0s autopkgtest [03:11:09]: starting date and time: 2025-11-14 03:11:09+0000 0s autopkgtest [03:11:09]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [03:11:09]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.omcgyq9f/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:numpy --apt-upgrade multiqc --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=numpy/1:2.3.4+ds-3ubuntu1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-arm64-5.secgroup --name adt-resolute-arm64-multiqc-20251114-031109-juju-7f2275-prod-proposed-migration-environment-20-830b086e-05c8-4565-bffa-f231b7bafe14 --image adt/ubuntu-resolute-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 3s Creating nova instance adt-resolute-arm64-multiqc-20251114-031109-juju-7f2275-prod-proposed-migration-environment-20-830b086e-05c8-4565-bffa-f231b7bafe14 from image adt/ubuntu-resolute-arm64-server-20251113.img (UUID bb6b080b-fe01-47ac-8db9-c672882a347d)... 75s autopkgtest [03:12:24]: testbed dpkg architecture: arm64 75s autopkgtest [03:12:24]: testbed apt version: 3.1.11 75s autopkgtest [03:12:24]: @@@@@@@@@@@@@@@@@@@@ test bed setup 75s autopkgtest [03:12:24]: testbed release detected to be: None 76s autopkgtest [03:12:25]: updating testbed package index (apt update) 77s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [87.8 kB] 77s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 77s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 77s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 77s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [9848 B] 77s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [22.4 kB] 77s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [787 kB] 78s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [83.2 kB] 78s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 Packages [149 kB] 78s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 c-n-f Metadata [3104 B] 78s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 Packages [107 kB] 78s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 c-n-f Metadata [324 B] 78s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 Packages [454 kB] 78s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 c-n-f Metadata [13.0 kB] 78s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 Packages [12.0 kB] 78s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 c-n-f Metadata [516 B] 79s Fetched 1730 kB in 1s (1458 kB/s) 80s Reading package lists... 82s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 82s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 82s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 82s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 83s Reading package lists... 83s Reading package lists... 84s Building dependency tree... 84s Reading state information... 84s Calculating upgrade... 85s The following packages will be upgraded: 85s 3cpio cron cron-daemon-common libcap2 libcap2-bin libpam-cap liburcu8t64 85s libxml2-16 lto-disabled-list 85s 9 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 85s Need to get 1163 kB of archives. 85s After this operation, 64.5 kB of additional disk space will be used. 85s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 cron arm64 3.0pl1-200ubuntu1 [87.4 kB] 86s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 libcap2 arm64 1:2.75-10ubuntu1 [31.2 kB] 86s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 libpam-cap arm64 1:2.75-10ubuntu1 [12.7 kB] 86s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 libcap2-bin arm64 1:2.75-10ubuntu1 [32.8 kB] 86s Get:5 http://ftpmaster.internal/ubuntu resolute/main arm64 libxml2-16 arm64 2.15.1+dfsg-0.3 [639 kB] 86s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 cron-daemon-common all 3.0pl1-200ubuntu1 [15.7 kB] 86s Get:7 http://ftpmaster.internal/ubuntu resolute/main arm64 liburcu8t64 arm64 0.15.5-1 [64.5 kB] 86s Get:8 http://ftpmaster.internal/ubuntu resolute/main arm64 3cpio arm64 0.12.0-1ubuntu1 [268 kB] 86s Get:9 http://ftpmaster.internal/ubuntu resolute/main arm64 lto-disabled-list all 72 [12.4 kB] 87s dpkg-preconfigure: unable to re-open stdin: No such file or directory 87s Fetched 1163 kB in 1s (1167 kB/s) 88s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 88137 files and directories currently installed.) 