously unselected package python3-scipy. 92s Preparing to unpack .../11-python3-scipy_1.15.3-1_arm64.deb ... 92s Unpacking python3-scipy (1.15.3-1) ... 92s Selecting previously unselected package libsymspg2:arm64. 92s Preparing to unpack .../12-libsymspg2_2.6.0-3_arm64.deb ... 92s Unpacking libsymspg2:arm64 (2.6.0-3) ... 92s Selecting previously unselected package python3-spglib. 92s Preparing to unpack .../13-python3-spglib_2.6.0-3_arm64.deb ... 92s Unpacking python3-spglib (2.6.0-3) ... 92s Selecting previously unselected package fonts-dejavu-mono. 92s Preparing to unpack .../14-fonts-dejavu-mono_2.37-8_all.deb ... 92s Unpacking fonts-dejavu-mono (2.37-8) ... 92s Selecting previously unselected package fonts-dejavu-core. 92s Preparing to unpack .../15-fonts-dejavu-core_2.37-8_all.deb ... 92s Unpacking fonts-dejavu-core (2.37-8) ... 92s Selecting previously unselected package fonts-lyx. 92s Preparing to unpack .../16-fonts-lyx_2.4.4-1_all.deb ... 92s Unpacking fonts-lyx (2.4.4-1) ... 92s Selecting previously unselected package python-matplotlib-data. 92s Preparing to unpack .../17-python-matplotlib-data_3.10.1+dfsg1-4_all.deb ... 92s Unpacking python-matplotlib-data (3.10.1+dfsg1-4) ... 93s Selecting previously unselected package python3-dateutil. 93s Preparing to unpack .../18-python3-dateutil_2.9.0-4_all.deb ... 93s Unpacking python3-dateutil (2.9.0-4) ... 93s Selecting previously unselected package libgomp1:arm64. 93s Preparing to unpack .../19-libgomp1_15.2.0-5ubuntu1_arm64.deb ... 93s Unpacking libgomp1:arm64 (15.2.0-5ubuntu1) ... 93s Selecting previously unselected package libimagequant0:arm64. 93s Preparing to unpack .../20-libimagequant0_2.18.0-1build1_arm64.deb ... 93s Unpacking libimagequant0:arm64 (2.18.0-1build1) ... 93s Selecting previously unselected package libjpeg-turbo8:arm64. 93s Preparing to unpack .../21-libjpeg-turbo8_2.1.5-4ubuntu2_arm64.deb ... 93s Unpacking libjpeg-turbo8:arm64 (2.1.5-4ubuntu2) ... 93s Selecting previously unselected package libjpeg8:arm64. 93s Preparing to unpack .../22-libjpeg8_8c-2ubuntu11_arm64.deb ... 93s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 93s Selecting previously unselected package liblcms2-2:arm64. 93s Preparing to unpack .../23-liblcms2-2_2.16-2_arm64.deb ... 93s Unpacking liblcms2-2:arm64 (2.16-2) ... 93s Selecting previously unselected package libopenjp2-7:arm64. 93s Preparing to unpack .../24-libopenjp2-7_2.5.3-2.1_arm64.deb ... 93s Unpacking libopenjp2-7:arm64 (2.5.3-2.1) ... 93s Selecting previously unselected package libgraphite2-3:arm64. 93s Preparing to unpack .../25-libgraphite2-3_1.3.14-2ubuntu1_arm64.deb ... 93s Unpacking libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 93s Selecting previously unselected package libharfbuzz0b:arm64. 93s Preparing to unpack .../26-libharfbuzz0b_12.1.0-1_arm64.deb ... 93s Unpacking libharfbuzz0b:arm64 (12.1.0-1) ... 93s Selecting previously unselected package libraqm0:arm64. 93s Preparing to unpack .../27-libraqm0_0.10.3-1_arm64.deb ... 93s Unpacking libraqm0:arm64 (0.10.3-1) ... 93s Selecting previously unselected package libdeflate0:arm64. 93s Preparing to unpack .../28-libdeflate0_1.23-2_arm64.deb ... 93s Unpacking libdeflate0:arm64 (1.23-2) ... 93s Selecting previously unselected package libjbig0:arm64. 93s Preparing to unpack .../29-libjbig0_2.1-6.1ubuntu2_arm64.deb ... 93s Unpacking libjbig0:arm64 (2.1-6.1ubuntu2) ... 93s Selecting previously unselected package liblerc4:arm64. 93s Preparing to unpack .../30-liblerc4_4.0.0+ds-5ubuntu1_arm64.deb ... 93s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 93s Selecting previously unselected package libsharpyuv0:arm64. 93s Preparing to unpack .../31-libsharpyuv0_1.5.0-0.1_arm64.deb ... 93s Unpacking libsharpyuv0:arm64 (1.5.0-0.1) ... 93s Selecting previously unselected package libwebp7:arm64. 93s Preparing to unpack .../32-libwebp7_1.5.0-0.1_arm64.deb ... 93s Unpacking libwebp7:arm64 (1.5.0-0.1) ... 93s Selecting previously unselected package libtiff6:arm64. 93s Preparing to unpack .../33-libtiff6_4.7.0-3ubuntu3_arm64.deb ... 93s Unpacking libtiff6:arm64 (4.7.0-3ubuntu3) ... 93s Selecting previously unselected package libwebpdemux2:arm64. 93s Preparing to unpack .../34-libwebpdemux2_1.5.0-0.1_arm64.deb ... 93s Unpacking libwebpdemux2:arm64 (1.5.0-0.1) ... 93s Selecting previously unselected package libwebpmux3:arm64. 93s Preparing to unpack .../35-libwebpmux3_1.5.0-0.1_arm64.deb ... 93s Unpacking libwebpmux3:arm64 (1.5.0-0.1) ... 93s Selecting previously unselected package python3-pil:arm64. 93s Preparing to unpack .../36-python3-pil_11.3.0-1ubuntu1_arm64.deb ... 93s Unpacking python3-pil:arm64 (11.3.0-1ubuntu1) ... 93s Selecting previously unselected package libtcl8.6:arm64. 93s Preparing to unpack .../37-libtcl8.6_8.6.17+dfsg-1_arm64.deb ... 93s Unpacking libtcl8.6:arm64 (8.6.17+dfsg-1) ... 93s Selecting previously unselected package fontconfig-config. 93s Preparing to unpack .../38-fontconfig-config_2.15.0-2.3ubuntu1_arm64.deb ... 94s Unpacking fontconfig-config (2.15.0-2.3ubuntu1) ... 94s Selecting previously unselected package libfontconfig1:arm64. 94s Preparing to unpack .../39-libfontconfig1_2.15.0-2.3ubuntu1_arm64.deb ... 94s Unpacking libfontconfig1:arm64 (2.15.0-2.3ubuntu1) ... 94s Selecting previously unselected package libxrender1:arm64. 94s Preparing to unpack .../40-libxrender1_1%3a0.9.12-1_arm64.deb ... 94s Unpacking libxrender1:arm64 (1:0.9.12-1) ... 94s Selecting previously unselected package libxft2:arm64. 94s Preparing to unpack .../41-libxft2_2.3.6-1build1_arm64.deb ... 94s Unpacking libxft2:arm64 (2.3.6-1build1) ... 94s Selecting previously unselected package x11-common. 94s Preparing to unpack .../42-x11-common_1%3a7.7+24ubuntu1_all.deb ... 94s Unpacking x11-common (1:7.7+24ubuntu1) ... 94s Selecting previously unselected package libxss1:arm64. 94s Preparing to unpack .../43-libxss1_1%3a1.2.3-1build3_arm64.deb ... 94s Unpacking libxss1:arm64 (1:1.2.3-1build3) ... 94s Selecting previously unselected package libtk8.6:arm64. 94s Preparing to unpack .../44-libtk8.6_8.6.17-1_arm64.deb ... 94s Unpacking libtk8.6:arm64 (8.6.17-1) ... 94s Selecting previously unselected package python3.13-tk. 94s Preparing to unpack .../45-python3.13-tk_3.13.7-1_arm64.deb ... 94s Unpacking python3.13-tk (3.13.7-1) ... 94s Selecting previously unselected package tk8.6-blt2.5. 94s Preparing to unpack .../46-tk8.6-blt2.5_2.5.3+dfsg-8_arm64.deb ... 94s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-8) ... 94s Selecting previously unselected package blt. 94s Preparing to unpack .../47-blt_2.5.3+dfsg-8_arm64.deb ... 94s Unpacking blt (2.5.3+dfsg-8) ... 94s Selecting previously unselected package python3-tk:arm64. 