0s autopkgtest [12:19:25]: starting date and time: 2025-11-01 12:19:25+0000
  0s autopkgtest [12:19:25]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op
  0s autopkgtest [12:19:25]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.j9ec5xmy/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:scipy --apt-upgrade presto --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=scipy/1.16.3-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-arm64-12.secgroup --name adt-resolute-arm64-presto-20251101-121925-juju-7f2275-prod-proposed-migration-environment-15-adca0a2b-e754-4e62-87d6-ebb2daf56388 --image adt/ubuntu-resolute-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/
  3s Creating nova instance adt-resolute-arm64-presto-20251101-121925-juju-7f2275-prod-proposed-migration-environment-15-adca0a2b-e754-4e62-87d6-ebb2daf56388 from image adt/ubuntu-resolute-arm64-server-20251101.img (UUID 895f8d05-65a0-4cf8-81a2-1a04d79b538c)...
 84s autopkgtest [12:20:49]: testbed dpkg architecture: arm64
 84s autopkgtest [12:20:49]: testbed apt version: 3.1.11
 84s autopkgtest [12:20:49]: @@@@@@@@@@@@@@@@@@@@ test bed setup
 84s autopkgtest [12:20:49]: testbed release detected to be: None
 85s autopkgtest [12:20:50]: updating testbed package index (apt update)
 86s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [87.8 kB]
 86s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease
 86s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease
 86s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease
 87s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [138 kB]
 87s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [49.4 kB]
 87s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [9848 B]
 87s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [2242 kB]
 87s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 Packages [206 kB]
 87s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 c-n-f Metadata [4948 B]
 87s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 Packages [107 kB]
 87s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 c-n-f Metadata [324 B]
 87s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 Packages [1619 kB]
 87s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 c-n-f Metadata [48.3 kB]
 87s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 Packages [34.8 kB]
 87s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 c-n-f Metadata [1700 B]
 90s Fetched 4550 kB in 2s (2410 kB/s)
 91s Reading package lists...
 92s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease
 92s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease
 93s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease
 93s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease
 94s Reading package lists...
 94s Reading package lists...
 95s Building dependency tree...
 95s Reading state information...
 95s Calculating upgrade...
 96s The following packages will be upgraded:
 96s   gcc-15-base libatomic1 libgcc-s1 libstdc++6 publicsuffix
 96s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 96s Need to get 1027 kB of archives.
 96s After this operation, 14.3 kB of additional disk space will be used.
 96s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 libatomic1 arm64 15.2.0-7ubuntu1 [11.2 kB]
 96s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 libstdc++6 arm64 15.2.0-7ubuntu1 [760 kB]
 97s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 gcc-15-base arm64 15.2.0-7ubuntu1 [58.4 kB]
 97s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 libgcc-s1 arm64 15.2.0-7ubuntu1 [61.1 kB]
 97s Get:5 http://ftpmaster.internal/ubuntu resolute/main arm64 publicsuffix all 20251016.1743-0.1 [136 kB]
 98s dpkg-preconfigure: unable to re-open stdin: No such file or directory
 98s Fetched 1027 kB in 1s (1321 kB/s)
 99s (Reading database ... 
(Reading database ... 5%
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(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
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(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 83460 files and directories currently installed.)
 99s Preparing to unpack .../libatomic1_15.2.0-7ubuntu1_arm64.deb ...
 99s Unpacking libatomic1:arm64 (15.2.0-7ubuntu1) over (15.2.0-5ubuntu1) ...
 99s Preparing to unpack .../libstdc++6_15.2.0-7ubuntu1_arm64.deb ...
 99s Unpacking libstdc++6:arm64 (15.2.0-7ubuntu1) over (15.2.0-5ubuntu1) ...
 99s Preparing to unpack .../gcc-15-base_15.2.0-7ubuntu1_arm64.deb ...
 99s Unpacking gcc-15-base:arm64 (15.2.0-7ubuntu1) over (15.2.0-5ubuntu1) ...
100s Setting up gcc-15-base:arm64 (15.2.0-7ubuntu1) ...
100s (Reading database ... 
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(Reading database ... 45%
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(Reading database ... 55%
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(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 83460 files and directories currently installed.)
100s Preparing to unpack .../libgcc-s1_15.2.0-7ubuntu1_arm64.deb ...
100s Unpacking libgcc-s1:arm64 (15.2.0-7ubuntu1) over (15.2.0-5ubuntu1) ...
100s Setting up libgcc-s1:arm64 (15.2.0-7ubuntu1) ...
100s (Reading database ... 
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(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 83460 files and directories currently installed.)
100s Preparing to unpack .../publicsuffix_20251016.1743-0.1_all.deb ...
100s Unpacking publicsuffix (20251016.1743-0.1) over (20250328.1952-0.1) ...
101s Setting up libatomic1:arm64 (15.2.0-7ubuntu1) ...
101s Setting up publicsuffix (20251016.1743-0.1) ...
101s Setting up libstdc++6:arm64 (15.2.0-7ubuntu1) ...
101s Processing triggers for libc-bin (2.42-0ubuntu3) ...
101s autopkgtest [12:21:06]: upgrading testbed (apt dist-upgrade and autopurge)
101s Reading package lists...
102s Building dependency tree...
102s Reading state information...
102s Calculating upgrade...
103s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
103s Reading package lists...
104s Building dependency tree...
104s Reading state information...
104s Solving dependencies...
104s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
108s autopkgtest [12:21:13]: testbed running kernel: Linux 6.17.0-5-generic #5-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 22 09:50:31 UTC 2025
108s autopkgtest [12:21:13]: @@@@@@@@@@@@@@@@@@@@ apt-source presto
111s Get:1 http://ftpmaster.internal/ubuntu resolute/universe presto 0.7.5-1 (dsc) [2259 B]
111s Get:2 http://ftpmaster.internal/ubuntu resolute/universe presto 0.7.5-1 (tar) [93.2 kB]
111s Get:3 http://ftpmaster.internal/ubuntu resolute/universe presto 0.7.5-1 (diff) [21.9 kB]
111s gpgv: Signature made Sun Aug 17 18:16:35 2025 UTC
111s gpgv:                using RSA key DF3E2E424A7E279C2E4B023AB9C29AEEB2F450A7
111s gpgv:                issuer "moeller@debian.org"
111s gpgv: Can't check signature: No public key
111s dpkg-source: warning: cannot verify inline signature for ./presto_0.7.5-1.dsc: no acceptable signature found
111s autopkgtest [12:21:16]: testing package presto version 0.7.5-1
112s autopkgtest [12:21:17]: build not needed
112s autopkgtest [12:21:17]: test pybuild-autopkgtest: preparing testbed
113s Reading package lists...
113s Building dependency tree...
113s Reading state information...
113s Solving dependencies...