88s Preparing to unpack .../cron_3.0pl1-200ubuntu1_arm64.deb ... 88s Unpacking cron (3.0pl1-200ubuntu1) over (3.0pl1-196ubuntu2) ... 88s Preparing to unpack .../libcap2_1%3a2.75-10ubuntu1_arm64.deb ... 88s Unpacking libcap2:arm64 (1:2.75-10ubuntu1) over (1:2.75-7ubuntu2) ... 88s Setting up libcap2:arm64 (1:2.75-10ubuntu1) ... 88s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 88137 files and directories currently installed.) 88s Preparing to unpack .../0-libpam-cap_1%3a2.75-10ubuntu1_arm64.deb ... 88s Unpacking libpam-cap:arm64 (1:2.75-10ubuntu1) over (1:2.75-7ubuntu2) ... 88s Preparing to unpack .../1-libcap2-bin_1%3a2.75-10ubuntu1_arm64.deb ... 88s Unpacking libcap2-bin (1:2.75-10ubuntu1) over (1:2.75-7ubuntu2) ... 89s Preparing to unpack .../2-libxml2-16_2.15.1+dfsg-0.3_arm64.deb ... 89s Unpacking libxml2-16:arm64 (2.15.1+dfsg-0.3) over (2.14.5+dfsg-0.2build1) ... 89s Preparing to unpack .../3-cron-daemon-common_3.0pl1-200ubuntu1_all.deb ... 89s Unpacking cron-daemon-common (3.0pl1-200ubuntu1) over (3.0pl1-196ubuntu2) ... 89s Preparing to unpack .../4-liburcu8t64_0.15.5-1_arm64.deb ... 89s Unpacking liburcu8t64:arm64 (0.15.5-1) over (0.15.4-1) ... 89s Preparing to unpack .../5-3cpio_0.12.0-1ubuntu1_arm64.deb ... 89s Unpacking 3cpio (0.12.0-1ubuntu1) over (0.11.0-2ubuntu2) ... 89s Preparing to unpack .../6-lto-disabled-list_72_all.deb ... 89s Unpacking lto-disabled-list (72) over (71) ... 89s Setting up liburcu8t64:arm64 (0.15.5-1) ... 89s Setting up 3cpio (0.12.0-1ubuntu1) ... 89s Setting up lto-disabled-list (72) ... 89s Setting up libxml2-16:arm64 (2.15.1+dfsg-0.3) ... 89s Setting up libcap2-bin (1:2.75-10ubuntu1) ... 89s Setting up libpam-cap:arm64 (1:2.75-10ubuntu1) ... 90s Setting up cron-daemon-common (3.0pl1-200ubuntu1) ... 90s Setting up cron (3.0pl1-200ubuntu1) ... 91s Processing triggers for libc-bin (2.42-2ubuntu2) ... 91s Processing triggers for man-db (2.13.1-1) ... 93s autopkgtest [03:12:42]: upgrading testbed (apt dist-upgrade and autopurge) 93s Reading package lists... 94s Building dependency tree... 94s Reading state information... 94s Calculating upgrade... 95s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 95s Reading package lists... 95s Building dependency tree... 95s Reading state information... 96s Solving dependencies... 96s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 97s autopkgtest [03:12:45]: rebooting testbed after setup commands that affected boot 130s autopkgtest [03:13:19]: testbed running kernel: Linux 6.17.0-5-generic #5-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 22 09:50:31 UTC 2025 133s autopkgtest [03:13:22]: @@@@@@@@@@@@@@@@@@@@ apt-source multiqc 140s Get:1 http://ftpmaster.internal/ubuntu resolute/universe multiqc 1.21+dfsg-2 (dsc) [2772 B] 140s Get:2 http://ftpmaster.internal/ubuntu resolute/universe multiqc 1.21+dfsg-2 (tar) [17.0 MB] 140s Get:3 http://ftpmaster.internal/ubuntu resolute/universe multiqc 1.21+dfsg-2 (tar) [1937 kB] 140s Get:4 http://ftpmaster.internal/ubuntu resolute/universe multiqc 1.21+dfsg-2 (diff) [11.9 kB] 140s gpgv: Signature made Sat Aug 31 11:27:49 2024 UTC 140s gpgv: using RSA key 8F6DE104377F3B11E741748731F3144544A1741A 140s gpgv: issuer "tchet@debian.org" 140s gpgv: Can't check signature: No public key 140s dpkg-source: warning: cannot verify inline signature for ./multiqc_1.21+dfsg-2.dsc: no acceptable signature found 141s autopkgtest [03:13:30]: testing package multiqc version 1.21+dfsg-2 142s autopkgtest [03:13:31]: build not needed 143s autopkgtest [03:13:32]: test run-unit-test: preparing testbed 144s Reading package lists... 