0s autopkgtest [19:11:30]: starting date and time: 2026-01-22 19:11:30+0000 0s autopkgtest [19:11:30]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [19:11:30]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.6gjbc49p/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults --apt-upgrade nipype --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=python3-defaults/3.14.2-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-arm64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@sto01-arm64-5.secgroup --name adt-resolute-arm64-nipype-20260122-191129-juju-7f2275-prod-proposed-migration-environment-20-0b14e265-5346-4c5a-9430-431679bd17fe --image adt/ubuntu-resolute-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-autopkgtest-workers-arm64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 3s Creating nova instance adt-resolute-arm64-nipype-20260122-191129-juju-7f2275-prod-proposed-migration-environment-20-0b14e265-5346-4c5a-9430-431679bd17fe from image adt/ubuntu-resolute-arm64-server-20260122.img (UUID ed27afc7-5f46-4e8b-ad73-864280a0ddbb)... 61s autopkgtest [19:12:31]: testbed dpkg architecture: arm64 61s autopkgtest [19:12:31]: testbed apt version: 3.1.12 61s autopkgtest [19:12:31]: @@@@@@@@@@@@@@@@@@@@ test bed setup 62s autopkgtest [19:12:32]: testbed release detected to be: None 62s autopkgtest [19:12:32]: updating testbed package index (apt update) 63s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 63s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 63s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 63s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 63s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [815 kB] 63s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [19.2 kB] 63s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [2820 B] 63s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [80.9 kB] 63s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 Packages [103 kB] 63s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 c-n-f Metadata [3316 B] 63s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 Packages [7876 B] 63s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 c-n-f Metadata [120 B] 63s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 Packages [639 kB] 63s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 c-n-f Metadata [16.2 kB] 63s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 Packages [4636 B] 63s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 c-n-f Metadata [460 B] 66s Fetched 1818 kB in 1s (2212 kB/s) 67s Reading package lists... 67s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 67s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 67s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 67s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 68s Reading package lists... 68s Reading package lists... 69s Building dependency tree... 69s Reading state information... 69s Calculating upgrade... 69s The following packages were automatically installed and are no longer required: 69s python3.13 python3.13-minimal 69s Use 'sudo apt autoremove' to remove them. 69s The following NEW packages will be installed: 69s libpython3.14-minimal libpython3.14-stdlib python3.14 python3.14-minimal 69s The following packages will be upgraded: 69s libpython3-stdlib python3 python3-gdbm python3-minimal 69s 4 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. 69s Need to get 6705 kB of archives. 69s After this operation, 26.0 MB of additional disk space will be used. 69s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 libpython3.14-minimal arm64 3.14.2-1 [917 kB] 70s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 python3.14-minimal arm64 3.14.2-1 [2548 kB] 70s Get:3 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 python3-gdbm arm64 3.14.2-1 [11.1 kB] 70s Get:4 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 python3-minimal arm64 3.14.2-1 [28.2 kB] 70s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 python3 arm64 3.14.2-1 [22.9 kB] 70s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 libpython3.14-stdlib arm64 3.14.2-1 [2351 kB] 70s Get:7 http://ftpmaster.internal/ubuntu resolute/main arm64 python3.14 arm64 3.14.2-1 [816 kB] 70s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 libpython3-stdlib arm64 3.14.2-1 [10.9 kB] 70s dpkg-preconfigure: unable to re-open stdin: No such file or directory 70s Fetched 6705 kB in 0s (15.7 MB/s) 70s Selecting previously unselected package libpython3.14-minimal:arm64. 70s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 135223 files and directories currently installed.) 70s Preparing to unpack .../libpython3.14-minimal_3.14.2-1_arm64.deb ... 70s Unpacking libpython3.14-minimal:arm64 (3.14.2-1) ... 70s Selecting previously unselected package python3.14-minimal. 70s Preparing to unpack .../python3.14-minimal_3.14.2-1_arm64.deb ... 70s Unpacking python3.14-minimal (3.14.2-1) ... 71s Preparing to unpack .../python3-gdbm_3.14.2-1_arm64.deb ... 71s Unpacking python3-gdbm (3.14.2-1) over (3.13.9-1) ... 71s Setting up libpython3.14-minimal:arm64 (3.14.2-1) ... 71s Setting up python3.14-minimal (3.14.2-1) ... 72s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 135565 files and directories currently installed.) 72s Preparing to unpack .../python3-minimal_3.14.2-1_arm64.deb ... 72s Unpacking python3-minimal (3.14.2-1) over (3.13.7-1) ... 72s Setting up python3-minimal (3.14.2-1) ... 72s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 135565 files and directories currently installed.) 72s Preparing to unpack .../python3_3.14.2-1_arm64.deb ... 72s running python pre-rtupdate hooks for python3.14... 72s Unpacking python3 (3.14.2-1) over (3.13.7-1) ... 73s Selecting previously unselected package libpython3.14-stdlib:arm64. 73s Preparing to unpack .../libpython3.14-stdlib_3.14.2-1_arm64.deb ... 73s Unpacking libpython3.14-stdlib:arm64 (3.14.2-1) ... 73s Selecting previously unselected package python3.14. 73s Preparing to unpack .../python3.14_3.14.2-1_arm64.deb ... 73s Unpacking python3.14 (3.14.2-1) ... 73s Preparing to unpack .../libpython3-stdlib_3.14.2-1_arm64.deb ... 73s Unpacking libpython3-stdlib:arm64 (3.14.2-1) over (3.13.7-1) ... 73s Setting up libpython3.14-stdlib:arm64 (3.14.2-1) ... 73s Setting up python3.14 (3.14.2-1) ... 74s Setting up libpython3-stdlib:arm64 (3.14.2-1) ... 74s Setting up python3-gdbm (3.14.2-1) ... 74s Setting up python3 (3.14.2-1) ... 74s running python rtupdate hooks for python3.14... 74s running python post-rtupdate hooks for python3.14... 74s Processing triggers for man-db (2.13.1-1) ... 75s Processing triggers for systemd (259-1ubuntu2) ... 75s autopkgtest [19:12:45]: upgrading testbed (apt dist-upgrade and autopurge) 75s Reading package lists... 75s Building dependency tree... 75s Reading state information... 76s Calculating upgrade... 76s The following packages were automatically installed and are no longer required: 76s python3.13 python3.13-minimal 76s Use 'sudo apt autoremove' to remove them. 76s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 76s Reading package lists... 76s Building dependency tree... 76s Reading state information... 77s Solving dependencies... 77s The following packages will be REMOVED: 77s python3.13* python3.13-minimal* 77s 0 upgraded, 0 newly installed, 2 to remove and 0 not upgraded. 77s After this operation, 7766 kB disk space will be freed. 77s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 135995 files and directories currently installed.) 77s Removing python3.13 (3.13.11-1) ... 77s Removing python3.13-minimal (3.13.11-1) ... 78s Processing triggers for man-db (2.13.1-1) ... 79s Processing triggers for systemd (259-1ubuntu2) ... 79s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 135968 files and directories currently installed.) 79s Purging configuration files for python3.13-minimal (3.13.11-1) ... 81s autopkgtest [19:12:51]: testbed running kernel: Linux 6.18.0-9-generic #9-Ubuntu SMP PREEMPT_DYNAMIC Mon Jan 12 16:41:39 UTC 2026 82s autopkgtest [19:12:52]: @@@@@@@@@@@@@@@@@@@@ apt-source nipype 83s Get:1 http://ftpmaster.internal/ubuntu resolute/universe nipype 1.10.0-1 (dsc) [2988 B] 83s Get:2 http://ftpmaster.internal/ubuntu resolute/universe nipype 1.10.0-1 (tar) [2925 kB] 83s Get:3 http://ftpmaster.internal/ubuntu resolute/universe nipype 1.10.0-1 (diff) [17.5 kB] 84s gpgv: Signature made Sat Dec 20 11:29:54 2025 UTC 84s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 84s gpgv: issuer "emollier@debian.org" 84s gpgv: Can't check signature: No public key 84s dpkg-source: warning: cannot verify inline signature for ./nipype_1.10.0-1.dsc: no acceptable signature found 84s autopkgtest [19:12:54]: testing package nipype version 1.10.0-1 84s autopkgtest [19:12:54]: build not needed 85s autopkgtest [19:12:55]: test run-unit-test: preparing testbed 85s Reading package lists... 85s Building dependency tree... 85s Reading state information... 85s Solving dependencies... 86s The following NEW packages will be installed: 86s diffstat docutils-common fontconfig fontconfig-config fonts-dejavu-core 86s fonts-dejavu-mono gettext graphviz libaec0 libaom3 libblas3 libcairo2 86s libcdt6 libcgraph8 libdatrie1 libde265-0 libdeflate0 libfontconfig1 libgd3 86s libgfortran5 libgomp1 libgraphite2-3 libgvc7 libgvplugin-gd8 86s libgvplugin-pango8 libgvpr2 libharfbuzz0b libhdf5-310 libhdf5-hl-310 86s libheif-plugin-aomdec libheif-plugin-libde265 libheif1 libimagequant0 86s libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-underscore libjson-perl 86s liblapack3 liblerc4 libltdl7 liblzf1 libpango-1.0-0 libpangocairo-1.0-0 86s libpangoft2-1.0-0 libpathplan4 libpixman-1-0 libqhull-r8.0 libsharpyuv0 86s libsz2 libthai-data libthai0 libtiff6 libwebp7 libxcb-render0 libxcb-shm0 86s libxdot4 libxpm4 libxrender1 libxslt1.1 python-nipype-doc python3-acres 86s python3-alabaster python3-all python3-ci-info python3-click 86s python3-decorator python3-deepdiff python3-defusedxml python3-dipy 86s python3-dipy-lib python3-docutils python3-etelemetry python3-execnet 86s python3-filelock python3-h5py python3-h5py-serial python3-imagesize 86s python3-iniconfig python3-jsonpickle python3-looseversion python3-lxml 86s python3-networkx python3-nibabel python3-nipype python3-numpy 86s python3-numpy-dev python3-orderly-set python3-pandas python3-pandas-lib 86s python3-pluggy python3-prov python3-psutil python3-puremagic python3-pydot 86s python3-pytest python3-pytest-xdist python3-pytz python3-rdflib 86s python3-roman-numerals python3-scipy python3-setuptools-scm 86s python3-simplejson python3-snowballstemmer python3-sphinx python3-tqdm 86s python3-traits python3-trx-python python3.13 python3.13-minimal quilt 86s sgml-base sphinx-common xml-core 86s 0 upgraded, 115 newly installed, 0 to remove and 0 not upgraded. 86s Need to get 85.7 MB of archives. 86s After this operation, 455 MB of additional disk space will be used. 86s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 python3.13-minimal arm64 3.13.11-1 [2346 kB] 86s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-numpy-dev arm64 1:2.3.5+ds-3 [366 kB] 86s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 libblas3 arm64 3.12.1-7ubuntu1 [181 kB] 86s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 libgfortran5 arm64 15.2.0-11ubuntu1 [450 kB] 86s Get:5 http://ftpmaster.internal/ubuntu resolute/main arm64 liblapack3 arm64 3.12.1-7ubuntu1 [2299 kB] 87s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-numpy arm64 1:2.3.5+ds-3 [4569 kB] 87s Get:7 http://ftpmaster.internal/ubuntu resolute/main arm64 python3.13 arm64 3.13.11-1 [758 kB] 87s Get:8 http://ftpmaster.internal/ubuntu resolute/main arm64 diffstat arm64 1.68-1 [29.1 kB] 87s Get:9 http://ftpmaster.internal/ubuntu resolute/main arm64 sgml-base all 1.31+nmu1 [11.0 kB] 87s Get:10 http://ftpmaster.internal/ubuntu resolute/main arm64 xml-core all 0.19build1 [20.3 kB] 87s Get:11 http://ftpmaster.internal/ubuntu resolute/main arm64 docutils-common all 0.22.4+dfsg-1 [130 kB] 87s Get:12 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-mono all 2.37-8build1 [502 kB] 87s Get:13 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-core all 2.37-8build1 [834 kB] 87s Get:14 http://ftpmaster.internal/ubuntu resolute/main arm64 fontconfig-config arm64 2.15.0-2.4ubuntu1 [38.2 kB] 87s Get:15 http://ftpmaster.internal/ubuntu resolute/main arm64 libfontconfig1 arm64 2.15.0-2.4ubuntu1 [143 kB] 87s Get:16 http://ftpmaster.internal/ubuntu resolute/main arm64 fontconfig arm64 2.15.0-2.4ubuntu1 [191 kB] 87s Get:17 http://ftpmaster.internal/ubuntu resolute/main arm64 libgomp1 arm64 15.2.0-11ubuntu1 [147 kB] 87s Get:18 http://ftpmaster.internal/ubuntu resolute/main arm64 gettext arm64 0.23.2-1 [998 kB] 87s Get:19 http://ftpmaster.internal/ubuntu resolute/universe arm64 libcdt6 arm64 14.1.1-2ubuntu2 [19.0 kB] 87s Get:20 http://ftpmaster.internal/ubuntu resolute/universe arm64 libcgraph8 arm64 14.1.1-2ubuntu2 [53.6 kB] 87s Get:21 http://ftpmaster.internal/ubuntu resolute/main arm64 libltdl7 arm64 2.5.4-9 [43.3 kB] 87s Get:22 http://ftpmaster.internal/ubuntu resolute/universe arm64 libpathplan4 arm64 14.1.1-2ubuntu2 [24.7 kB] 87s Get:23 http://ftpmaster.internal/ubuntu resolute/universe arm64 libxdot4 arm64 14.1.1-2ubuntu2 [23.0 kB] 87s Get:24 http://ftpmaster.internal/ubuntu resolute/universe arm64 libgvc7 arm64 14.1.1-2ubuntu2 [371 kB] 87s Get:25 http://ftpmaster.internal/ubuntu resolute/universe arm64 libgvpr2 arm64 14.1.1-2ubuntu2 [122 kB] 87s Get:26 http://ftpmaster.internal/ubuntu resolute/main arm64 libpixman-1-0 arm64 0.46.4-1 [204 kB] 87s Get:27 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-render0 arm64 1.17.0-2build1 [18.1 kB] 87s Get:28 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-shm0 arm64 1.17.0-2build1 [6234 B] 87s Get:29 http://ftpmaster.internal/ubuntu resolute/main arm64 libxrender1 arm64 1:0.9.12-1 [19.5 kB] 87s Get:30 http://ftpmaster.internal/ubuntu resolute/main arm64 libcairo2 arm64 1.18.4-3 [556 kB] 87s Get:31 http://ftpmaster.internal/ubuntu resolute/main arm64 libsharpyuv0 arm64 1.5.0-0.1build1 [16.7 kB] 87s Get:32 http://ftpmaster.internal/ubuntu resolute/main arm64 libaom3 arm64 3.13.1-2 [1773 kB] 87s Get:33 http://ftpmaster.internal/ubuntu resolute/main arm64 libheif-plugin-aomdec arm64 1.21.2-1 [13.9 kB] 87s Get:34 http://ftpmaster.internal/ubuntu resolute/main arm64 libde265-0 arm64 1.0.16-1build1 [148 kB] 87s Get:35 http://ftpmaster.internal/ubuntu resolute/main arm64 libheif-plugin-libde265 arm64 1.21.2-1 [9696 B] 87s Get:36 http://ftpmaster.internal/ubuntu resolute/main arm64 libheif1 arm64 1.21.2-1 [502 kB] 87s Get:37 http://ftpmaster.internal/ubuntu resolute/main arm64 libimagequant0 arm64 2.18.0-1build1 [37.1 kB] 87s Get:38 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg-turbo8 arm64 2.1.5-4ubuntu2 [165 kB] 87s Get:39 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 87s Get:40 http://ftpmaster.internal/ubuntu resolute/main arm64 libdeflate0 arm64 1.23-2 [46.4 kB] 87s Get:41 http://ftpmaster.internal/ubuntu resolute/main arm64 libjbig0 arm64 2.1-6.1ubuntu3 [29.2 kB] 87s Get:42 http://ftpmaster.internal/ubuntu resolute/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu2 [174 kB] 87s Get:43 http://ftpmaster.internal/ubuntu resolute/main arm64 libwebp7 arm64 1.5.0-0.1build1 [205 kB] 87s Get:44 http://ftpmaster.internal/ubuntu resolute/main arm64 libtiff6 arm64 4.7.0-3ubuntu3 [196 kB] 87s Get:45 http://ftpmaster.internal/ubuntu resolute/main arm64 libxpm4 arm64 1:3.5.17-1build3 [35.5 kB] 87s Get:46 http://ftpmaster.internal/ubuntu resolute/main arm64 libgd3 arm64 2.3.3-13ubuntu1 [124 kB] 87s Get:47 http://ftpmaster.internal/ubuntu resolute/universe arm64 libgvplugin-gd8 arm64 14.1.1-2ubuntu2 [24.8 kB] 87s Get:48 http://ftpmaster.internal/ubuntu resolute/main arm64 libgraphite2-3 arm64 1.3.14-11ubuntu1 [72.1 kB] 87s Get:49 http://ftpmaster.internal/ubuntu resolute/main arm64 libharfbuzz0b arm64 12.3.0-4 [518 kB] 87s Get:50 http://ftpmaster.internal/ubuntu resolute/main arm64 libthai-data all 0.1.30-1 [155 kB] 87s Get:51 http://ftpmaster.internal/ubuntu resolute/main arm64 libdatrie1 arm64 0.2.14-1 [19.6 kB] 87s Get:52 http://ftpmaster.internal/ubuntu resolute/main arm64 libthai0 arm64 0.1.30-1 [18.3 kB] 87s Get:53 http://ftpmaster.internal/ubuntu resolute/main arm64 libpango-1.0-0 arm64 1.56.4-1 [237 kB] 87s Get:54 http://ftpmaster.internal/ubuntu resolute/main arm64 libpangoft2-1.0-0 arm64 1.56.4-1 [51.4 kB] 87s Get:55 http://ftpmaster.internal/ubuntu resolute/main arm64 libpangocairo-1.0-0 arm64 1.56.4-1 [27.9 kB] 87s Get:56 http://ftpmaster.internal/ubuntu resolute/universe arm64 libgvplugin-pango8 arm64 14.1.1-2ubuntu2 [23.0 kB] 87s Get:57 http://ftpmaster.internal/ubuntu resolute/universe arm64 graphviz arm64 14.1.1-2ubuntu2 [58.6 kB] 87s Get:58 http://ftpmaster.internal/ubuntu resolute/universe arm64 libaec0 arm64 1.1.4-2 [22.2 kB] 87s Get:59 http://ftpmaster.internal/ubuntu resolute/universe arm64 libsz2 arm64 1.1.4-2 [5258 B] 87s Get:60 http://ftpmaster.internal/ubuntu resolute/universe arm64 libhdf5-310 arm64 1.14.5+repack-4 [1286 kB] 87s Get:61 http://ftpmaster.internal/ubuntu resolute/universe arm64 libhdf5-hl-310 arm64 1.14.5+repack-4 [58.9 kB] 87s Get:62 http://ftpmaster.internal/ubuntu resolute/main arm64 libjs-jquery all 3.7.1+dfsg+~3.5.33-1build1 [321 kB] 87s Get:63 http://ftpmaster.internal/ubuntu resolute/main arm64 libjs-underscore all 1.13.7~dfsg+~1.13.0-1 [86.4 kB] 87s Get:64 http://ftpmaster.internal/ubuntu resolute/main arm64 libjson-perl all 4.10000-1 [81.9 kB] 87s Get:65 http://ftpmaster.internal/ubuntu resolute/universe arm64 liblzf1 arm64 3.6-4build1 [7330 B] 87s Get:66 http://ftpmaster.internal/ubuntu resolute/universe arm64 libqhull-r8.0 arm64 2020.2-8 [191 kB] 87s Get:67 http://ftpmaster.internal/ubuntu resolute/main arm64 libxslt1.1 arm64 1.1.43-0.3 [172 kB] 87s Get:68 http://ftpmaster.internal/ubuntu resolute/universe arm64 python-nipype-doc all 1.10.0-1 [1243 kB] 87s Get:69 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-acres