114s The following NEW packages will be installed:
114s   autoconf automake autopoint autotools-dev build-essential cd-hit cpp cpp-15
114s   cpp-15-aarch64-linux-gnu cpp-aarch64-linux-gnu debhelper debugedit
114s   dh-autoreconf dh-python dh-strip-nondeterminism dwz fontconfig-config
114s   fonts-urw-base35 g++ g++-15 g++-15-aarch64-linux-gnu g++-aarch64-linux-gnu
114s   gcc gcc-15 gcc-15-aarch64-linux-gnu gcc-aarch64-linux-gnu gettext
114s   intltool-debian libarchive-zip-perl libasan8 libblas3 libcairo2 libcc1-0
114s   libdebhelper-perl libdeflate0 libfile-stripnondeterminism-perl
114s   libfontconfig1 libfontenc1 libgcc-15-dev libgfortran5 libgomp1
114s   libgraphite2-3 libharfbuzz0b libhwasan0 libimagequant0 libisl23 libitm1
114s   libjbig0 libjpeg-turbo8 libjpeg8 liblapack3 liblcms2-2 liblerc4 liblsan0
114s   libmbedcrypto16 libmbedtls21 libmbedx509-7 libmpc3 libncbi-vdb3 libopenjp2-7
114s   libpixman-1-0 libqhull-r8.0 libraqm0 libsharpyuv0 libstdc++-15-dev libtiff6
114s   libtool libtsan2 libubsan1 libwebp7 libwebpdemux2 libwebpmux3 libxcb-render0
114s   libxcb-shm0 libxrender1 m4 ncbi-blast+ ncbi-data ncbi-vdb-data po-debconf
114s   presto pybuild-plugin-autopkgtest python3-all python3-biopython
114s   python3-cairo python3-charset-normalizer python3-dateutil python3-decorator
114s   python3-freetype python3-numpy python3-numpy-dev python3-packaging
114s   python3-pandas python3-pandas-lib python3-pil python3-presto python3-pytz
114s   python3-reportlab python3-rlpycairo python3-scipy sgml-base vsearch
114s   w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core
114s 0 upgraded, 107 newly installed, 0 to remove and 0 not upgraded.
114s Need to get 145 MB of archives.
114s After this operation, 587 MB of additional disk space will be used.
114s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-numpy-dev arm64 1:2.2.4+ds-1ubuntu1 [146 kB]
115s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 libblas3 arm64 3.12.1-6build1 [186 kB]
115s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 libgfortran5 arm64 15.2.0-7ubuntu1 [450 kB]
115s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 liblapack3 arm64 3.12.1-6build1 [2340 kB]
115s Get:5 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-numpy arm64 1:2.2.4+ds-1ubuntu1 [3986 kB]
115s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 m4 arm64 1.4.20-2 [213 kB]
115s Get:7 http://ftpmaster.internal/ubuntu resolute/main arm64 autoconf all 2.72-3.1ubuntu1 [384 kB]
115s Get:8 http://ftpmaster.internal/ubuntu resolute/main arm64 autotools-dev all 20240727.1 [43.4 kB]
115s Get:9 http://ftpmaster.internal/ubuntu resolute/main arm64 automake all 1:1.18.1-2 [581 kB]
115s Get:10 http://ftpmaster.internal/ubuntu resolute/main arm64 autopoint all 0.23.1-2build2 [619 kB]
116s Get:11 http://ftpmaster.internal/ubuntu resolute/main arm64 libisl23 arm64 0.27-1 [676 kB]
116s Get:12 http://ftpmaster.internal/ubuntu resolute/main arm64 libmpc3 arm64 1.3.1-1build3 [58.9 kB]
116s Get:13 http://ftpmaster.internal/ubuntu resolute/main arm64 cpp-15-aarch64-linux-gnu arm64 15.2.0-7ubuntu1 [11.7 MB]
116s Get:14 http://ftpmaster.internal/ubuntu resolute/main arm64 cpp-15 arm64 15.2.0-7ubuntu1 [1026 B]
116s Get:15 http://ftpmaster.internal/ubuntu resolute/main arm64 cpp-aarch64-linux-gnu arm64 4:15.2.0-4ubuntu1 [5736 B]
116s Get:16 http://ftpmaster.internal/ubuntu resolute/main arm64 cpp arm64 4:15.2.0-4ubuntu1 [22.4 kB]
116s Get:17 http://ftpmaster.internal/ubuntu resolute/main arm64 libcc1-0 arm64 15.2.0-7ubuntu1 [49.0 kB]
116s Get:18 http://ftpmaster.internal/ubuntu resolute/main arm64 libgomp1 arm64 15.2.0-7ubuntu1 [147 kB]
116s Get:19 http://ftpmaster.internal/ubuntu resolute/main arm64 libitm1 arm64 15.2.0-7ubuntu1 [27.9 kB]
116s Get:20 http://ftpmaster.internal/ubuntu resolute/main arm64 libasan8 arm64 15.2.0-7ubuntu1 [2923 kB]
116s Get:21 http://ftpmaster.internal/ubuntu resolute/main arm64 liblsan0 arm64 15.2.0-7ubuntu1 [1316 kB]
116s Get:22 http://ftpmaster.internal/ubuntu resolute/main arm64 libtsan2 arm64 15.2.0-7ubuntu1 [2689 kB]
116s Get:23 http://ftpmaster.internal/ubuntu resolute/main arm64 libubsan1 arm64 15.2.0-7ubuntu1 [1176 kB]
116s Get:24 http://ftpmaster.internal/ubuntu resolute/main arm64 libhwasan0 arm64 15.2.0-7ubuntu1 [1638 kB]
116s Get:25 http://ftpmaster.internal/ubuntu resolute/main arm64 libgcc-15-dev arm64 15.2.0-7ubuntu1 [2600 kB]
117s Get:26 http://ftpmaster.internal/ubuntu resolute/main arm64 gcc-15-aarch64-linux-gnu arm64 15.2.0-7ubuntu1 [23.1 MB]
118s Get:27 http://ftpmaster.internal/ubuntu resolute/main arm64 gcc-15 arm64 15.2.0-7ubuntu1 [513 kB]
118s Get:28 http://ftpmaster.internal/ubuntu resolute/main arm64 gcc-aarch64-linux-gnu arm64 4:15.2.0-4ubuntu1 [1206 B]
118s Get:29 http://ftpmaster.internal/ubuntu resolute/main arm64 gcc arm64 4:15.2.0-4ubuntu1 [5016 B]
118s Get:30 http://ftpmaster.internal/ubuntu resolute/main arm64 libstdc++-15-dev arm64 15.2.0-7ubuntu1 [2546 kB]
118s Get:31 http://ftpmaster.internal/ubuntu resolute/main arm64 g++-15-aarch64-linux-gnu arm64 15.2.0-7ubuntu1 [13.2 MB]
118s Get:32 http://ftpmaster.internal/ubuntu resolute/main arm64 g++-15 arm64 15.2.0-7ubuntu1 [23.7 kB]
118s Get:33 http://ftpmaster.internal/ubuntu resolute/main arm64 g++-aarch64-linux-gnu arm64 4:15.2.0-4ubuntu1 [956 B]
118s Get:34 http://ftpmaster.internal/ubuntu resolute/main arm64 g++ arm64 4:15.2.0-4ubuntu1 [1080 B]
118s Get:35 http://ftpmaster.internal/ubuntu resolute/main arm64 build-essential arm64 12.12ubuntu1 [5082 B]
118s Get:36 http://ftpmaster.internal/ubuntu resolute/universe arm64 cd-hit arm64 4.8.1-4 [522 kB]
118s Get:37 http://ftpmaster.internal/ubuntu resolute/main arm64 libdebhelper-perl all 13.24.2ubuntu1 [95.7 kB]