144s Building dependency tree... 144s Reading state information... 144s Solving dependencies... 145s The following NEW packages will be installed: 145s blt fontconfig-config fonts-dejavu-core fonts-dejavu-mono 145s fonts-glyphicons-halflings fonts-lyx libblas3 libdeflate0 libfontconfig1 145s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libimagequant0 libjbig0 145s libjpeg-turbo8 libjpeg8 libjs-bootstrap libjs-jquery libjs-jquery-metadata 145s libjs-jquery-tablesorter libjs-jquery-ui liblapack3 liblcms2-2 liblerc4 145s libopenjp2-7 libqhull-r8.0 libraqm0 libsharpyuv0 libtcl8.6 libtiff6 libtk8.6 145s libwebp7 libwebpdemux2 libwebpmux3 libxft2 libxrender1 libxslt1.1 libxss1 145s libzopfli1 multiqc python-matplotlib-data python3-brotli python3-click 145s python3-coloredlogs python3-colormath python3-contourpy python3-cycler 145s python3-decorator python3-fastjsonschema python3-fonttools python3-fs 145s python3-humanfriendly python3-humanize python3-importlib-metadata 145s python3-jupyter-core python3-kiwisolver python3-lxml python3-lz4 145s python3-lzstring python3-markdown python3-matplotlib python3-mpmath 145s python3-nbformat python3-networkx python3-numpy python3-numpy-dev 145s python3-pil python3-pil.imagetk python3-platformdirs python3-plotly 145s python3-pyaml-env python3-pytz python3-rich-click python3-scipy 145s python3-spectra python3-sympy python3-tenacity python3-tk python3-traitlets 145s python3-tz python3-ufolib2 python3-unicodedata2 python3-zopfli python3.13-tk 145s python3.14-tk tk8.6-blt2.5 unicode-data x11-common 145s 0 upgraded, 89 newly installed, 0 to remove and 0 not upgraded. 145s Need to get 89.8 MB of archives. 145s After this operation, 472 MB of additional disk space will be used. 145s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 python3-numpy-dev arm64 1:2.3.4+ds-3ubuntu1 [145 kB] 145s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 libblas3 arm64 3.12.1-7 [181 kB] 146s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 libgfortran5 arm64 15.2.0-7ubuntu1 [450 kB] 146s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 liblapack3 arm64 3.12.1-7 [2300 kB] 147s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 python3-numpy arm64 1:2.3.4+ds-3ubuntu1 [4575 kB] 148s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 libtcl8.6 arm64 8.6.17+dfsg-1 [1024 kB] 148s Get:7 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 148s Get:8 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 148s Get:9 http://ftpmaster.internal/ubuntu resolute/main arm64 fontconfig-config arm64 2.15.0-2.3ubuntu1 [38.1 kB] 148s Get:10 http://ftpmaster.internal/ubuntu resolute/main arm64 libfontconfig1 arm64 2.15.0-2.3ubuntu1 [144 kB] 148s Get:11 http://ftpmaster.internal/ubuntu resolute/main arm64 libxrender1 arm64 1:0.9.12-1 [19.5 kB] 148s Get:12 http://ftpmaster.internal/ubuntu resolute/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB] 148s Get:13 http://ftpmaster.internal/ubuntu resolute/main arm64 x11-common all 1:7.7+24ubuntu1 [22.4 kB] 148s Get:14 http://ftpmaster.internal/ubuntu resolute/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B] 148s Get:15 http://ftpmaster.internal/ubuntu resolute/main arm64 libtk8.6 arm64 8.6.17-1 [811 kB] 148s Get:16 http://ftpmaster.internal/ubuntu resolute/main arm64 tk8.6-blt2.5 arm64 