all 0.5.0-2 [8256 B] 87s Get:70 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 python3-all arm64 3.14.2-1 [888 B] 87s Get:71 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-ci-info all 0.3.0-1build1 [7556 B] 87s Get:72 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-click all 8.2.0+0.really.8.1.8-1build1 [80.2 kB] 87s Get:73 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-decorator all 5.2.1-2 [28.1 kB] 87s Get:74 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-jsonpickle all 4.0.2+dfsg-2 [40.1 kB] 87s Get:75 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-orderly-set all 5.5.0-2 [15.3 kB] 87s Get:76 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-deepdiff all 8.6.1-1 [75.5 kB] 87s Get:77 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-defusedxml all 0.7.1-3build1 [42.4 kB] 87s Get:78 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-h5py-serial arm64 3.15.1-4 [1483 kB] 87s Get:79 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-h5py all 3.15.1-4 [11.3 kB] 87s Get:80 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-scipy arm64 1.16.3-3 [17.4 MB] 88s Get:81 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-nibabel all 5.3.3-1 [2699 kB] 88s Get:82 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-tqdm all 4.67.1-7 [93.3 kB] 88s Get:83 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-setuptools-scm all 8.2.1-4 [32.8 kB] 88s Get:84 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-trx-python all 0.3-2 [41.0 kB] 88s Get:85 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-dipy-lib arm64 1.11.0-3 [3686 kB] 88s Get:86 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-dipy all 1.11.0-3 [3623 kB] 88s Get:87 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-roman-numerals all 4.1.0-1 [8660 B] 88s Get:88 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-docutils all 0.22.4+dfsg-1 [439 kB] 88s Get:89 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-etelemetry all 0.3.1-1build1 [7550 B] 88s Get:90 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-execnet all 2.1.1-1build1 [33.5 kB] 88s Get:91 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-filelock all 3.20.3-1 [13.5 kB] 88s Get:92 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-imagesize all 1.4.1-1build1 [6900 B] 88s Get:93 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-iniconfig all 2.1.0-2 [6962 B] 88s Get:94 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-looseversion all 1.3.0-3build1 [8498 B] 88s Get:95 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-lxml arm64 6.0.2-1 [2155 kB] 88s Get:96 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-networkx all 3.2.1-4ubuntu2 [11.8 MB] 88s Get:97 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-rdflib all 7.1.1-3 [427 kB] 88s Get:98 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pydot all 4.0.1-1 [35.8 kB] 88s Get:99 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-prov all 2.1.1-1 [101 kB] 88s Get:100 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-puremagic all 1.30-1 [39.5 kB] 88s Get:101 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-simplejson arm64 3.20.1-1build1 [60.9 kB] 88s Get:102 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-traits arm64 6.4.3-2build3 [4094 kB] 88s Get:103 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-psutil arm64 7.1.0-1ubuntu1 [191 kB] 89s Get:104 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-nipype all 1.10.0-1 [1961 kB] 89s Get:105 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pytz all 2025.2-5 [32.4 kB] 89s Get:106 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pandas-lib arm64 2.3.3+dfsg-3 [6290 kB] 89s Get:107 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pandas all 2.3.3+dfsg-3 [2948 kB] 89s Get:108 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pluggy all 1.6.0-2 [21.1 kB] 89s Get:109 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pytest all 9.0.2-2 [277 kB] 89s Get:110 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pytest-xdist all 3.8.0-4 [34.7 kB] 89s Get:111 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-snowballstemmer all 3.0.1-1 [65.9 kB] 89s Get:112 http://ftpmaster.internal/ubuntu resolute/main arm64 sphinx-common all 8.2.3-12 [657 kB] 89s Get:113 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-alabaster all 0.7.16-0.1build1 [18.6 kB] 89s Get:114 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-sphinx all 8.2.3-12 [483 kB] 89s Get:115 http://ftpmaster.internal/ubuntu resolute/universe arm64 quilt all 0.68-1 [439 kB] 89s Fetched 85.7 MB in 3s (28.2 MB/s) 89s Selecting previously unselected package python3.13-minimal. 89s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 135970 files and directories currently installed.) 89s Preparing to unpack .../000-python3.13-minimal_3.13.11-1_arm64.deb ... 89s Unpacking python3.13-minimal (3.13.11-1) ... 89s Selecting previously unselected package python3-numpy-dev:arm64. 89s Preparing to unpack .../001-python3-numpy-dev_1%3a2.3.5+ds-3_arm64.deb ... 89s Unpacking python3-numpy-dev:arm64 (1:2.3.5+ds-3) ... 89s Selecting previously unselected package libblas3:arm64. 89s Preparing to unpack .../002-libblas3_3.12.1-7ubuntu1_arm64.deb ... 89s Unpacking libblas3:arm64 (3.12.1-7ubuntu1) ... 89s Selecting previously unselected package libgfortran5:arm64. 89s Preparing to unpack .../003-libgfortran5_15.2.0-11ubuntu1_arm64.deb ... 89s Unpacking libgfortran5:arm64 (15.2.0-11ubuntu1) ... 90s Selecting previously unselected package liblapack3:arm64. 90s Preparing to unpack .../004-liblapack3_3.12.1-7ubuntu1_arm64.deb ... 90s Unpacking liblapack3:arm64 (3.12.1-7ubuntu1) ... 90s Selecting previously unselected package python3-numpy. 90s Preparing to unpack .../005-python3-numpy_1%3a2.3.5+ds-3_arm64.deb ... 90s Unpacking python3-numpy (1:2.3.5+ds-3) ... 90s Selecting previously unselected package python3.13. 90s Preparing to unpack .../006-python3.13_3.13.11-1_arm64.deb ... 90s Unpacking python3.13 (3.13.11-1) ... 90s Selecting previously unselected package diffstat. 90s Preparing to unpack .../007-diffstat_1.68-1_arm64.deb ... 90s Unpacking diffstat (1.68-1) ... 90s Selecting previously unselected package sgml-base. 90s Preparing to unpack .../008-sgml-base_1.31+nmu1_all.deb ... 90s Unpacking sgml-base (1.31+nmu1) ... 90s Selecting previously unselected package xml-core. 90s Preparing to unpack .../009-xml-core_0.19build1_all.deb ... 90s Unpacking xml-core (0.19build1) ... 90s Selecting previously unselected package docutils-common. 90s Preparing to unpack .../010-docutils-common_0.22.4+dfsg-1_all.deb ... 90s Unpacking docutils-common (0.22.4+dfsg-1) ... 90s Selecting previously unselected package fonts-dejavu-mono. 90s Preparing to unpack .../011-fonts-dejavu-mono_2.37-8build1_all.deb ... 90s Unpacking fonts-dejavu-mono (2.37-8build1) ... 90s Selecting previously unselected package fonts-dejavu-core. 90s Preparing to unpack .../012-fonts-dejavu-core_2.37-8build1_all.deb ... 90s Unpacking fonts-dejavu-core (2.37-8build1) ... 90s Selecting previously unselected package fontconfig-config. 90s Preparing to unpack .../013-fontconfig-config_2.15.0-2.4ubuntu1_arm64.deb ... 91s Unpacking fontconfig-config (2.15.0-2.4ubuntu1) ... 91s Selecting previously unselected package libfontconfig1:arm64. 91s Preparing to unpack .../014-libfontconfig1_2.15.0-2.4ubuntu1_arm64.deb ... 91s Unpacking libfontconfig1:arm64 (2.15.0-2.4ubuntu1) ... 91s Selecting previously unselected package fontconfig. 91s Preparing to unpack .../015-fontconfig_2.15.0-2.4ubuntu1_arm64.deb ... 91s Unpacking fontconfig (2.15.0-2.4ubuntu1) ... 91s Selecting previously unselected package libgomp1:arm64. 91s Preparing to unpack .../016-libgomp1_15.2.0-11ubuntu1_arm64.deb ... 91s Unpacking libgomp1:arm64 (15.2.0-11ubuntu1) ... 91s Selecting previously unselected package gettext. 91s Preparing to unpack .../017-gettext_0.23.2-1_arm64.deb ... 91s Unpacking gettext (0.23.2-1) ... 91s Selecting previously unselected package libcdt6:arm64. 91s Preparing to unpack .../018-libcdt6_14.1.1-2ubuntu2_arm64.deb ... 91s Unpacking libcdt6:arm64 (14.1.1-2ubuntu2) ... 91s Selecting previously unselected package libcgraph8:arm64. 91s Preparing to unpack .../019-libcgraph8_14.1.1-2ubuntu2_arm64.deb ... 91s Unpacking libcgraph8:arm64 (14.1.1-2ubuntu2) ... 91s Selecting previously unselected package libltdl7:arm64. 91s Preparing to unpack .../020-libltdl7_2.5.4-9_arm64.deb ... 91s Unpacking libltdl7:arm64 (2.5.4-9) ... 91s Selecting previously unselected package libpathplan4:arm64. 91s Preparing to unpack .../021-libpathplan4_14.1.1-2ubuntu2_arm64.deb ... 91s Unpacking libpathplan4:arm64 (14.1.1-2ubuntu2) ... 91s Selecting previously unselected package libxdot4:arm64. 91s Preparing to unpack .../022-libxdot4_14.1.1-2ubuntu2_arm64.deb ... 91s Unpacking libxdot4:arm64 (14.1.1-2ubuntu2) ... 91s Selecting previously unselected package libgvc7:arm64. 91s Preparing to unpack .../023-libgvc7_14.1.1-2ubuntu2_arm64.deb ... 91s Unpacking libgvc7:arm64 (14.1.1-2ubuntu2) ... 91s Selecting previously unselected package libgvpr2:arm64. 91s Preparing to unpack .../024-libgvpr2_14.1.1-2ubuntu2_arm64.deb ... 91s Unpacking libgvpr2:arm64 (14.1.1-2ubuntu2) ... 91s Selecting previously unselected package libpixman-1-0:arm64. 91s Preparing to unpack .../025-libpixman-1-0_0.46.4-1_arm64.deb ... 91s Unpacking libpixman-1-0:arm64 (0.46.4-1) ... 91s Selecting previously unselected package libxcb-render0:arm64. 91s Preparing to unpack .../026-libxcb-render0_1.17.0-2build1_arm64.deb ... 91s Unpacking libxcb-render0:arm64 (1.17.0-2build1) ... 91s Selecting previously unselected package libxcb-shm0:arm64. 91s Preparing to unpack .../027-libxcb-shm0_1.17.0-2build1_arm64.deb ... 91s Unpacking libxcb-shm0:arm64 (1.17.0-2build1) ... 91s Selecting previously unselected package libxrender1:arm64. 91s Preparing to unpack .../028-libxrender1_1%3a0.9.12-1_arm64.deb ... 91s Unpacking libxrender1:arm64 (1:0.9.12-1) ... 91s Selecting previously unselected package libcairo2:arm64. 91s Preparing to unpack .../029-libcairo2_1.18.4-3_arm64.deb ... 91s Unpacking libcairo2:arm64 (1.18.4-3) ... 91s Selecting previously unselected package libsharpyuv0:arm64. 91s Preparing to unpack .../030-libsharpyuv0_1.5.0-0.1build1_arm64.deb ... 91s Unpacking libsharpyuv0:arm64 (1.5.0-0.1build1) ... 91s Selecting previously unselected package libaom3:arm64. 91s Preparing to unpack .../031-libaom3_3.13.1-2_arm64.deb ... 91s Unpacking libaom3:arm64 (3.13.1-2) ... 91s Selecting previously unselected package libheif-plugin-aomdec:arm64. 91s Preparing to unpack .../032-libheif-plugin-aomdec_1.21.2-1_arm64.deb ... 91s Unpacking libheif-plugin-aomdec:arm64 (1.21.2-1) ... 91s Selecting previously unselected package libde265-0:arm64. 91s Preparing to unpack .../033-libde265-0_1.0.16-1build1_arm64.deb ... 91s Unpacking libde265-0:arm64 (1.0.16-1build1) ... 91s Selecting previously unselected package libheif-plugin-libde265:arm64. 91s Preparing to unpack .../034-libheif-plugin-libde265_1.21.2-1_arm64.deb ... 91s Unpacking libheif-plugin-libde265:arm64 (1.21.2-1) ... 91s Selecting previously unselected package libheif1:arm64. 92s Preparing to unpack .../035-libheif1_1.21.2-1_arm64.deb ... 92s Unpacking libheif1:arm64 (1.21.2-1) ... 92s Selecting previously unselected package libimagequant0:arm64. 92s Preparing to unpack .../036-libimagequant0_2.18.0-1build1_arm64.deb ... 92s Unpacking libimagequant0:arm64 (2.18.0-1build1) ... 92s Selecting previously unselected package libjpeg-turbo8:arm64. 92s Preparing to unpack .../037-libjpeg-turbo8_2.1.5-4ubuntu2_arm64.deb ... 92s Unpacking libjpeg-turbo8:arm64 (2.1.5-4ubuntu2) ... 92s Selecting previously unselected package libjpeg8:arm64. 92s Preparing to unpack .../038-libjpeg8_8c-2ubuntu11_arm64.deb ... 92s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 92s Selecting previously unselected package libdeflate0:arm64. 92s Preparing to unpack .../039-libdeflate0_1.23-2_arm64.deb ... 92s Unpacking libdeflate0:arm64 (1.23-2) ... 92s Selecting previously unselected package libjbig0:arm64. 92s Preparing to unpack .../040-libjbig0_2.1-6.1ubuntu3_arm64.deb ... 92s Unpacking libjbig0:arm64 (2.1-6.1ubuntu3) ... 92s Selecting previously unselected package liblerc4:arm64. 92s Preparing to unpack .../041-liblerc4_4.0.0+ds-5ubuntu2_arm64.deb ... 92s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu2) ... 92s Selecting previously unselected package libwebp7:arm64. 92s Preparing to unpack .../042-libwebp7_1.5.0-0.1build1_arm64.deb ... 92s Unpacking libwebp7:arm64 (1.5.0-0.1build1) ... 92s Selecting previously unselected package libtiff6:arm64. 92s Preparing to unpack .../043-libtiff6_4.7.0-3ubuntu3_arm64.deb ... 92s Unpacking libtiff6:arm64 (4.7.0-3ubuntu3) ... 92s Selecting previously unselected package libxpm4:arm64. 92s Preparing to unpack .../044-libxpm4_1%3a3.5.17-1build3_arm64.deb ... 92s Unpacking libxpm4:arm64 (1:3.5.17-1build3) ... 92s Selecting previously unselected package libgd3:arm64. 92s Preparing to unpack .../045-libgd3_2.3.3-13ubuntu1_arm64.deb ... 92s Unpacking libgd3:arm64 (2.3.3-13ubuntu1) ... 92s Selecting previously unselected package libgvplugin-gd8:arm64. 92s Preparing to unpack .../046-libgvplugin-gd8_14.1.1-2ubuntu2_arm64.deb ... 92s Unpacking libgvplugin-gd8:arm64 (14.1.1-2ubuntu2) ... 92s Selecting previously unselected package libgraphite2-3:arm64. 92s Preparing to unpack .../047-libgraphite2-3_1.3.14-11ubuntu1_arm64.deb ... 92s Unpacking libgraphite2-3:arm64 (1.3.14-11ubuntu1) ... 92s Selecting previously unselected package libharfbuzz0b:arm64. 92s Preparing to unpack .../048-libharfbuzz0b_12.3.0-4_arm64.deb ... 92s Unpacking libharfbuzz0b:arm64 (12.3.0-4) ... 92s Selecting previously unselected package libthai-data. 92s Preparing to unpack .../049-libthai-data_0.1.30-1_all.deb ... 92s Unpacking libthai-data (0.1.30-1) ... 92s Selecting previously unselected package libdatrie1:arm64. 92s Preparing to unpack .../050-libdatrie1_0.2.14-1_arm64.deb ... 92s Unpacking libdatrie1:arm64 (0.2.14-1) ... 92s Selecting previously unselected package libthai0:arm64. 92s Preparing to unpack .../051-libthai0_0.1.30-1_arm64.deb ... 92s Unpacking libthai0:arm64 (0.1.30-1) ... 92s Selecting previously unselected package libpango-1.0-0:arm64. 92s Preparing to unpack .../052-libpango-1.0-0_1.56.4-1_arm64.deb ... 92s Unpacking libpango-1.0-0:arm64 (1.56.4-1) ... 92s Selecting previously unselected package libpangoft2-1.0-0:arm64. 92s Preparing to unpack .../053-libpangoft2-1.0-0_1.56.4-1_arm64.deb ... 92s Unpacking libpangoft2-1.0-0:arm64 (1.56.4-1) ... 92s Selecting previously unselected package libpangocairo-1.0-0:arm64. 92s Preparing to unpack .../054-libpangocairo-1.0-0_1.56.4-1_arm64.deb ... 92s Unpacking libpangocairo-1.0-0:arm64 (1.56.4-1) ... 92s Selecting previously unselected package libgvplugin-pango8:arm64. 92s Preparing to unpack .../055-libgvplugin-pango8_14.1.1-2ubuntu2_arm64.deb ... 92s Unpacking libgvplugin-pango8:arm64 (14.1.1-2ubuntu2) ... 92s Selecting previously unselected package graphviz. 92s Preparing to unpack .../056-graphviz_14.1.1-2ubuntu2_arm64.deb ... 92s Unpacking graphviz (14.1.1-2ubuntu2) ... 92s Selecting previously unselected package libaec0:arm64. 92s Preparing to unpack .../057-libaec0_1.1.4-2_arm64.deb ... 92s Unpacking libaec0:arm64 (1.1.4-2) ... 92s Selecting previously unselected package libsz2:arm64. 93s Preparing to unpack .../058-libsz2_1.1.4-2_arm64.deb ... 93s Unpacking libsz2:arm64 (1.1.4-2) ... 93s Selecting previously unselected package libhdf5-310:arm64. 93s Preparing to unpack .../059-libhdf5-310_1.14.5+repack-4_arm64.deb ... 93s Unpacking libhdf5-310:arm64 (1.14.5+repack-4) ... 93s Selecting previously unselected package libhdf5-hl-310:arm64. 93s Preparing to unpack .../060-libhdf5-hl-310_1.14.5+repack-4_arm64.deb ... 93s Unpacking libhdf5-hl-310:arm64 (1.14.5+repack-4) ... 93s Selecting previously unselected package libjs-jquery. 93s Preparing to unpack .../061-libjs-jquery_3.7.1+dfsg+~3.5.33-1build1_all.deb ... 93s Unpacking libjs-jquery (3.7.1+dfsg+~3.5.33-1build1) ... 93s Selecting previously unselected package libjs-underscore. 93s Preparing to unpack .../062-libjs-underscore_1.13.7~dfsg+~1.13.0-1_all.deb ... 93s Unpacking libjs-underscore (1.13.7~dfsg+~1.13.0-1) ... 93s Selecting previously unselected package libjson-perl. 93s Preparing to unpack .../063-libjson-perl_4.10000-1_all.deb ... 93s Unpacking libjson-perl (4.10000-1) ... 93s Selecting previously unselected package liblzf1:arm64. 93s Preparing to unpack .../064-liblzf1_3.6-4build1_arm64.deb ... 93s Unpacking liblzf1:arm64 (3.6-4build1) ... 93s Selecting previously unselected package libqhull-r8.0:arm64. 93s Preparing to unpack .../065-libqhull-r8.0_2020.2-8_arm64.deb ... 93s Unpacking libqhull-r8.0:arm64 (2020.2-8) ... 93s Selecting previously unselected package libxslt1.1:arm64. 93s Preparing to unpack .../066-libxslt1.1_1.1.43-0.3_arm64.deb ... 93s Unpacking libxslt1.1:arm64 (1.1.43-0.3) ... 93s Selecting previously unselected package python-nipype-doc. 93s Preparing to unpack .../067-python-nipype-doc_1.10.0-1_all.deb ... 93s Unpacking python-nipype-doc (1.10.0-1) ... 93s Selecting previously unselected package python3-acres. 93s Preparing to unpack .../068-python3-acres_0.5.0-2_all.deb ... 93s Unpacking python3-acres (0.5.0-2) ... 93s Selecting previously unselected package python3-all. 93s Preparing to unpack .../069-python3-all_3.14.2-1_arm64.deb ... 93s Unpacking python3-all (3.14.2-1) ... 93s Selecting previously unselected package python3-ci-info. 93s Preparing to unpack .../070-python3-ci-info_0.3.0-1build1_all.deb ... 93s Unpacking python3-ci-info (0.3.0-1build1) ... 93s Selecting previously unselected package python3-click. 93s Preparing to unpack .../071-python3-click_8.2.0+0.really.8.1.8-1build1_all.deb ... 93s Unpacking python3-click (8.2.0+0.really.8.1.8-1build1) ... 93s Selecting previously unselected package python3-decorator. 93s Preparing to unpack .../072-python3-decorator_5.2.1-2_all.deb ... 