118s Get:38 http://ftpmaster.internal/ubuntu resolute/main arm64 libtool all 2.5.4-4build1 [169 kB]
118s Get:39 http://ftpmaster.internal/ubuntu resolute/main arm64 dh-autoreconf all 21 [12.5 kB]
118s Get:40 http://ftpmaster.internal/ubuntu resolute/main arm64 libarchive-zip-perl all 1.68-1 [90.2 kB]
118s Get:41 http://ftpmaster.internal/ubuntu resolute/main arm64 libfile-stripnondeterminism-perl all 1.15.0-1 [20.5 kB]
118s Get:42 http://ftpmaster.internal/ubuntu resolute/main arm64 dh-strip-nondeterminism all 1.15.0-1 [5090 B]
118s Get:43 http://ftpmaster.internal/ubuntu resolute/main arm64 debugedit arm64 1:5.2-3 [49.1 kB]
118s Get:44 http://ftpmaster.internal/ubuntu resolute/main arm64 dwz arm64 0.16-2 [113 kB]
118s Get:45 http://ftpmaster.internal/ubuntu resolute/main arm64 gettext arm64 0.23.1-2build2 [1026 kB]
118s Get:46 http://ftpmaster.internal/ubuntu resolute/main arm64 intltool-debian all 0.35.0+20060710.6 [23.2 kB]
118s Get:47 http://ftpmaster.internal/ubuntu resolute/main arm64 po-debconf all 1.0.21+nmu1 [233 kB]
118s Get:48 http://ftpmaster.internal/ubuntu resolute/main arm64 debhelper all 13.24.2ubuntu1 [896 kB]
118s Get:49 http://ftpmaster.internal/ubuntu resolute/universe arm64 dh-python all 6.20250414 [119 kB]
118s Get:50 http://ftpmaster.internal/ubuntu resolute/main arm64 libfontenc1 arm64 1:1.1.8-1build1 [13.9 kB]
118s Get:51 http://ftpmaster.internal/ubuntu resolute/main arm64 x11-common all 1:7.7+24ubuntu1 [22.4 kB]
118s Get:52 http://ftpmaster.internal/ubuntu resolute/main arm64 xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB]
118s Get:53 http://ftpmaster.internal/ubuntu resolute/main arm64 xfonts-utils arm64 1:7.7+7 [95.6 kB]
118s Get:54 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-urw-base35 all 20200910-8 [11.0 MB]
119s Get:55 http://ftpmaster.internal/ubuntu resolute/main arm64 fontconfig-config arm64 2.15.0-2.3ubuntu1 [38.1 kB]
119s Get:56 http://ftpmaster.internal/ubuntu resolute/main arm64 libfontconfig1 arm64 2.15.0-2.3ubuntu1 [144 kB]
119s Get:57 http://ftpmaster.internal/ubuntu resolute/main arm64 libpixman-1-0 arm64 0.46.4-1 [204 kB]
119s Get:58 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-render0 arm64 1.17.0-2build1 [18.1 kB]
119s Get:59 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-shm0 arm64 1.17.0-2build1 [6234 B]
119s Get:60 http://ftpmaster.internal/ubuntu resolute/main arm64 libxrender1 arm64 1:0.9.12-1 [19.5 kB]
119s Get:61 http://ftpmaster.internal/ubuntu resolute/main arm64 libcairo2 arm64 1.18.4-1build1 [592 kB]
119s Get:62 http://ftpmaster.internal/ubuntu resolute/main arm64 libdeflate0 arm64 1.23-2 [46.4 kB]
119s Get:63 http://ftpmaster.internal/ubuntu resolute/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB]
119s Get:64 http://ftpmaster.internal/ubuntu resolute/main arm64 libharfbuzz0b arm64 12.1.0-1 [523 kB]
119s Get:65 http://ftpmaster.internal/ubuntu resolute/main arm64 libimagequant0 arm64 2.18.0-1build1 [37.1 kB]
119s Get:66 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg-turbo8 arm64 2.1.5-4ubuntu2 [165 kB]
119s Get:67 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B]
119s Get:68 http://ftpmaster.internal/ubuntu resolute/main arm64 liblcms2-2 arm64 2.16-2 [170 kB]
119s Get:69 http://ftpmaster.internal/ubuntu resolute/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB]
119s Get:70 http://ftpmaster.internal/ubuntu resolute/universe arm64 libmbedcrypto16 arm64 3.6.2-3ubuntu1 [258 kB]
119s Get:71 http://ftpmaster.internal/ubuntu resolute/universe arm64 libmbedx509-7 arm64 3.6.2-3ubuntu1 [35.7 kB]
119s Get:72 http://ftpmaster.internal/ubuntu resolute/universe arm64 libmbedtls21 arm64 3.6.2-3ubuntu1 [122 kB]
119s Get:73 http://ftpmaster.internal/ubuntu resolute/universe arm64 ncbi-vdb-data all 3.2.1+dfsg-2 [81.3 kB]
119s Get:74 http://ftpmaster.internal/ubuntu resolute/universe arm64 libncbi-vdb3 arm64 3.2.1+dfsg-2 [1259 kB]
119s Get:75 http://ftpmaster.internal/ubuntu resolute/universe arm64 libqhull-r8.0 arm64 2020.2-6build1 [189 kB]
119s Get:76 http://ftpmaster.internal/ubuntu resolute/main arm64 libraqm0 arm64 0.10.3-1 [15.0 kB]
119s Get:77 http://ftpmaster.internal/ubuntu resolute/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB]
119s Get:78 http://ftpmaster.internal/ubuntu resolute/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB]
119s Get:79 http://ftpmaster.internal/ubuntu resolute/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB]
119s Get:80 http://ftpmaster.internal/ubuntu resolute/main arm64 libtiff6 arm64 4.7.0-3ubuntu3 [196 kB]
119s Get:81 http://ftpmaster.internal/ubuntu resolute/main arm64 libwebpdemux2 arm64 1.5.0-0.1 [12.5 kB]
119s Get:82 http://ftpmaster.internal/ubuntu resolute/main arm64 libwebpmux3 arm64 1.5.0-0.1 [25.4 kB]
119s Get:83 http://ftpmaster.internal/ubuntu resolute/universe arm64 ncbi-data all 6.1.20170106+dfsg2-6 [3969 kB]
119s Get:84 http://ftpmaster.internal/ubuntu resolute/universe arm64 ncbi-blast+ arm64 2.16.0+ds-7 [15.4 MB]
119s Get:85 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-charset-normalizer arm64 3.4.2-1 [125 kB]
119s Get:86 http://ftpmaster.internal/ubuntu resolute/main arm64 libopenjp2-7 arm64 2.5.3-2.1 [179 kB]
119s Get:87 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-pil arm64 11.3.0-1ubuntu2 [492 kB]
119s Get:88 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-cairo arm64 1.27.0-2build1 [141 kB]
119s Get:89 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-freetype all 2.5.1-2 [92.2 kB]
119s Get:90 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-rlpycairo all 0.3.0-4 [9332 B]
119s Get:91 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-reportlab all 4.4.4-2 [1147 kB]
119s Get:92 http://ftpmaster.internal/ubuntu resolute/main arm64 sgml-base all 1.31+nmu1 [11.0 kB]