2.5.3+dfsg-8 [624 kB] 148s Get:17 http://ftpmaster.internal/ubuntu resolute/main arm64 blt arm64 2.5.3+dfsg-8 [4824 B] 148s Get:18 http://ftpmaster.internal/ubuntu resolute/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-6 [119 kB] 148s Get:19 http://ftpmaster.internal/ubuntu resolute/universe arm64 fonts-lyx all 2.4.4-2 [171 kB] 148s Get:20 http://ftpmaster.internal/ubuntu resolute/main arm64 libdeflate0 arm64 1.23-2 [46.4 kB] 148s Get:21 http://ftpmaster.internal/ubuntu resolute/main arm64 libgomp1 arm64 15.2.0-7ubuntu1 [147 kB] 148s Get:22 http://ftpmaster.internal/ubuntu resolute/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB] 148s Get:23 http://ftpmaster.internal/ubuntu resolute/main arm64 libharfbuzz0b arm64 12.1.0-1 [523 kB] 148s Get:24 http://ftpmaster.internal/ubuntu resolute/main arm64 libimagequant0 arm64 2.18.0-1build1 [37.1 kB] 148s Get:25 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg-turbo8 arm64 2.1.5-4ubuntu2 [165 kB] 148s Get:26 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 148s Get:27 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-bootstrap all 3.4.1+dfsg-6 [129 kB] 148s Get:28 http://ftpmaster.internal/ubuntu resolute/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 148s Get:29 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-jquery-metadata all 12-4 [6582 B] 148s Get:30 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-jquery-tablesorter all 1:2.31.3+dfsg1-4 [192 kB] 148s Get:31 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 148s Get:32 http://ftpmaster.internal/ubuntu resolute/main arm64 liblcms2-2 arm64 2.16-2 [170 kB] 148s Get:33 http://ftpmaster.internal/ubuntu resolute/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB] 148s Get:34 http://ftpmaster.internal/ubuntu resolute/universe arm64 libqhull-r8.0 arm64 2020.2-7 [190 kB] 148s Get:35 http://ftpmaster.internal/ubuntu resolute/main arm64 libraqm0 arm64 0.10.3-1 [15.0 kB] 148s Get:36 http://ftpmaster.internal/ubuntu resolute/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB] 148s Get:37 http://ftpmaster.internal/ubuntu resolute/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB] 148s Get:38 http://ftpmaster.internal/ubuntu resolute/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB] 148s Get:39 http://ftpmaster.internal/ubuntu resolute/main arm64 libtiff6 arm64 4.7.0-3ubuntu3 [196 kB] 148s Get:40 http://ftpmaster.internal/ubuntu resolute/main arm64 libwebpdemux2 arm64 1.5.0-0.1 [12.5 kB] 148s Get:41 http://ftpmaster.internal/ubuntu resolute/main arm64 libwebpmux3 arm64 1.5.0-0.1 [25.4 kB] 148s Get:42 http://ftpmaster.internal/ubuntu resolute/main arm64 libxslt1.1 arm64 1.1.43-0.3 [172 kB] 149s Get:43 http://ftpmaster.internal/ubuntu resolute/universe arm64 libzopfli1 arm64 1.0.3-3 [108 kB] 149s Get:44 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-click all 8.2.0+0.really.8.1.8-1 [80.0 kB] 149s Get:45 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-humanfriendly all 10.0-6 [70.8 kB] 149s Get:46 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-coloredlogs all 15.0.1-1 [38.2 kB] 149s Get:47 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-humanize all 4.12.1-1 [58.3 kB] 149s Get:48 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-importlib-metadata all 8.7.0-2 [21.0 kB] 149s Get:49 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-markdown all 3.8.2-2 [75.2 kB] 149s Get:50 http://ftpmaster.internal/ubuntu resolute/universe arm64 python-matplotlib-data all 3.10.7+dfsg1-1 [2930 kB] 149s Get:51 http://ftpmaster.internal/ubuntu resolute/main arm64 libopenjp2-7 arm64 2.5.3-2.1 [179 kB] 149s Get:52 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-pil arm64 11.3.0-1ubuntu2 [492 kB] 