94s Preparing to unpack .../48-python3-tk_3.13.5-1_arm64.deb ... 94s Unpacking python3-tk:arm64 (3.13.5-1) ... 94s Selecting previously unselected package python3-pil.imagetk:arm64. 94s Preparing to unpack .../49-python3-pil.imagetk_11.3.0-1ubuntu1_arm64.deb ... 94s Unpacking python3-pil.imagetk:arm64 (11.3.0-1ubuntu1) ... 94s Selecting previously unselected package python3-contourpy. 94s Preparing to unpack .../50-python3-contourpy_1.3.1-1build1_arm64.deb ... 94s Unpacking python3-contourpy (1.3.1-1build1) ... 94s Selecting previously unselected package python3-cycler. 94s Preparing to unpack .../51-python3-cycler_0.12.1-1_all.deb ... 94s Unpacking python3-cycler (0.12.1-1) ... 94s Selecting previously unselected package python3-brotli. 94s Preparing to unpack .../52-python3-brotli_1.1.0-2build6_arm64.deb ... 94s Unpacking python3-brotli (1.1.0-2build6) ... 94s Selecting previously unselected package python3-platformdirs. 94s Preparing to unpack .../53-python3-platformdirs_4.3.7-1_all.deb ... 94s Unpacking python3-platformdirs (4.3.7-1) ... 94s Selecting previously unselected package python3-fs. 94s Preparing to unpack .../54-python3-fs_2.4.16-7_all.deb ... 94s Unpacking python3-fs (2.4.16-7) ... 94s Selecting previously unselected package libxslt1.1:arm64. 94s Preparing to unpack .../55-libxslt1.1_1.1.43-0.1_arm64.deb ... 94s Unpacking libxslt1.1:arm64 (1.1.43-0.1) ... 94s Selecting previously unselected package python3-lxml:arm64. 94s Preparing to unpack .../56-python3-lxml_6.0.1-1_arm64.deb ... 94s Unpacking python3-lxml:arm64 (6.0.1-1) ... 94s Selecting previously unselected package python3-lz4. 94s Preparing to unpack .../57-python3-lz4_4.4.0+dfsg-2_arm64.deb ... 94s Unpacking python3-lz4 (4.4.0+dfsg-2) ... 94s Selecting previously unselected package python3-mpmath. 94s Preparing to unpack .../58-python3-mpmath_1.3.0-1_all.deb ... 94s Unpacking python3-mpmath (1.3.0-1) ... 94s Selecting previously unselected package python3-sympy. 94s Preparing to unpack .../59-python3-sympy_1.13.3-5_all.deb ... 94s Unpacking python3-sympy (1.13.3-5) ... 95s Selecting previously unselected package python3-ufolib2. 95s Preparing to unpack .../60-python3-ufolib2_0.17.1+dfsg1-1_all.deb ... 95s Unpacking python3-ufolib2 (0.17.1+dfsg1-1) ... 95s Selecting previously unselected package python3-all. 95s Preparing to unpack .../61-python3-all_3.13.7-1_arm64.deb ... 95s Unpacking python3-all (3.13.7-1) ... 95s Selecting previously unselected package libzopfli1. 95s Preparing to unpack .../62-libzopfli1_1.0.3-3_arm64.deb ... 95s Unpacking libzopfli1 (1.0.3-3) ... 95s Selecting previously unselected package python3-zopfli. 95s Preparing to unpack .../63-python3-zopfli_0.2.3.post1-1_arm64.deb ... 95s Unpacking python3-zopfli (0.2.3.post1-1) ... 95s Selecting previously unselected package unicode-data. 95s Preparing to unpack .../64-unicode-data_16.0.0-1_all.deb ... 95s Unpacking unicode-data (16.0.0-1) ... 95s Selecting previously unselected package python3-fonttools. 95s Preparing to unpack .../65-python3-fonttools_4.57.0-1_arm64.deb ... 95s Unpacking python3-fonttools (4.57.0-1) ... 95s Selecting previously unselected package python3-kiwisolver. 95s Preparing to unpack .../66-python3-kiwisolver_1.4.7-3build2_arm64.deb ... 95s Unpacking python3-kiwisolver (1.4.7-3build2) ... 95s Selecting previously unselected package python3-packaging. 95s Preparing to unpack .../67-python3-packaging_25.0-1_all.deb ... 95s Unpacking python3-packaging (25.0-1) ... 95s Selecting previously unselected package libqhull-r8.0:arm64. 95s Preparing to unpack .../68-libqhull-r8.0_2020.2-6build1_arm64.deb ... 95s Unpacking libqhull-r8.0:arm64 (2020.2-6build1) ... 95s Selecting previously unselected package python3-matplotlib. 95s Preparing to unpack .../69-python3-matplotlib_3.10.1+dfsg1-4_arm64.deb ... 95s Unpacking python3-matplotlib (3.10.1+dfsg1-4) ... 95s Selecting previously unselected package python3-ase. 96s Preparing to unpack .../70-python3-ase_3.24.0-1_all.deb ... 96s Unpacking python3-ase (3.24.0-1) ... 96s Selecting previously unselected package ase. 96s Preparing to unpack .../71-ase_3.24.0-1_all.deb ... 96s Unpacking ase (3.24.0-1) ... 96s Selecting previously unselected package libaec0:arm64. 96s Preparing to unpack .../72-libaec0_1.1.3-1_arm64.deb ... 96s Unpacking libaec0:arm64 (1.1.3-1) ... 96s Selecting previously unselected package libsz2:arm64. 96s Preparing to unpack .../73-libsz2_1.1.3-1_arm64.deb ... 96s Unpacking libsz2:arm64 (1.1.3-1) ... 96s Selecting previously unselected package libhdf5-310:arm64. 96s Preparing to unpack .../74-libhdf5-310_1.14.5+repack-3build1_arm64.deb ... 96s Unpacking libhdf5-310:arm64 (1.14.5+repack-3build1) ... 96s Selecting previously unselected package libhdf5-hl-310:arm64. 96s Preparing to unpack .../75-libhdf5-hl-310_1.14.5+repack-3build1_arm64.deb ... 96s Unpacking libhdf5-hl-310:arm64 (1.14.5+repack-3build1) ... 96s Selecting previously unselected package libnetcdf22:arm64. 96s Preparing to unpack .../76-libnetcdf22_1%3a4.9.3-1build1_arm64.deb ... 96s Unpacking libnetcdf22:arm64 (1:4.9.3-1build1) ... 96s Selecting previously unselected package python3-cftime. 96s Preparing to unpack .../77-python3-cftime_1.6.4-2_arm64.deb ... 96s Unpacking python3-cftime (1.6.4-2) ... 96s Selecting previously unselected package python3-iniconfig. 96s Preparing to unpack .../78-python3-iniconfig_1.1.1-2_all.deb ... 96s Unpacking python3-iniconfig (1.1.1-2) ... 96s Selecting previously unselected package python3-netcdf4. 96s Preparing to unpack .../79-python3-netcdf4_1.7.2-1build4_arm64.deb ... 96s Unpacking python3-netcdf4 (1.7.2-1build4) ... 96s Selecting previously unselected package python3-pluggy. 96s Preparing to unpack .../80-python3-pluggy_1.6.0-1_all.deb ... 96s Unpacking python3-pluggy (1.6.0-1) ... 96s Selecting previously unselected package python3-pycodcif. 96s Preparing to unpack .../81-python3-pycodcif_3.11.0+dfsg-1_arm64.deb ... 96s Unpacking python3-pycodcif (3.11.0+dfsg-1) ... 96s Selecting previously unselected package python3-pytest. 96s Preparing to unpack .../82-python3-pytest_8.4.2-1_all.deb ... 96s Unpacking python3-pytest (8.4.2-1) ... 96s Selecting previously unselected package python3-pytest-mock. 96s Preparing to unpack .../83-python3-pytest-mock_3.14.0-3_all.deb ... 96s Unpacking python3-pytest-mock (3.14.0-3) ... 96s Setting up libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 96s Setting up liblcms2-2:arm64 (2.16-2) ... 96s Setting up python3-iniconfig (1.1.1-2) ... 96s Setting up libsharpyuv0:arm64 (1.5.0-0.1) ... 96s Setting up liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 96s Setting up libxrender1:arm64 (1:0.9.12-1) ... 