119s Get:93 http://ftpmaster.internal/ubuntu resolute/main arm64 xml-core all 0.19 [20.3 kB]
119s Get:94 http://ftpmaster.internal/ubuntu resolute/universe arm64 w3c-sgml-lib all 1.3-3 [280 kB]
119s Get:95 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-biopython arm64 1.85+dfsg-4 [1710 kB]
119s Get:96 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-packaging all 25.0-1 [52.8 kB]
119s Get:97 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-dateutil all 2.9.0-4 [80.3 kB]
119s Get:98 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-pytz all 2025.2-4 [32.3 kB]
119s Get:99 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pandas-lib arm64 2.3.3+dfsg-1ubuntu1 [6979 kB]
120s Get:100 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pandas all 2.3.3+dfsg-1ubuntu1 [2948 kB]
120s Get:101 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-decorator all 5.2.1-2 [28.1 kB]
120s Get:102 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 python3-scipy arm64 1.16.3-1 [17.4 MB]
121s Get:103 http://ftpmaster.internal/ubuntu resolute/universe arm64 vsearch arm64 2.30.0-1 [436 kB]
121s Get:104 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-presto arm64 0.7.5-1 [81.3 kB]
121s Get:105 http://ftpmaster.internal/ubuntu resolute/universe arm64 presto all 0.7.5-1 [66.2 kB]
121s Get:106 http://ftpmaster.internal/ubuntu resolute/universe arm64 pybuild-plugin-autopkgtest all 6.20250414 [1746 B]
121s Get:107 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-all arm64 3.13.7-1 [884 B]
122s Fetched 145 MB in 7s (20.6 MB/s)
122s Selecting previously unselected package python3-numpy-dev:arm64.
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122s Preparing to unpack .../000-python3-numpy-dev_1%3a2.2.4+ds-1ubuntu1_arm64.deb ...
122s Unpacking python3-numpy-dev:arm64 (1:2.2.4+ds-1ubuntu1) ...
122s Selecting previously unselected package libblas3:arm64.
122s Preparing to unpack .../001-libblas3_3.12.1-6build1_arm64.deb ...
122s Unpacking libblas3:arm64 (3.12.1-6build1) ...
122s Selecting previously unselected package libgfortran5:arm64.
122s Preparing to unpack .../002-libgfortran5_15.2.0-7ubuntu1_arm64.deb ...
122s Unpacking libgfortran5:arm64 (15.2.0-7ubuntu1) ...
123s Selecting previously unselected package liblapack3:arm64.
123s Preparing to unpack .../003-liblapack3_3.12.1-6build1_arm64.deb ...
123s Unpacking liblapack3:arm64 (3.12.1-6build1) ...
123s Selecting previously unselected package python3-numpy.
123s Preparing to unpack .../004-python3-numpy_1%3a2.2.4+ds-1ubuntu1_arm64.deb ...
123s Unpacking python3-numpy (1:2.2.4+ds-1ubuntu1) ...
123s Selecting previously unselected package m4.
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123s Selecting previously unselected package autotools-dev.
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124s Preparing to unpack .../008-automake_1%3a1.18.1-2_all.deb ...
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124s Selecting previously unselected package autopoint.
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124s Selecting previously unselected package libisl23:arm64.
124s Preparing to unpack .../010-libisl23_0.27-1_arm64.deb ...
124s Unpacking libisl23:arm64 (0.27-1) ...
124s Selecting previously unselected package libmpc3:arm64.
124s Preparing to unpack .../011-libmpc3_1.3.1-1build3_arm64.deb ...
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124s Selecting previously unselected package cpp-15-aarch64-linux-gnu.
124s Preparing to unpack .../012-cpp-15-aarch64-linux-gnu_15.2.0-7ubuntu1_arm64.deb ...
124s Unpacking cpp-15-aarch64-linux-gnu (15.2.0-7ubuntu1) ...
124s Selecting previously unselected package cpp-15.
125s Preparing to unpack .../013-cpp-15_15.2.0-7ubuntu1_arm64.deb ...
125s Unpacking cpp-15 (15.2.0-7ubuntu1) ...
125s Selecting previously unselected package cpp-aarch64-linux-gnu.
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125s Unpacking cpp-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ...
125s Selecting previously unselected package cpp.
125s Preparing to unpack .../015-cpp_4%3a15.2.0-4ubuntu1_arm64.deb ...
125s Unpacking cpp (4:15.2.0-4ubuntu1) ...
125s Selecting previously unselected package libcc1-0:arm64.
125s Preparing to unpack .../016-libcc1-0_15.2.0-7ubuntu1_arm64.deb ...
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125s Selecting previously unselected package libgomp1:arm64.
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125s Selecting previously unselected package libitm1:arm64.
125s Preparing to unpack .../018-libitm1_15.2.0-7ubuntu1_arm64.deb ...
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125s Selecting previously unselected package libasan8:arm64.
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125s Selecting previously unselected package liblsan0:arm64.
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125s Selecting previously unselected package libtsan2:arm64.
125s Preparing to unpack .../021-libtsan2_15.2.0-7ubuntu1_arm64.deb ...
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125s Selecting previously unselected package libubsan1:arm64.
126s Preparing to unpack .../022-libubsan1_15.2.0-7ubuntu1_arm64.deb ...
126s Unpacking libubsan1:arm64 (15.2.0-7ubuntu1) ...
126s Selecting previously unselected package libhwasan0:arm64.
126s Preparing to unpack .../023-libhwasan0_15.2.0-7ubuntu1_arm64.deb ...
126s Unpacking libhwasan0:arm64 (15.2.0-7ubuntu1) ...
126s Selecting previously unselected package libgcc-15-dev:arm64.
126s Preparing to unpack .../024-libgcc-15-dev_15.2.0-7ubuntu1_arm64.deb ...
126s Unpacking libgcc-15-dev:arm64 (15.2.0-7ubuntu1) ...
126s Selecting previously unselected package gcc-15-aarch64-linux-gnu.
126s Preparing to unpack .../025-gcc-15-aarch64-linux-gnu_15.2.0-7ubuntu1_arm64.deb ...