149s Get:53 http://ftpmaster.internal/ubuntu resolute/main arm64 python3.14-tk arm64 3.14.0-4 [107 kB] 149s Get:54 http://ftpmaster.internal/ubuntu resolute/main arm64 python3.13-tk arm64 3.13.9-1 [106 kB] 149s Get:55 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-tk arm64 3.13.9-1 [8946 B] 149s Get:56 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pil.imagetk arm64 11.3.0-1ubuntu2 [9582 B] 149s Get:57 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-contourpy arm64 1.3.1-2 [240 kB] 149s Get:58 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-cycler all 0.12.1-2 [9850 B] 149s Get:59 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-brotli arm64 1.1.0-2build6 [343 kB] 149s Get:60 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-platformdirs all 4.3.7-1 [16.9 kB] 149s Get:61 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-fs all 2.4.16-8ubuntu1 [91.1 kB] 149s Get:62 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-lxml arm64 6.0.2-1 [2155 kB] 149s Get:63 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-lz4 arm64 4.4.4+dfsg-3 [27.6 kB] 149s Get:64 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-decorator all 5.2.1-2 [28.1 kB] 149s Get:65 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-scipy arm64 1.15.3-1ubuntu1 [18.7 MB] 152s Get:66 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-mpmath all 1.3.0-2 [423 kB] 152s Get:67 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-sympy all 1.14.0-2 [4306 kB] 152s Get:68 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-ufolib2 all 0.17.1+dfsg1-1 [33.5 kB] 152s Get:69 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-unicodedata2 arm64 16.0.0+ds-1build1 [398 kB] 152s Get:70 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-zopfli arm64 0.4.0-1 [10.8 kB] 152s Get:71 http://ftpmaster.internal/ubuntu resolute/universe arm64 unicode-data all 16.0.0-1 [9513 kB] 153s Get:72 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-fonttools arm64 4.57.0-2build1 [1648 kB] 154s Get:73 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-kiwisolver arm64 1.4.10~rc0-1 [60.1 kB] 154s Get:74 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-matplotlib arm64 3.10.7+dfsg1-1 [17.1 MB] 156s Get:75 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-pytz all 2025.2-4 [32.3 kB] 156s Get:76 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-tz all 2025.2-4 [1746 B] 156s Get:77 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-fastjsonschema all 2.21.1-1 [20.4 kB] 156s Get:78 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-traitlets all 5.14.3+really5.14.3-1 [71.5 kB] 156s Get:79 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-jupyter-core all 5.7.2-5 [28.1 kB] 156s Get:80 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-nbformat all 5.9.1-1 [41.2 kB] 156s Get:81 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-tenacity all 9.0.0-0ubuntu1 [17.0 kB] 156s Get:82 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-plotly all 5.20.0+dfsg-1 [2766 kB] 156s Get:83 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pyaml-env all 1.2.1-2 [9090 B] 156s Get:84 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-rich-click all 1.6.0-2 [18.0 kB] 156s Get:85 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-networkx all 3.2.1-4ubuntu1 [11.5 MB] 157s Get:86 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-colormath all 3.0.0-4 [36.6 kB] 157s Get:87 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-spectra all 0.1.0-1 [17.2 kB] 157s Get:88 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-lzstring all 1.0.4-3 [6262 B] 157s Get:89 http://ftpmaster.internal/ubuntu resolute/universe arm64 multiqc all 1.21+dfsg-2 [733 kB] 158s Fetched 89.8 MB in 12s (7365 kB/s) 158s Selecting previously unselected package python3-numpy-dev:arm64. 