96s Setting up python3-lz4 (4.4.0+dfsg-2) ... 96s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-6) ... 96s Setting up fonts-lyx (2.4.4-1) ... 96s Setting up x11-common (1:7.7+24ubuntu1) ... 97s Setting up libdeflate0:arm64 (1.23-2) ... 97s Setting up libqhull-r8.0:arm64 (2020.2-6build1) ... 97s Setting up python3-all (3.13.7-1) ... 97s Setting up python3-pycodcif (3.11.0+dfsg-1) ... 97s Setting up libgomp1:arm64 (15.2.0-5ubuntu1) ... 97s Setting up libjbig0:arm64 (2.1-6.1ubuntu2) ... 97s Setting up libaec0:arm64 (1.1.3-1) ... 97s Setting up python3-platformdirs (4.3.7-1) ... 97s Setting up python3-fs (2.4.16-7) ... 97s Setting up unicode-data (16.0.0-1) ... 97s Setting up libsymspg2:arm64 (2.6.0-3) ... 97s Setting up python3-decorator (5.2.1-2) ... 97s Setting up libblas3:arm64 (3.12.1-6build1) ... 97s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 97s Setting up python3-packaging (25.0-1) ... 97s Setting up libzopfli1 (1.0.3-3) ... 97s Setting up python3-brotli (1.1.0-2build6) ... 98s Setting up python3-cycler (0.12.1-1) ... 98s Setting up libimagequant0:arm64 (2.18.0-1build1) ... 98s Setting up fonts-dejavu-mono (2.37-8) ... 98s Setting up python3-kiwisolver (1.4.7-3build2) ... 98s Setting up python3-numpy-dev:arm64 (1:2.2.4+ds-1ubuntu1) ... 98s Setting up libtcl8.6:arm64 (8.6.17+dfsg-1) ... 98s Setting up fonts-dejavu-core (2.37-8) ... 98s Setting up libjpeg-turbo8:arm64 (2.1.5-4ubuntu2) ... 98s Setting up libgfortran5:arm64 (15.2.0-5ubuntu1) ... 98s Setting up python3-pluggy (1.6.0-1) ... 98s Setting up libwebp7:arm64 (1.5.0-0.1) ... 98s Setting up libxslt1.1:arm64 (1.1.43-0.1) ... 98s Setting up libopenjp2-7:arm64 (2.5.3-2.1) ... 98s Setting up libharfbuzz0b:arm64 (12.1.0-1) ... 98s Setting up python3-dateutil (2.9.0-4) ... 98s Setting up libxss1:arm64 (1:1.2.3-1build3) ... 98s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 98s Setting up python3-mpmath (1.3.0-1) ... 99s Setting up python-matplotlib-data (3.10.1+dfsg1-4) ... 99s Setting up libwebpmux3:arm64 (1.5.0-0.1) ... 99s Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 99s Setting up libsz2:arm64 (1.1.3-1) ... 99s Setting up libjs-bootstrap (3.4.1+dfsg-6) ... 99s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 99s Setting up python3-sympy (1.13.3-5) ... 104s Setting up liblapack3:arm64 (3.12.1-6build1) ... 104s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 104s Setting up fontconfig-config (2.15.0-2.3ubuntu1) ... 105s Setting up python3-pytest (8.4.2-1) ... 105s Setting up libwebpdemux2:arm64 (1.5.0-0.1) ... 105s Setting up python3-zopfli (0.2.3.post1-1) ... 105s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 105s Setting up libraqm0:arm64 (0.10.3-1) ... 105s Setting up python3-numpy (1:2.2.4+ds-1ubuntu1) ... 107s Setting up libhdf5-310:arm64 (1.14.5+repack-3build1) ... 107s Setting up python3-pytest-mock (3.14.0-3) ... 107s Setting up python3-lxml:arm64 (6.0.1-1) ... 107s Setting up libtiff6:arm64 (4.7.0-3ubuntu3) ... 107s Setting up python3-contourpy (1.3.1-1build1) ... 107s Setting up libfontconfig1:arm64 (2.15.0-2.3ubuntu1) ... 107s Setting up python3-spglib (2.6.0-3) ... 107s Setting up libhdf5-hl-310:arm64 (1.14.5+repack-3build1) ... 107s Setting up libxft2:arm64 (2.3.6-1build1) ... 107s Setting up python3-scipy (1.15.3-1) ... 111s Setting up libtk8.6:arm64 (8.6.17-1) ... 111s Setting up libnetcdf22:arm64 (1:4.9.3-1build1) ... 111s Setting up python3.13-tk (3.13.7-1) ... 111s Setting up python3-pil:arm64 (11.3.0-1ubuntu1) ... 111s Setting up python3-cftime (1.6.4-2) ... 111s Setting up python3-netcdf4 (1.7.2-1build4) ... 111s Setting up tk8.6-blt2.5 (2.5.3+dfsg-8) ... 111s Setting up blt (2.5.3+dfsg-8) ... 111s Setting up python3-tk:arm64 (3.13.5-1) ... 111s Setting up python3-pil.imagetk:arm64 (11.3.0-1ubuntu1) ... 111s Setting up python3-fonttools (4.57.0-1) ... 112s Setting up python3-ufolib2 (0.17.1+dfsg1-1) ... 112s Setting up python3-matplotlib (3.10.1+dfsg1-4) ... 114s Setting up python3-ase (3.24.0-1) ... 115s Setting up ase (3.24.0-1) ... 115s Processing triggers for libc-bin (2.42-0ubuntu3) ... 115s Processing triggers for man-db (2.13.1-1) ... 117s autopkgtest [20:49:51]: test command1: for py in $(py3versions -s); do cd "$AUTOPKGTEST_TMP"; $py -m ase test --pytest -p no:cacheprovider; done 117s autopkgtest [20:49:51]: test command1: [----------------------- 118s About to run pytest with these parameters: 118s -p 118s no:cacheprovider 124s ============================= test session starts ============================== 124s platform linux -- Python 3.13.7, pytest-8.4.2, pluggy-1.6.0 124s 124s Libraries 124s ========= 124s 124s ase-3.24.0 /usr/lib/python3/dist-packages/ase 124s numpy-2.2.4 /usr/lib/python3/dist-packages/numpy 124s scipy-1.15.3 /usr/lib/python3/dist-packages/scipy 124s matplotlib-3.10.1+dfsg1 /usr/lib/python3/dist-packages/matplotlib 124s spglib-2.6.0 /usr/lib/python3/dist-packages/spglib 124s ase_ext not installed 124s flask not installed 124s psycopg2 not installed 124s pyamg not installed 124s 124s 124s Calculators 124s =========== 124s Config: No configuration file specified 124s Datafiles: ase-datafiles package not installed 124s 124s [ ] abinit not installed: 'abinit' 124s [ ] ace cfg= 124s [ ] aims not installed: 'aims' 124s [ ] amber cfg= 124s [ ] asap not installed: asap3 124s [ ] castep not installed: 'castep' 124s [ ] cp2k not installed: 'cp2k' 124s [ ] crystal cfg= 124s [ ] demon cfg= 124s [ ] demonnano cfg= 124s [ ] dftb not installed: No 'dftb' section 124s [ ] dftd3 not installed: 'dftd3' 124s [ ] dmol cfg= 124s [ ] elk not installed: No 'elk' section 124s [ ] espresso not installed: 'espresso' 124s [ ] exciting not installed: 'exciting' 124s [ ] gamess_us cfg= 124s [ ] gaussian cfg= 124s [ ] gpaw not installed: gpaw 124s [ ] gromacs not installed: 'gromacs' 124s [ ] gulp cfg= 124s [ ] hotbit cfg= 124s [ ] lammpslib not installed: missing python wrappers: cannot import lammps 124s [ ] lammpsrun not installed: 'lammps' 124s [ ] mopac not installed: No 'mopac' section 124s [ ] nwchem not installed: No 'nwchem' section 124s [ ] octopus not installed: 'octopus' 124s [ ] onetep cfg= 124s [ ] openmx not installed: 'openmx' 124s [ ] orca not installed: 'orca' 124s [ ] plumed not installed: 124s [ ] psi4 not installed: psi4 124s [ ] qchem cfg= 124s [ ] siesta not installed: No 'siesta' section 124s [ ] turbomole cfg= 124s [ ] vasp not installed: 'vasp' 124s 124s * Use --calculators option to select calculators. 124s 124s * See "ase test --help-calculators" on how to configure calculators. 