126s Unpacking gcc-15-aarch64-linux-gnu (15.2.0-7ubuntu1) ...
127s Selecting previously unselected package gcc-15.
127s Preparing to unpack .../026-gcc-15_15.2.0-7ubuntu1_arm64.deb ...
127s Unpacking gcc-15 (15.2.0-7ubuntu1) ...
127s Selecting previously unselected package gcc-aarch64-linux-gnu.
127s Preparing to unpack .../027-gcc-aarch64-linux-gnu_4%3a15.2.0-4ubuntu1_arm64.deb ...
127s Unpacking gcc-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ...
127s Selecting previously unselected package gcc.
127s Preparing to unpack .../028-gcc_4%3a15.2.0-4ubuntu1_arm64.deb ...
127s Unpacking gcc (4:15.2.0-4ubuntu1) ...
127s Selecting previously unselected package libstdc++-15-dev:arm64.
127s Preparing to unpack .../029-libstdc++-15-dev_15.2.0-7ubuntu1_arm64.deb ...
127s Unpacking libstdc++-15-dev:arm64 (15.2.0-7ubuntu1) ...
128s Selecting previously unselected package g++-15-aarch64-linux-gnu.
128s Preparing to unpack .../030-g++-15-aarch64-linux-gnu_15.2.0-7ubuntu1_arm64.deb ...
128s Unpacking g++-15-aarch64-linux-gnu (15.2.0-7ubuntu1) ...
128s Selecting previously unselected package g++-15.
128s Preparing to unpack .../031-g++-15_15.2.0-7ubuntu1_arm64.deb ...
128s Unpacking g++-15 (15.2.0-7ubuntu1) ...
128s Selecting previously unselected package g++-aarch64-linux-gnu.
128s Preparing to unpack .../032-g++-aarch64-linux-gnu_4%3a15.2.0-4ubuntu1_arm64.deb ...
128s Unpacking g++-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ...
128s Selecting previously unselected package g++.
128s Preparing to unpack .../033-g++_4%3a15.2.0-4ubuntu1_arm64.deb ...
128s Unpacking g++ (4:15.2.0-4ubuntu1) ...
128s Selecting previously unselected package build-essential.
129s Preparing to unpack .../034-build-essential_12.12ubuntu1_arm64.deb ...
129s Unpacking build-essential (12.12ubuntu1) ...
129s Selecting previously unselected package cd-hit.
129s Preparing to unpack .../035-cd-hit_4.8.1-4_arm64.deb ...
129s Unpacking cd-hit (4.8.1-4) ...
129s Selecting previously unselected package libdebhelper-perl.
129s Preparing to unpack .../036-libdebhelper-perl_13.24.2ubuntu1_all.deb ...
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129s Selecting previously unselected package libtool.
129s Preparing to unpack .../037-libtool_2.5.4-4build1_all.deb ...
129s Unpacking libtool (2.5.4-4build1) ...
129s Selecting previously unselected package dh-autoreconf.
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129s Unpacking dh-autoreconf (21) ...
129s Selecting previously unselected package libarchive-zip-perl.
129s Preparing to unpack .../039-libarchive-zip-perl_1.68-1_all.deb ...
129s Unpacking libarchive-zip-perl (1.68-1) ...
129s Selecting previously unselected package libfile-stripnondeterminism-perl.
129s Preparing to unpack .../040-libfile-stripnondeterminism-perl_1.15.0-1_all.deb ...
129s Unpacking libfile-stripnondeterminism-perl (1.15.0-1) ...
129s Selecting previously unselected package dh-strip-nondeterminism.
129s Preparing to unpack .../041-dh-strip-nondeterminism_1.15.0-1_all.deb ...
129s Unpacking dh-strip-nondeterminism (1.15.0-1) ...
129s Selecting previously unselected package debugedit.
129s Preparing to unpack .../042-debugedit_1%3a5.2-3_arm64.deb ...
129s Unpacking debugedit (1:5.2-3) ...
129s Selecting previously unselected package dwz.
129s Preparing to unpack .../043-dwz_0.16-2_arm64.deb ...
129s Unpacking dwz (0.16-2) ...
129s Selecting previously unselected package gettext.
129s Preparing to unpack .../044-gettext_0.23.1-2build2_arm64.deb ...
129s Unpacking gettext (0.23.1-2build2) ...
130s Selecting previously unselected package intltool-debian.
130s Preparing to unpack .../045-intltool-debian_0.35.0+20060710.6_all.deb ...
130s Unpacking intltool-debian (0.35.0+20060710.6) ...
130s Selecting previously unselected package po-debconf.
130s Preparing to unpack .../046-po-debconf_1.0.21+nmu1_all.deb ...
130s Unpacking po-debconf (1.0.21+nmu1) ...
130s Selecting previously unselected package debhelper.
130s Preparing to unpack .../047-debhelper_13.24.2ubuntu1_all.deb ...
130s Unpacking debhelper (13.24.2ubuntu1) ...
130s Selecting previously unselected package dh-python.
130s Preparing to unpack .../048-dh-python_6.20250414_all.deb ...
130s Unpacking dh-python (6.20250414) ...
130s Selecting previously unselected package libfontenc1:arm64.
130s Preparing to unpack .../049-libfontenc1_1%3a1.1.8-1build1_arm64.deb ...
130s Unpacking libfontenc1:arm64 (1:1.1.8-1build1) ...
130s Selecting previously unselected package x11-common.
130s Preparing to unpack .../050-x11-common_1%3a7.7+24ubuntu1_all.deb ...
130s Unpacking x11-common (1:7.7+24ubuntu1) ...
130s Selecting previously unselected package xfonts-encodings.
130s Preparing to unpack .../051-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ...
130s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ...
130s Selecting previously unselected package xfonts-utils.
130s Preparing to unpack .../052-xfonts-utils_1%3a7.7+7_arm64.deb ...
130s Unpacking xfonts-utils (1:7.7+7) ...
130s Selecting previously unselected package fonts-urw-base35.
130s Preparing to unpack .../053-fonts-urw-base35_20200910-8_all.deb ...
131s Unpacking fonts-urw-base35 (20200910-8) ...
131s Selecting previously unselected package fontconfig-config.
131s Preparing to unpack .../054-fontconfig-config_2.15.0-2.3ubuntu1_arm64.deb ...
132s Unpacking fontconfig-config (2.15.0-2.3ubuntu1) ...
132s Selecting previously unselected package libfontconfig1:arm64.
132s Preparing to unpack .../055-libfontconfig1_2.15.0-2.3ubuntu1_arm64.deb ...
132s Unpacking libfontconfig1:arm64 (2.15.0-2.3ubuntu1) ...
132s Selecting previously unselected package libpixman-1-0:arm64.
132s Preparing to unpack .../056-libpixman-1-0_0.46.4-1_arm64.deb ...
132s Unpacking libpixman-1-0:arm64 (0.46.4-1) ...
132s Selecting previously unselected package libxcb-render0:arm64.