158s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 88136 files and directories currently installed.) 158s Preparing to unpack .../00-python3-numpy-dev_1%3a2.3.4+ds-3ubuntu1_arm64.deb ... 158s Unpacking python3-numpy-dev:arm64 (1:2.3.4+ds-3ubuntu1) ... 158s Selecting previously unselected package libblas3:arm64. 158s Preparing to unpack .../01-libblas3_3.12.1-7_arm64.deb ... 158s Unpacking libblas3:arm64 (3.12.1-7) ... 158s Selecting previously unselected package libgfortran5:arm64. 158s Preparing to unpack .../02-libgfortran5_15.2.0-7ubuntu1_arm64.deb ... 158s Unpacking libgfortran5:arm64 (15.2.0-7ubuntu1) ... 159s Selecting previously unselected package liblapack3:arm64. 159s Preparing to unpack .../03-liblapack3_3.12.1-7_arm64.deb ... 159s Unpacking liblapack3:arm64 (3.12.1-7) ... 159s Selecting previously unselected package python3-numpy. 159s Preparing to unpack .../04-python3-numpy_1%3a2.3.4+ds-3ubuntu1_arm64.deb ... 159s Unpacking python3-numpy (1:2.3.4+ds-3ubuntu1) ... 159s Selecting previously unselected package libtcl8.6:arm64. 159s Preparing to unpack .../05-libtcl8.6_8.6.17+dfsg-1_arm64.deb ... 159s Unpacking libtcl8.6:arm64 (8.6.17+dfsg-1) ... 159s Selecting previously unselected package fonts-dejavu-mono. 159s Preparing to unpack .../06-fonts-dejavu-mono_2.37-8_all.deb ... 159s Unpacking fonts-dejavu-mono (2.37-8) ... 159s Selecting previously unselected package fonts-dejavu-core. 159s Preparing to unpack .../07-fonts-dejavu-core_2.37-8_all.deb ... 159s Unpacking fonts-dejavu-core (2.37-8) ... 159s Selecting previously unselected package fontconfig-config. 159s Preparing to unpack .../08-fontconfig-config_2.15.0-2.3ubuntu1_arm64.deb ... 160s Unpacking fontconfig-config (2.15.0-2.3ubuntu1) ... 160s Selecting previously unselected package libfontconfig1:arm64. 160s Preparing to unpack .../09-libfontconfig1_2.15.0-2.3ubuntu1_arm64.deb ... 160s Unpacking libfontconfig1:arm64 (2.15.0-2.3ubuntu1) ... 160s Selecting previously unselected package libxrender1:arm64. 160s Preparing to unpack .../10-libxrender1_1%3a0.9.12-1_arm64.deb ... 160s Unpacking libxrender1:arm64 (1:0.9.12-1) ... 160s Selecting previously unselected package libxft2:arm64. 160s Preparing to unpack .../11-libxft2_2.3.6-1build1_arm64.deb ... 160s Unpacking libxft2:arm64 (2.3.6-1build1) ... 160s Selecting previously unselected package x11-common. 160s Preparing to unpack .../12-x11-common_1%3a7.7+24ubuntu1_all.deb ... 160s Unpacking x11-common (1:7.7+24ubuntu1) ... 160s Selecting previously unselected package libxss1:arm64. 160s Preparing to unpack .../13-libxss1_1%3a1.2.3-1build3_arm64.deb ... 160s Unpacking libxss1:arm64 (1:1.2.3-1build3) ... 160s Selecting previously unselected package libtk8.6:arm64. 160s Preparing to unpack .../14-libtk8.6_8.6.17-1_arm64.deb ... 160s Unpacking libtk8.6:arm64 (8.6.17-1) ... 160s Selecting previously unselected package tk8.6-blt2.5. 160s Preparing to unpack .../15-tk8.6-blt2.5_2.5.3+dfsg-8_arm64.deb ... 160s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-8) ... 160s Selecting previously unselected package blt. 161s Preparing to unpack .../16-blt_2.5.3+dfsg-8_arm64.deb ... 161s Unpacking blt (2.5.3+dfsg-8) ... 161s Selecting previously unselected package fonts-glyphicons-halflings. 161s Preparing to unpack .../17-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-6_all.deb ... 161s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-6) ... 161s Selecting previously unselected package fonts-lyx. 161s Preparing to unpack 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python3-sympy (1.14.0-2) ... 166s Selecting previously unselected package python3-ufolib2. 