93s Unpacking python3-decorator (5.2.1-2) ... 93s Selecting previously unselected package python3-jsonpickle. 93s Preparing to unpack .../073-python3-jsonpickle_4.0.2+dfsg-2_all.deb ... 93s Unpacking python3-jsonpickle (4.0.2+dfsg-2) ... 93s Selecting previously unselected package python3-orderly-set. 93s Preparing to unpack .../074-python3-orderly-set_5.5.0-2_all.deb ... 93s Unpacking python3-orderly-set (5.5.0-2) ... 93s Selecting previously unselected package python3-deepdiff. 93s Preparing to unpack .../075-python3-deepdiff_8.6.1-1_all.deb ... 93s Unpacking python3-deepdiff (8.6.1-1) ... 93s Selecting previously unselected package python3-defusedxml. 93s Preparing to unpack .../076-python3-defusedxml_0.7.1-3build1_all.deb ... 93s Unpacking python3-defusedxml (0.7.1-3build1) ... 93s Selecting previously unselected package python3-h5py-serial. 94s Preparing to unpack .../077-python3-h5py-serial_3.15.1-4_arm64.deb ... 94s Unpacking python3-h5py-serial (3.15.1-4) ... 94s Selecting previously 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nipype/interfaces/fsl/tests/test_auto_ImageStats.py::test_ImageStats_outputs PASSED [ 44%] 167s nipype/interfaces/fsl/tests/test_auto_InvWarp.py::test_InvWarp_inputs PASSED [ 44%] 167s nipype/interfaces/fsl/tests/test_auto_InvWarp.py::test_InvWarp_outputs PASSED [ 44%] 167s nipype/interfaces/fsl/tests/test_auto_IsotropicSmooth.py::test_IsotropicSmooth_inputs PASSED [ 44%] 167s nipype/interfaces/fsl/tests/test_auto_IsotropicSmooth.py::test_IsotropicSmooth_outputs PASSED [ 44%] 167s nipype/interfaces/fsl/tests/test_auto_L2Model.py::test_L2Model_inputs PASSED [ 44%] 167s nipype/interfaces/fsl/tests/test_auto_L2Model.py::test_L2Model_outputs PASSED [ 44%] 167s nipype/interfaces/fsl/tests/test_auto_Level1Design.py::test_Level1Design_inputs PASSED [ 44%] 167s nipype/interfaces/fsl/tests/test_auto_Level1Design.py::test_Level1Design_outputs PASSED [ 44%] 167s nipype/interfaces/fsl/tests/test_auto_MCFLIRT.py::test_MCFLIRT_inputs PASSED [ 44%] 167s nipype/interfaces/fsl/tests/test_auto_MCFLIRT.py::test_MCFLIRT_outputs PASSED [ 44%] 167s nipype/interfaces/fsl/tests/test_auto_MELODIC.py::test_MELODIC_inputs PASSED [ 44%] 167s nipype/interfaces/fsl/tests/test_auto_MELODIC.py::test_MELODIC_outputs PASSED [ 45%] 167s nipype/interfaces/fsl/tests/test_auto_MakeDyadicVectors.py::test_MakeDyadicVectors_inputs PASSED [ 45%] 167s nipype/interfaces/fsl/tests/test_auto_MakeDyadicVectors.py::test_MakeDyadicVectors_outputs PASSED [ 45%] 167s nipype/interfaces/fsl/tests/test_auto_MathsCommand.py::test_MathsCommand_inputs PASSED [ 45%] 167s nipype/interfaces/fsl/tests/test_auto_MathsCommand.py::test_MathsCommand_outputs PASSED [ 45%] 167s nipype/interfaces/fsl/tests/test_auto_MaxImage.py::test_MaxImage_inputs PASSED [ 45%] 167s nipype/interfaces/fsl/tests/test_auto_MaxImage.py::test_MaxImage_outputs PASSED [ 45%] 167s nipype/interfaces/fsl/tests/test_auto_MaxnImage.py::test_MaxnImage_inputs PASSED [ 45%] 167s nipype/interfaces/fsl/tests/test_auto_MaxnImage.py::test_MaxnImage_outputs PASSED [ 45%] 167s nipype/interfaces/fsl/tests/test_auto_MeanImage.py::test_MeanImage_inputs PASSED [ 45%] 167s nipype/interfaces/fsl/tests/test_auto_MeanImage.py::test_MeanImage_outputs PASSED [ 45%] 167s nipype/interfaces/fsl/tests/test_auto_MedianImage.py::test_MedianImage_inputs PASSED [ 45%] 167s nipype/interfaces/fsl/tests/test_auto_MedianImage.py::test_MedianImage_outputs PASSED [ 45%] 167s nipype/interfaces/fsl/tests/test_auto_Merge.py::test_Merge_inputs PASSED [ 45%] 167s nipype/interfaces/fsl/tests/test_auto_Merge.py::test_Merge_outputs PASSED [ 45%] 167s nipype/interfaces/fsl/tests/test_auto_MinImage.py::test_MinImage_inputs PASSED [ 45%] 167s nipype/interfaces/fsl/tests/test_auto_MinImage.py::test_MinImage_outputs PASSED [ 45%] 167s nipype/interfaces/fsl/tests/test_auto_MotionOutliers.py::test_MotionOutliers_inputs PASSED [ 45%] 167s nipype/interfaces/fsl/tests/test_auto_MotionOutliers.py::test_MotionOutliers_outputs PASSED [ 45%] 167s nipype/interfaces/fsl/tests/test_auto_MultiImageMaths.py::test_MultiImageMaths_inputs PASSED [ 45%] 167s nipype/interfaces/fsl/tests/test_auto_MultiImageMaths.py::test_MultiImageMaths_outputs PASSED [ 45%] 167s nipype/interfaces/fsl/tests/test_auto_MultipleRegressDesign.py::test_MultipleRegressDesign_inputs PASSED [ 45%] 167s nipype/interfaces/fsl/tests/test_auto_MultipleRegressDesign.py::test_MultipleRegressDesign_outputs PASSED [ 45%] 167s nipype/interfaces/fsl/tests/test_auto_Overlay.py::test_Overlay_inputs PASSED [ 45%] 167s nipype/interfaces/fsl/tests/test_auto_Overlay.py::test_Overlay_outputs PASSED [ 45%] 167s nipype/interfaces/fsl/tests/test_auto_PRELUDE.py::test_PRELUDE_inputs PASSED [ 45%] 167s nipype/interfaces/fsl/tests/test_auto_PRELUDE.py::test_PRELUDE_outputs PASSED [ 45%] 167s nipype/interfaces/fsl/tests/test_auto_PercentileImage.py::test_PercentileImage_inputs PASSED [ 45%] 167s nipype/interfaces/fsl/tests/test_auto_PercentileImage.py::test_PercentileImage_outputs PASSED [ 45%] 167s nipype/interfaces/fsl/tests/test_auto_PlotMotionParams.py::test_PlotMotionParams_inputs PASSED [ 45%] 167s nipype/interfaces/fsl/tests/test_auto_PlotMotionParams.py::test_PlotMotionParams_outputs PASSED [ 46%] 167s nipype/interfaces/fsl/tests/test_auto_PlotTimeSeries.py::test_PlotTimeSeries_inputs PASSED [ 46%] 167s nipype/interfaces/fsl/tests/test_auto_PlotTimeSeries.py::test_PlotTimeSeries_outputs PASSED [ 46%] 167s nipype/interfaces/fsl/tests/test_auto_PowerSpectrum.py::test_PowerSpectrum_inputs PASSED [ 46%] 167s nipype/interfaces/fsl/tests/test_auto_PowerSpectrum.py::test_PowerSpectrum_outputs PASSED [ 46%] 167s nipype/interfaces/fsl/tests/test_auto_PrepareFieldmap.py::test_PrepareFieldmap_inputs PASSED [ 46%] 167s nipype/interfaces/fsl/tests/test_auto_PrepareFieldmap.py::test_PrepareFieldmap_outputs PASSED [ 46%] 167s nipype/interfaces/fsl/tests/test_auto_ProbTrackX.py::test_ProbTrackX_inputs PASSED [ 46%] 167s nipype/interfaces/fsl/tests/test_auto_ProbTrackX.py::test_ProbTrackX_outputs PASSED [ 46%] 167s nipype/interfaces/fsl/tests/test_auto_ProbTrackX2.py::test_ProbTrackX2_inputs PASSED [ 46%] 167s nipype/interfaces/fsl/tests/test_auto_ProbTrackX2.py::test_ProbTrackX2_outputs PASSED [ 46%] 167s nipype/interfaces/fsl/tests/test_auto_ProjThresh.py::test_ProjThresh_inputs PASSED [ 46%] 167s nipype/interfaces/fsl/tests/test_auto_ProjThresh.py::test_ProjThresh_outputs PASSED [ 46%] 167s nipype/interfaces/fsl/tests/test_auto_Randomise.py::test_Randomise_inputs PASSED [ 46%] 167s nipype/interfaces/fsl/tests/test_auto_Randomise.py::test_Randomise_outputs PASSED [ 46%] 167s nipype/interfaces/fsl/tests/test_auto_Reorient2Std.py::test_Reorient2Std_inputs PASSED [ 46%] 167s nipype/interfaces/fsl/tests/test_auto_Reorient2Std.py::test_Reorient2Std_outputs PASSED [ 46%] 167s nipype/interfaces/fsl/tests/test_auto_RobustFOV.py::test_RobustFOV_inputs PASSED [ 46%] 167s nipype/interfaces/fsl/tests/test_auto_RobustFOV.py::test_RobustFOV_outputs PASSED [ 46%] 167s nipype/interfaces/fsl/tests/test_auto_SMM.py::test_SMM_inputs PASSED [ 46%] 167s nipype/interfaces/fsl/tests/test_auto_SMM.py::test_SMM_outputs PASSED [ 46%] 167s nipype/interfaces/fsl/tests/test_auto_SUSAN.py::test_SUSAN_inputs PASSED [ 46%] 167s nipype/interfaces/fsl/tests/test_auto_SUSAN.py::test_SUSAN_outputs PASSED [ 46%] 167s nipype/interfaces/fsl/tests/test_auto_SigLoss.py::test_SigLoss_inputs PASSED [ 46%] 167s nipype/interfaces/fsl/tests/test_auto_SigLoss.py::test_SigLoss_outputs PASSED [ 46%] 167s nipype/interfaces/fsl/tests/test_auto_Slice.py::test_Slice_inputs PASSED [ 46%] 167s nipype/interfaces/fsl/tests/test_auto_Slice.py::test_Slice_outputs PASSED [ 46%] 167s nipype/interfaces/fsl/tests/test_auto_SliceTimer.py::test_SliceTimer_inputs PASSED [ 46%] 167s 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nipype/interfaces/fsl/tests/test_auto_Split.py::test_Split_outputs PASSED [ 47%] 167s nipype/interfaces/fsl/tests/test_auto_StdImage.py::test_StdImage_inputs PASSED [ 47%] 167s nipype/interfaces/fsl/tests/test_auto_StdImage.py::test_StdImage_outputs PASSED [ 47%] 167s nipype/interfaces/fsl/tests/test_auto_SwapDimensions.py::test_SwapDimensions_inputs PASSED [ 47%] 167s nipype/interfaces/fsl/tests/test_auto_SwapDimensions.py::test_SwapDimensions_outputs PASSED [ 47%] 167s nipype/interfaces/fsl/tests/test_auto_TOPUP.py::test_TOPUP_inputs PASSED [ 47%] 167s nipype/interfaces/fsl/tests/test_auto_TOPUP.py::test_TOPUP_outputs PASSED [ 47%] 167s nipype/interfaces/fsl/tests/test_auto_TemporalFilter.py::test_TemporalFilter_inputs PASSED [ 47%] 167s nipype/interfaces/fsl/tests/test_auto_TemporalFilter.py::test_TemporalFilter_outputs PASSED [ 47%] 167s nipype/interfaces/fsl/tests/test_auto_Text2Vest.py::test_Text2Vest_inputs PASSED [ 47%] 167s nipype/interfaces/fsl/tests/test_auto_Text2Vest.py::test_Text2Vest_outputs PASSED [ 47%] 167s nipype/interfaces/fsl/tests/test_auto_Threshold.py::test_Threshold_inputs PASSED [ 47%] 167s nipype/interfaces/fsl/tests/test_auto_Threshold.py::test_Threshold_outputs PASSED [ 47%] 167s nipype/interfaces/fsl/tests/test_auto_TractSkeleton.py::test_TractSkeleton_inputs PASSED [ 47%] 167s nipype/interfaces/fsl/tests/test_auto_TractSkeleton.py::test_TractSkeleton_outputs PASSED [ 47%] 167s nipype/interfaces/fsl/tests/test_auto_Training.py::test_Training_inputs PASSED [ 47%] 167s nipype/interfaces/fsl/tests/test_auto_Training.py::test_Training_outputs PASSED [ 47%] 167s nipype/interfaces/fsl/tests/test_auto_TrainingSetCreator.py::test_TrainingSetCreator_inputs PASSED [ 47%] 167s nipype/interfaces/fsl/tests/test_auto_TrainingSetCreator.py::test_TrainingSetCreator_outputs PASSED [ 47%] 167s nipype/interfaces/fsl/tests/test_auto_UnaryMaths.py::test_UnaryMaths_inputs PASSED [ 47%] 167s nipype/interfaces/fsl/tests/test_auto_UnaryMaths.py::test_UnaryMaths_outputs PASSED [ 47%] 167s nipype/interfaces/fsl/tests/test_auto_VecReg.py::test_VecReg_inputs PASSED [ 47%] 167s nipype/interfaces/fsl/tests/test_auto_VecReg.py::test_VecReg_outputs PASSED [ 47%] 167s nipype/interfaces/fsl/tests/test_auto_Vest2Text.py::test_Vest2Text_inputs PASSED [ 48%] 167s nipype/interfaces/fsl/tests/test_auto_Vest2Text.py::test_Vest2Text_outputs PASSED [ 48%] 167s nipype/interfaces/fsl/tests/test_auto_WarpPoints.py::test_WarpPoints_inputs PASSED [ 48%] 167s nipype/interfaces/fsl/tests/test_auto_WarpPoints.py::test_WarpPoints_outputs PASSED [ 48%] 167s nipype/interfaces/fsl/tests/test_auto_WarpPointsFromStd.py::test_WarpPointsFromStd_inputs PASSED [ 48%] 167s nipype/interfaces/fsl/tests/test_auto_WarpPointsFromStd.py::test_WarpPointsFromStd_outputs PASSED [ 48%] 167s nipype/interfaces/fsl/tests/test_auto_WarpPointsToStd.py::test_WarpPointsToStd_inputs PASSED [ 48%] 167s nipype/interfaces/fsl/tests/test_auto_WarpPointsToStd.py::test_WarpPointsToStd_outputs PASSED [ 48%] 167s nipype/interfaces/fsl/tests/test_auto_WarpUtils.py::test_WarpUtils_inputs PASSED [ 48%] 167s nipype/interfaces/fsl/tests/test_auto_WarpUtils.py::test_WarpUtils_outputs PASSED [ 48%] 167s nipype/interfaces/fsl/tests/test_auto_XFibres5.py::test_XFibres5_inputs PASSED [ 48%] 167s nipype/interfaces/fsl/tests/test_auto_XFibres5.py::test_XFibres5_outputs PASSED [ 48%] 167s nipype/interfaces/fsl/tests/test_base.py::test_fslversion SKIPPED (f...) [ 48%] 167s nipype/interfaces/fsl/tests/test_base.py::test_fsloutputtype SKIPPED [ 48%] 167s nipype/interfaces/fsl/tests/test_base.py::test_outputtype_to_ext PASSED [ 48%] 167s nipype/interfaces/fsl/tests/test_base.py::test_FSLCommand SKIPPED (f...) [ 48%] 167s nipype/interfaces/fsl/tests/test_base.py::test_FSLCommand2 SKIPPED (...) [ 48%] 167s nipype/interfaces/fsl/tests/test_base.py::test_gen_fname[args0-desired_name0] SKIPPED [ 48%] 167s nipype/interfaces/fsl/tests/test_base.py::test_gen_fname[args1-desired_name1] SKIPPED [ 48%] 167s nipype/interfaces/fsl/tests/test_base.py::test_gen_fname[args2-desired_name2] SKIPPED [ 48%] 167s nipype/interfaces/fsl/tests/test_base.py::test_gen_fname[args3-desired_name3] SKIPPED [ 48%] 167s nipype/interfaces/fsl/tests/test_dti.py::test_dtifit2 SKIPPED (fsl i...) [ 48%] 167s nipype/interfaces/fsl/tests/test_dti.py::test_randomise2 XFAIL (Thes...) [ 48%] 167s nipype/interfaces/fsl/tests/test_dti.py::test_Randomise_parallel XFAIL [ 48%] 167s nipype/interfaces/fsl/tests/test_dti.py::test_Proj_thresh XFAIL (The...) [ 48%] 167s nipype/interfaces/fsl/tests/test_dti.py::test_Vec_reg XFAIL (These t...) [ 48%] 167s nipype/interfaces/fsl/tests/test_dti.py::test_Find_the_biggest XFAIL [ 48%] 167s nipype/interfaces/fsl/tests/test_dti.py::test_tbss_skeleton SKIPPED [ 48%] 167s nipype/interfaces/fsl/tests/test_dti.py::test_distancemap SKIPPED (f...) [ 48%] 167s nipype/interfaces/fsl/tests/test_epi.py::test_eddy_correct2 SKIPPED [ 48%] 167s nipype/interfaces/fsl/tests/test_maths.py::test_maths_base[None] SKIPPED [ 49%] 167s nipype/interfaces/fsl/tests/test_maths.py::test_maths_base[GIFTI] SKIPPED [ 49%] 167s nipype/interfaces/fsl/tests/test_maths.py::test_maths_base[NIFTI] SKIPPED [ 49%] 167s nipype/interfaces/fsl/tests/test_maths.py::test_maths_base[NIFTI_GZ] SKIPPED [ 49%] 167s nipype/interfaces/fsl/tests/test_maths.py::test_maths_base[NIFTI_PAIR] SKIPPED [ 49%] 167s nipype/interfaces/fsl/tests/test_maths.py::test_maths_base[NIFTI_PAIR_GZ] SKIPPED [ 49%] 167s nipype/interfaces/fsl/tests/test_maths.py::test_changedt[None] SKIPPED [ 49%] 167s nipype/interfaces/fsl/tests/test_maths.py::test_changedt[GIFTI] SKIPPED [ 49%] 167s nipype/interfaces/fsl/tests/test_maths.py::test_changedt[NIFTI] SKIPPED [ 49%] 167s nipype/interfaces/fsl/tests/test_maths.py::test_changedt[NIFTI_GZ] SKIPPED [ 49%] 167s nipype/interfaces/fsl/tests/test_maths.py::test_changedt[NIFTI_PAIR] SKIPPED [ 49%] 167s nipype/interfaces/fsl/tests/test_maths.py::test_changedt[NIFTI_PAIR_GZ] SKIPPED [ 49%] 167s nipype/interfaces/fsl/tests/test_maths.py::test_threshold[None] SKIPPED [ 49%] 167s nipype/interfaces/fsl/tests/test_maths.py::test_threshold[GIFTI] SKIPPED [ 49%] 167s nipype/interfaces/fsl/tests/test_maths.py::test_threshold[NIFTI] SKIPPED [ 49%] 167s nipype/interfaces/fsl/tests/test_maths.py::test_threshold[NIFTI_GZ] SKIPPED [ 49%] 167s nipype/interfaces/fsl/tests/test_maths.py::test_threshold[NIFTI_PAIR] SKIPPED [ 49%] 167s nipype/interfaces/fsl/tests/test_maths.py::test_threshold[NIFTI_PAIR_GZ] SKIPPED [ 49%] 167s nipype/interfaces/fsl/tests/test_maths.py::test_meanimage[None] SKIPPED [ 49%] 167s nipype/interfaces/fsl/tests/test_maths.py::test_meanimage[GIFTI] SKIPPED [ 49%] 167s nipype/interfaces/fsl/tests/test_maths.py::test_meanimage[NIFTI] SKIPPED [ 49%] 167s nipype/interfaces/fsl/tests/test_maths.py::test_meanimage[NIFTI_GZ] SKIPPED [ 49%] 167s nipype/interfaces/fsl/tests/test_maths.py::test_meanimage[NIFTI_PAIR] SKIPPED [ 49%] 167s nipype/interfaces/fsl/tests/test_maths.py::test_meanimage[NIFTI_PAIR_GZ] SKIPPED [ 49%] 167s nipype/interfaces/fsl/tests/test_maths.py::test_stdimage[None] SKIPPED [ 49%] 167s nipype/interfaces/fsl/tests/test_maths.py::test_stdimage[GIFTI] SKIPPED [ 49%] 167s nipype/interfaces/fsl/tests/test_maths.py::test_stdimage[NIFTI] SKIPPED [ 49%] 167s nipype/interfaces/fsl/tests/test_maths.py::test_stdimage[NIFTI_GZ] SKIPPED [ 49%] 167s nipype/interfaces/fsl/tests/test_maths.py::test_stdimage[NIFTI_PAIR] SKIPPED [ 49%] 167s nipype/interfaces/fsl/tests/test_maths.py::test_stdimage[NIFTI_PAIR_GZ] SKIPPED [ 49%] 167s nipype/interfaces/fsl/tests/test_maths.py::test_maximage[None] SKIPPED [ 50%] 167s nipype/interfaces/fsl/tests/test_maths.py::test_maximage[GIFTI] SKIPPED [ 50%] 167s nipype/interfaces/fsl/tests/test_maths.py::test_maximage[NIFTI] SKIPPED [ 50%] 167s nipype/interfaces/fsl/tests/test_maths.py::test_maximage[NIFTI_GZ] SKIPPED [ 50%] 167s nipype/interfaces/fsl/tests/test_maths.py::test_maximage[NIFTI_PAIR] SKIPPED [ 50%] 167s nipype/interfaces/fsl/tests/test_maths.py::test_maximage[NIFTI_PAIR_GZ] SKIPPED [ 50%] 167s nipype/interfaces/fsl/tests/test_maths.py::test_smooth[None] SKIPPED [ 50%] 167s nipype/interfaces/fsl/tests/test_maths.py::test_smooth[GIFTI] SKIPPED [ 50%] 167s nipype/interfaces/fsl/tests/test_maths.py::test_smooth[NIFTI] SKIPPED [ 50%] 167s nipype/interfaces/fsl/tests/test_maths.py::test_smooth[NIFTI_GZ] SKIPPED [ 50%] 167s nipype/interfaces/fsl/tests/test_maths.py::test_smooth[NIFTI_PAIR] SKIPPED [ 50%] 167s nipype/interfaces/fsl/tests/test_maths.py::test_smooth[NIFTI_PAIR_GZ] SKIPPED [ 50%] 167s nipype/interfaces/fsl/tests/test_maths.py::test_mask[None] SKIPPED (...) [ 50%] 167s nipype/interfaces/fsl/tests/test_maths.py::test_mask[GIFTI] SKIPPED [ 50%] 167s nipype/interfaces/fsl/tests/test_maths.py::test_mask[NIFTI] SKIPPED [ 50%] 167s nipype/interfaces/fsl/tests/test_maths.py::test_mask[NIFTI_GZ] SKIPPED [ 50%] 167s nipype/interfaces/fsl/tests/test_maths.py::test_mask[NIFTI_PAIR] SKIPPED [ 50%] 167s nipype/interfaces/fsl/tests/test_maths.py::test_mask[NIFTI_PAIR_GZ] SKIPPED [ 50%] 167s nipype/interfaces/fsl/tests/test_maths.py::test_dilation[None] SKIPPED [ 50%] 167s nipype/interfaces/fsl/tests/test_maths.py::test_dilation[GIFTI] SKIPPED [ 50%] 167s nipype/interfaces/fsl/tests/test_maths.py::test_dilation[NIFTI] SKIPPED [ 50%] 167s nipype/interfaces/fsl/tests/test_maths.py::test_dilation[NIFTI_GZ] SKIPPED [ 50%] 167s nipype/interfaces/fsl/tests/test_maths.py::test_dilation[NIFTI_PAIR] SKIPPED [ 50%] 167s nipype/interfaces/fsl/tests/test_maths.py::test_dilation[NIFTI_PAIR_GZ] SKIPPED [ 50%] 167s nipype/interfaces/fsl/tests/test_maths.py::test_erosion[None] SKIPPED [ 50%] 167s nipype/interfaces/fsl/tests/test_maths.py::test_erosion[GIFTI] SKIPPED [ 50%] 167s nipype/interfaces/fsl/tests/test_maths.py::test_erosion[NIFTI] SKIPPED [ 50%] 167s nipype/interfaces/fsl/tests/test_maths.py::test_erosion[NIFTI_GZ] SKIPPED [ 50%] 167s nipype/interfaces/fsl/tests/test_maths.py::test_erosion[NIFTI_PAIR] SKIPPED [ 50%] 167s nipype/interfaces/fsl/tests/test_maths.py::test_erosion[NIFTI_PAIR_GZ] SKIPPED [ 50%] 167s nipype/interfaces/fsl/tests/test_maths.py::test_spatial_filter[None] SKIPPED [ 51%] 