132s Preparing to unpack .../057-libxcb-render0_1.17.0-2build1_arm64.deb ...
132s Unpacking libxcb-render0:arm64 (1.17.0-2build1) ...
132s Selecting previously unselected package libxcb-shm0:arm64.
132s Preparing to unpack .../058-libxcb-shm0_1.17.0-2build1_arm64.deb ...
132s Unpacking libxcb-shm0:arm64 (1.17.0-2build1) ...
132s Selecting previously unselected package libxrender1:arm64.
132s Preparing to unpack .../059-libxrender1_1%3a0.9.12-1_arm64.deb ...
132s Unpacking libxrender1:arm64 (1:0.9.12-1) ...
132s Selecting previously unselected package libcairo2:arm64.
132s Preparing to unpack .../060-libcairo2_1.18.4-1build1_arm64.deb ...
132s Unpacking libcairo2:arm64 (1.18.4-1build1) ...
132s Selecting previously unselected package libdeflate0:arm64.
132s Preparing to unpack .../061-libdeflate0_1.23-2_arm64.deb ...
132s Unpacking libdeflate0:arm64 (1.23-2) ...
132s Selecting previously unselected package libgraphite2-3:arm64.
132s Preparing to unpack .../062-libgraphite2-3_1.3.14-2ubuntu1_arm64.deb ...
132s Unpacking libgraphite2-3:arm64 (1.3.14-2ubuntu1) ...
132s Selecting previously unselected package libharfbuzz0b:arm64.
132s Preparing to unpack .../063-libharfbuzz0b_12.1.0-1_arm64.deb ...
132s Unpacking libharfbuzz0b:arm64 (12.1.0-1) ...
133s Selecting previously unselected package libimagequant0:arm64.
133s Preparing to unpack .../064-libimagequant0_2.18.0-1build1_arm64.deb ...
133s Unpacking libimagequant0:arm64 (2.18.0-1build1) ...
133s Selecting previously unselected package libjpeg-turbo8:arm64.
133s Preparing to unpack .../065-libjpeg-turbo8_2.1.5-4ubuntu2_arm64.deb ...
133s Unpacking libjpeg-turbo8:arm64 (2.1.5-4ubuntu2) ...
133s Selecting previously unselected package libjpeg8:arm64.
133s Preparing to unpack .../066-libjpeg8_8c-2ubuntu11_arm64.deb ...
133s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ...
133s Selecting previously unselected package liblcms2-2:arm64.
133s Preparing to unpack .../067-liblcms2-2_2.16-2_arm64.deb ...
133s Unpacking liblcms2-2:arm64 (2.16-2) ...
133s Selecting previously unselected package liblerc4:arm64.
133s Preparing to unpack .../068-liblerc4_4.0.0+ds-5ubuntu1_arm64.deb ...
133s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu1) ...
133s Selecting previously unselected package libmbedcrypto16:arm64.
133s Preparing to unpack .../069-libmbedcrypto16_3.6.2-3ubuntu1_arm64.deb ...
133s Unpacking libmbedcrypto16:arm64 (3.6.2-3ubuntu1) ...
133s Selecting previously unselected package libmbedx509-7:arm64.
133s Preparing to unpack .../070-libmbedx509-7_3.6.2-3ubuntu1_arm64.deb ...
133s Unpacking libmbedx509-7:arm64 (3.6.2-3ubuntu1) ...
133s Selecting previously unselected package libmbedtls21:arm64.
133s Preparing to unpack .../071-libmbedtls21_3.6.2-3ubuntu1_arm64.deb ...
133s Unpacking libmbedtls21:arm64 (3.6.2-3ubuntu1) ...
133s Selecting previously unselected package ncbi-vdb-data.
133s Preparing to unpack .../072-ncbi-vdb-data_3.2.1+dfsg-2_all.deb ...
133s Unpacking ncbi-vdb-data (3.2.1+dfsg-2) ...
133s Selecting previously unselected package libncbi-vdb3:arm64.
133s Preparing to unpack .../073-libncbi-vdb3_3.2.1+dfsg-2_arm64.deb ...
133s Unpacking libncbi-vdb3:arm64 (3.2.1+dfsg-2) ...
133s Selecting previously unselected package libqhull-r8.0:arm64.
134s Preparing to unpack .../074-libqhull-r8.0_2020.2-6build1_arm64.deb ...
134s Unpacking libqhull-r8.0:arm64 (2020.2-6build1) ...
134s Selecting previously unselected package libraqm0:arm64.
134s Preparing to unpack .../075-libraqm0_0.10.3-1_arm64.deb ...
134s Unpacking libraqm0:arm64 (0.10.3-1) ...
134s Selecting previously unselected package libsharpyuv0:arm64.
134s Preparing to unpack .../076-libsharpyuv0_1.5.0-0.1_arm64.deb ...
134s Unpacking libsharpyuv0:arm64 (1.5.0-0.1) ...
134s Selecting previously unselected package libjbig0:arm64.
134s Preparing to unpack .../077-libjbig0_2.1-6.1ubuntu2_arm64.deb ...
134s Unpacking libjbig0:arm64 (2.1-6.1ubuntu2) ...
134s Selecting previously unselected package libwebp7:arm64.
134s Preparing to unpack .../078-libwebp7_1.5.0-0.1_arm64.deb ...
134s Unpacking libwebp7:arm64 (1.5.0-0.1) ...
134s Selecting previously unselected package libtiff6:arm64.
134s Preparing to unpack .../079-libtiff6_4.7.0-3ubuntu3_arm64.deb ...
134s Unpacking libtiff6:arm64 (4.7.0-3ubuntu3) ...
134s Selecting previously unselected package libwebpdemux2:arm64.
134s Preparing to unpack .../080-libwebpdemux2_1.5.0-0.1_arm64.deb ...
134s Unpacking libwebpdemux2:arm64 (1.5.0-0.1) ...
134s Selecting previously unselected package libwebpmux3:arm64.
134s Preparing to unpack .../081-libwebpmux3_1.5.0-0.1_arm64.deb ...
134s Unpacking libwebpmux3:arm64 (1.5.0-0.1) ...
134s Selecting previously unselected package ncbi-data.
134s Preparing to unpack .../082-ncbi-data_6.1.20170106+dfsg2-6_all.deb ...
134s Unpacking ncbi-data (6.1.20170106+dfsg2-6) ...
135s Selecting previously unselected package ncbi-blast+.
135s Preparing to unpack .../083-ncbi-blast+_2.16.0+ds-7_arm64.deb ...
135s Unpacking ncbi-blast+ (2.16.0+ds-7) ...
136s Selecting previously unselected package python3-charset-normalizer.
136s Preparing to unpack .../084-python3-charset-normalizer_3.4.2-1_arm64.deb ...
136s Unpacking python3-charset-normalizer (3.4.2-1) ...
136s Selecting previously unselected package libopenjp2-7:arm64.
136s Preparing to unpack .../085-libopenjp2-7_2.5.3-2.1_arm64.deb ...