124s 124s * This listing only includes external calculators known by the test 124s system. Others are "configured" by setting an environment variable 124s like "ASE_xxx_COMMAND" in order to allow tests to run. Please see 124s the documentation of that individual calculator. 124s 124s 124s rootdir: /usr/lib/python3/dist-packages/ase/test 124s configfile: pytest.ini 124s plugins: typeguard-4.4.2, mock-3.14.0 124s collected 3522 items 124s 124s atoms/test_atom.py .. [ 0%] 124s atoms/test_atom_scaled_pos.py ... [ 0%] 124s atoms/test_atoms.py .............. [ 0%] 124s atoms/test_atoms_angle.py . [ 0%] 124s atoms/test_atoms_distance.py .. [ 0%] 124s atoms/test_atoms_formula.py . [ 0%] 124s atoms/test_atoms_get_duplicates.py . [ 0%] 124s atoms/test_atoms_get_positions.py ... [ 0%] 124s atoms/test_atoms_getitem.py ............. [ 1%] 124s atoms/test_atoms_indices.py . [ 1%] 124s atoms/test_atoms_info_copy.py . [ 1%] 124s atoms/test_atoms_instantiation.py .... [ 1%] 124s atoms/test_build.py . [ 1%] 124s atoms/test_center.py ........... [ 1%] 124s atoms/test_center_nonperiodic.py . [ 1%] 124s atoms/test_compare_atoms.py . [ 1%] 124s atoms/test_deprecated_get_set.py ... [ 1%] 124s atoms/test_get_angles.py . [ 1%] 124s atoms/test_h2.py . [ 1%] 124s atoms/test_mic.py . [ 1%] 124s atoms/test_momenta_velocities.py ... [ 1%] 124s atoms/test_permute_axes.py . [ 1%] 124s atoms/test_rotate.py . [ 2%] 124s atoms/test_rotate_euler.py . [ 2%] 124s atoms/test_scaled_positions.py . [ 2%] 124s atoms/test_set_get_angle.py . [ 2%] 124s bandstructure/test_bandpath.py ....... [ 2%] 124s bandstructure/test_bandstructure.py ... [ 2%] 124s bandstructure/test_bandstructure_json.py . [ 2%] 127s bandstructure/test_bandstructure_many.py ....................... [ 3%] 127s bandstructure/test_bandstructure_transform_mcl.py . [ 3%] 128s bandstructure/test_resolve_custom_kpoints.py ..... [ 3%] 128s bravais/test_2d_cell_pbc.py ..... [ 3%] 128s bravais/test_bravais_type_engine.py ................. [ 3%] 128s bravais/test_eps.py .. [ 3%] 128s bravais/test_hex.py . [ 3%] 128s bravais/test_lattices.py ............................................... [ 5%] 128s .. [ 5%] 128s bravais/test_line_lattice.py . [ 5%] 129s bravais/test_main.py ......................... [ 6%] 129s bravais/test_orcc_mcl.py . [ 6%] 129s bravais/test_reduce.py . [ 6%] 129s bravais/test_standard_form.py ....................... [ 6%] 129s build_/test_attach.py .... [ 6%] 129s build_/test_build_bulk.py .............................................. [ 8%] 129s ........................................................................ [ 10%] 130s ........................................................................ [ 12%] 130s .................................................. [ 13%] 130s build_/test_bulk.py .......... [ 13%] 130s build_/test_connected.py .... [ 14%] 130s build_/test_minimize_rotation_and_translation.py .. [ 14%] 131s build_/test_supercells.py .............................................. [ 15%] 133s .............. [ 15%] 133s build_/test_surface.py ... [ 15%] 133s build_/test_surface_stack.py . [ 15%] 133s build_/test_surface_terminations.py . [ 16%] 133s calculator/abinit/test_abinit_cmdline.py s [ 16%] 133s calculator/abinit/test_main.py sssssssss [ 16%] 133s calculator/ace/test_ace.py s [ 16%] 133s calculator/ace/test_ace_calculator.py . [ 16%] 133s calculator/aims/test_H2O_aims.py s [ 16%] 133s calculator/aims/test_aims_interface.py s [ 16%] 133s calculator/aims/test_version.py . [ 16%] 133s calculator/amber/test_amber.py s [ 16%] 133s calculator/castep/test_castep_interface.py ........ [ 16%] 133s calculator/cp2k/test_cp2k_H2_None.py s [ 16%] 133s calculator/cp2k/test_cp2k_dcd.py s [ 16%] 133s calculator/cp2k/test_cp2k_many.py ssssssssssss [ 17%] 133s calculator/cp2k/test_cp2k_restart.py . [ 17%] 133s calculator/cp2k/test_cp2k_stress.py s [ 17%] 133s calculator/crystal/test_bulk.py s [ 17%] 133s calculator/crystal/test_graphene.py s [ 17%] 133s calculator/crystal/test_molecule.py s [ 17%] 133s calculator/demon/test_h2o.py s [ 17%] 133s calculator/demon/test_h2o_xas_xes.py s [ 17%] 133s calculator/demonnano/test_h2o.py s [ 17%] 133s calculator/dftb/test_dftb_bandstructure.py s [ 17%] 133s calculator/dftb/test_dftb_relax_bulk.py .s [ 17%] 133s calculator/dftb/test_dftb_relax_dimer.py s [ 17%] 133s calculator/dftb/test_dftb_relax_surface.py s [ 17%] 133s calculator/dftb/test_dipole.py s [ 17%] 133s calculator/dftb/test_xtb_static.py s [ 17%] 133s calculator/dmol/test_Al_dmol.py s [ 17%] 133s calculator/dmol/test_water_dmol.py s [ 17%] 133s calculator/elk/test_elk.py ss [ 17%] 133s calculator/espresso/test_espresso.py ..ssss.. [ 17%] 133s calculator/exciting/test_exciting.py sssss [ 18%] 133s calculator/exciting/test_runner.py ssss. [ 18%] 133s calculator/gamess_us/test_basis_ecp.py s [ 18%] 133s calculator/gamess_us/test_gamess_us.py sssss [ 18%] 133s calculator/gaussian/test_h2of.py s [ 18%] 133s calculator/gaussian/test_optimizer_irc.py ss [ 18%] 133s calculator/gaussian/test_water.py s [ 18%] 133s calculator/gpaw_/test_no_spin_and_spin.py s [ 18%] 133s calculator/gpaw_/test_read_text_output.py . [ 18%] 135s calculator/gpaw_/test_wannier.py ...........................ssssssssssss [ 19%] 135s ssssssssssssssssssssssssssssssssssssssssssssssssssssssss....sss [ 21%] 135s calculator/gromacs/test_gromacs.py .ss [ 21%] 135s calculator/kim/test_cutoff_skin.py s [ 21%] 135s calculator/kim/test_energy_forces_stress.py s [ 21%] 135s calculator/kim/test_modify_parameters.py s [ 21%] 135s calculator/kim/test_multi_neighlist.py s [ 21%] 135s calculator/kim/test_relax.py s [ 21%] 135s calculator/kim/test_single_atom.py s [ 21%] 135s calculator/kim/test_update_coords.py s [ 21%] 135s calculator/kim/test_update_neighbor_parameters.py s [ 21%] 135s calculator/lammps/test_prism.py ........................................ [ 22%] 135s . [ 22%] 135s calculator/lammpslib/test_Pt_stress_cellopt.py s [ 22%] 135s calculator/lammpslib/test_lammpslib_change_cell_bcs.py s [ 22%] 135s calculator/lammpslib/test_lammpslib_neighlist_bug.py s [ 22%] 135s calculator/lammpslib/test_lammpslib_post_changebox_cmds.py s [ 22%] 135s calculator/lammpslib/test_lammpslib_simple.py sssss [ 23%] 135s calculator/lammpslib/test_lammpslib_small_nonperiodic.py s [ 23%] 135s calculator/lammpsrun/test_Ar_minimize.py ss [ 23%] 135s calculator/lammpsrun/test_NaCl_minimize.py s [ 23%] 135s calculator/lammpsrun/test_Pt_md_constraints_multistep.py s [ 23%] 135s calculator/lammpsrun/test_Pt_stress_cellopt.py s [ 23%] 135s calculator/lammpsrun/test_lammps_units.py s [ 23%] 135s calculator/lammpsrun/test_no_data_file_wrap.py s [ 23%] 135s calculator/nwchem/test_nwchem_bands.py s [ 23%] 135s calculator/nwchem/test_nwchem_broken_symmetry.py s [ 23%] 135s calculator/nwchem/test_nwchem_cmdline.py s [ 23%] 135s calculator/nwchem/test_nwchem_eigenvalues.py ss [ 23%] 135s calculator/nwchem/test_nwchem_h3o2m.py s [ 23%] 135s calculator/nwchem/test_nwchem_multitask.py sss [ 23%] 135s calculator/nwchem/test_nwchem_parser.py . [ 23%] 135s calculator/nwchem/test_nwchem_runmany.py ssssssssssssss [ 24%] 135s calculator/nwchem/test_nwchem_spin_symmetry.py s [ 24%] 135s calculator/nwchem/test_nwchem_stress.py s [ 24%] 135s calculator/nwchem/test_nwchem_version.py s [ 24%] 135s calculator/octopus/test_big.py ss [ 24%] 135s calculator/onetep/test_onetep.py s [ 24%] 135s calculator/openmx/test_md.py s [ 24%] 135s calculator/openmx/test_version.py . [ 24%] 135s calculator/plumed/test_plumed.py ssssss [ 24%] 135s calculator/psi4/test_psi4_HF_3_21G.py s [ 24%] 135s calculator/qchem/test_qchem_calculator.py s [ 24%] 135s calculator/siesta/lrtddft/test_siesta_lrtddft.py s [ 24%] 135s calculator/siesta/lrtddft/test_siesta_raman.py s [ 24%] 135s calculator/siesta/test_bandstructure.py s [ 24%] 135s calculator/siesta/test_dos.py s [ 24%] 135s calculator/siesta/test_fdf_io.py s [ 24%] 135s calculator/siesta/test_siesta_read_eigenvalues.py .s [ 24%] 135s calculator/siesta/test_siesta_version.py . [ 24%] 135s calculator/siesta/test_siesta_zmat.py sss [ 24%] 135s calculator/siesta/test_write_input.py sssss [ 24%] 135s calculator/socketio/test_h2_stiffness.py sssss [ 25%] 135s calculator/socketio/test_integration.py ss [ 25%] 135s calculator/socketio/test_ipi_protocol_bfgs.py ss [ 25%] 136s calculator/socketio/test_python_interface.py . [ 25%] 136s calculator/socketio/test_socket_io_mpi_line.py . [ 25%] 136s calculator/test_al.py s [ 25%] 136s calculator/test_bond_polarizability.py ... [ 25%] 136s calculator/test_calculator.py .. [ 25%] 136s calculator/test_ch4_energy.py sssssssssss [ 25%] 136s calculator/test_command.py ............................................. [ 27%] 136s .................. [ 27%] 136s calculator/test_dftd3.py sssssssssssssss [ 27%] 136s calculator/test_eam.py . [ 27%] 136s calculator/test_eam_run.py sssssssss [ 28%] 136s calculator/test_fd.py . [ 28%] 136s calculator/test_gulp.py s [ 28%] 136s calculator/test_gulp_opt.py s [ 28%] 136s calculator/test_h2.py sss [ 28%] 137s calculator/test_h2_bond_force.py sssssss [ 28%] 137s calculator/test_h2morse.py ..... [ 28%] 137s calculator/test_harmonic.py ...... [ 28%] 138s calculator/test_lj.py ....... [ 29%] 138s calculator/test_mopac.py ss [ 29%] 138s calculator/test_mopac_version.py ... [ 29%] 138s calculator/test_morse.py .... [ 29%] 138s calculator/test_orca.py .sssssss [ 29%] 138s calculator/test_orca_qmmm.py s [ 29%] 138s calculator/test_polarizability.py . [ 29%] 138s calculator/test_si_stress.py sssss [ 29%] 139s calculator/test_subprocess_calculator.py ..s. [ 29%] 139s calculator/test_traj.py sssss.sss [ 30%] 139s calculator/test_ts09.py .. [ 30%] 139s calculator/turbomole/test_turbomole_2h2o.py s [ 30%] 139s calculator/turbomole/test_turbomole_H2.py ss [ 30%] 139s calculator/turbomole/test_turbomole_au13.py s [ 30%] 139s calculator/turbomole/test_turbomole_calculator.py .... [ 30%] 139s calculator/turbomole/test_turbomole_h2o.py ss [ 30%] 139s calculator/turbomole/test_turbomole_h3o2m.py s [ 30%] 139s calculator/turbomole/test_turbomole_optimizer.py ss [ 30%] 139s calculator/turbomole/test_turbomole_parameters.py ............. [ 30%] 139s calculator/turbomole/test_turbomole_qmmm.py s [ 30%] 139s calculator/turbomole/test_turbomole_reader.py . [ 31%] 139s calculator/turbomole/test_turbomole_statpt.py s [ 31%] 139s calculator/vasp/test_chgcar.py . [ 31%] 139s calculator/vasp/test_vasp_Al_volrelax.py s [ 31%] 140s calculator/vasp/test_vasp_calculator.py ..................... [ 31%] 140s calculator/vasp/test_vasp_charge.py ssssss [ 31%] 140s calculator/vasp/test_vasp_check_state.py s [ 31%] 140s calculator/vasp/test_vasp_co.py s [ 31%] 140s calculator/vasp/test_vasp_converge.py . [ 31%] 140s calculator/vasp/test_vasp_errors.py . [ 31%] 140s calculator/vasp/test_vasp_freq.py s [ 31%] 140s calculator/vasp/test_vasp_get_dos.py s [ 32%] 140s calculator/vasp/test_vasp_incar.py .......... [ 32%] 140s calculator/vasp/test_vasp_input.py ...................... [ 32%] 140s calculator/vasp/test_vasp_kpoints.py ....ss... [ 33%] 140s calculator/vasp/test_vasp_potcar.py ss [ 33%] 140s calculator/vasp/test_vasp_setup.py sssssss [ 33%] 140s calculator/vasp/test_vasp_wdir.py s [ 33%] 140s calculator/vasp/test_vasp_xml.py s [ 33%] 140s calculator/vasp/test_version.py . [ 33%] 140s cell/test_cell.py ........... [ 33%] 140s cell/test_cell_completion.py . [ 33%] 140s cell/test_cell_conv.py . [ 33%] 140s cell/test_cell_uncompletion.py .. [ 33%] 140s cell/test_conventional_map.py ....................... [ 34%] 140s cell/test_minkowski_reduce.py ....................... [ 35%] 140s cell/test_niggli.py .................... [ 35%] 141s cell/test_niggli_ndim.py ............................ [ 36%] 141s cell/test_niggli_op.py . [ 36%] 141s cell/test_standard_form.py . [ 36%] 141s cell/test_supercell.py .... [ 36%] 141s cli/test_ag.py . [ 36%] 142s cli/test_bandstructure.py . [ 36%] 145s cli/test_bzplot.py ... [ 36%] 145s cli/test_complete.py . [ 36%] 145s cli/test_convert.py . [ 36%] 149s cli/test_diff.py ......... [ 37%] 151s cli/test_dimensionality.py .... [ 37%] 153s cli/test_exec.py ..... [ 37%] 153s cli/test_imports.py . [ 37%] 156s cli/test_info.py ..... [ 37%] 157s cli/test_run.py . [ 37%] 157s constraints/test_CO2linear_Au111.py .. [ 37%] 157s constraints/test_external_force.py . [ 37%] 157s constraints/test_fix_bond_length_mic.py .. [ 37%] 162s constraints/test_fix_symmetry.py ........... [ 38%] 163s constraints/test_fixatoms.py . [ 38%] 165s constraints/test_fixbondlength_CO2_Au111.py .. [ 38%] 165s constraints/test_fixbonds.py . [ 38%] 165s constraints/test_fixcartesian.py .. [ 38%] 165s constraints/test_fixcom.py ... [ 38%] 165s constraints/test_fixedline_fixedplane.py ............................... [ 39%] 165s ............. [ 39%] 165s constraints/test_fixedmode.py . [ 39%] 166s constraints/test_fixinternals.py ....... [ 39%] 166s constraints/test_fixscaled.py .. [ 39%] 166s constraints/test_fixsubsetcom.py ... [ 40%] 166s constraints/test_getindices.py . [ 40%] 166s constraints/test_hookean.py . [ 40%] 166s constraints/test_hookean_pbc.py . [ 40%] 167s constraints/test_mirror.py . [ 40%] 167s constraints/test_negativeindex.py . [ 40%] 167s constraints/test_parameteric_constr.py . [ 40%] 167s constraints/test_repeat_FixAtoms.py . [ 40%] 167s constraints/test_setpos.py . [ 40%] 170s db/test_cli.py ...... [ 40%] 182s db/test_db.py ..sss [ 40%] 182s db/test_db2.py ..xxx. [ 40%] 182s db/test_db_web.py ssss. [ 40%] 182s db/test_jsondb.py . [ 40%] 182s db/test_metadata.py .. [ 40%] 182s db/test_mysql.py ssssss [ 41%] 182s db/test_o2b2o.py . [ 41%] 182s db/test_row.py . [ 41%] 183s db/test_sql_db_ext_tables.py .xxx.xxx.xxx.xxx.xxx.xxx [ 41%] 184s db/test_sqlite.py .... [ 41%] 184s db/test_table.py . [ 42%] 184s db/test_update.py .. [ 42%] 184s dft/test_bandgap.py . [ 42%] 184s dft/test_bee.py ... [ 42%] 184s dft/test_bz.py . [ 42%] 184s dft/test_dos.py . [ 42%] 184s dft/test_hex.py . [ 42%] 184s dft/test_interpolate.py . [ 42%] 184s dft/test_kpt_density_monkhorst_pack.py . [ 42%] 184s dft/test_kpts_size_offsets.py ........ [ 42%] 186s dft/test_min_distance_monkhorst_pack.py ... [ 42%] 186s dft/test_monoclinic.py . [ 42%] 186s emt/test_emt.py . [ 42%] 187s emt/test_emt1.py . [ 42%] 187s emt/test_emt2.py . [ 42%] 187s emt/test_emt_h3o2m.py . [ 42%] 187s emt/test_emt_stress.py . [ 42%] 187s filter/test_cellfilter.py sssssssssssssssssss [ 43%] 187s filter/test_filter.py . [ 43%] 187s filter/test_strain.py ss [ 43%] 187s filter/test_strain_emt.py . [ 43%] 187s fio/aims/test_aims_out.py ......... [ 43%] 187s fio/aims/test_aims_out_chunks.py ....................................... [ 44%] 187s ............................................................... [ 46%] 187s fio/aims/test_geometry.py ........... [ 46%] 187s fio/aims/test_write_control.py ...x.......x [ 47%] 187s fio/castep/test_castep_reader.py ............... [ 47%] 187s fio/castep/test_read_bands.py . [ 47%] 187s fio/exciting/test_exciting.py ssssss [ 47%] 187s fio/octopus/test_input.py .... [ 48%] 187s fio/octopus/test_output.py ...... [ 48%] 187s fio/test_abinit.py ..... [ 48%] 187s fio/test_ace.py .. [ 48%] 188s fio/test_amber.py ... [ 48%] 188s fio/test_animate.py . [ 48%] 188s fio/test_atoms_bytes.py . [ 48%] 188s fio/test_bundletrajectory.py ...... [ 48%] 188s fio/test_castep.py ........... [ 49%] 188s fio/test_cfg.py . [ 49%] 188s fio/test_cif.py ..................... [ 49%] 188s fio/test_cifblock.py ........ [ 49%] 188s fio/test_cjson.py .. [ 49%] 188s fio/test_compression.py ...................... [ 50%] 188s fio/test_cube.py .... [ 50%] 188s fio/test_dftb.py ..... [ 50%] 188s fio/test_dlp.py ... [ 50%] 188s fio/test_dmol.py . [ 50%] 188s fio/test_elk.py ... [ 50%] 188s fio/test_eon_multi_image_read.py . [ 51%] 188s fio/test_eon_readwrite.py ...... [ 51%] 188s fio/test_espresso.py ................. [ 51%] 188s fio/test_espresso_ph.py ..... [ 51%] 188s fio/test_external_io_formats.py .... [ 51%] 189s fio/test_extxyz.py ................................. [ 52%] 189s fio/test_fileobj.py . [ 52%] 189s fio/test_formats.py ... [ 52%] 189s fio/test_gaussian.py .......... [ 53%] 189s fio/test_gaussian_gjf_input.py ........... [ 53%] 189s fio/test_gaussian_out.py .......... [ 53%] 189s fio/test_gen.py ......................... [ 54%] 189s fio/test_gpaw.py . [ 54%] 189s fio/test_gpumd.py .......... [ 54%] 189s fio/test_info.py . [ 54%] 189s fio/test_ioformats.py .sssssssssssssssssssssssssssssssssssssssssssssssss [ 56%] 189s sssssssssssssssssssssssssssssssssssssssssssssssss [ 57%] 189s fio/test_iread_path.py . [ 57%] 189s fio/test_json_arrays.py . [ 57%] 189s fio/test_jsonio.py .. [ 57%] 189s fio/test_jsonio_atoms.py ... [ 57%] 189s fio/test_lammpsdump.py .................. [ 58%] 189s fio/test_magmom.py . [ 58%] 189s fio/test_magres.py .. [ 58%] 189s fio/test_match_magic.py . [ 58%] 189s fio/test_mustem.py .. [ 58%] 189s fio/test_netcdftrajectory.py .... [ 58%] 189s fio/test_nomad.py . [ 58%] 190s fio/test_nwchem.py ..... [ 58%] 190s fio/test_oi.py ......................................................... [ 60%] 190s ......................... [ 61%] 190s fio/test_oldtraj.py . [ 61%] 190s fio/test_onetep.py .... [ 61%] 190s fio/test_openmx.py .. [ 61%] 190s fio/test_opls.py . [ 61%] 190s fio/test_orca.py ..... [ 61%] 190s fio/test_parallel.py . [ 61%] 190s fio/test_pdb_cell_io.py .... [ 61%] 190s fio/test_pdb_extra.py .. [ 61%] 192s fio/test_pickle_bundle_trajectory.py ..x.x.. [ 61%] 192s fio/test_povray.py ss.ss [ 62%] 192s fio/test_prismatic.py .. [ 62%] 192s fio/test_proteindatabank.py .......... [ 62%] 192s fio/test_py.py . [ 62%] 192s fio/test_pycodcif_read.py . [ 62%] 192s fio/test_qbox.py .. [ 62%] 192s fio/test_readwrite_errors.py ........ [ 62%] 192s fio/test_res.py . [ 62%] 192s fio/test_rmc6f.py ............ [ 63%] 192s fio/test_sdf.py .. [ 63%] 192s fio/test_siesta.py ... [ 63%] 192s fio/test_traj_bytesio.py . [ 63%] 192s fio/test_trajectory.py .... [ 63%] 192s fio/test_trajectory_heterogeneous.py . [ 63%] 192s fio/test_turbomole.py . [ 63%] 192s fio/test_ulm.py .... [ 63%] 192s fio/test_ulm_dummy.py . [ 63%] 192s fio/test_v_sim.py . [ 63%] 192s fio/test_vasp_structure.py ........ [ 63%] 192s fio/test_wout.py .. [ 63%] 192s fio/test_xsd_bond.py . [ 63%] 192s fio/test_xsf_spec.py . [ 64%] 192s fio/test_xyz.py ...... [ 64%] 192s fio/vasp/test_incar_writer.py ............. [ 64%] 192s fio/vasp/test_poscar.py . [ 64%] 192s fio/vasp/test_read_vasp_xml.py ....... [ 64%] 192s fio/vasp/test_vasp_out.py ....... [ 64%] 192s fio/vasp/test_vasp_outcar_parsers.py ............................ [ 65%] 192s fio/vasp/test_vasp_poscar.py ............ [ 66%] 192s forcefields/test_acn.py . [ 66%] 192s forcefields/test_aic.py . [ 66%] 192s forcefields/test_combine_mm.py . [ 66%] 197s forcefields/test_combine_mm2.py . [ 66%] 198s forcefields/test_counterions.py . [ 66%] 200s forcefields/test_forceqmmm.py .............. [ 66%] 200s forcefields/test_qmmm.py . [ 66%] 201s forcefields/test_qmmm_acn.py . [ 66%] 202s forcefields/test_rattle.py . [ 66%] 203s forcefields/test_rattle_linear.py . [ 66%] 203s forcefields/test_tip4p.py . [ 66%] 203s forcefields/test_tipnp.py . [ 66%] 203s forcefields/test_utils_ff_vdw.py . [ 66%] 203s ga/test_add_candidates.py . [ 66%] 205s ga/test_basic_example_main_run.py . [ 66%] 208s ga/test_bulk_operators.py . [ 66%] 208s ga/test_chain_operators.py . [ 66%] 208s ga/test_create_database.py . [ 67%] 208s ga/test_cutandsplicepairing.py . [ 67%] 209s ga/test_database_logic.py . [ 67%] 209s ga/test_element_operators.py . [ 67%] 209s ga/test_film_operators.py . [ 67%] 209s ga/test_mutations.py . [ 67%] 209s ga/test_particle_comparators.py . [ 67%] 210s ga/test_particle_mutations.py . [ 67%] 210s ga/test_particle_operators.py . [ 67%] 210s ga/test_slab_operators.py ..... [ 67%] 210s ga/test_standardcomparator.py . [ 67%] 210s geometry/test_analysis.py ... [ 67%] 210s geometry/test_dimensionality.py ......... [ 67%] 210s geometry/test_distance.py . [ 67%] 211s geometry/test_geometry.py . [ 67%] 211s geometry/test_geometry_derivatives.py .... [ 67%] 211s geometry/test_geometry_rdf.py .... [ 68%] 211s gui/test_run.py ssssssssssssssssssssssssssssssssssssssss [ 69%] 211s lammpsdata/test_lammpsdata_read.py . [ 69%] 211s lammpsdata/test_lammpsdata_write.py . [ 69%] 211s lammpsdata/test_read_connectivity.py ...... [ 69%] 211s lammpsdata/test_write_and_read.py .............................. [ 70%] 212s md/test_CO2linear_Au111_langevin.py . [ 70%] 213s md/test_bussi.py .... [ 70%] 214s md/test_ce_curvature.py .. [ 70%] 214s md/test_ce_logging.py . [ 70%] 214s md/test_ce_potentiostat.py .. [ 70%] 214s md/test_fixrotation.py s [ 70%] 214s md/test_idealgas.py . [ 70%] 214s md/test_langevin_asapcompat.py . [ 70%] 214s md/test_langevin_com.py . [ 70%] 217s md/test_langevin_switching.py . [ 70%] 219s md/test_maxwellboltzmann.py .. [ 70%] 219s md/test_md.py .. [ 70%] 220s md/test_md_logger.py .... [ 70%] 221s md/test_md_logger_interval.py ...... [ 71%] 221s md/test_nose_hoover_chain.py ..ss [ 71%] 221s md/test_nvt_npt.py sss [ 71%] 221s md/test_phonon_md_init.py s [ 71%] 221s md/test_rng.py .. [ 71%] 221s md/test_velocity_distribution.py ... [ 71%] 221s md/test_verlet_thermostats_asap.py s [ 71%] 221s neb/test_COCu111.py . [ 71%] 222s neb/test_COCu111_2.py . [ 71%] 222s neb/test_autoneb.py s. [ 71%] 231s neb/test_dynamic_neb.py . [ 71%] 231s neb/test_idpp.py . [ 71%] 231s neb/test_interpolate_images.py ..... [ 71%] 233s neb/test_neb_tr.py . [ 71%] 242s neb/test_precon_neb.py ............ [ 72%] 242s neb/test_shared_calculator_neb.py ....... [ 72%] 243s neighbor/test_neighbor.py ................................ [ 73%] 243s neighbor/test_neighbor_initialization.py . [ 73%] 246s neighbor/test_neighbor_kernel.py . [ 73%] 246s optimize/test_bad_restart.py . [ 73%] 247s optimize/test_cellawarebfgs.py ...... [ 73%] 248s optimize/test_climb_fix_internals.py ... [ 73%] 248s optimize/test_fire.py . [ 73%] 248s optimize/test_fire2.py . [ 73%] 248s optimize/test_maxstep.py . [ 73%] 248s optimize/test_minimahop.py s [ 73%] 248s optimize/test_nsteps.py ... [ 73%] 248s optimize/test_optimize_stepwise.py .. [ 73%] 250s optimize/test_optimizer_restart.py ..x [ 73%] 252s optimize/test_optimizers.py .......................................... [ 75%] 252s optimize/test_replay.py . [ 75%] 253s precon/test_amin.py . [ 75%] 264s precon/test_ff_and_precon_c60.py . [ 75%] 264s precon/test_lbfgs.py . [ 75%] 266s precon/test_precon_assembly.py .................................... [ 76%] 266s precon/test_smallcell.py .. [ 76%] 266s precon/test_unitcellfilter.py .. [ 76%] 270s spacegroup/test_minerals.py ................................ [ 77%] 271s spacegroup/test_space_group_data.py ......... [ 77%] 271s spacegroup/test_spacegroup.py .... [ 77%] 271s spacegroup/test_spacegroup_crystal.py .. [ 77%] 271s spacegroup/test_spacegroup_utils.py .................................... [ 78%] 271s ................ [ 79%] 271s spectrum/test_doscollection.py ......................................... [ 80%] 271s .. [ 80%] 272s spectrum/test_dosdata.py ............................................... [ 81%] 272s ..... [ 81%] 272s standardization/test_properties.py . [ 81%] 272s test_bader.py . [ 81%] 272s test_bandpath_kpts_axis.py . [ 81%] 274s test_basin.py . [ 81%] 274s test_calc_outputs_big.py ... [ 82%] 274s test_calc_properties.py .......................................... [ 83%] 274s test_calculator_equal.py ............................................... [ 84%] 274s ........................................................................ [ 86%] 274s ........................................................................ [ 88%] 274s ............................................. [ 89%] 274s test_calculator_label.py . [ 90%] 274s test_checkpoint.py .. [ 90%] 275s test_cluster.py ........................ [ 90%] 275s test_cutoffs.py . [ 90%] 275s test_dependency_list.py .. [ 90%] 275s test_diffusion_coefficient.py .. [ 90%] 275s test_dimer.py . [ 90%] 275s test_dimer_method.py . [ 90%] 275s test_distmom.py . [ 90%] 276s test_doctests.py ................ [ 91%] 277s test_dos.py . [ 91%] 277s test_eos.py . [ 91%] 277s test_example.py . [ 91%] 278s test_external_viewer.py ..ss.......... [ 91%] 278s test_filecache.py ................. [ 92%] 278s test_forcecurve.py . [ 92%] 278s test_formula.py .................. [ 92%] 278s test_grid_slice.py . [ 92%] 278s test_gromacs.py .. [ 93%] 279s test_hcp.py . [ 93%] 279s test_imports.py . [ 93%] 279s test_isotopes.py . [ 93%] 279s test_issue276.py . [ 93%] 279s test_kpts.py . [ 93%] 279s test_kpts2kpts.py ............................. [ 93%] 279s test_lattice_lindep.py ........ [ 94%] 279s test_linesearch_maxstep.py .... [ 94%] 279s test_lock.py .. [ 94%] 279s test_loggingcalc.py . [ 94%] 280s test_makebandpath.py . [ 94%] 280s test_matplotlib_plot.py ..... [ 94%] 280s test_minimum_image_convention.py ... [ 94%] 280s test_mixingcalc.py . [ 94%] 281s test_mpi.py .s [ 94%] 281s test_noncollinear.py . [ 94%] 281s test_nwchem_writer.py ... [ 94%] 281s test_parsemath.py . [ 94%] 281s test_pathlib_support.py . [ 94%] 281s test_phasediagram.py ... [ 95%] 282s test_phonons.py ....... [ 95%] 282s test_potential_energies.py . [ 95%] 282s test_pourbaix.py ...... [ 95%] 282s test_properties.py . [ 95%] 282s test_ptable.py . [ 95%] 282s test_pubchem.py . [ 95%] 282s test_quaternions.py ......... [ 95%] 282s test_root_surf.py . [ 95%] 282s test_s22.py . [ 95%] 282s test_singlepoint_dft_calc.py . [ 95%] 282s test_singlepointcalc.py . [ 95%] 282s test_springcalc.py . [ 95%] 283s test_stm.py . [ 95%] 283s test_stress.py .. [ 95%] 286s test_structure_comparator.py .................... [ 96%] 286s test_symbols.py ........... [ 96%] 286s test_thermochemistry.py .........s..... [ 97%] 286s test_things.py . [ 97%] 286s test_timing.py . [ 97%] 286s test_units.py .. [ 97%] 286s test_util.py ......................... [ 98%] 286s test_versionnumber.py . [ 98%] 286s test_x3d.py s [ 98%] 286s test_xrdebye.py ... [ 98%] 286s test_xwopen.py ... [ 98%] 286s test_zmatrix.py .... [ 98%] 288s transport/test_transport_calculator.py . [ 98%] 288s vibrations/test_albrecht.py .... [ 98%] 288s vibrations/test_bond_polarizability_raman.py ... [ 98%] 288s vibrations/test_combine.py . [ 98%] 289s vibrations/test_folding.py . [ 98%] 289s vibrations/test_franck_condon.py ... [ 98%] 289s vibrations/test_pickle2json.py . [ 98%] 289s vibrations/test_placzek.py .... [ 98%] 289s vibrations/test_profeta_albrecht.py . [ 98%] 289s vibrations/test_vib.py ................................... [ 99%] 290s vibrations/test_vibrations_example.py . [100%] 290s 290s =============================== warnings summary =============================== 290s :488 290s :488: RuntimeWarning: numpy.ndarray size changed, may indicate binary incompatibility. Expected 16 from C header, got 96 from PyObject 290s 290s calculator/turbomole/test_turbomole_parameters.py::test_tm_parameters_update_invalid_name 290s /usr/lib/python3/dist-packages/ase/calculators/turbomole/parameters.py:449: ResourceWarning: unclosed file <_io.FileIO name='/dev/null' mode='wb' closefd=True> 290s if k in list(self.parameter_spec[p].keys()): 290s Enable tracemalloc to get traceback where the object was allocated. 