167s nipype/interfaces/fsl/tests/test_maths.py::test_spatial_filter[GIFTI] SKIPPED [ 51%] 167s nipype/interfaces/fsl/tests/test_maths.py::test_spatial_filter[NIFTI] SKIPPED [ 51%] 167s nipype/interfaces/fsl/tests/test_maths.py::test_spatial_filter[NIFTI_GZ] SKIPPED [ 51%] 167s nipype/interfaces/fsl/tests/test_maths.py::test_spatial_filter[NIFTI_PAIR] SKIPPED [ 51%] 167s nipype/interfaces/fsl/tests/test_maths.py::test_spatial_filter[NIFTI_PAIR_GZ] SKIPPED [ 51%] 167s nipype/interfaces/fsl/tests/test_maths.py::test_unarymaths[None] SKIPPED [ 51%] 167s nipype/interfaces/fsl/tests/test_maths.py::test_unarymaths[GIFTI] SKIPPED [ 51%] 167s nipype/interfaces/fsl/tests/test_maths.py::test_unarymaths[NIFTI] SKIPPED [ 51%] 167s nipype/interfaces/fsl/tests/test_maths.py::test_unarymaths[NIFTI_GZ] SKIPPED [ 51%] 167s nipype/interfaces/fsl/tests/test_maths.py::test_unarymaths[NIFTI_PAIR] SKIPPED [ 51%] 167s nipype/interfaces/fsl/tests/test_maths.py::test_unarymaths[NIFTI_PAIR_GZ] SKIPPED [ 51%] 167s nipype/interfaces/fsl/tests/test_maths.py::test_binarymaths[None] SKIPPED [ 51%] 167s nipype/interfaces/fsl/tests/test_maths.py::test_binarymaths[GIFTI] SKIPPED [ 51%] 167s nipype/interfaces/fsl/tests/test_maths.py::test_binarymaths[NIFTI] SKIPPED [ 51%] 167s nipype/interfaces/fsl/tests/test_maths.py::test_binarymaths[NIFTI_GZ] SKIPPED [ 51%] 167s nipype/interfaces/fsl/tests/test_maths.py::test_binarymaths[NIFTI_PAIR] SKIPPED [ 51%] 167s nipype/interfaces/fsl/tests/test_maths.py::test_binarymaths[NIFTI_PAIR_GZ] SKIPPED [ 51%] 167s nipype/interfaces/fsl/tests/test_maths.py::test_multimaths[None] SKIPPED [ 51%] 167s nipype/interfaces/fsl/tests/test_maths.py::test_multimaths[GIFTI] SKIPPED [ 51%] 167s nipype/interfaces/fsl/tests/test_maths.py::test_multimaths[NIFTI] SKIPPED [ 51%] 167s nipype/interfaces/fsl/tests/test_maths.py::test_multimaths[NIFTI_GZ] SKIPPED [ 51%] 167s nipype/interfaces/fsl/tests/test_maths.py::test_multimaths[NIFTI_PAIR] SKIPPED [ 51%] 167s nipype/interfaces/fsl/tests/test_maths.py::test_multimaths[NIFTI_PAIR_GZ] SKIPPED [ 51%] 167s nipype/interfaces/fsl/tests/test_maths.py::test_tempfilt[None] SKIPPED [ 51%] 167s nipype/interfaces/fsl/tests/test_maths.py::test_tempfilt[GIFTI] SKIPPED [ 51%] 167s nipype/interfaces/fsl/tests/test_maths.py::test_tempfilt[NIFTI] SKIPPED [ 51%] 167s nipype/interfaces/fsl/tests/test_maths.py::test_tempfilt[NIFTI_GZ] SKIPPED [ 51%] 167s nipype/interfaces/fsl/tests/test_maths.py::test_tempfilt[NIFTI_PAIR] SKIPPED [ 51%] 167s nipype/interfaces/fsl/tests/test_maths.py::test_tempfilt[NIFTI_PAIR_GZ] SKIPPED [ 51%] 167s nipype/interfaces/fsl/tests/test_model.py::test_MultipleRegressDesign SKIPPED [ 52%] 167s nipype/interfaces/fsl/tests/test_preprocess.py::test_bet SKIPPED (fs...) [ 52%] 167s nipype/interfaces/fsl/tests/test_preprocess.py::test_fast SKIPPED (f...) [ 52%] 167s nipype/interfaces/fsl/tests/test_preprocess.py::test_fast_list_outputs SKIPPED [ 52%] 167s nipype/interfaces/fsl/tests/test_preprocess.py::test_flirt SKIPPED (...) [ 52%] 167s nipype/interfaces/fsl/tests/test_preprocess.py::test_mcflirt SKIPPED [ 52%] 167s nipype/interfaces/fsl/tests/test_preprocess.py::test_mcflirt_opt SKIPPED [ 52%] 167s nipype/interfaces/fsl/tests/test_preprocess.py::test_mcflirt_noinput SKIPPED [ 52%] 167s nipype/interfaces/fsl/tests/test_preprocess.py::test_fnirt SKIPPED (...) [ 52%] 167s nipype/interfaces/fsl/tests/test_preprocess.py::test_applywarp SKIPPED [ 52%] 167s nipype/interfaces/fsl/tests/test_preprocess.py::test_fugue[attr0-fmap_out_file] SKIPPED [ 52%] 167s nipype/interfaces/fsl/tests/test_preprocess.py::test_fugue[attr1-shift_out_file] SKIPPED [ 52%] 167s nipype/interfaces/fsl/tests/test_preprocess.py::test_fugue[attr2-unwarped_file] SKIPPED [ 52%] 167s nipype/interfaces/fsl/tests/test_preprocess.py::test_first_genfname SKIPPED [ 52%] 167s nipype/interfaces/fsl/tests/test_utils.py::test_fslroi[None] SKIPPED [ 52%] 167s nipype/interfaces/fsl/tests/test_utils.py::test_fslroi[GIFTI] SKIPPED [ 52%] 167s nipype/interfaces/fsl/tests/test_utils.py::test_fslroi[NIFTI] SKIPPED [ 52%] 167s nipype/interfaces/fsl/tests/test_utils.py::test_fslroi[NIFTI_GZ] SKIPPED [ 52%] 167s nipype/interfaces/fsl/tests/test_utils.py::test_fslroi[NIFTI_PAIR] SKIPPED [ 52%] 167s nipype/interfaces/fsl/tests/test_utils.py::test_fslroi[NIFTI_PAIR_GZ] SKIPPED [ 52%] 167s nipype/interfaces/fsl/tests/test_utils.py::test_fslmerge[None] SKIPPED [ 52%] 168s nipype/interfaces/fsl/tests/test_utils.py::test_fslmerge[GIFTI] SKIPPED [ 52%] 168s nipype/interfaces/fsl/tests/test_utils.py::test_fslmerge[NIFTI] SKIPPED [ 52%] 168s nipype/interfaces/fsl/tests/test_utils.py::test_fslmerge[NIFTI_GZ] SKIPPED [ 52%] 168s nipype/interfaces/fsl/tests/test_utils.py::test_fslmerge[NIFTI_PAIR] SKIPPED [ 52%] 168s nipype/interfaces/fsl/tests/test_utils.py::test_fslmerge[NIFTI_PAIR_GZ] SKIPPED [ 52%] 168s nipype/interfaces/fsl/tests/test_utils.py::test_fslmaths[None] SKIPPED [ 52%] 168s nipype/interfaces/fsl/tests/test_utils.py::test_fslmaths[GIFTI] SKIPPED [ 52%] 168s nipype/interfaces/fsl/tests/test_utils.py::test_fslmaths[NIFTI] SKIPPED [ 52%] 168s nipype/interfaces/fsl/tests/test_utils.py::test_fslmaths[NIFTI_GZ] SKIPPED [ 52%] 168s nipype/interfaces/fsl/tests/test_utils.py::test_fslmaths[NIFTI_PAIR] SKIPPED [ 53%] 168s nipype/interfaces/fsl/tests/test_utils.py::test_fslmaths[NIFTI_PAIR_GZ] SKIPPED [ 53%] 168s nipype/interfaces/fsl/tests/test_utils.py::test_overlay[None] SKIPPED [ 53%] 168s nipype/interfaces/fsl/tests/test_utils.py::test_overlay[GIFTI] SKIPPED [ 53%] 168s nipype/interfaces/fsl/tests/test_utils.py::test_overlay[NIFTI] SKIPPED [ 53%] 168s nipype/interfaces/fsl/tests/test_utils.py::test_overlay[NIFTI_GZ] SKIPPED [ 53%] 168s nipype/interfaces/fsl/tests/test_utils.py::test_overlay[NIFTI_PAIR] SKIPPED [ 53%] 168s nipype/interfaces/fsl/tests/test_utils.py::test_overlay[NIFTI_PAIR_GZ] SKIPPED [ 53%] 168s nipype/interfaces/fsl/tests/test_utils.py::test_slicer[None] SKIPPED [ 53%] 168s nipype/interfaces/fsl/tests/test_utils.py::test_slicer[GIFTI] SKIPPED [ 53%] 168s nipype/interfaces/fsl/tests/test_utils.py::test_slicer[NIFTI] SKIPPED [ 53%] 168s nipype/interfaces/fsl/tests/test_utils.py::test_slicer[NIFTI_GZ] SKIPPED [ 53%] 168s nipype/interfaces/fsl/tests/test_utils.py::test_slicer[NIFTI_PAIR] SKIPPED [ 53%] 168s nipype/interfaces/fsl/tests/test_utils.py::test_slicer[NIFTI_PAIR_GZ] SKIPPED [ 53%] 168s nipype/interfaces/fsl/tests/test_utils.py::test_plottimeseries[None] SKIPPED [ 53%] 168s nipype/interfaces/fsl/tests/test_utils.py::test_plottimeseries[GIFTI] SKIPPED [ 53%] 168s nipype/interfaces/fsl/tests/test_utils.py::test_plottimeseries[NIFTI] SKIPPED [ 53%] 168s nipype/interfaces/fsl/tests/test_utils.py::test_plottimeseries[NIFTI_GZ] SKIPPED [ 53%] 168s nipype/interfaces/fsl/tests/test_utils.py::test_plottimeseries[NIFTI_PAIR] SKIPPED [ 53%] 168s nipype/interfaces/fsl/tests/test_utils.py::test_plottimeseries[NIFTI_PAIR_GZ] SKIPPED [ 53%] 168s nipype/interfaces/fsl/tests/test_utils.py::test_plotmotionparams[None] SKIPPED [ 53%] 168s nipype/interfaces/fsl/tests/test_utils.py::test_plotmotionparams[GIFTI] SKIPPED [ 53%] 168s nipype/interfaces/fsl/tests/test_utils.py::test_plotmotionparams[NIFTI] SKIPPED [ 53%] 168s nipype/interfaces/fsl/tests/test_utils.py::test_plotmotionparams[NIFTI_GZ] SKIPPED [ 53%] 168s nipype/interfaces/fsl/tests/test_utils.py::test_plotmotionparams[NIFTI_PAIR] SKIPPED [ 53%] 168s nipype/interfaces/fsl/tests/test_utils.py::test_plotmotionparams[NIFTI_PAIR_GZ] SKIPPED [ 53%] 168s nipype/interfaces/fsl/tests/test_utils.py::test_convertxfm[None] SKIPPED [ 53%] 168s nipype/interfaces/fsl/tests/test_utils.py::test_convertxfm[GIFTI] SKIPPED [ 53%] 168s nipype/interfaces/fsl/tests/test_utils.py::test_convertxfm[NIFTI] SKIPPED [ 53%] 168s nipype/interfaces/fsl/tests/test_utils.py::test_convertxfm[NIFTI_GZ] SKIPPED [ 53%] 168s nipype/interfaces/fsl/tests/test_utils.py::test_convertxfm[NIFTI_PAIR] SKIPPED [ 53%] 168s nipype/interfaces/fsl/tests/test_utils.py::test_convertxfm[NIFTI_PAIR_GZ] SKIPPED [ 54%] 168s nipype/interfaces/fsl/tests/test_utils.py::test_swapdims[None] SKIPPED [ 54%] 168s nipype/interfaces/fsl/tests/test_utils.py::test_swapdims[GIFTI] SKIPPED [ 54%] 168s nipype/interfaces/fsl/tests/test_utils.py::test_swapdims[NIFTI] SKIPPED [ 54%] 168s nipype/interfaces/fsl/tests/test_utils.py::test_swapdims[NIFTI_GZ] SKIPPED [ 54%] 168s nipype/interfaces/fsl/tests/test_utils.py::test_swapdims[NIFTI_PAIR] SKIPPED [ 54%] 168s nipype/interfaces/fsl/tests/test_utils.py::test_swapdims[NIFTI_PAIR_GZ] SKIPPED [ 54%] 168s nipype/interfaces/fsl/utils.py::nipype.interfaces.fsl.utils.AvScale PASSED [ 54%] 168s nipype/interfaces/fsl/utils.py::nipype.interfaces.fsl.utils.Complex PASSED [ 54%] 168s nipype/interfaces/fsl/utils.py::nipype.interfaces.fsl.utils.ConvertWarp PASSED [ 54%] 168s nipype/interfaces/fsl/utils.py::nipype.interfaces.fsl.utils.ConvertXFM PASSED [ 54%] 168s nipype/interfaces/fsl/utils.py::nipype.interfaces.fsl.utils.ExtractROI PASSED [ 54%] 168s nipype/interfaces/fsl/utils.py::nipype.interfaces.fsl.utils.ImageMaths PASSED [ 54%] 168s nipype/interfaces/fsl/utils.py::nipype.interfaces.fsl.utils.ImageStats PASSED [ 54%] 168s nipype/interfaces/fsl/utils.py::nipype.interfaces.fsl.utils.InvWarp PASSED [ 54%] 168s nipype/interfaces/fsl/utils.py::nipype.interfaces.fsl.utils.Merge PASSED [ 54%] 168s nipype/interfaces/fsl/utils.py::nipype.interfaces.fsl.utils.MotionOutliers PASSED [ 54%] 168s nipype/interfaces/fsl/utils.py::nipype.interfaces.fsl.utils.Overlay PASSED [ 54%] 168s nipype/interfaces/fsl/utils.py::nipype.interfaces.fsl.utils.PlotMotionParams PASSED [ 54%] 168s nipype/interfaces/fsl/utils.py::nipype.interfaces.fsl.utils.PlotTimeSeries PASSED [ 54%] 168s nipype/interfaces/fsl/utils.py::nipype.interfaces.fsl.utils.PowerSpectrum PASSED [ 54%] 168s nipype/interfaces/fsl/utils.py::nipype.interfaces.fsl.utils.Reorient2Std PASSED [ 54%] 168s nipype/interfaces/fsl/utils.py::nipype.interfaces.fsl.utils.SigLoss PASSED [ 54%] 168s nipype/interfaces/fsl/utils.py::nipype.interfaces.fsl.utils.Slice PASSED [ 54%] 168s nipype/interfaces/fsl/utils.py::nipype.interfaces.fsl.utils.Slicer PASSED [ 54%] 168s 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[ 95%] 288s nipype/testing/tests/test_utils.py::test_tempfatfs_calledprocesserror PASSED [ 95%] 288s nipype/testing/tests/test_utils.py::test_tempfatfs_oserror PASSED [ 95%] 288s nipype/tests/test_nipype.py::test_nipype_info PASSED [ 95%] 288s nipype/tests/test_nipype.py::test_git_hash SKIPPED (not able to get ...) [ 95%] 288s nipype/tests/test_nipype.py::test_no_et_bare PASSED [ 96%] 290s nipype/tests/test_nipype.py::test_no_et_multiproc[True-MultiProc] PASSED [ 96%] 292s nipype/tests/test_nipype.py::test_no_et_multiproc[True-LegacyMultiProc] PASSED [ 96%] 297s nipype/tests/test_nipype.py::test_no_et_multiproc[False-MultiProc] PASSED [ 96%] 300s nipype/tests/test_nipype.py::test_no_et_multiproc[False-LegacyMultiProc] PASSED [ 96%] 300s nipype/tests/test_sample.py::test_basic PASSED [ 96%] 300s nipype/utils/docparse.py::nipype.utils.docparse.insert_doc PASSED [ 96%] 300s nipype/utils/filemanip.py::nipype.utils.filemanip.fname_presuffix PASSED [ 96%] 300s nipype/utils/filemanip.py::nipype.utils.filemanip.hash_infile PASSED [ 96%] 300s nipype/utils/filemanip.py::nipype.utils.filemanip.read_stream PASSED [ 96%] 300s nipype/utils/filemanip.py::nipype.utils.filemanip.split_filename PASSED [ 96%] 300s nipype/utils/matlabtools.py::nipype.utils.matlabtools.mlab_tempfile PASSED [ 96%] 300s nipype/utils/misc.py::nipype.utils.misc.str2bool PASSED [ 96%] 300s nipype/utils/onetime.py::nipype.utils.onetime.setattr_on_read PASSED [ 96%] 300s nipype/utils/tests/test_cmd.py::TestNipypeCMD::test_main_returns_2_on_empty PASSED [ 96%] 300s nipype/utils/tests/test_cmd.py::TestNipypeCMD::test_main_returns_0_on_help PASSED [ 96%] 300s nipype/utils/tests/test_cmd.py::TestNipypeCMD::test_list_nipy_interfacesp PASSED [ 96%] 300s nipype/utils/tests/test_config.py::test_display_parse[:12] PASSED [ 96%] 300s nipype/utils/tests/test_config.py::test_display_parse[localhost:12] PASSED [ 96%] 300s nipype/utils/tests/test_config.py::test_display_parse[localhost:12.1] PASSED [ 96%] 300s nipype/utils/tests/test_config.py::test_display_config[0] PASSED [ 96%] 300s nipype/utils/tests/test_config.py::test_display_config[1] PASSED [ 96%] 300s nipype/utils/tests/test_config.py::test_display_config[2] PASSED [ 96%] 300s nipype/utils/tests/test_config.py::test_display_config[3] PASSED [ 96%] 300s nipype/utils/tests/test_config.py::test_display_config[4] PASSED [ 96%] 300s nipype/utils/tests/test_config.py::test_display_system[0] PASSED [ 96%] 300s nipype/utils/tests/test_config.py::test_display_system[1] PASSED [ 96%] 300s nipype/utils/tests/test_config.py::test_display_system[2] PASSED [ 96%] 300s nipype/utils/tests/test_config.py::test_display_system[3] PASSED [ 96%] 300s nipype/utils/tests/test_config.py::test_display_system[4] PASSED [ 96%] 300s nipype/utils/tests/test_config.py::test_display_config_and_system PASSED [ 97%] 300s nipype/utils/tests/test_config.py::test_display_noconfig_nosystem_patched PASSED [ 97%] 300s nipype/utils/tests/test_config.py::test_display_empty_patched PASSED [ 97%] 300s nipype/utils/tests/test_config.py::test_display_noconfig_nosystem_patched_oldxvfbwrapper PASSED [ 97%] 300s nipype/utils/tests/test_config.py::test_display_empty_patched_oldxvfbwrapper PASSED [ 97%] 300s nipype/utils/tests/test_config.py::test_display_noconfig_nosystem_notinstalled PASSED [ 97%] 300s nipype/utils/tests/test_config.py::test_display_empty_notinstalled PASSED [ 97%] 300s nipype/utils/tests/test_config.py::test_display_noconfig_nosystem_installed SKIPPED [ 97%] 300s nipype/utils/tests/test_config.py::test_display_empty_installed SKIPPED [ 97%] 300s nipype/utils/tests/test_config.py::test_display_empty_macosx PASSED [ 97%] 300s nipype/utils/tests/test_config.py::test_cwd_cached PASSED [ 97%] 300s nipype/utils/tests/test_config.py::test_debug_mode PASSED [ 97%] 300s nipype/utils/tests/test_docparse.py::test_rev_opt_map PASSED [ 97%] 300s nipype/utils/tests/test_docparse.py::test_build_doc PASSED [ 97%] 300s nipype/utils/tests/test_docparse.py::test_insert_doc PASSED [ 97%] 300s nipype/utils/tests/test_filemanip.py::test_split_filename[foo.nii-split0] PASSED [ 97%] 300s nipype/utils/tests/test_filemanip.py::test_split_filename[foo.nii.gz-split1] PASSED [ 97%] 300s nipype/utils/tests/test_filemanip.py::test_split_filename[foo.niml.dset-split2] PASSED [ 97%] 300s nipype/utils/tests/test_filemanip.py::test_split_filename[/usr/local/foo.nii.gz-split3] PASSED [ 97%] 300s nipype/utils/tests/test_filemanip.py::test_split_filename[../usr/local/foo.nii-split4] PASSED [ 97%] 300s nipype/utils/tests/test_filemanip.py::test_split_filename[/usr/local/foo.a.b.c.d-split5] PASSED [ 97%] 300s nipype/utils/tests/test_filemanip.py::test_split_filename[/usr/local/-split6] PASSED [ 97%] 300s nipype/utils/tests/test_filemanip.py::test_fname_presuffix PASSED [ 97%] 300s nipype/utils/tests/test_filemanip.py::test_fnames_presuffix PASSED [ 97%] 300s nipype/utils/tests/test_filemanip.py::test_hash_rename[foobar.nii-foobar_0xabc123.nii] PASSED [ 97%] 300s nipype/utils/tests/test_filemanip.py::test_hash_rename[foobar.nii.gz-foobar_0xabc123.nii.gz] PASSED [ 97%] 300s nipype/utils/tests/test_filemanip.py::test_check_forhash PASSED [ 97%] 300s nipype/utils/tests/test_filemanip.py::test_copyfile PASSED [ 97%] 300s nipype/utils/tests/test_filemanip.py::test_copyfile_true PASSED [ 97%] 300s nipype/utils/tests/test_filemanip.py::test_copyfiles PASSED [ 97%] 300s nipype/utils/tests/test_filemanip.py::test_linkchain PASSED [ 98%] 300s nipype/utils/tests/test_filemanip.py::test_recopy PASSED [ 98%] 300s nipype/utils/tests/test_filemanip.py::test_copyfallback SKIPPED (Fus...) [ 98%] 300s nipype/utils/tests/test_filemanip.py::test_get_related_files PASSED [ 98%] 300s nipype/utils/tests/test_filemanip.py::test_get_related_files_noninclusive PASSED [ 98%] 300s nipype/utils/tests/test_filemanip.py::test_ensure_list[foo.nii-expected0] PASSED [ 98%] 300s nipype/utils/tests/test_filemanip.py::test_ensure_list[filename1-expected1] PASSED [ 98%] 300s nipype/utils/tests/test_filemanip.py::test_ensure_list[filename2-expected2] PASSED [ 98%] 300s nipype/utils/tests/test_filemanip.py::test_ensure_list[12.34-None] PASSED [ 98%] 300s nipype/utils/tests/test_filemanip.py::test_simplify_list[list0-foo.nii] PASSED [ 98%] 300s nipype/utils/tests/test_filemanip.py::test_simplify_list[list1-expected1] PASSED [ 98%] 302s nipype/utils/tests/test_filemanip.py::test_check_depends PASSED [ 98%] 302s nipype/utils/tests/test_filemanip.py::test_json PASSED [ 98%] 302s nipype/utils/tests/test_filemanip.py::test_related_files[/path/test.img-3-expected_files0] PASSED [ 98%] 302s nipype/utils/tests/test_filemanip.py::test_related_files[/path/test.hdr-3-expected_files1] PASSED [ 98%] 302s nipype/utils/tests/test_filemanip.py::test_related_files[/path/test.BRIK-2-expected_files2] PASSED [ 98%] 302s nipype/utils/tests/test_filemanip.py::test_related_files[/path/test.HEAD-2-expected_files3] PASSED [ 98%] 302s nipype/utils/tests/test_filemanip.py::test_related_files[/path/foo.nii-2-expected_files4] PASSED [ 98%] 302s nipype/utils/tests/test_filemanip.py::test_parse_mount_table[sysfs on /sys type sysfs (rw,nosuid,nodev,noexec,relatime)\nproc on /proc type proc (rw,nosuid,nodev,noexec,relatime)\nudev on /dev type devtmpfs (rw,nosuid,relatime,size=8121732k,nr_inodes=2030433,mode=755)\ndevpts on /dev/pts type devpts (rw,nosuid,noexec,relatime,gid=5,mode=620,ptmxmode=000)\ntmpfs on /run type tmpfs (rw,nosuid,noexec,relatime,size=1628440k,mode=755)\n/dev/nvme0n1p2 on / type ext4 (rw,relatime,errors=remount-ro,data=ordered)\nsecurityfs on /sys/kernel/security type securityfs (rw,nosuid,nodev,noexec,relatime)\ntmpfs on /dev/shm type tmpfs (rw,nosuid,nodev)\ntmpfs on /sys/fs/cgroup type tmpfs (ro,nosuid,nodev,noexec,mode=755)\ncgroup on /sys/fs/cgroup/systemd type cgroup (rw,nosuid,nodev,noexec,relatime,xattr,release_agent=/lib/systemd/systemd-cgroups-agent,name=systemd)\npstore on /sys/fs/pstore type pstore (rw,nosuid,nodev,noexec,relatime)\nefivarfs on /sys/firmware/efi/efivars type efivarfs (rw,nosuid,nodev,noexec,relatime)\ncgroup on /sys/fs/cgroup/cpu,cpuacct type cgroup (rw,nosuid,nodev,noexec,relatime,cpu,cpuacct)\ncgroup on /sys/fs/cgroup/freezer type cgroup (rw,nosuid,nodev,noexec,relatime,freezer)\ncgroup on /sys/fs/cgroup/pids type cgroup (rw,nosuid,nodev,noexec,relatime,pids)\ncgroup on /sys/fs/cgroup/cpuset type cgroup (rw,nosuid,nodev,noexec,relatime,cpuset)\nsystemd-1 on /proc/sys/fs/binfmt_misc type autofs (rw,relatime,fd=26,pgrp=1,timeout=0,minproto=5,maxproto=5,direct)\nhugetlbfs on /dev/hugepages type hugetlbfs (rw,relatime)\ndebugfs on /sys/kernel/debug type debugfs (rw,relatime)\nmqueue on /dev/mqueue type mqueue (rw,relatime)\nfusectl on /sys/fs/fuse/connections type fusectl (rw,relatime)\n/dev/nvme0n1p1 on /boot/efi type vfat (rw,relatime,fmask=0077,dmask=0077,codepage=437,iocharset=iso8859-1,shortname=mixed,errors=remount-ro)\n/dev/nvme0n1p2 on /var/lib/docker/aufs type ext4 (rw,relatime,errors=remount-ro,data=ordered)\ngvfsd-fuse on /run/user/1002/gvfs type fuse.gvfsd-fuse (rw,nosuid,nodev,relatime,user_id=1002,group_id=1002)\n-0-expected0] PASSED [ 98%] 302s nipype/utils/tests/test_filemanip.py::test_parse_mount_table[/dev/disk2 on / (hfs, local, journaled)\ndevfs on /dev (devfs, local, nobrowse)\nmap -hosts on /net (autofs, nosuid, automounted, nobrowse)\nmap auto_home on /home (autofs, automounted, nobrowse)\nmap -fstab on /Network/Servers (autofs, automounted, nobrowse)\n/dev/disk3s2 on /Volumes/MyBookData (hfs, local, nodev, nosuid, journaled)\nafni:/elrond0 on /Volumes/afni (nfs)\nafni:/var/www/INCOMING on /Volumes/INCOMING (nfs)\nafni:/fraid on /Volumes/afni (nfs, asynchronous)\nboromir:/raid.bot on /Volumes/raid.bot (nfs)\nelros:/volume2/AFNI_SHARE on /Volumes/AFNI_SHARE (nfs)\nmap -static on /Volumes/safni (autofs, automounted, nobrowse)\nmap -static on /Volumes/raid.top (autofs, automounted, nobrowse)\n/dev/disk1s3 on /Volumes/Boot OS X (hfs, local, journaled, nobrowse)\n-0-expected1] PASSED [ 98%] 302s nipype/utils/tests/test_filemanip.py::test_parse_mount_table[-1-expected2] PASSED [ 98%] 302s nipype/utils/tests/test_filemanip.py::test_parse_mount_table[sysfs on /sys type sysfs (rw,nosuid,nodev,noexec,relatime)\nproc on /proc type proc (rw,nosuid,nodev,noexec,relatime)\nudev on /dev type devtmpfs (rw,nosuid,relatime,size=8121732k,nr_inodes=2030433,mode=755)\ndevpts on /dev/pts type devpts (rw,nosuid,noexec,relatime,gid=5,mode=620,ptmxmode=000)\ntmpfs on /run type tmpfs (rw,nosuid,noexec,relatime,size=1628440k,mode=755)\n/dev/nvme0n1p2 on / type ext4 (rw,relatime,errors=remount-ro,data=ordered)\nsecurityfs on /sys/kernel/security type securityfs (rw,nosuid,nodev,noexec,relatime)\ntmpfs on /dev/shm type tmpfs (rw,nosuid,nodev)\ntmpfs on /sys/fs/cgroup type tmpfs (ro,nosuid,nodev,noexec,mode=755)\ncgroup on /sys/fs/cgroup/systemd type cgroup (rw,nosuid,nodev,noexec,relatime,xattr,release_agent=/lib/systemd/systemd-cgroups-agent,name=systemd)\npstore on /sys/fs/pstore type pstore (rw,nosuid,nodev,noexec,relatime)\nefivarfs on /sys/firmware/efi/efivars type efivarfs (rw,nosuid,nodev,noexec,relatime)\ncgroup on /sys/fs/cgroup/cpu,cpuacct type cgroup (rw,nosuid,nodev,noexec,relatime,cpu,cpuacct)\ncgroup on /sys/fs/cgroup/freezer type cgroup (rw,nosuid,nodev,noexec,relatime,freezer)\ncgroup on /sys/fs/cgroup/pids type cgroup (rw,nosuid,nodev,noexec,relatime,pids)\ncgroup on /sys/fs/cgroup/cpuset type cgroup (rw,nosuid,nodev,noexec,relatime,cpuset)\nsystemd-1 on /proc/sys/fs/binfmt_misc type autofs (rw,relatime,fd=26,pgrp=1,timeout=0,minproto=5,maxproto=5,direct)\nhugetlbfs on /dev/hugepages type hugetlbfs (rw,relatime)\ndebugfs on /sys/kernel/debug type debugfs (rw,relatime)\nmqueue on /dev/mqueue type mqueue (rw,relatime)\nfusectl on /sys/fs/fuse/connections type fusectl (rw,relatime)\n/dev/nvme0n1p1 on /boot/efi type vfat (rw,relatime,fmask=0077,dmask=0077,codepage=437,iocharset=iso8859-1,shortname=mixed,errors=remount-ro)\n/dev/nvme0n1p2 on /var/lib/docker/aufs type ext4 (rw,relatime,errors=remount-ro,data=ordered)\ngvfsd-fuse on /run/user/1002/gvfs type fuse.gvfsd-fuse (rw,nosuid,nodev,relatime,user_id=1002,group_id=1002)\n-0-expected3] PASSED [ 98%] 302s nipype/utils/tests/test_filemanip.py::test_parse_mount_table[/dev/disk2 on / (hfs, local, journaled)\ndevfs on /dev (devfs, local, nobrowse)\nafni:/elrond0 on /Volumes/afni (cifs)\nafni:/var/www/INCOMING on /Volumes/INCOMING (nfs)\nafni:/fraid on /Volumes/afni/fraid (nfs, asynchronous)\nboromir:/raid.bot on /Volumes/raid.bot (nfs)\nelros:/volume2/AFNI_SHARE on /Volumes/AFNI_SHARE (nfs)\n-0-expected4] PASSED [ 98%] 302s nipype/utils/tests/test_filemanip.py::test_parse_mount_table[overlay on / type overlay (rw,relatime,lowerdir=/var/lib/docker/overlay2/l/26UTYITLF24YE7KEGTMHUNHPPG:/var/lib/docker/overlay2/l/SWGNP3T2EEB4CNBJFN3SDZLXHP,upperdir=/var/lib/docker/overlay2/a4c54ab1aa031bb5a14a424abd655510521e183ee4fa4158672e8376c89df394/diff,workdir=/var/lib/docker/overlay2/a4c54ab1aa031bb5a14a424abd655510521e183ee4fa4158672e8376c89df394/work)\nproc on /proc type proc (rw,nosuid,nodev,noexec,relatime)\ntmpfs on /dev type tmpfs (rw,nosuid,size=65536k,mode=755)\ndevpts on /dev/pts type devpts (rw,nosuid,noexec,relatime,gid=5,mode=620,ptmxmode=666)\nsysfs on /sys type sysfs (ro,nosuid,nodev,noexec,relatime)\ntmpfs on /sys/fs/cgroup type tmpfs (ro,nosuid,nodev,noexec,relatime,mode=755)\ncpuset on /sys/fs/cgroup/cpuset type cgroup (ro,nosuid,nodev,noexec,relatime,cpuset)\ncpu on /sys/fs/cgroup/cpu type cgroup (ro,nosuid,nodev,noexec,relatime,cpu)\ncpuacct on /sys/fs/cgroup/cpuacct type cgroup (ro,nosuid,nodev,noexec,relatime,cpuacct)\nblkio on /sys/fs/cgroup/blkio type cgroup (ro,nosuid,nodev,noexec,relatime,blkio)\nmemory on /sys/fs/cgroup/memory type cgroup (ro,nosuid,nodev,noexec,relatime,memory)\ndevices on /sys/fs/cgroup/devices type cgroup (ro,nosuid,nodev,noexec,relatime,devices)\nfreezer on /sys/fs/cgroup/freezer type cgroup (ro,nosuid,nodev,noexec,relatime,freezer)\nnet_cls on /sys/fs/cgroup/net_cls type cgroup (ro,nosuid,nodev,noexec,relatime,net_cls)\nperf_event on /sys/fs/cgroup/perf_event type cgroup (ro,nosuid,nodev,noexec,relatime,perf_event)\nnet_prio on /sys/fs/cgroup/net_prio type cgroup (ro,nosuid,nodev,noexec,relatime,net_prio)\nhugetlb on /sys/fs/cgroup/hugetlb type cgroup (ro,nosuid,nodev,noexec,relatime,hugetlb)\npids on /sys/fs/cgroup/pids type cgroup (ro,nosuid,nodev,noexec,relatime,pids)\ncgroup on /sys/fs/cgroup/systemd type cgroup (ro,nosuid,nodev,noexec,relatime,name=systemd)\nmqueue on /dev/mqueue type mqueue (rw,nosuid,nodev,noexec,relatime)\n//10.0.75.1/C on /data type cifs (rw,relatime,vers=3.02,sec=ntlmsspi,cache=strict,username=filo,domain=MSI,uid=0,noforceuid,gid=0,noforcegid,addr=10.0.75.1,file_mode=0755,dir_mode=0755,iocharset=utf8,nounix,serverino,mapposix,nobrl,mfsymlinks,noperm,rsize=1048576,wsize=1048576,echo_interval=60,actimeo=1)\n/dev/sda1 on /etc/resolv.conf type ext4 (rw,relatime,data=ordered)\n/dev/sda1 on /etc/hostname type ext4 (rw,relatime,data=ordered)\n/dev/sda1 on /etc/hosts type ext4 (rw,relatime,data=ordered)\nshm on /dev/shm type tmpfs (rw,nosuid,nodev,noexec,relatime,size=65536k)\ndevpts on /dev/console type devpts (rw,nosuid,noexec,relatime,gid=5,mode=620,ptmxmode=666)\nproc on /proc/bus type proc (ro,relatime)\nproc on /proc/fs type proc (ro,relatime)\nproc on /proc/irq type proc (ro,relatime)\nproc on /proc/sys type proc (ro,relatime)\nproc on /proc/sysrq-trigger type proc (ro,relatime)\ntmpfs on /proc/kcore type tmpfs (rw,nosuid,size=65536k,mode=755)\ntmpfs on /proc/timer_list type tmpfs (rw,nosuid,size=65536k,mode=755)\ntmpfs on /proc/sched_debug type tmpfs (rw,nosuid,size=65536k,mode=755)\ntmpfs on /proc/scsi type tmpfs (ro,relatime)\ntmpfs on /sys/firmware type tmpfs (ro,relatime)\n-0-expected5] PASSED [ 98%] 302s nipype/utils/tests/test_filemanip.py::test_parse_mount_table[/proc on /proc type proc (rw,relatime)\nsysfs on /sys type sysfs (rw,nosuid,nodev,noexec,relatime)\ntmpfs on /dev/shm type tmpfs (rw,relatime)\ndevpts on /dev/pts type devpts (rw,nosuid,noexec,relatime,gid=5,mode=620,ptmxmode=666)\n\ndevpts on /dev/ptmx type devpts (rw,nosuid,noexec,relatime,gid=5,mode=620,ptmxmode=666)\n\n-0-expected6] PASSED [ 98%] 302s nipype/utils/tests/test_filemanip.py::test_cifs_check PASSED [ 98%] 302s nipype/utils/tests/test_filemanip.py::test_indirectory PASSED [ 98%] 302s nipype/utils/tests/test_filemanip.py::test_pklization PASSED [ 98%] 302s nipype/utils/tests/test_filemanip.py::test_versioned_pklization PASSED [ 98%] 302s nipype/utils/tests/test_filemanip.py::test_unversioned_pklization PASSED [ 98%] 302s nipype/utils/tests/test_filemanip.py::test_path_strict_resolve PASSED [ 99%] 302s nipype/utils/tests/test_filemanip.py::test_pickle[True] PASSED [ 99%] 302s nipype/utils/tests/test_filemanip.py::test_pickle[False] PASSED [ 99%] 302s nipype/utils/tests/test_filemanip.py::test_write_rst_list[- \n\n] PASSED [ 99%] 302s nipype/utils/tests/test_filemanip.py::test_write_rst_list[A string- A string\n\n] PASSED [ 99%] 302s nipype/utils/tests/test_filemanip.py::test_write_rst_list[items2- A list\n Of strings\n\n] PASSED [ 99%] 302s nipype/utils/tests/test_filemanip.py::test_write_rst_list[None-TypeError] PASSED [ 99%] 302s nipype/utils/tests/test_filemanip.py::test_emptydirs_dangling_nfs PASSED [ 99%] 302s nipype/utils/tests/test_functions.py::test_func_to_str PASSED [ 99%] 302s nipype/utils/tests/test_functions.py::test_func_to_str_err PASSED [ 99%] 302s nipype/utils/tests/test_functions.py::test_func_string PASSED [ 99%] 302s nipype/utils/tests/test_functions.py::test_func_print PASSED [ 99%] 302s nipype/utils/tests/test_imagemanip.py::test_copy_header[True] PASSED [ 99%] 302s nipype/utils/tests/test_imagemanip.py::test_copy_header[False] PASSED [ 99%] 302s nipype/utils/tests/test_misc.py::test_cont_to_str PASSED [ 99%] 302s nipype/utils/tests/test_misc.py::test_str2bool[yes-True] PASSED [ 99%] 302s nipype/utils/tests/test_misc.py::test_str2bool[true-True] PASSED [ 99%] 302s nipype/utils/tests/test_misc.py::test_str2bool[t-True] PASSED [ 99%] 302s nipype/utils/tests/test_misc.py::test_str2bool[1-True] PASSED [ 99%] 302s nipype/utils/tests/test_misc.py::test_str2bool[no-False] PASSED [ 99%] 302s nipype/utils/tests/test_misc.py::test_str2bool[false-False] PASSED [ 99%] 302s nipype/utils/tests/test_misc.py::test_str2bool[n-False] PASSED [ 99%] 302s nipype/utils/tests/test_misc.py::test_str2bool[f-False] PASSED [ 99%] 302s nipype/utils/tests/test_misc.py::test_str2bool[0-False] PASSED [ 99%] 302s nipype/utils/tests/test_misc.py::test_flatten PASSED [ 99%] 302s nipype/utils/tests/test_misc.py::test_rgetcwd PASSED [ 99%] 302s nipype/utils/tests/test_misc.py::test_dict_diff PASSED [ 99%] 303s nipype/utils/tests/test_nipype2boutiques.py::test_generate PASSED [ 99%] 303s nipype/utils/tests/test_provenance.py::test_provenance PASSED [ 99%] 303s nipype/utils/tests/test_provenance.py::test_provenance_exists PASSED [ 99%] 304s nipype/utils/tests/test_provenance.py::test_safe_encode PASSED [100%] 304s 304s =============================== warnings summary =============================== 304s ../../../usr/lib/python3/dist-packages/traits/observation/_generated_parser.py:258 304s /usr/lib/python3/dist-packages/traits/observation/_generated_parser.py:258: DeprecationWarning: module 'sre_parse' is deprecated 304s import sre_parse 304s 304s ../../../usr/lib/python3/dist-packages/traits/observation/_generated_parser.py:259 304s /usr/lib/python3/dist-packages/traits/observation/_generated_parser.py:259: DeprecationWarning: module 'sre_constants' is deprecated 304s import sre_constants 304s 304s ../../../usr/lib/python3/dist-packages/_pytest/config/__init__.py:1428 304s /usr/lib/python3/dist-packages/_pytest/config/__init__.py:1428: PytestConfigWarning: Unknown config option: env 304s 304s self._warn_or_fail_if_strict(f"Unknown config option: {key}\n") 304s 304s ../../../usr/lib/python3/dist-packages/dipy/align/streamwarp.py:15 304s /usr/lib/python3/dist-packages/dipy/align/streamwarp.py:15: UserWarning: You do not have FURY installed. Some visualization functions might not work for you. Please install or upgrade FURY using pip install -U fury. For detailed installation instructions visit: https://fury.gl/ 304s from dipy.viz.plotting import bundle_shape_profile 304s 304s nipype/pipeline/engine/tests/test_nodes.py:319 304s /tmp/autopkgtest.W73JGv/autopkgtest_tmp/nipype/pipeline/engine/tests/test_nodes.py:319: PytestUnknownMarkWarning: Unknown pytest.mark.timeout - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html 304s @pytest.mark.timeout(30) 304s 304s nipype/pipeline/plugins/tests/test_oar.py:33 304s /tmp/autopkgtest.W73JGv/autopkgtest_tmp/nipype/pipeline/plugins/tests/test_oar.py:33: PytestUnknownMarkWarning: Unknown pytest.mark.timeout - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html 304s @pytest.mark.timeout(60) 304s 304s nipype/pipeline/plugins/tests/test_pbs.py:32 304s /tmp/autopkgtest.W73JGv/autopkgtest_tmp/nipype/pipeline/plugins/tests/test_pbs.py:32: PytestUnknownMarkWarning: Unknown pytest.mark.timeout - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html 304s @pytest.mark.timeout(60) 304s 304s nipype/utils/tests/test_provenance.py:16 304s /tmp/autopkgtest.W73JGv/autopkgtest_tmp/nipype/utils/tests/test_provenance.py:16: PytestUnknownMarkWarning: Unknown pytest.mark.timeout - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html 304s @pytest.mark.timeout(60) 304s 304s nipype/utils/tests/test_provenance.py:29 304s /tmp/autopkgtest.W73JGv/autopkgtest_tmp/nipype/utils/tests/test_provenance.py:29: PytestUnknownMarkWarning: Unknown pytest.mark.timeout - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html 304s @pytest.mark.timeout(60) 304s 304s nipype/workflows/__init__.py:27 304s /tmp/autopkgtest.W73JGv/autopkgtest_tmp/nipype/workflows/__init__.py:27: UserWarning: Nipype 1 workflows have been moved to the niflow-nipype1-workflows package. pip install niflow-nipype1-workflows to continue using them. 304s warnings.warn(" ".join(_msg)) 304s 304s algorithms/tests/test_CompCor.py::TestCompCor::test_tcompcor_asymmetric_dim 304s /tmp/autopkgtest.W73JGv/autopkgtest_tmp/nipype/algorithms/confounds.py:1453: RuntimeWarning: invalid value encountered in divide 304s variance_explained = (s**2) / np.sum(s**2) 304s 304s interfaces/ants/utils.py::nipype.interfaces.ants.utils.ImageMath 304s /tmp/autopkgtest.W73JGv/autopkgtest_tmp/nipype/interfaces/ants/utils.py:216: UserWarning: copy_header cannot be updated to True with PadImage as operation. 304s warn( 304s 304s interfaces/dipy/tests/test_base.py::test_get_default_args 304s /tmp/autopkgtest.W73JGv/autopkgtest_tmp/nipype/interfaces/dipy/tests/test_base.py:130: UserWarning: Pass ['new_name', 'since', 'until'] as keyword args. From version 2.0.0 passing these as positional arguments will result in an error. 304s @deprecated_params('x', None, '0.3', '0.5', alternative='test2.y') 304s 304s interfaces/dipy/tests/test_base.py::test_get_default_args 304s /tmp/autopkgtest.W73JGv/autopkgtest_tmp/nipype/interfaces/dipy/tests/test_base.py:134: UserWarning: Pass ['new_name', 'since'] as keyword args. From version 2.0.0 passing these as positional arguments will result in an error. 304s @deprecated_params(['dummy', 'x'], None, '0.3', alternative='test2.y') 304s 304s interfaces/dipy/tests/test_base.py::test_get_default_args 304s /tmp/autopkgtest.W73JGv/autopkgtest_tmp/nipype/interfaces/dipy/tests/test_base.py:138: UserWarning: Pass ['new_name', 'since', 'until'] as keyword args. From version 2.0.0 passing these as positional arguments will result in an error. 304s @deprecated_params(['dummy', 'x'], None, '0.3', '0.5', alternative='test2.y') 304s 304s interfaces/fsl/dti.py::nipype.interfaces.fsl.dti.ProbTrackX 304s interfaces/fsl/dti.py::nipype.interfaces.fsl.dti.ProbTrackX2 304s /tmp/autopkgtest.W73JGv/autopkgtest_tmp/nipype/interfaces/fsl/dti.py:812: DeprecationWarning: Deprecated: Please use create_bedpostx_pipeline instead 304s warnings.warn( 304s 304s interfaces/fsl/epi.py::nipype.interfaces.fsl.epi.EPIDeWarp 304s /tmp/autopkgtest.W73JGv/autopkgtest_tmp/nipype/interfaces/fsl/epi.py:1400: DeprecationWarning: Deprecated: Please use niflow.nipype1.workflows.dmri.preprocess.epi.sdc_fmb instead 304s warnings.warn( 304s 304s interfaces/fsl/epi.py::nipype.interfaces.fsl.epi.EddyCorrect 304s /tmp/autopkgtest.W73JGv/autopkgtest_tmp/nipype/interfaces/fsl/epi.py:1506: DeprecationWarning: Deprecated: Please use nipype.interfaces.fsl.epi.Eddy instead 304s warnings.warn( 304s 304s interfaces/nipy/utils.py::nipype.interfaces.nipy.utils.Similarity 304s /tmp/autopkgtest.W73JGv/autopkgtest_tmp/nipype/interfaces/nipy/utils.py:57: DeprecationWarning: This interface is deprecated since 0.10.0. Please use nipype.algorithms.metrics.Similarity 304s warnings.warn( 304s 304s pipeline/engine/tests/test_engine.py: 24 warnings 304s compilation 13:5: DeprecationWarning: nx.nx_pydot.write_dot depends on the pydot package, which has known issues and is not actively maintained. Consider using nx.nx_agraph.write_dot instead. 304s 304s See https://github.com/networkx/networkx/issues/5723 304s 304s pipeline/engine/tests/test_engine.py: 24 warnings 304s /usr/lib/python3/dist-packages/networkx/drawing/nx_pydot.py:51: DeprecationWarning: nx.nx_pydot.to_pydot depends on the pydot package, which has known issues and is not actively maintained. 304s 304s See https://github.com/networkx/networkx/issues/5723 304s P = to_pydot(G) 304s 304s pipeline/engine/tests/test_utils.py::test_provenance 304s pipeline/engine/tests/test_utils.py::test_provenance 304s pipeline/engine/tests/test_utils.py::test_provenance 304s utils/tests/test_provenance.py::test_provenance_exists 304s /usr/lib/python3/dist-packages/prov/serializers/provrdf.py:269: DeprecationWarning: ConjunctiveGraph is deprecated, use Dataset instead. 