166s Preparing to unpack .../67-python3-ufolib2_0.17.1+dfsg1-1_all.deb ... 166s Unpacking python3-ufolib2 (0.17.1+dfsg1-1) ... 166s Selecting previously unselected package python3-unicodedata2. 166s Preparing to unpack .../68-python3-unicodedata2_16.0.0+ds-1build1_arm64.deb ... 166s Unpacking python3-unicodedata2 (16.0.0+ds-1build1) ... 166s Selecting previously unselected package python3-zopfli. 166s Preparing to unpack .../69-python3-zopfli_0.4.0-1_arm64.deb ... 166s Unpacking python3-zopfli (0.4.0-1) ... 166s Selecting previously unselected package unicode-data. 166s Preparing to unpack .../70-unicode-data_16.0.0-1_all.deb ... 166s Unpacking unicode-data (16.0.0-1) ... 166s Selecting previously unselected package python3-fonttools. 166s Preparing to unpack .../71-python3-fonttools_4.57.0-2build1_arm64.deb ... 166s Unpacking python3-fonttools (4.57.0-2build1) ... 166s Selecting previously 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169s Unpacking python3-pyaml-env (1.2.1-2) ... 169s Selecting previously unselected package python3-rich-click. 169s Preparing to unpack .../83-python3-rich-click_1.6.0-2_all.deb ... 169s Unpacking python3-rich-click (1.6.0-2) ... 169s Selecting previously unselected package python3-networkx. 169s Preparing to unpack .../84-python3-networkx_3.2.1-4ubuntu1_all.deb ... 169s Unpacking python3-networkx (3.2.1-4ubuntu1) ... 170s Selecting previously unselected package python3-colormath. 170s Preparing to unpack .../85-python3-colormath_3.0.0-4_all.deb ... 170s Unpacking python3-colormath (3.0.0-4) ... 170s Selecting previously unselected package python3-spectra. 170s Preparing to unpack .../86-python3-spectra_0.1.0-1_all.deb ... 170s Unpacking python3-spectra (0.1.0-1) ... 170s Selecting previously unselected package python3-lzstring. 170s Preparing to unpack .../87-python3-lzstring_1.0.4-3_all.deb ... 170s Unpacking python3-lzstring (1.0.4-3) ... 170s Selecting previously unselected package multiqc. 170s Preparing to unpack .../88-multiqc_1.21+dfsg-2_all.deb ... 170s Unpacking multiqc (1.21+dfsg-2) ... 170s Setting up libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 170s Setting up liblcms2-2:arm64 (2.16-2) ... 170s Setting up libsharpyuv0:arm64 (1.5.0-0.1) ... 170s Setting up liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 170s Setting up python3-importlib-metadata (8.7.0-2) ... 170s Setting up libxrender1:arm64 (1:0.9.12-1) ... 170s Setting up python3-lz4 (4.4.4+dfsg-3) ... 171s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-6) ... 171s Setting up python3-unicodedata2 (16.0.0+ds-1build1) ... 171s Setting up fonts-lyx (2.4.4-2) ... 171s Setting up python3-tenacity (9.0.0-0ubuntu1) ... 171s Setting up x11-common (1:7.7+24ubuntu1) ... 172s Setting up libdeflate0:arm64 (1.23-2) ... 172s Setting up libqhull-r8.0:arm64 (2020.2-7) ... 172s Setting up python3-pytz (2025.2-4) ... 172s Setting up libgomp1:arm64 (15.2.0-7ubuntu1) ... 172s Setting up python3-click (8.2.0+0.really.8.1.8-1) ... 172s Setting up python3-networkx (3.2.1-4ubuntu1) ... 174s Setting up libjbig0:arm64 (2.1-6.1ubuntu2) ... 174s Setting up python3-platformdirs (4.3.7-1) ... 174s Setting up python3-tz (2025.2-4) ... 174s Setting up python3-fs (2.4.16-8ubuntu1) ... 175s Setting up unicode-data (16.0.0-1) ... 175s Setting up python3-decorator (5.2.1-2) ... 175s Setting up libblas3:arm64 (3.12.1-7) ... 175s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 175s Setting up python3-pyaml-env (1.2.1-2) ... 175s /usr/lib/python3/dist-packages/pyaml_env/parse_config.py:58: SyntaxWarning: invalid escape sequence '\w' 175s type_tag_pattern = re.compile(f'({type_tag}\w+\s)') 175s Setting up libzopfli1 (1.0.3-3) ... 