136s Unpacking libopenjp2-7:arm64 (2.5.3-2.1) ...
136s Selecting previously unselected package python3-pil:arm64.
136s Preparing to unpack .../086-python3-pil_11.3.0-1ubuntu2_arm64.deb ...
136s Unpacking python3-pil:arm64 (11.3.0-1ubuntu2) ...
136s Selecting previously unselected package python3-cairo.
136s Preparing to unpack .../087-python3-cairo_1.27.0-2build1_arm64.deb ...
136s Unpacking python3-cairo (1.27.0-2build1) ...
136s Selecting previously unselected package python3-freetype.
136s Preparing to unpack .../088-python3-freetype_2.5.1-2_all.deb ...
136s Unpacking python3-freetype (2.5.1-2) ...
136s Selecting previously unselected package python3-rlpycairo.
136s Preparing to unpack .../089-python3-rlpycairo_0.3.0-4_all.deb ...
136s Unpacking python3-rlpycairo (0.3.0-4) ...
136s Selecting previously unselected package python3-reportlab.
136s Preparing to unpack .../090-python3-reportlab_4.4.4-2_all.deb ...
136s Unpacking python3-reportlab (4.4.4-2) ...
136s Selecting previously unselected package sgml-base.
136s Preparing to unpack .../091-sgml-base_1.31+nmu1_all.deb ...
136s Unpacking sgml-base (1.31+nmu1) ...
136s Selecting previously unselected package xml-core.
136s Preparing to unpack .../092-xml-core_0.19_all.deb ...
136s Unpacking xml-core (0.19) ...
136s Selecting previously unselected package w3c-sgml-lib.
136s Preparing to unpack .../093-w3c-sgml-lib_1.3-3_all.deb ...
136s Unpacking w3c-sgml-lib (1.3-3) ...
137s Selecting previously unselected package python3-biopython.
137s Preparing to unpack .../094-python3-biopython_1.85+dfsg-4_arm64.deb ...
137s Unpacking python3-biopython (1.85+dfsg-4) ...
137s Selecting previously unselected package python3-packaging.
137s Preparing to unpack .../095-python3-packaging_25.0-1_all.deb ...
137s Unpacking python3-packaging (25.0-1) ...
137s Selecting previously unselected package python3-dateutil.
137s Preparing to unpack .../096-python3-dateutil_2.9.0-4_all.deb ...
137s Unpacking python3-dateutil (2.9.0-4) ...
137s Selecting previously unselected package python3-pytz.
137s Preparing to unpack .../097-python3-pytz_2025.2-4_all.deb ...
137s Unpacking python3-pytz (2025.2-4) ...
137s Selecting previously unselected package python3-pandas-lib:arm64.
137s Preparing to unpack .../098-python3-pandas-lib_2.3.3+dfsg-1ubuntu1_arm64.deb ...
137s Unpacking python3-pandas-lib:arm64 (2.3.3+dfsg-1ubuntu1) ...
138s Selecting previously unselected package python3-pandas.
138s Preparing to unpack .../099-python3-pandas_2.3.3+dfsg-1ubuntu1_all.deb ...
138s Unpacking python3-pandas (2.3.3+dfsg-1ubuntu1) ...
138s Selecting previously unselected package python3-decorator.
138s Preparing to unpack .../100-python3-decorator_5.2.1-2_all.deb ...
138s Unpacking python3-decorator (5.2.1-2) ...
138s Selecting previously unselected package python3-scipy.
139s Preparing to unpack .../101-python3-scipy_1.16.3-1_arm64.deb ...
139s Unpacking python3-scipy (1.16.3-1) ...
140s Selecting previously unselected package vsearch.
140s Preparing to unpack .../102-vsearch_2.30.0-1_arm64.deb ...
140s Unpacking vsearch (2.30.0-1) ...
140s Selecting previously unselected package python3-presto.
140s Preparing to unpack .../103-python3-presto_0.7.5-1_arm64.deb ...
140s Unpacking python3-presto (0.7.5-1) ...
140s Selecting previously unselected package presto.
140s Preparing to unpack .../104-presto_0.7.5-1_all.deb ...
140s Unpacking presto (0.7.5-1) ...
140s Selecting previously unselected package pybuild-plugin-autopkgtest.
140s Preparing to unpack .../105-pybuild-plugin-autopkgtest_6.20250414_all.deb ...
140s Unpacking pybuild-plugin-autopkgtest (6.20250414) ...
140s Selecting previously unselected package python3-all.
140s Preparing to unpack .../106-python3-all_3.13.7-1_arm64.deb ...
140s Unpacking python3-all (3.13.7-1) ...
140s Setting up dh-python (6.20250414) ...
141s Setting up libgraphite2-3:arm64 (1.3.14-2ubuntu1) ...
141s Setting up liblcms2-2:arm64 (2.16-2) ...
141s Setting up ncbi-data (6.1.20170106+dfsg2-6) ...
141s Setting up libpixman-1-0:arm64 (0.46.4-1) ...
141s Setting up libsharpyuv0:arm64 (1.5.0-0.1) ...
141s Setting up liblerc4:arm64 (4.0.0+ds-5ubuntu1) ...
141s Setting up libxrender1:arm64 (1:0.9.12-1) ...
141s Setting up libxcb-render0:arm64 (1.17.0-2build1) ...
141s Setting up libarchive-zip-perl (1.68-1) ...
141s Setting up vsearch (2.30.0-1) ...
141s Setting up python3-charset-normalizer (3.4.2-1) ...
141s Setting up libdebhelper-perl (13.24.2ubuntu1) ...
141s Setting up x11-common (1:7.7+24ubuntu1) ...
142s Setting up libdeflate0:arm64 (1.23-2) ...
142s Setting up m4 (1.4.20-2) ...
142s Setting up libqhull-r8.0:arm64 (2020.2-6build1) ...
142s Setting up python3-all (3.13.7-1) ...
142s Setting up python3-pytz (2025.2-4) ...
142s Setting up libxcb-shm0:arm64 (1.17.0-2build1) ...
142s Setting up libgomp1:arm64 (15.2.0-7ubuntu1) ...
142s Setting up python3-freetype (2.5.1-2) ...
142s Setting up libjbig0:arm64 (2.1-6.1ubuntu2) ...
142s Setting up python3-decorator (5.2.1-2) ...
143s Setting up libfontenc1:arm64 (1:1.1.8-1build1) ...
143s Setting up autotools-dev (20240727.1) ...
143s Setting up libblas3:arm64 (3.12.1-6build1) ...
143s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode
143s Setting up python3-packaging (25.0-1) ...
143s Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ...
143s Setting up libimagequant0:arm64 (2.18.0-1build1) ...
143s Setting up libmpc3:arm64 (1.3.1-1build3) ...
143s Setting up python3-numpy-dev:arm64 (1:2.2.4+ds-1ubuntu1) ...
143s Setting up autopoint (0.23.1-2build2) ...
143s Setting up libjpeg-turbo8:arm64 (2.1.5-4ubuntu2) ...