304s container = ConjunctiveGraph(identifier=identifier) 304s 304s pipeline/plugins/tests/test_callback.py::test_callback_exception[True-LegacyMultiProc] 304s pipeline/plugins/tests/test_callback.py::test_callback_exception[True-LegacyMultiProc] 304s /usr/lib/python3.13/multiprocessing/popen_fork.py:67: DeprecationWarning: This process (pid=4101) is multi-threaded, use of fork() may lead to deadlocks in the child. 304s self.pid = os.fork() 304s 304s utils/tests/test_misc.py::test_rgetcwd 304s /tmp/autopkgtest.W73JGv/autopkgtest_tmp/nipype/utils/misc.py:363: UserWarning: Current folder does not exist, replacing with "/tmp/pytest-of-ubuntu/pytest-0/test_rgetcwd0" instead. 304s warn('Current folder does not exist, replacing with "%s" instead.' % cwd) 304s 304s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 304s = 2741 passed, 267 skipped, 1 deselected, 5 xfailed, 75 warnings in 154.92s (0:02:34) = 306s Testing with python3.14 in /tmp/autopkgtest.W73JGv/autopkgtest_tmp: 307s ============================= test session starts ============================== 307s platform linux -- Python 3.14.2, pytest-9.0.2, pluggy-1.6.0 -- /usr/bin/python3.14 307s cachedir: .pytest_cache 307s rootdir: /tmp/autopkgtest.W73JGv/autopkgtest_tmp/nipype 307s configfile: pytest.ini 307s plugins: typeguard-4.4.4, xdist-3.8.0 317s collecting ... collected 3014 items / 1 deselected / 3013 selected 317s 317s nipype/algorithms/confounds.py::nipype.algorithms.confounds.CompCor PASSED [ 0%] 317s nipype/algorithms/confounds.py::nipype.algorithms.confounds.TCompCor PASSED [ 0%] 317s nipype/algorithms/confounds.py::nipype.algorithms.confounds.TSNR PASSED [ 0%] 317s nipype/algorithms/metrics.py::nipype.algorithms.metrics.ErrorMap PASSED [ 0%] 317s nipype/algorithms/metrics.py::nipype.algorithms.metrics.FuzzyOverlap PASSED [ 0%] 317s nipype/algorithms/metrics.py::nipype.algorithms.metrics.Overlap PASSED [ 0%] 317s nipype/algorithms/metrics.py::nipype.algorithms.metrics.Similarity PASSED [ 0%] 317s nipype/algorithms/misc.py::nipype.algorithms.misc.AddCSVColumn PASSED [ 0%] 317s nipype/algorithms/misc.py::nipype.algorithms.misc.AddCSVRow 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nipype/interfaces/fsl/tests/test_auto_Split.py::test_Split_outputs PASSED [ 47%] 327s nipype/interfaces/fsl/tests/test_auto_StdImage.py::test_StdImage_inputs PASSED [ 47%] 327s nipype/interfaces/fsl/tests/test_auto_StdImage.py::test_StdImage_outputs PASSED [ 47%] 327s nipype/interfaces/fsl/tests/test_auto_SwapDimensions.py::test_SwapDimensions_inputs PASSED [ 47%] 327s nipype/interfaces/fsl/tests/test_auto_SwapDimensions.py::test_SwapDimensions_outputs PASSED [ 47%] 327s nipype/interfaces/fsl/tests/test_auto_TOPUP.py::test_TOPUP_inputs PASSED [ 47%] 327s nipype/interfaces/fsl/tests/test_auto_TOPUP.py::test_TOPUP_outputs PASSED [ 47%] 327s nipype/interfaces/fsl/tests/test_auto_TemporalFilter.py::test_TemporalFilter_inputs PASSED [ 47%] 327s nipype/interfaces/fsl/tests/test_auto_TemporalFilter.py::test_TemporalFilter_outputs PASSED [ 47%] 327s nipype/interfaces/fsl/tests/test_auto_Text2Vest.py::test_Text2Vest_inputs PASSED [ 47%] 327s nipype/interfaces/fsl/tests/test_auto_Text2Vest.py::test_Text2Vest_outputs PASSED [ 47%] 327s nipype/interfaces/fsl/tests/test_auto_Threshold.py::test_Threshold_inputs PASSED [ 47%] 327s nipype/interfaces/fsl/tests/test_auto_Threshold.py::test_Threshold_outputs PASSED [ 47%] 327s nipype/interfaces/fsl/tests/test_auto_TractSkeleton.py::test_TractSkeleton_inputs PASSED [ 47%] 327s nipype/interfaces/fsl/tests/test_auto_TractSkeleton.py::test_TractSkeleton_outputs PASSED [ 47%] 327s nipype/interfaces/fsl/tests/test_auto_Training.py::test_Training_inputs PASSED [ 47%] 327s nipype/interfaces/fsl/tests/test_auto_Training.py::test_Training_outputs PASSED [ 47%] 327s nipype/interfaces/fsl/tests/test_auto_TrainingSetCreator.py::test_TrainingSetCreator_inputs PASSED [ 47%] 327s nipype/interfaces/fsl/tests/test_auto_TrainingSetCreator.py::test_TrainingSetCreator_outputs PASSED [ 47%] 327s nipype/interfaces/fsl/tests/test_auto_UnaryMaths.py::test_UnaryMaths_inputs PASSED [ 47%] 327s nipype/interfaces/fsl/tests/test_auto_UnaryMaths.py::test_UnaryMaths_outputs PASSED [ 47%] 327s nipype/interfaces/fsl/tests/test_auto_VecReg.py::test_VecReg_inputs PASSED [ 47%] 327s nipype/interfaces/fsl/tests/test_auto_VecReg.py::test_VecReg_outputs PASSED [ 47%] 327s nipype/interfaces/fsl/tests/test_auto_Vest2Text.py::test_Vest2Text_inputs PASSED [ 48%] 327s nipype/interfaces/fsl/tests/test_auto_Vest2Text.py::test_Vest2Text_outputs PASSED [ 48%] 327s nipype/interfaces/fsl/tests/test_auto_WarpPoints.py::test_WarpPoints_inputs PASSED [ 48%] 327s nipype/interfaces/fsl/tests/test_auto_WarpPoints.py::test_WarpPoints_outputs PASSED [ 48%] 327s nipype/interfaces/fsl/tests/test_auto_WarpPointsFromStd.py::test_WarpPointsFromStd_inputs PASSED [ 48%] 327s nipype/interfaces/fsl/tests/test_auto_WarpPointsFromStd.py::test_WarpPointsFromStd_outputs PASSED [ 48%] 327s nipype/interfaces/fsl/tests/test_auto_WarpPointsToStd.py::test_WarpPointsToStd_inputs PASSED [ 48%] 327s nipype/interfaces/fsl/tests/test_auto_WarpPointsToStd.py::test_WarpPointsToStd_outputs PASSED [ 48%] 327s nipype/interfaces/fsl/tests/test_auto_WarpUtils.py::test_WarpUtils_inputs PASSED [ 48%] 327s nipype/interfaces/fsl/tests/test_auto_WarpUtils.py::test_WarpUtils_outputs PASSED [ 48%] 327s nipype/interfaces/fsl/tests/test_auto_XFibres5.py::test_XFibres5_inputs PASSED [ 48%] 327s nipype/interfaces/fsl/tests/test_auto_XFibres5.py::test_XFibres5_outputs PASSED [ 48%] 327s nipype/interfaces/fsl/tests/test_base.py::test_fslversion SKIPPED (f...) [ 48%] 327s nipype/interfaces/fsl/tests/test_base.py::test_fsloutputtype SKIPPED [ 48%] 327s nipype/interfaces/fsl/tests/test_base.py::test_outputtype_to_ext PASSED [ 48%] 327s nipype/interfaces/fsl/tests/test_base.py::test_FSLCommand SKIPPED (f...) [ 48%] 327s nipype/interfaces/fsl/tests/test_base.py::test_FSLCommand2 SKIPPED (...) [ 48%] 327s nipype/interfaces/fsl/tests/test_base.py::test_gen_fname[args0-desired_name0] SKIPPED [ 48%] 327s nipype/interfaces/fsl/tests/test_base.py::test_gen_fname[args1-desired_name1] SKIPPED [ 48%] 327s nipype/interfaces/fsl/tests/test_base.py::test_gen_fname[args2-desired_name2] SKIPPED [ 48%] 327s nipype/interfaces/fsl/tests/test_base.py::test_gen_fname[args3-desired_name3] SKIPPED [ 48%] 327s nipype/interfaces/fsl/tests/test_dti.py::test_dtifit2 SKIPPED (fsl i...) [ 48%] 327s nipype/interfaces/fsl/tests/test_dti.py::test_randomise2 XFAIL (Thes...) [ 48%] 327s nipype/interfaces/fsl/tests/test_dti.py::test_Randomise_parallel XFAIL [ 48%] 327s nipype/interfaces/fsl/tests/test_dti.py::test_Proj_thresh XFAIL (The...) [ 48%] 327s nipype/interfaces/fsl/tests/test_dti.py::test_Vec_reg XFAIL (These t...) [ 48%] 327s nipype/interfaces/fsl/tests/test_dti.py::test_Find_the_biggest XFAIL [ 48%] 327s nipype/interfaces/fsl/tests/test_dti.py::test_tbss_skeleton SKIPPED [ 48%] 327s nipype/interfaces/fsl/tests/test_dti.py::test_distancemap SKIPPED (f...) [ 48%] 327s nipype/interfaces/fsl/tests/test_epi.py::test_eddy_correct2 SKIPPED [ 48%] 327s nipype/interfaces/fsl/tests/test_maths.py::test_maths_base[None] SKIPPED [ 49%] 327s nipype/interfaces/fsl/tests/test_maths.py::test_maths_base[GIFTI] SKIPPED [ 49%] 327s nipype/interfaces/fsl/tests/test_maths.py::test_maths_base[NIFTI] SKIPPED [ 49%] 327s nipype/interfaces/fsl/tests/test_maths.py::test_maths_base[NIFTI_GZ] SKIPPED [ 49%] 327s nipype/interfaces/fsl/tests/test_maths.py::test_maths_base[NIFTI_PAIR] SKIPPED [ 49%] 327s nipype/interfaces/fsl/tests/test_maths.py::test_maths_base[NIFTI_PAIR_GZ] SKIPPED [ 49%] 327s nipype/interfaces/fsl/tests/test_maths.py::test_changedt[None] SKIPPED [ 49%] 327s nipype/interfaces/fsl/tests/test_maths.py::test_changedt[GIFTI] SKIPPED [ 49%] 327s nipype/interfaces/fsl/tests/test_maths.py::test_changedt[NIFTI] SKIPPED [ 49%] 327s nipype/interfaces/fsl/tests/test_maths.py::test_changedt[NIFTI_GZ] SKIPPED [ 49%] 327s nipype/interfaces/fsl/tests/test_maths.py::test_changedt[NIFTI_PAIR] SKIPPED [ 49%] 327s nipype/interfaces/fsl/tests/test_maths.py::test_changedt[NIFTI_PAIR_GZ] SKIPPED [ 49%] 327s nipype/interfaces/fsl/tests/test_maths.py::test_threshold[None] SKIPPED [ 49%] 327s nipype/interfaces/fsl/tests/test_maths.py::test_threshold[GIFTI] SKIPPED [ 49%] 327s nipype/interfaces/fsl/tests/test_maths.py::test_threshold[NIFTI] SKIPPED [ 49%] 327s nipype/interfaces/fsl/tests/test_maths.py::test_threshold[NIFTI_GZ] SKIPPED [ 49%] 327s nipype/interfaces/fsl/tests/test_maths.py::test_threshold[NIFTI_PAIR] SKIPPED [ 49%] 327s nipype/interfaces/fsl/tests/test_maths.py::test_threshold[NIFTI_PAIR_GZ] SKIPPED [ 49%] 327s nipype/interfaces/fsl/tests/test_maths.py::test_meanimage[None] SKIPPED [ 49%] 327s nipype/interfaces/fsl/tests/test_maths.py::test_meanimage[GIFTI] SKIPPED [ 49%] 327s nipype/interfaces/fsl/tests/test_maths.py::test_meanimage[NIFTI] SKIPPED [ 49%] 327s nipype/interfaces/fsl/tests/test_maths.py::test_meanimage[NIFTI_GZ] SKIPPED [ 49%] 327s nipype/interfaces/fsl/tests/test_maths.py::test_meanimage[NIFTI_PAIR] SKIPPED [ 49%] 327s nipype/interfaces/fsl/tests/test_maths.py::test_meanimage[NIFTI_PAIR_GZ] SKIPPED [ 49%] 327s nipype/interfaces/fsl/tests/test_maths.py::test_stdimage[None] SKIPPED [ 49%] 327s nipype/interfaces/fsl/tests/test_maths.py::test_stdimage[GIFTI] SKIPPED [ 49%] 327s nipype/interfaces/fsl/tests/test_maths.py::test_stdimage[NIFTI] SKIPPED [ 49%] 327s nipype/interfaces/fsl/tests/test_maths.py::test_stdimage[NIFTI_GZ] SKIPPED [ 49%] 327s nipype/interfaces/fsl/tests/test_maths.py::test_stdimage[NIFTI_PAIR] SKIPPED [ 49%] 327s nipype/interfaces/fsl/tests/test_maths.py::test_stdimage[NIFTI_PAIR_GZ] SKIPPED [ 49%] 327s nipype/interfaces/fsl/tests/test_maths.py::test_maximage[None] SKIPPED [ 50%] 327s nipype/interfaces/fsl/tests/test_maths.py::test_maximage[GIFTI] SKIPPED [ 50%] 327s nipype/interfaces/fsl/tests/test_maths.py::test_maximage[NIFTI] SKIPPED [ 50%] 327s nipype/interfaces/fsl/tests/test_maths.py::test_maximage[NIFTI_GZ] SKIPPED [ 50%] 327s nipype/interfaces/fsl/tests/test_maths.py::test_maximage[NIFTI_PAIR] SKIPPED [ 50%] 327s nipype/interfaces/fsl/tests/test_maths.py::test_maximage[NIFTI_PAIR_GZ] SKIPPED [ 50%] 327s nipype/interfaces/fsl/tests/test_maths.py::test_smooth[None] SKIPPED [ 50%] 327s nipype/interfaces/fsl/tests/test_maths.py::test_smooth[GIFTI] SKIPPED [ 50%] 327s nipype/interfaces/fsl/tests/test_maths.py::test_smooth[NIFTI] SKIPPED [ 50%] 327s nipype/interfaces/fsl/tests/test_maths.py::test_smooth[NIFTI_GZ] SKIPPED [ 50%] 327s nipype/interfaces/fsl/tests/test_maths.py::test_smooth[NIFTI_PAIR] SKIPPED [ 50%] 327s nipype/interfaces/fsl/tests/test_maths.py::test_smooth[NIFTI_PAIR_GZ] SKIPPED [ 50%] 327s nipype/interfaces/fsl/tests/test_maths.py::test_mask[None] SKIPPED (...) [ 50%] 327s nipype/interfaces/fsl/tests/test_maths.py::test_mask[GIFTI] SKIPPED [ 50%] 327s nipype/interfaces/fsl/tests/test_maths.py::test_mask[NIFTI] SKIPPED [ 50%] 327s nipype/interfaces/fsl/tests/test_maths.py::test_mask[NIFTI_GZ] SKIPPED [ 50%] 327s nipype/interfaces/fsl/tests/test_maths.py::test_mask[NIFTI_PAIR] SKIPPED [ 50%] 327s nipype/interfaces/fsl/tests/test_maths.py::test_mask[NIFTI_PAIR_GZ] SKIPPED [ 50%] 327s nipype/interfaces/fsl/tests/test_maths.py::test_dilation[None] SKIPPED [ 50%] 327s nipype/interfaces/fsl/tests/test_maths.py::test_dilation[GIFTI] SKIPPED [ 50%] 327s nipype/interfaces/fsl/tests/test_maths.py::test_dilation[NIFTI] SKIPPED [ 50%] 327s nipype/interfaces/fsl/tests/test_maths.py::test_dilation[NIFTI_GZ] SKIPPED [ 50%] 327s nipype/interfaces/fsl/tests/test_maths.py::test_dilation[NIFTI_PAIR] SKIPPED [ 50%] 327s nipype/interfaces/fsl/tests/test_maths.py::test_dilation[NIFTI_PAIR_GZ] SKIPPED [ 50%] 327s nipype/interfaces/fsl/tests/test_maths.py::test_erosion[None] SKIPPED [ 50%] 327s nipype/interfaces/fsl/tests/test_maths.py::test_erosion[GIFTI] SKIPPED [ 50%] 327s nipype/interfaces/fsl/tests/test_maths.py::test_erosion[NIFTI] SKIPPED [ 50%] 327s nipype/interfaces/fsl/tests/test_maths.py::test_erosion[NIFTI_GZ] SKIPPED [ 50%] 327s nipype/interfaces/fsl/tests/test_maths.py::test_erosion[NIFTI_PAIR] SKIPPED [ 50%] 327s nipype/interfaces/fsl/tests/test_maths.py::test_erosion[NIFTI_PAIR_GZ] SKIPPED [ 50%] 327s nipype/interfaces/fsl/tests/test_maths.py::test_spatial_filter[None] SKIPPED [ 51%] 327s nipype/interfaces/fsl/tests/test_maths.py::test_spatial_filter[GIFTI] SKIPPED [ 51%] 327s nipype/interfaces/fsl/tests/test_maths.py::test_spatial_filter[NIFTI] SKIPPED [ 51%] 327s nipype/interfaces/fsl/tests/test_maths.py::test_spatial_filter[NIFTI_GZ] SKIPPED [ 51%] 327s nipype/interfaces/fsl/tests/test_maths.py::test_spatial_filter[NIFTI_PAIR] SKIPPED [ 51%] 327s nipype/interfaces/fsl/tests/test_maths.py::test_spatial_filter[NIFTI_PAIR_GZ] SKIPPED [ 51%] 327s nipype/interfaces/fsl/tests/test_maths.py::test_unarymaths[None] SKIPPED [ 51%] 328s nipype/interfaces/fsl/tests/test_maths.py::test_unarymaths[GIFTI] SKIPPED [ 51%] 328s nipype/interfaces/fsl/tests/test_maths.py::test_unarymaths[NIFTI] SKIPPED [ 51%] 328s nipype/interfaces/fsl/tests/test_maths.py::test_unarymaths[NIFTI_GZ] SKIPPED [ 51%] 328s nipype/interfaces/fsl/tests/test_maths.py::test_unarymaths[NIFTI_PAIR] SKIPPED [ 51%] 328s nipype/interfaces/fsl/tests/test_maths.py::test_unarymaths[NIFTI_PAIR_GZ] SKIPPED [ 51%] 328s nipype/interfaces/fsl/tests/test_maths.py::test_binarymaths[None] SKIPPED [ 51%] 328s nipype/interfaces/fsl/tests/test_maths.py::test_binarymaths[GIFTI] SKIPPED [ 51%] 328s nipype/interfaces/fsl/tests/test_maths.py::test_binarymaths[NIFTI] SKIPPED [ 51%] 328s nipype/interfaces/fsl/tests/test_maths.py::test_binarymaths[NIFTI_GZ] SKIPPED [ 51%] 328s nipype/interfaces/fsl/tests/test_maths.py::test_binarymaths[NIFTI_PAIR] SKIPPED [ 51%] 328s nipype/interfaces/fsl/tests/test_maths.py::test_binarymaths[NIFTI_PAIR_GZ] SKIPPED [ 51%] 328s nipype/interfaces/fsl/tests/test_maths.py::test_multimaths[None] SKIPPED [ 51%] 328s nipype/interfaces/fsl/tests/test_maths.py::test_multimaths[GIFTI] SKIPPED [ 51%] 328s nipype/interfaces/fsl/tests/test_maths.py::test_multimaths[NIFTI] SKIPPED [ 51%] 328s nipype/interfaces/fsl/tests/test_maths.py::test_multimaths[NIFTI_GZ] SKIPPED [ 51%] 328s nipype/interfaces/fsl/tests/test_maths.py::test_multimaths[NIFTI_PAIR] SKIPPED [ 51%] 328s nipype/interfaces/fsl/tests/test_maths.py::test_multimaths[NIFTI_PAIR_GZ] SKIPPED [ 51%] 328s nipype/interfaces/fsl/tests/test_maths.py::test_tempfilt[None] SKIPPED [ 51%] 328s nipype/interfaces/fsl/tests/test_maths.py::test_tempfilt[GIFTI] SKIPPED [ 51%] 328s nipype/interfaces/fsl/tests/test_maths.py::test_tempfilt[NIFTI] SKIPPED [ 51%] 328s nipype/interfaces/fsl/tests/test_maths.py::test_tempfilt[NIFTI_GZ] SKIPPED [ 51%] 328s nipype/interfaces/fsl/tests/test_maths.py::test_tempfilt[NIFTI_PAIR] SKIPPED [ 51%] 328s nipype/interfaces/fsl/tests/test_maths.py::test_tempfilt[NIFTI_PAIR_GZ] SKIPPED [ 51%] 328s nipype/interfaces/fsl/tests/test_model.py::test_MultipleRegressDesign SKIPPED [ 52%] 328s nipype/interfaces/fsl/tests/test_preprocess.py::test_bet SKIPPED (fs...) [ 52%] 328s nipype/interfaces/fsl/tests/test_preprocess.py::test_fast SKIPPED (f...) [ 52%] 328s nipype/interfaces/fsl/tests/test_preprocess.py::test_fast_list_outputs SKIPPED [ 52%] 328s nipype/interfaces/fsl/tests/test_preprocess.py::test_flirt SKIPPED (...) [ 52%] 328s nipype/interfaces/fsl/tests/test_preprocess.py::test_mcflirt SKIPPED [ 52%] 328s nipype/interfaces/fsl/tests/test_preprocess.py::test_mcflirt_opt SKIPPED [ 52%] 328s nipype/interfaces/fsl/tests/test_preprocess.py::test_mcflirt_noinput SKIPPED [ 52%] 328s nipype/interfaces/fsl/tests/test_preprocess.py::test_fnirt SKIPPED (...) [ 52%] 328s nipype/interfaces/fsl/tests/test_preprocess.py::test_applywarp SKIPPED [ 52%] 328s nipype/interfaces/fsl/tests/test_preprocess.py::test_fugue[attr0-fmap_out_file] SKIPPED [ 52%] 328s nipype/interfaces/fsl/tests/test_preprocess.py::test_fugue[attr1-shift_out_file] SKIPPED [ 52%] 328s nipype/interfaces/fsl/tests/test_preprocess.py::test_fugue[attr2-unwarped_file] SKIPPED [ 52%] 328s nipype/interfaces/fsl/tests/test_preprocess.py::test_first_genfname SKIPPED [ 52%] 328s nipype/interfaces/fsl/tests/test_utils.py::test_fslroi[None] SKIPPED [ 52%] 328s nipype/interfaces/fsl/tests/test_utils.py::test_fslroi[GIFTI] SKIPPED [ 52%] 328s nipype/interfaces/fsl/tests/test_utils.py::test_fslroi[NIFTI] SKIPPED [ 52%] 328s nipype/interfaces/fsl/tests/test_utils.py::test_fslroi[NIFTI_GZ] SKIPPED [ 52%] 328s nipype/interfaces/fsl/tests/test_utils.py::test_fslroi[NIFTI_PAIR] SKIPPED [ 52%] 328s nipype/interfaces/fsl/tests/test_utils.py::test_fslroi[NIFTI_PAIR_GZ] SKIPPED [ 52%] 328s 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[ 89%] 330s nipype/interfaces/utility/base.py::nipype.interfaces.utility.base PASSED [ 89%] 330s nipype/interfaces/utility/base.py::nipype.interfaces.utility.base.IdentityInterface PASSED [ 89%] 330s nipype/interfaces/utility/base.py::nipype.interfaces.utility.base.Merge PASSED [ 89%] 330s nipype/interfaces/utility/base.py::nipype.interfaces.utility.base.Rename PASSED [ 89%] 330s nipype/interfaces/utility/base.py::nipype.interfaces.utility.base.Select PASSED [ 89%] 330s nipype/interfaces/utility/base.py::nipype.interfaces.utility.base.Split PASSED [ 89%] 330s nipype/interfaces/utility/csv.py::nipype.interfaces.utility.csv.CSVReader SKIPPED [ 89%] 330s nipype/interfaces/utility/tests/test_auto_AssertEqual.py::test_AssertEqual_inputs PASSED [ 89%] 330s nipype/interfaces/utility/tests/test_auto_CSVReader.py::test_CSVReader_inputs PASSED [ 89%] 330s nipype/interfaces/utility/tests/test_auto_CSVReader.py::test_CSVReader_outputs PASSED [ 89%] 330s 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nipype/pipeline/engine/tests/test_utils.py::test_format_node PASSED [ 94%] 351s nipype/pipeline/engine/tests/test_workflows.py::test_init PASSED [ 94%] 351s nipype/pipeline/engine/tests/test_workflows.py::test_connect PASSED [ 94%] 351s