290s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 290s 290s constraints/test_fix_symmetry.py::test_fail_md 290s /usr/lib/python3/dist-packages/_pytest/python.py:157: ResourceWarning: unclosed file <_io.TextIOWrapper name='/dev/null' mode='a' encoding='utf-8'> 290s result = testfunction(**testargs) 290s Enable tracemalloc to get traceback where the object was allocated. 290s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 290s 290s db/test_sql_db_ext_tables.py::test_create_and_delete_ext_tab[db] 290s /usr/lib/python3.13/pathlib/_local.py:277: ResourceWarning: unclosed database in 290s @property 290s Enable tracemalloc to get traceback where the object was allocated. 290s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 290s 290s db/test_sql_db_ext_tables.py::test_create_and_delete_ext_tab[db] 290s /usr/lib/python3.13/pathlib/_local.py:277: ResourceWarning: unclosed database in 290s @property 290s Enable tracemalloc to get traceback where the object was allocated. 290s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 290s 290s fio/test_oi.py::test_ioformat[eps] 290s :784: ResourceWarning: unclosed database in 290s Enable tracemalloc to get traceback where the object was allocated. 290s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 290s 290s fio/test_oi.py::test_ioformat[eps] 290s :784: ResourceWarning: unclosed database in 290s Enable tracemalloc to get traceback where the object was allocated. 290s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 290s 290s ga/test_basic_example_main_run.py::test_basic_example_main_run[0] 290s /usr/lib/python3/dist-packages/ase/db/sqlite.py:522: ResourceWarning: unclosed file <_io.FileIO name='/dev/null' mode='wb' closefd=True> 290s def _old2new(self, values): 290s Enable tracemalloc to get traceback where the object was allocated. 290s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 290s 290s ga/test_basic_example_main_run.py::test_basic_example_main_run[0] 290s /usr/lib/python3/dist-packages/ase/db/sqlite.py:522: ResourceWarning: unclosed database in 290s def _old2new(self, values): 290s Enable tracemalloc to get traceback where the object was allocated. 290s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 290s 290s ga/test_basic_example_main_run.py::test_basic_example_main_run[0] 290s /usr/lib/python3/dist-packages/ase/db/sqlite.py:522: ResourceWarning: unclosed database in 290s def _old2new(self, values): 290s Enable tracemalloc to get traceback where the object was allocated. 290s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 290s 290s ga/test_basic_example_main_run.py::test_basic_example_main_run[0] 290s /usr/lib/python3/dist-packages/ase/db/sqlite.py:522: ResourceWarning: unclosed database in 290s def _old2new(self, values): 290s Enable tracemalloc to get traceback where the object was allocated. 290s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 290s 290s ga/test_basic_example_main_run.py::test_basic_example_main_run[0] 290s /usr/lib/python3/dist-packages/ase/db/sqlite.py:522: ResourceWarning: unclosed database in 290s def _old2new(self, values): 290s Enable tracemalloc to get traceback where the object was allocated. 290s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 290s 290s ga/test_basic_example_main_run.py::test_basic_example_main_run[0] 290s /usr/lib/python3/dist-packages/ase/db/sqlite.py:522: ResourceWarning: unclosed database in 290s def _old2new(self, values): 290s Enable tracemalloc to get traceback where the object was allocated. 290s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 290s 290s ga/test_basic_example_main_run.py::test_basic_example_main_run[0] 290s /usr/lib/python3/dist-packages/ase/db/sqlite.py:522: ResourceWarning: unclosed database in 290s def _old2new(self, values): 290s Enable tracemalloc to get traceback where the object was allocated. 290s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 290s 290s ga/test_basic_example_main_run.py::test_basic_example_main_run[0] 290s /usr/lib/python3/dist-packages/ase/db/sqlite.py:522: ResourceWarning: unclosed database in 290s def _old2new(self, values): 290s Enable tracemalloc to get traceback where the object was allocated. 290s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 290s 290s geometry/test_analysis.py::test_analysis 290s /usr/lib/python3/dist-packages/scipy/sparse/_sputils.py:457: ResourceWarning: unclosed database in 290s new_shape = tuple(operator.index(arg) for arg in args) 290s Enable tracemalloc to get traceback where the object was allocated. 290s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 290s 290s md/test_bussi.py::test_bussi 290s /usr/lib/python3/dist-packages/ase/test/md/test_bussi.py:15: ResourceWarning: unclosed file <_io.TextIOWrapper name='/dev/null' mode='a' encoding='utf-8'> 290s with pytest.raises(ValueError): 290s Enable tracemalloc to get traceback where the object was allocated. 290s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 290s 290s md/test_ce_logging.py::test_logging 290s /usr/lib/python3/dist-packages/ase/neighborlist.py:1012: ResourceWarning: unclosed file <_io.TextIOWrapper name='/dev/null' mode='w' encoding='utf-8'> 290s displacements2 = [[] for a in range(natoms)] 290s Enable tracemalloc to get traceback where the object was allocated. 290s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 290s 290s spectrum/test_doscollection.py::TestDOSCollection::test_plot[1] 290s /usr/lib/python3/dist-packages/matplotlib/_api/__init__.py:126: ResourceWarning: unclosed file <_io.BufferedWriter name='fragile_BFGSLineSearch.traj'> 290s if val not in values: 290s Enable tracemalloc to get traceback where the object was allocated. 290s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 290s 290s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 290s ==== 2964 passed, 532 skipped, 26 xfailed, 19 warnings in 170.82s (0:02:50) ==== 291s :0: DeprecationWarning: builtin type swigvarlink has no __module__ attribute 292s autopkgtest [20:52:46]: test command1: -----------------------] 292s autopkgtest [20:52:46]: test command1: - - - - - - - - - - results - - - - - - - - - - 292s command1 PASS 293s autopkgtest [20:52:47]: @@@@@@@@@@@@@@@@@@@@ summary 293s command1 PASS