143s Setting up libgfortran5:arm64 (15.2.0-7ubuntu1) ...
143s Setting up autoconf (2.72-3.1ubuntu1) ...
143s Setting up libwebp7:arm64 (1.5.0-0.1) ...
143s Setting up libubsan1:arm64 (15.2.0-7ubuntu1) ...
143s Setting up dwz (0.16-2) ...
143s Setting up libhwasan0:arm64 (15.2.0-7ubuntu1) ...
143s Setting up libasan8:arm64 (15.2.0-7ubuntu1) ...
143s Setting up debugedit (1:5.2-3) ...
143s Setting up libopenjp2-7:arm64 (2.5.3-2.1) ...
143s Setting up libharfbuzz0b:arm64 (12.1.0-1) ...
143s Setting up ncbi-vdb-data (3.2.1+dfsg-2) ...
143s Setting up python3-dateutil (2.9.0-4) ...
144s Setting up sgml-base (1.31+nmu1) ...
144s Setting up libmbedcrypto16:arm64 (3.6.2-3ubuntu1) ...
144s Setting up libtsan2:arm64 (15.2.0-7ubuntu1) ...
144s Setting up libisl23:arm64 (0.27-1) ...
144s Setting up libwebpmux3:arm64 (1.5.0-0.1) ...
144s Setting up libcc1-0:arm64 (15.2.0-7ubuntu1) ...
144s Setting up liblsan0:arm64 (15.2.0-7ubuntu1) ...
144s Setting up libitm1:arm64 (15.2.0-7ubuntu1) ...
144s Setting up cd-hit (4.8.1-4) ...
144s Setting up libjpeg8:arm64 (8c-2ubuntu11) ...
144s Setting up automake (1:1.18.1-2) ...
144s update-alternatives: using /usr/bin/automake-1.18 to provide /usr/bin/automake (automake) in auto mode
144s Setting up libfile-stripnondeterminism-perl (1.15.0-1) ...
144s Setting up cpp-15-aarch64-linux-gnu (15.2.0-7ubuntu1) ...
144s Setting up liblapack3:arm64 (3.12.1-6build1) ...
144s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode
144s Setting up gettext (0.23.1-2build2) ...
144s Setting up libgcc-15-dev:arm64 (15.2.0-7ubuntu1) ...
144s Setting up libwebpdemux2:arm64 (1.5.0-0.1) ...
144s Setting up xfonts-utils (1:7.7+7) ...
144s Setting up intltool-debian (0.35.0+20060710.6) ...
144s Setting up cpp-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ...
144s Setting up libmbedx509-7:arm64 (3.6.2-3ubuntu1) ...
144s Setting up libstdc++-15-dev:arm64 (15.2.0-7ubuntu1) ...
144s Setting up libraqm0:arm64 (0.10.3-1) ...
144s Setting up python3-numpy (1:2.2.4+ds-1ubuntu1) ...
148s Setting up libmbedtls21:arm64 (3.6.2-3ubuntu1) ...
148s Setting up dh-strip-nondeterminism (1.15.0-1) ...
148s Setting up cpp-15 (15.2.0-7ubuntu1) ...
148s Setting up libtiff6:arm64 (4.7.0-3ubuntu3) ...
148s Setting up cpp (4:15.2.0-4ubuntu1) ...
148s Setting up xml-core (0.19) ...
148s Setting up gcc-15-aarch64-linux-gnu (15.2.0-7ubuntu1) ...
148s Setting up python3-scipy (1.16.3-1) ...
156s Setting up po-debconf (1.0.21+nmu1) ...
156s Setting up python3-pandas-lib:arm64 (2.3.3+dfsg-1ubuntu1) ...
156s Setting up libncbi-vdb3:arm64 (3.2.1+dfsg-2) ...
156s Setting up fonts-urw-base35 (20200910-8) ...
156s Setting up ncbi-blast+ (2.16.0+ds-7) ...
156s Setting up python3-pil:arm64 (11.3.0-1ubuntu2) ...
157s Setting up gcc-15 (15.2.0-7ubuntu1) ...
157s Setting up python3-pandas (2.3.3+dfsg-1ubuntu1) ...
167s Setting up g++-15-aarch64-linux-gnu (15.2.0-7ubuntu1) ...
167s Setting up g++-15 (15.2.0-7ubuntu1) ...
167s Setting up gcc-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ...
168s Setting up libtool (2.5.4-4build1) ...
168s Setting up fontconfig-config (2.15.0-2.3ubuntu1) ...
168s Setting up gcc (4:15.2.0-4ubuntu1) ...
168s Setting up dh-autoreconf (21) ...
168s Setting up g++-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ...
168s Setting up libfontconfig1:arm64 (2.15.0-2.3ubuntu1) ...
168s Setting up debhelper (13.24.2ubuntu1) ...
168s Setting up libcairo2:arm64 (1.18.4-1build1) ...
168s Setting up g++ (4:15.2.0-4ubuntu1) ...
168s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
168s Setting up build-essential (12.12ubuntu1) ...
168s Setting up python3-cairo (1.27.0-2build1) ...
168s Setting up pybuild-plugin-autopkgtest (6.20250414) ...
168s Setting up python3-rlpycairo (0.3.0-4) ...
169s Setting up python3-reportlab (4.4.4-2) ...
170s Processing triggers for libc-bin (2.42-0ubuntu3) ...
170s Processing triggers for man-db (2.13.1-1) ...
175s Processing triggers for install-info (7.1.1-1ubuntu1) ...
175s Processing triggers for sgml-base (1.31+nmu1) ...
175s Setting up w3c-sgml-lib (1.3-3) ...
231s Setting up python3-biopython (1.85+dfsg-4) ...
233s Setting up python3-presto (0.7.5-1) ...
234s Setting up presto (0.7.5-1) ...
235s autopkgtest [12:23:20]: test pybuild-autopkgtest: pybuild-autopkgtest
235s autopkgtest [12:23:20]: test pybuild-autopkgtest: [-----------------------
236s pybuild-autopkgtest
236s I: pybuild pybuild:308: cp -r /tmp/autopkgtest.6fxfkK/build.LtW/src/bin /tmp/autopkgtest.6fxfkK/autopkgtest_tmp/build; rm /tmp/autopkgtest.6fxfkK/build.LtW/src/tests/test_ClusterSets.py || echo "Test file already removed or moved";
237s I: pybuild base:311: cd /tmp/autopkgtest.6fxfkK/autopkgtest_tmp/build; python3.13 -m unittest discover -v 
237s 
237s ----------------------------------------------------------------------
237s Ran 0 tests in 0.000s
237s 
237s NO TESTS RAN
237s autopkgtest [12:23:22]: test pybuild-autopkgtest: -----------------------]
238s pybuild-autopkgtest  PASS
238s autopkgtest [12:23:23]: test pybuild-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
238s autopkgtest [12:23:23]: @@@@@@@@@@@@@@@@@@@@ summary
238s pybuild-autopkgtest  PASS