nipype/pipeline/engine/tests/test_workflows.py::test_add_nodes PASSED [ 94%] 351s nipype/pipeline/engine/tests/test_workflows.py::test_disconnect PASSED [ 94%] 351s nipype/pipeline/engine/tests/test_workflows.py::test_workflow_add PASSED [ 94%] 351s nipype/pipeline/engine/tests/test_workflows.py::test_doubleconnect PASSED [ 94%] 351s nipype/pipeline/engine/tests/test_workflows.py::test_nested_workflow_doubleconnect PASSED [ 94%] 351s nipype/pipeline/engine/tests/test_workflows.py::test_duplicate_node_check PASSED [ 94%] 351s nipype/pipeline/engine/tests/test_workflows.py::test_outputs_removal_wf[Linear-False-True] PASSED [ 94%] 351s nipype/pipeline/engine/tests/test_workflows.py::test_outputs_removal_wf[Linear-False-False] PASSED [ 94%] 351s nipype/pipeline/engine/tests/test_workflows.py::test_outputs_removal_wf[Linear-True-True] PASSED [ 94%] 351s nipype/pipeline/engine/tests/test_workflows.py::test_outputs_removal_wf[Linear-True-False] PASSED [ 94%] 367s nipype/pipeline/engine/tests/test_workflows.py::test_outputs_removal_wf[MultiProc-False-True] PASSED [ 94%] 385s nipype/pipeline/engine/tests/test_workflows.py::test_outputs_removal_wf[MultiProc-False-False] PASSED [ 94%] 401s nipype/pipeline/engine/tests/test_workflows.py::test_outputs_removal_wf[MultiProc-True-True] PASSED [ 94%] 417s nipype/pipeline/engine/tests/test_workflows.py::test_outputs_removal_wf[MultiProc-True-False] PASSED [ 94%] 417s nipype/pipeline/engine/tests/test_workflows.py::test_config_setting PASSED [ 94%] 417s nipype/pipeline/engine/utils.py::nipype.pipeline.engine.utils.merge_dict PASSED [ 94%] 417s nipype/pipeline/engine/utils.py::nipype.pipeline.engine.utils.synchronize_iterables PASSED [ 94%] 417s nipype/pipeline/engine/utils.py::nipype.pipeline.engine.utils.walk PASSED [ 94%] 417s nipype/pipeline/plugins/sge.py::nipype.pipeline.plugins.sge.qsub_sanitize_job_name PASSED [ 94%] 417s nipype/pipeline/plugins/tests/test_base.py::test_scipy_sparse PASSED [ 94%] 417s nipype/pipeline/plugins/tests/test_callback.py::test_callback_normal[Linear] PASSED [ 94%] 423s nipype/pipeline/plugins/tests/test_callback.py::test_callback_normal[MultiProc] PASSED [ 95%] 427s nipype/pipeline/plugins/tests/test_callback.py::test_callback_normal[LegacyMultiProc] PASSED [ 95%] 427s nipype/pipeline/plugins/tests/test_callback.py::test_callback_exception[False-Linear] PASSED [ 95%] 432s nipype/pipeline/plugins/tests/test_callback.py::test_callback_exception[False-MultiProc] PASSED [ 95%] 437s nipype/pipeline/plugins/tests/test_callback.py::test_callback_exception[False-LegacyMultiProc] PASSED [ 95%] 437s nipype/pipeline/plugins/tests/test_callback.py::test_callback_exception[True-Linear] PASSED [ 95%] 439s nipype/pipeline/plugins/tests/test_callback.py::test_callback_exception[True-MultiProc] PASSED [ 95%] 442s nipype/pipeline/plugins/tests/test_callback.py::test_callback_exception[True-LegacyMultiProc] PASSED [ 95%] 442s nipype/pipeline/plugins/tests/test_callback.py::test_callback_gantt[Linear] PASSED [ 95%] 446s nipype/pipeline/plugins/tests/test_callback.py::test_callback_gantt[MultiProc] PASSED [ 95%] 452s nipype/pipeline/plugins/tests/test_callback.py::test_callback_gantt[LegacyMultiProc] PASSED [ 95%] 452s nipype/pipeline/plugins/tests/test_debug.py::test_debug PASSED [ 95%] 452s nipype/pipeline/plugins/tests/test_legacymultiproc_nondaemon.py::test_run_multiproc_nondaemon_false SKIPPED [ 95%] 452s nipype/pipeline/plugins/tests/test_legacymultiproc_nondaemon.py::test_run_multiproc_nondaemon_true SKIPPED [ 95%] 452s nipype/pipeline/plugins/tests/test_linear.py::test_run_in_series PASSED [ 95%] 452s nipype/pipeline/plugins/tests/test_multiproc.py::test_run_multiproc SKIPPED [ 95%] 452s nipype/pipeline/plugins/tests/test_multiproc.py::test_no_more_memory_than_specified PASSED [ 95%] 452s nipype/pipeline/plugins/tests/test_multiproc.py::test_no_more_threads_than_specified PASSED [ 95%] 452s nipype/pipeline/plugins/tests/test_multiproc.py::test_no_more_gpu_threads_than_specified PASSED [ 95%] 452s nipype/pipeline/plugins/tests/test_multiproc.py::test_hold_job_until_procs_available SKIPPED [ 95%] 452s nipype/pipeline/plugins/tests/test_oar.py::test_run_oargraph SKIPPED [ 95%] 452s nipype/pipeline/plugins/tests/test_pbs.py::test_run_pbsgraph SKIPPED [ 95%] 456s nipype/pipeline/plugins/tests/test_sgelike.py::test_crashfile_creation PASSED [ 95%] 456s nipype/pipeline/plugins/tests/test_somaflow.py::test_run_somaflow SKIPPED [ 95%] 456s nipype/pipeline/plugins/tests/test_tools.py::test_report_crash PASSED [ 95%] 456s nipype/testing/tests/test_utils.py::test_tempfatfs SKIPPED (Cannot m...) [ 95%] 456s nipype/testing/tests/test_utils.py::test_tempfatfs_calledprocesserror PASSED [ 95%] 456s nipype/testing/tests/test_utils.py::test_tempfatfs_oserror PASSED [ 95%] 456s nipype/tests/test_nipype.py::test_nipype_info PASSED [ 95%] 456s nipype/tests/test_nipype.py::test_git_hash SKIPPED (not able to get ...) [ 95%] 456s nipype/tests/test_nipype.py::test_no_et_bare PASSED [ 96%] 458s nipype/tests/test_nipype.py::test_no_et_multiproc[True-MultiProc] PASSED [ 96%] 460s nipype/tests/test_nipype.py::test_no_et_multiproc[True-LegacyMultiProc] PASSED [ 96%] 464s nipype/tests/test_nipype.py::test_no_et_multiproc[False-MultiProc] PASSED [ 96%] 468s nipype/tests/test_nipype.py::test_no_et_multiproc[False-LegacyMultiProc] PASSED [ 96%] 468s nipype/tests/test_sample.py::test_basic PASSED [ 96%] 468s nipype/utils/docparse.py::nipype.utils.docparse.insert_doc PASSED [ 96%] 468s nipype/utils/filemanip.py::nipype.utils.filemanip.fname_presuffix PASSED [ 96%] 468s nipype/utils/filemanip.py::nipype.utils.filemanip.hash_infile PASSED [ 96%] 468s nipype/utils/filemanip.py::nipype.utils.filemanip.read_stream PASSED [ 96%] 468s nipype/utils/filemanip.py::nipype.utils.filemanip.split_filename PASSED [ 96%] 468s nipype/utils/matlabtools.py::nipype.utils.matlabtools.mlab_tempfile PASSED [ 96%] 468s nipype/utils/misc.py::nipype.utils.misc.str2bool PASSED [ 96%] 468s nipype/utils/onetime.py::nipype.utils.onetime.setattr_on_read PASSED [ 96%] 468s nipype/utils/tests/test_cmd.py::TestNipypeCMD::test_main_returns_2_on_empty PASSED [ 96%] 468s nipype/utils/tests/test_cmd.py::TestNipypeCMD::test_main_returns_0_on_help PASSED [ 96%] 468s nipype/utils/tests/test_cmd.py::TestNipypeCMD::test_list_nipy_interfacesp PASSED [ 96%] 468s nipype/utils/tests/test_config.py::test_display_parse[:12] PASSED [ 96%] 469s nipype/utils/tests/test_config.py::test_display_parse[localhost:12] PASSED [ 96%] 469s nipype/utils/tests/test_config.py::test_display_parse[localhost:12.1] PASSED [ 96%] 469s nipype/utils/tests/test_config.py::test_display_config[0] PASSED [ 96%] 469s nipype/utils/tests/test_config.py::test_display_config[1] PASSED [ 96%] 469s nipype/utils/tests/test_config.py::test_display_config[2] PASSED [ 96%] 469s nipype/utils/tests/test_config.py::test_display_config[3] PASSED [ 96%] 469s nipype/utils/tests/test_config.py::test_display_config[4] PASSED [ 96%] 469s nipype/utils/tests/test_config.py::test_display_system[0] PASSED [ 96%] 469s nipype/utils/tests/test_config.py::test_display_system[1] PASSED [ 96%] 469s nipype/utils/tests/test_config.py::test_display_system[2] PASSED [ 96%] 469s nipype/utils/tests/test_config.py::test_display_system[3] PASSED [ 96%] 469s nipype/utils/tests/test_config.py::test_display_system[4] PASSED [ 96%] 469s nipype/utils/tests/test_config.py::test_display_config_and_system PASSED [ 97%] 469s nipype/utils/tests/test_config.py::test_display_noconfig_nosystem_patched PASSED [ 97%] 469s nipype/utils/tests/test_config.py::test_display_empty_patched PASSED [ 97%] 469s nipype/utils/tests/test_config.py::test_display_noconfig_nosystem_patched_oldxvfbwrapper PASSED [ 97%] 469s nipype/utils/tests/test_config.py::test_display_empty_patched_oldxvfbwrapper PASSED [ 97%] 469s nipype/utils/tests/test_config.py::test_display_noconfig_nosystem_notinstalled PASSED [ 97%] 469s nipype/utils/tests/test_config.py::test_display_empty_notinstalled PASSED [ 97%] 469s nipype/utils/tests/test_config.py::test_display_noconfig_nosystem_installed SKIPPED [ 97%] 469s nipype/utils/tests/test_config.py::test_display_empty_installed SKIPPED [ 97%] 469s nipype/utils/tests/test_config.py::test_display_empty_macosx PASSED [ 97%] 469s nipype/utils/tests/test_config.py::test_cwd_cached PASSED [ 97%] 469s nipype/utils/tests/test_config.py::test_debug_mode PASSED [ 97%] 469s nipype/utils/tests/test_docparse.py::test_rev_opt_map PASSED [ 97%] 469s nipype/utils/tests/test_docparse.py::test_build_doc PASSED [ 97%] 469s nipype/utils/tests/test_docparse.py::test_insert_doc PASSED [ 97%] 469s nipype/utils/tests/test_filemanip.py::test_split_filename[foo.nii-split0] PASSED [ 97%] 469s nipype/utils/tests/test_filemanip.py::test_split_filename[foo.nii.gz-split1] PASSED [ 97%] 469s nipype/utils/tests/test_filemanip.py::test_split_filename[foo.niml.dset-split2] PASSED [ 97%] 469s nipype/utils/tests/test_filemanip.py::test_split_filename[/usr/local/foo.nii.gz-split3] PASSED [ 97%] 469s nipype/utils/tests/test_filemanip.py::test_split_filename[../usr/local/foo.nii-split4] PASSED [ 97%] 469s nipype/utils/tests/test_filemanip.py::test_split_filename[/usr/local/foo.a.b.c.d-split5] PASSED [ 97%] 469s nipype/utils/tests/test_filemanip.py::test_split_filename[/usr/local/-split6] PASSED [ 97%] 469s nipype/utils/tests/test_filemanip.py::test_fname_presuffix PASSED [ 97%] 469s nipype/utils/tests/test_filemanip.py::test_fnames_presuffix PASSED [ 97%] 469s nipype/utils/tests/test_filemanip.py::test_hash_rename[foobar.nii-foobar_0xabc123.nii] PASSED [ 97%] 469s nipype/utils/tests/test_filemanip.py::test_hash_rename[foobar.nii.gz-foobar_0xabc123.nii.gz] PASSED [ 97%] 469s nipype/utils/tests/test_filemanip.py::test_check_forhash PASSED [ 97%] 469s nipype/utils/tests/test_filemanip.py::test_copyfile PASSED [ 97%] 469s nipype/utils/tests/test_filemanip.py::test_copyfile_true PASSED [ 97%] 469s nipype/utils/tests/test_filemanip.py::test_copyfiles PASSED [ 97%] 469s nipype/utils/tests/test_filemanip.py::test_linkchain PASSED [ 98%] 469s nipype/utils/tests/test_filemanip.py::test_recopy PASSED [ 98%] 469s nipype/utils/tests/test_filemanip.py::test_copyfallback SKIPPED (Fus...) [ 98%] 469s nipype/utils/tests/test_filemanip.py::test_get_related_files PASSED [ 98%] 469s nipype/utils/tests/test_filemanip.py::test_get_related_files_noninclusive PASSED [ 98%] 469s nipype/utils/tests/test_filemanip.py::test_ensure_list[foo.nii-expected0] PASSED [ 98%] 469s nipype/utils/tests/test_filemanip.py::test_ensure_list[filename1-expected1] PASSED [ 98%] 469s nipype/utils/tests/test_filemanip.py::test_ensure_list[filename2-expected2] PASSED [ 98%] 469s nipype/utils/tests/test_filemanip.py::test_ensure_list[12.34-None] PASSED [ 98%] 469s nipype/utils/tests/test_filemanip.py::test_simplify_list[list0-foo.nii] PASSED [ 98%] 469s nipype/utils/tests/test_filemanip.py::test_simplify_list[list1-expected1] PASSED [ 98%] 471s nipype/utils/tests/test_filemanip.py::test_check_depends PASSED [ 98%] 471s nipype/utils/tests/test_filemanip.py::test_json PASSED [ 98%] 471s nipype/utils/tests/test_filemanip.py::test_related_files[/path/test.img-3-expected_files0] PASSED [ 98%] 471s nipype/utils/tests/test_filemanip.py::test_related_files[/path/test.hdr-3-expected_files1] PASSED [ 98%] 471s nipype/utils/tests/test_filemanip.py::test_related_files[/path/test.BRIK-2-expected_files2] PASSED [ 98%] 471s nipype/utils/tests/test_filemanip.py::test_related_files[/path/test.HEAD-2-expected_files3] PASSED [ 98%] 471s nipype/utils/tests/test_filemanip.py::test_related_files[/path/foo.nii-2-expected_files4] PASSED [ 98%] 471s nipype/utils/tests/test_filemanip.py::test_parse_mount_table[sysfs on /sys type sysfs (rw,nosuid,nodev,noexec,relatime)\nproc on /proc type proc (rw,nosuid,nodev,noexec,relatime)\nudev on /dev type devtmpfs (rw,nosuid,relatime,size=8121732k,nr_inodes=2030433,mode=755)\ndevpts on /dev/pts type devpts (rw,nosuid,noexec,relatime,gid=5,mode=620,ptmxmode=000)\ntmpfs on /run type tmpfs (rw,nosuid,noexec,relatime,size=1628440k,mode=755)\n/dev/nvme0n1p2 on / type ext4 (rw,relatime,errors=remount-ro,data=ordered)\nsecurityfs on /sys/kernel/security type securityfs (rw,nosuid,nodev,noexec,relatime)\ntmpfs on /dev/shm type tmpfs (rw,nosuid,nodev)\ntmpfs on /sys/fs/cgroup type tmpfs (ro,nosuid,nodev,noexec,mode=755)\ncgroup on /sys/fs/cgroup/systemd type cgroup (rw,nosuid,nodev,noexec,relatime,xattr,release_agent=/lib/systemd/systemd-cgroups-agent,name=systemd)\npstore on /sys/fs/pstore type pstore (rw,nosuid,nodev,noexec,relatime)\nefivarfs on /sys/firmware/efi/efivars type efivarfs (rw,nosuid,nodev,noexec,relatime)\ncgroup on /sys/fs/cgroup/cpu,cpuacct type cgroup (rw,nosuid,nodev,noexec,relatime,cpu,cpuacct)\ncgroup on /sys/fs/cgroup/freezer type cgroup (rw,nosuid,nodev,noexec,relatime,freezer)\ncgroup on /sys/fs/cgroup/pids type cgroup (rw,nosuid,nodev,noexec,relatime,pids)\ncgroup on /sys/fs/cgroup/cpuset type cgroup (rw,nosuid,nodev,noexec,relatime,cpuset)\nsystemd-1 on /proc/sys/fs/binfmt_misc type autofs (rw,relatime,fd=26,pgrp=1,timeout=0,minproto=5,maxproto=5,direct)\nhugetlbfs on /dev/hugepages type hugetlbfs (rw,relatime)\ndebugfs on /sys/kernel/debug type debugfs (rw,relatime)\nmqueue on /dev/mqueue type mqueue (rw,relatime)\nfusectl on /sys/fs/fuse/connections type fusectl (rw,relatime)\n/dev/nvme0n1p1 on /boot/efi type vfat (rw,relatime,fmask=0077,dmask=0077,codepage=437,iocharset=iso8859-1,shortname=mixed,errors=remount-ro)\n/dev/nvme0n1p2 on /var/lib/docker/aufs type ext4 (rw,relatime,errors=remount-ro,data=ordered)\ngvfsd-fuse on /run/user/1002/gvfs type fuse.gvfsd-fuse (rw,nosuid,nodev,relatime,user_id=1002,group_id=1002)\n-0-expected0] PASSED [ 98%] 471s nipype/utils/tests/test_filemanip.py::test_parse_mount_table[/dev/disk2 on / (hfs, local, journaled)\ndevfs on /dev (devfs, local, nobrowse)\nmap -hosts on /net (autofs, nosuid, automounted, nobrowse)\nmap auto_home on /home (autofs, automounted, nobrowse)\nmap -fstab on /Network/Servers (autofs, automounted, nobrowse)\n/dev/disk3s2 on /Volumes/MyBookData (hfs, local, nodev, nosuid, journaled)\nafni:/elrond0 on /Volumes/afni (nfs)\nafni:/var/www/INCOMING on /Volumes/INCOMING (nfs)\nafni:/fraid on /Volumes/afni (nfs, asynchronous)\nboromir:/raid.bot on /Volumes/raid.bot (nfs)\nelros:/volume2/AFNI_SHARE on /Volumes/AFNI_SHARE (nfs)\nmap -static on /Volumes/safni (autofs, automounted, nobrowse)\nmap -static on /Volumes/raid.top (autofs, automounted, nobrowse)\n/dev/disk1s3 on /Volumes/Boot OS X (hfs, local, journaled, nobrowse)\n-0-expected1] PASSED [ 98%] 471s nipype/utils/tests/test_filemanip.py::test_parse_mount_table[-1-expected2] PASSED [ 98%] 471s nipype/utils/tests/test_filemanip.py::test_parse_mount_table[sysfs on /sys type sysfs (rw,nosuid,nodev,noexec,relatime)\nproc on /proc type proc (rw,nosuid,nodev,noexec,relatime)\nudev on /dev type devtmpfs (rw,nosuid,relatime,size=8121732k,nr_inodes=2030433,mode=755)\ndevpts on /dev/pts type devpts (rw,nosuid,noexec,relatime,gid=5,mode=620,ptmxmode=000)\ntmpfs on /run type tmpfs (rw,nosuid,noexec,relatime,size=1628440k,mode=755)\n/dev/nvme0n1p2 on / type ext4 (rw,relatime,errors=remount-ro,data=ordered)\nsecurityfs on /sys/kernel/security type securityfs (rw,nosuid,nodev,noexec,relatime)\ntmpfs on /dev/shm type tmpfs (rw,nosuid,nodev)\ntmpfs on /sys/fs/cgroup type tmpfs (ro,nosuid,nodev,noexec,mode=755)\ncgroup on /sys/fs/cgroup/systemd type cgroup (rw,nosuid,nodev,noexec,relatime,xattr,release_agent=/lib/systemd/systemd-cgroups-agent,name=systemd)\npstore on /sys/fs/pstore type pstore (rw,nosuid,nodev,noexec,relatime)\nefivarfs on /sys/firmware/efi/efivars type efivarfs (rw,nosuid,nodev,noexec,relatime)\ncgroup on /sys/fs/cgroup/cpu,cpuacct type cgroup (rw,nosuid,nodev,noexec,relatime,cpu,cpuacct)\ncgroup on /sys/fs/cgroup/freezer type cgroup (rw,nosuid,nodev,noexec,relatime,freezer)\ncgroup on /sys/fs/cgroup/pids type cgroup (rw,nosuid,nodev,noexec,relatime,pids)\ncgroup on /sys/fs/cgroup/cpuset type cgroup (rw,nosuid,nodev,noexec,relatime,cpuset)\nsystemd-1 on /proc/sys/fs/binfmt_misc type autofs (rw,relatime,fd=26,pgrp=1,timeout=0,minproto=5,maxproto=5,direct)\nhugetlbfs on /dev/hugepages type hugetlbfs (rw,relatime)\ndebugfs on /sys/kernel/debug type debugfs (rw,relatime)\nmqueue on /dev/mqueue type mqueue (rw,relatime)\nfusectl on /sys/fs/fuse/connections type fusectl (rw,relatime)\n/dev/nvme0n1p1 on /boot/efi type vfat (rw,relatime,fmask=0077,dmask=0077,codepage=437,iocharset=iso8859-1,shortname=mixed,errors=remount-ro)\n/dev/nvme0n1p2 on /var/lib/docker/aufs type ext4 (rw,relatime,errors=remount-ro,data=ordered)\ngvfsd-fuse on /run/user/1002/gvfs type fuse.gvfsd-fuse (rw,nosuid,nodev,relatime,user_id=1002,group_id=1002)\n-0-expected3] PASSED [ 98%] 471s nipype/utils/tests/test_filemanip.py::test_parse_mount_table[/dev/disk2 on / (hfs, local, journaled)\ndevfs on /dev (devfs, local, nobrowse)\nafni:/elrond0 on /Volumes/afni (cifs)\nafni:/var/www/INCOMING on /Volumes/INCOMING (nfs)\nafni:/fraid on /Volumes/afni/fraid (nfs, asynchronous)\nboromir:/raid.bot on /Volumes/raid.bot (nfs)\nelros:/volume2/AFNI_SHARE on /Volumes/AFNI_SHARE (nfs)\n-0-expected4] PASSED [ 98%] 471s nipype/utils/tests/test_filemanip.py::test_parse_mount_table[overlay on / type overlay (rw,relatime,lowerdir=/var/lib/docker/overlay2/l/26UTYITLF24YE7KEGTMHUNHPPG:/var/lib/docker/overlay2/l/SWGNP3T2EEB4CNBJFN3SDZLXHP,upperdir=/var/lib/docker/overlay2/a4c54ab1aa031bb5a14a424abd655510521e183ee4fa4158672e8376c89df394/diff,workdir=/var/lib/docker/overlay2/a4c54ab1aa031bb5a14a424abd655510521e183ee4fa4158672e8376c89df394/work)\nproc on /proc type proc (rw,nosuid,nodev,noexec,relatime)\ntmpfs on /dev type tmpfs (rw,nosuid,size=65536k,mode=755)\ndevpts on /dev/pts type devpts (rw,nosuid,noexec,relatime,gid=5,mode=620,ptmxmode=666)\nsysfs on /sys type sysfs (ro,nosuid,nodev,noexec,relatime)\ntmpfs on /sys/fs/cgroup type tmpfs (ro,nosuid,nodev,noexec,relatime,mode=755)\ncpuset on /sys/fs/cgroup/cpuset type cgroup (ro,nosuid,nodev,noexec,relatime,cpuset)\ncpu on /sys/fs/cgroup/cpu type cgroup (ro,nosuid,nodev,noexec,relatime,cpu)\ncpuacct on /sys/fs/cgroup/cpuacct type cgroup (ro,nosuid,nodev,noexec,relatime,cpuacct)\nblkio on /sys/fs/cgroup/blkio type cgroup (ro,nosuid,nodev,noexec,relatime,blkio)\nmemory on /sys/fs/cgroup/memory type cgroup (ro,nosuid,nodev,noexec,relatime,memory)\ndevices on /sys/fs/cgroup/devices type cgroup (ro,nosuid,nodev,noexec,relatime,devices)\nfreezer on /sys/fs/cgroup/freezer type cgroup (ro,nosuid,nodev,noexec,relatime,freezer)\nnet_cls on /sys/fs/cgroup/net_cls type cgroup (ro,nosuid,nodev,noexec,relatime,net_cls)\nperf_event on /sys/fs/cgroup/perf_event type cgroup (ro,nosuid,nodev,noexec,relatime,perf_event)\nnet_prio on /sys/fs/cgroup/net_prio type cgroup (ro,nosuid,nodev,noexec,relatime,net_prio)\nhugetlb on /sys/fs/cgroup/hugetlb type cgroup (ro,nosuid,nodev,noexec,relatime,hugetlb)\npids on /sys/fs/cgroup/pids type cgroup (ro,nosuid,nodev,noexec,relatime,pids)\ncgroup on /sys/fs/cgroup/systemd type cgroup (ro,nosuid,nodev,noexec,relatime,name=systemd)\nmqueue on /dev/mqueue type mqueue (rw,nosuid,nodev,noexec,relatime)\n//10.0.75.1/C on /data type cifs (rw,relatime,vers=3.02,sec=ntlmsspi,cache=strict,username=filo,domain=MSI,uid=0,noforceuid,gid=0,noforcegid,addr=10.0.75.1,file_mode=0755,dir_mode=0755,iocharset=utf8,nounix,serverino,mapposix,nobrl,mfsymlinks,noperm,rsize=1048576,wsize=1048576,echo_interval=60,actimeo=1)\n/dev/sda1 on /etc/resolv.conf type ext4 (rw,relatime,data=ordered)\n/dev/sda1 on /etc/hostname type ext4 (rw,relatime,data=ordered)\n/dev/sda1 on /etc/hosts type ext4 (rw,relatime,data=ordered)\nshm on /dev/shm type tmpfs (rw,nosuid,nodev,noexec,relatime,size=65536k)\ndevpts on /dev/console type devpts (rw,nosuid,noexec,relatime,gid=5,mode=620,ptmxmode=666)\nproc on /proc/bus type proc (ro,relatime)\nproc on /proc/fs type proc (ro,relatime)\nproc on /proc/irq type proc (ro,relatime)\nproc on /proc/sys type proc (ro,relatime)\nproc on /proc/sysrq-trigger type proc (ro,relatime)\ntmpfs on /proc/kcore type tmpfs (rw,nosuid,size=65536k,mode=755)\ntmpfs on /proc/timer_list type tmpfs (rw,nosuid,size=65536k,mode=755)\ntmpfs on /proc/sched_debug type tmpfs (rw,nosuid,size=65536k,mode=755)\ntmpfs on /proc/scsi type tmpfs (ro,relatime)\ntmpfs on /sys/firmware type tmpfs (ro,relatime)\n-0-expected5] PASSED [ 98%] 471s nipype/utils/tests/test_filemanip.py::test_parse_mount_table[/proc on /proc type proc (rw,relatime)\nsysfs on /sys type sysfs (rw,nosuid,nodev,noexec,relatime)\ntmpfs on /dev/shm type tmpfs (rw,relatime)\ndevpts on /dev/pts type devpts (rw,nosuid,noexec,relatime,gid=5,mode=620,ptmxmode=666)\n\ndevpts on /dev/ptmx type devpts (rw,nosuid,noexec,relatime,gid=5,mode=620,ptmxmode=666)\n\n-0-expected6] PASSED [ 98%] 471s nipype/utils/tests/test_filemanip.py::test_cifs_check PASSED [ 98%] 471s nipype/utils/tests/test_filemanip.py::test_indirectory PASSED [ 98%] 471s nipype/utils/tests/test_filemanip.py::test_pklization PASSED [ 98%] 471s nipype/utils/tests/test_filemanip.py::test_versioned_pklization PASSED [ 98%] 471s nipype/utils/tests/test_filemanip.py::test_unversioned_pklization PASSED [ 98%] 471s nipype/utils/tests/test_filemanip.py::test_path_strict_resolve PASSED [ 99%] 471s nipype/utils/tests/test_filemanip.py::test_pickle[True] PASSED [ 99%] 471s nipype/utils/tests/test_filemanip.py::test_pickle[False] PASSED [ 99%] 471s nipype/utils/tests/test_filemanip.py::test_write_rst_list[- \n\n] PASSED [ 99%] 471s nipype/utils/tests/test_filemanip.py::test_write_rst_list[A string- A string\n\n] PASSED [ 99%] 471s nipype/utils/tests/test_filemanip.py::test_write_rst_list[items2- A list\n Of strings\n\n] PASSED [ 99%] 471s nipype/utils/tests/test_filemanip.py::test_write_rst_list[None-TypeError] PASSED [ 99%] 471s nipype/utils/tests/test_filemanip.py::test_emptydirs_dangling_nfs PASSED [ 99%] 471s nipype/utils/tests/test_functions.py::test_func_to_str PASSED [ 99%] 471s nipype/utils/tests/test_functions.py::test_func_to_str_err PASSED [ 99%] 471s nipype/utils/tests/test_functions.py::test_func_string PASSED [ 99%] 471s nipype/utils/tests/test_functions.py::test_func_print PASSED [ 99%] 471s nipype/utils/tests/test_imagemanip.py::test_copy_header[True] PASSED [ 99%] 471s nipype/utils/tests/test_imagemanip.py::test_copy_header[False] PASSED [ 99%] 471s nipype/utils/tests/test_misc.py::test_cont_to_str PASSED [ 99%] 471s nipype/utils/tests/test_misc.py::test_str2bool[yes-True] PASSED [ 99%] 471s nipype/utils/tests/test_misc.py::test_str2bool[true-True] PASSED [ 99%] 471s nipype/utils/tests/test_misc.py::test_str2bool[t-True] PASSED [ 99%] 471s nipype/utils/tests/test_misc.py::test_str2bool[1-True] PASSED [ 99%] 471s nipype/utils/tests/test_misc.py::test_str2bool[no-False] PASSED [ 99%] 471s nipype/utils/tests/test_misc.py::test_str2bool[false-False] PASSED [ 99%] 471s nipype/utils/tests/test_misc.py::test_str2bool[n-False] PASSED [ 99%] 471s nipype/utils/tests/test_misc.py::test_str2bool[f-False] PASSED [ 99%] 471s nipype/utils/tests/test_misc.py::test_str2bool[0-False] PASSED [ 99%] 471s nipype/utils/tests/test_misc.py::test_flatten PASSED [ 99%] 471s nipype/utils/tests/test_misc.py::test_rgetcwd PASSED [ 99%] 471s nipype/utils/tests/test_misc.py::test_dict_diff PASSED [ 99%] 471s nipype/utils/tests/test_nipype2boutiques.py::test_generate PASSED [ 99%] 471s nipype/utils/tests/test_provenance.py::test_provenance SKIPPED (Test...) [ 99%] 471s nipype/utils/tests/test_provenance.py::test_provenance_exists SKIPPED [ 99%] 472s nipype/utils/tests/test_provenance.py::test_safe_encode PASSED [100%] 472s 472s =================================== FAILURES =================================== 472s _______________________________ test_provenance ________________________________ 472s 472s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-1/test_provenance0') 472s 472s def test_provenance(tmpdir): 472s metawf = pe.Workflow(name="meta") 472s metawf.base_dir = tmpdir.strpath 472s metawf.add_nodes([create_wf("wf%d" % i) for i in range(1)]) 472s eg = metawf.run(plugin="Linear") 472s prov_base = tmpdir.join("workflow_provenance_test").strpath 472s > psg = write_workflow_prov(eg, prov_base, format="all") 472s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 472s 472s /tmp/autopkgtest.W73JGv/autopkgtest_tmp/nipype/pipeline/engine/tests/test_utils.py:161: 472s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 472s /tmp/autopkgtest.W73JGv/autopkgtest_tmp/nipype/pipeline/engine/utils.py:1609: in write_workflow_prov 472s ps.write_provenance(filename, format=format) 472s /tmp/autopkgtest.W73JGv/autopkgtest_tmp/nipype/utils/provenance.py:455: in write_provenance 472s self.g.serialize(filename + ext, format="rdf", rdf_format=rdf_format) 472s /usr/lib/python3/dist-packages/prov/model.py:2727: in serialize 472s serializer = serializers.get(format)(self) 472s ^^^^^^^^^^^^^^^^^^^^^^^ 472s /usr/lib/python3/dist-packages/prov/serializers/__init__.py:83: in get 472s Registry.load_serializers() 472s /usr/lib/python3/dist-packages/prov/serializers/__init__.py:67: in load_serializers 472s from prov.serializers.provrdf import ProvRDFSerializer 472s /usr/lib/python3/dist-packages/prov/serializers/provrdf.py:15: in 472s from rdflib.graph import ConjunctiveGraph # type: ignore[import-not-found] 472s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 472s /usr/lib/python3/dist-packages/rdflib/__init__.py:168: in 472s from rdflib.graph import ConjunctiveGraph, Dataset, Graph 472s /usr/lib/python3/dist-packages/rdflib/graph.py:292: in 472s from rdflib.resource import Resource 472s /usr/lib/python3/dist-packages/rdflib/resource.py:296: in 472s class Resource: 472s /usr/lib/python3/dist-packages/rdflib/resource.py:379: in Resource 472s def value(self, p=RDF.value, o=None, default=None, any=True): 472s ^^^^^^^^^ 472s /usr/lib/python3/dist-packages/rdflib/namespace/__init__.py:285: in __getattr__ 472s return cls.__getitem__(name) 472s ^^^^^^^^^^^^^^^^^^^^^ 472s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 472s 472s cls = Namespace(Namespace('http://www.w3.org/1999/02/22-rdf-syntax-ns#')) 472s name = 'value', default = None 472s 472s @lru_cache(maxsize=None) 472s def __getitem__(cls, name: str, default=None) -> URIRef: 472s name = str(name) 472s 472s if name in _DFNS_RESERVED_ATTRS: 472s raise KeyError( 472s f"DefinedNamespace like object has no access item named {name!r}" 472s ) 472s elif name in _IGNORED_ATTR_LOOKUP: 472s raise KeyError() 472s if (cls._warn or cls._fail) and name not in cls: 472s if cls._fail: 472s > raise AttributeError(f"term '{name}' not in namespace '{cls._NS}'") 472s E AttributeError: term 'value' not in namespace 'http://www.w3.org/1999/02/22-rdf-syntax-ns#' 472s 472s /usr/lib/python3/dist-packages/rdflib/namespace/__init__.py:268: AttributeError 472s ----------------------------- Captured stdout call ----------------------------- 472s 260122-19:17:21,227 nipype.workflow INFO: 472s Workflow meta settings: ['check', 'execution', 'logging', 'monitoring'] 472s 260122-19:17:21,230 nipype.workflow INFO: 472s Running serially. 472s 260122-19:17:21,230 nipype.workflow INFO: 472s [Node] Setting-up "meta.wf0.proc" in "/tmp/pytest-of-ubuntu/pytest-1/test_provenance0/meta/wf0/_fwhm_0/proc". 472s 260122-19:17:21,231 nipype.workflow INFO: 472s [Node] Executing "proc" 472s 260122-19:17:21,232 nipype.workflow INFO: 472s [Node] Finished "proc", elapsed time 0.000292s. 472s 260122-19:17:21,233 nipype.workflow INFO: 472s [Node] Setting-up "meta.wf0.proc2" in "/tmp/pytest-of-ubuntu/pytest-1/test_provenance0/meta/wf0/_fwhm_0/_fwhm_0/proc2". 472s 260122-19:17:21,234 nipype.workflow INFO: 472s [Node] Executing "proc2" 472s 260122-19:17:21,235 nipype.workflow INFO: 472s [Node] Finished "proc2", elapsed time 0.000252s. 472s ------------------------------ Captured log call ------------------------------- 472s INFO nipype.workflow:workflows.py:613 Workflow meta settings: ['check', 'execution', 'logging', 'monitoring'] 472s INFO nipype.workflow:linear.py:31 Running serially. 472s INFO nipype.workflow:nodes.py:451 [Node] Setting-up "meta.wf0.proc" in "/tmp/pytest-of-ubuntu/pytest-1/test_provenance0/meta/wf0/_fwhm_0/proc". 472s INFO nipype.workflow:nodes.py:714 [Node] Executing "proc" 472s INFO nipype.workflow:nodes.py:721 [Node] Finished "proc", elapsed time 0.000292s. 472s INFO nipype.workflow:nodes.py:451 [Node] Setting-up "meta.wf0.proc2" in "/tmp/pytest-of-ubuntu/pytest-1/test_provenance0/meta/wf0/_fwhm_0/_fwhm_0/proc2". 472s INFO nipype.workflow:nodes.py:714 [Node] Executing "proc2" 472s INFO nipype.workflow:nodes.py:721 [Node] Finished "proc2", elapsed time 0.000252s. 472s =============================== warnings summary =============================== 472s ../../../usr/lib/python3/dist-packages/traits/observation/_generated_parser.py:258 472s /usr/lib/python3/dist-packages/traits/observation/_generated_parser.py:258: DeprecationWarning: module 'sre_parse' is deprecated 472s import sre_parse 472s 472s ../../../usr/lib/python3/dist-packages/traits/observation/_generated_parser.py:259 472s /usr/lib/python3/dist-packages/traits/observation/_generated_parser.py:259: DeprecationWarning: module 'sre_constants' is deprecated 472s import sre_constants 472s 472s ../../../usr/lib/python3/dist-packages/_pytest/config/__init__.py:1428 472s /usr/lib/python3/dist-packages/_pytest/config/__init__.py:1428: PytestConfigWarning: Unknown config option: env 472s 472s self._warn_or_fail_if_strict(f"Unknown config option: {key}\n") 472s 472s ../../../usr/lib/python3/dist-packages/dipy/align/streamwarp.py:15 472s /usr/lib/python3/dist-packages/dipy/align/streamwarp.py:15: UserWarning: You do not have FURY installed. Some visualization functions might not work for you. Please install or upgrade FURY using pip install -U fury. For detailed installation instructions visit: https://fury.gl/ 472s from dipy.viz.plotting import bundle_shape_profile 472s 472s nipype/pipeline/engine/tests/test_nodes.py:319 472s /tmp/autopkgtest.W73JGv/autopkgtest_tmp/nipype/pipeline/engine/tests/test_nodes.py:319: PytestUnknownMarkWarning: Unknown pytest.mark.timeout - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html 472s @pytest.mark.timeout(30) 472s 472s nipype/pipeline/plugins/tests/test_oar.py:33 472s /tmp/autopkgtest.W73JGv/autopkgtest_tmp/nipype/pipeline/plugins/tests/test_oar.py:33: PytestUnknownMarkWarning: Unknown pytest.mark.timeout - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html 472s @pytest.mark.timeout(60) 472s 472s nipype/pipeline/plugins/tests/test_pbs.py:32 472s /tmp/autopkgtest.W73JGv/autopkgtest_tmp/nipype/pipeline/plugins/tests/test_pbs.py:32: PytestUnknownMarkWarning: Unknown pytest.mark.timeout - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html 472s @pytest.mark.timeout(60) 472s 472s nipype/utils/tests/test_provenance.py:16 472s /tmp/autopkgtest.W73JGv/autopkgtest_tmp/nipype/utils/tests/test_provenance.py:16: PytestUnknownMarkWarning: Unknown pytest.mark.timeout - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html 472s @pytest.mark.timeout(60) 472s 472s nipype/utils/tests/test_provenance.py:29 472s /tmp/autopkgtest.W73JGv/autopkgtest_tmp/nipype/utils/tests/test_provenance.py:29: PytestUnknownMarkWarning: Unknown pytest.mark.timeout - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html 472s @pytest.mark.timeout(60) 472s 472s nipype/workflows/__init__.py:27 472s /tmp/autopkgtest.W73JGv/autopkgtest_tmp/nipype/workflows/__init__.py:27: UserWarning: Nipype 1 workflows have been moved to the niflow-nipype1-workflows package. pip install niflow-nipype1-workflows to continue using them. 472s warnings.warn(" ".join(_msg)) 472s 472s algorithms/tests/test_CompCor.py::TestCompCor::test_tcompcor_asymmetric_dim 472s /tmp/autopkgtest.W73JGv/autopkgtest_tmp/nipype/algorithms/confounds.py:1453: RuntimeWarning: invalid value encountered in divide 472s variance_explained = (s**2) / np.sum(s**2) 472s 472s interfaces/ants/utils.py::nipype.interfaces.ants.utils.ImageMath 472s /tmp/autopkgtest.W73JGv/autopkgtest_tmp/nipype/interfaces/ants/utils.py:216: UserWarning: copy_header cannot be updated to True with PadImage as operation. 472s warn( 472s 472s interfaces/dipy/tests/test_base.py::test_get_default_args 472s /tmp/autopkgtest.W73JGv/autopkgtest_tmp/nipype/interfaces/dipy/tests/test_base.py:130: UserWarning: Pass ['new_name', 'since', 'until'] as keyword args. From version 2.0.0 passing these as positional arguments will result in an error. 472s @deprecated_params('x', None, '0.3', '0.5', alternative='test2.y') 472s 472s interfaces/dipy/tests/test_base.py::test_get_default_args 472s /tmp/autopkgtest.W73JGv/autopkgtest_tmp/nipype/interfaces/dipy/tests/test_base.py:134: UserWarning: Pass ['new_name', 'since'] as keyword args. From version 2.0.0 passing these as positional arguments will result in an error. 472s @deprecated_params(['dummy', 'x'], None, '0.3', alternative='test2.y') 472s 472s interfaces/dipy/tests/test_base.py::test_get_default_args 472s /tmp/autopkgtest.W73JGv/autopkgtest_tmp/nipype/interfaces/dipy/tests/test_base.py:138: UserWarning: Pass ['new_name', 'since', 'until'] as keyword args. From version 2.0.0 passing these as positional arguments will result in an error. 472s @deprecated_params(['dummy', 'x'], None, '0.3', '0.5', alternative='test2.y') 472s 472s interfaces/fsl/dti.py::nipype.interfaces.fsl.dti.ProbTrackX 472s interfaces/fsl/dti.py::nipype.interfaces.fsl.dti.ProbTrackX2 472s /tmp/autopkgtest.W73JGv/autopkgtest_tmp/nipype/interfaces/fsl/dti.py:812: DeprecationWarning: Deprecated: Please use create_bedpostx_pipeline instead 472s warnings.warn( 472s 472s interfaces/fsl/epi.py::nipype.interfaces.fsl.epi.EPIDeWarp 472s /tmp/autopkgtest.W73JGv/autopkgtest_tmp/nipype/interfaces/fsl/epi.py:1400: DeprecationWarning: Deprecated: Please use niflow.nipype1.workflows.dmri.preprocess.epi.sdc_fmb instead 472s warnings.warn( 472s 472s interfaces/fsl/epi.py::nipype.interfaces.fsl.epi.EddyCorrect 472s /tmp/autopkgtest.W73JGv/autopkgtest_tmp/nipype/interfaces/fsl/epi.py:1506: DeprecationWarning: Deprecated: Please use nipype.interfaces.fsl.epi.Eddy instead 472s warnings.warn( 472s 472s interfaces/nipy/utils.py::nipype.interfaces.nipy.utils.Similarity 472s /tmp/autopkgtest.W73JGv/autopkgtest_tmp/nipype/interfaces/nipy/utils.py:57: DeprecationWarning: This interface is deprecated since 0.10.0. Please use nipype.algorithms.metrics.Similarity 472s warnings.warn( 472s 472s pipeline/engine/tests/test_engine.py: 24 warnings 472s compilation 13:5: DeprecationWarning: nx.nx_pydot.write_dot depends on the pydot package, which has known issues and is not actively maintained. Consider using nx.nx_agraph.write_dot instead. 472s 472s See https://github.com/networkx/networkx/issues/5723 472s 472s pipeline/engine/tests/test_engine.py: 24 warnings 472s /usr/lib/python3/dist-packages/networkx/drawing/nx_pydot.py:51: DeprecationWarning: nx.nx_pydot.to_pydot depends on the pydot package, which has known issues and is not actively maintained. 472s 472s See https://github.com/networkx/networkx/issues/5723 472s P = to_pydot(G) 472s 472s utils/tests/test_misc.py::test_rgetcwd 472s /tmp/autopkgtest.W73JGv/autopkgtest_tmp/nipype/utils/misc.py:363: UserWarning: Current folder does not exist, replacing with "/tmp/pytest-of-ubuntu/pytest-1/test_rgetcwd0" instead. 472s warn('Current folder does not exist, replacing with "%s" instead.' % cwd) 472s 472s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 472s =========================== short test summary info ============================ 472s FAILED nipype/pipeline/engine/tests/test_utils.py::test_provenance - Attribut... 472s = 1 failed, 2738 passed, 269 skipped, 1 deselected, 5 xfailed, 69 warnings in 164.18s (0:02:44) = 474s autopkgtest [19:19:24]: test run-unit-test: -----------------------] 475s run-unit-test FAIL non-zero exit status 1 475s autopkgtest [19:19:25]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 475s autopkgtest [19:19:25]: @@@@@@@@@@@@@@@@@@@@ summary 475s run-unit-test FAIL non-zero exit status 1