175s Setting up python3-humanfriendly (10.0-6) ... 176s Setting up python3-brotli (1.1.0-2build6) ... 176s Setting up python3-cycler (0.12.1-2) ... 176s Setting up libimagequant0:arm64 (2.18.0-1build1) ... 176s Setting up fonts-dejavu-mono (2.37-8) ... 176s Setting up python3-kiwisolver (1.4.10~rc0-1) ... 176s Setting up python3-numpy-dev:arm64 (1:2.3.4+ds-3ubuntu1) ... 176s Setting up python3-markdown (3.8.2-2) ... 177s Setting up libtcl8.6:arm64 (8.6.17+dfsg-1) ... 177s Setting up fonts-dejavu-core (2.37-8) ... 177s Setting up libjpeg-turbo8:arm64 (2.1.5-4ubuntu2) ... 177s Setting up libgfortran5:arm64 (15.2.0-7ubuntu1) ... 177s Setting up libwebp7:arm64 (1.5.0-0.1) ... 177s Setting up python3-rich-click (1.6.0-2) ... 177s Setting up python3-fastjsonschema (2.21.1-1) ... 177s Setting up python3-traitlets (5.14.3+really5.14.3-1) ... 177s Setting up libxslt1.1:arm64 (1.1.43-0.3) ... 177s Setting up libopenjp2-7:arm64 (2.5.3-2.1) ... 177s Setting up libharfbuzz0b:arm64 (12.1.0-1) ... 177s Setting up libxss1:arm64 (1:1.2.3-1build3) ... 177s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 177s Setting up python3-mpmath (1.3.0-2) ... 178s Setting up python3-lzstring (1.0.4-3) ... 179s Setting up python3-humanize (4.12.1-1) ... 179s Setting up python-matplotlib-data (3.10.7+dfsg1-1) ... 179s Setting up libwebpmux3:arm64 (1.5.0-0.1) ... 179s Setting up python3-coloredlogs (15.0.1-1) ... 179s Setting up python3-jupyter-core (5.7.2-5) ... 179s Setting up libjs-bootstrap (3.4.1+dfsg-6) ... 179s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 179s Setting up python3-sympy (1.14.0-2) ... 190s Setting up liblapack3:arm64 (3.12.1-7) ... 190s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 190s Setting up fontconfig-config (2.15.0-2.3ubuntu1) ... 190s Setting up libwebpdemux2:arm64 (1.5.0-0.1) ... 190s Setting up python3-nbformat (5.9.1-1) ... 191s Setting up python3-zopfli (0.4.0-1) ... 191s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 191s Setting up libjs-jquery-metadata (12-4) ... 191s Setting up libraqm0:arm64 (0.10.3-1) ... 191s Setting up python3-plotly (5.20.0+dfsg-1) ... 202s Setting up python3-numpy (1:2.3.4+ds-3ubuntu1) ... 205s Setting up python3-colormath (3.0.0-4) ... 205s /usr/lib/python3/dist-packages/colormath/chromatic_adaptation.py:85: SyntaxWarning: invalid escape sequence '\*' 205s logger.debug(" \* Applying adaptation matrix: %s", adaptation) 205s /usr/lib/python3/dist-packages/colormath/color_appearance_models.py:692: SyntaxWarning: invalid escape sequence '\s' 205s :param sigma: Relative luminance parameter :math:`\sigma`. For average surround set :math:`\sigma=1/2.3`, 205s /usr/lib/python3/dist-packages/colormath/color_appearance_models.py:798: SyntaxWarning: invalid escape sequence '\s' 205s :param sigma: :math:`\sigma` 205s /usr/lib/python3/dist-packages/colormath/color_conversions.py:40: SyntaxWarning: invalid escape sequence '\*' 205s logger.debug(" \* Applying RGB conversion matrix: %s->%s", 205s /usr/lib/python3/dist-packages/colormath/color_conversions.py:488: SyntaxWarning: invalid escape sequence '\-' 205s logger.debug(" \- Target RGB space: %s", target_rgb) 205s /usr/lib/python3/dist-packages/colormath/color_conversions.py:490: SyntaxWarning: invalid escape sequence '\-' 205s logger.debug(" \- Target native illuminant: %s", target_illum) 205s /usr/lib/python3/dist-packages/colormath/color_conversions.py:491: SyntaxWarning: invalid escape sequence '\-' 205s logger.debug(" \- XYZ color's illuminant: %s", cobj.illuminant) 205s /usr/lib/python3/dist-packages/colormath/color_conversions.py:497: SyntaxWarning: invalid escape sequence '\*' 205s logger.debug(" \* Applying transformation from %s to %s ", 205s /usr/lib/python3/dist-packages/colormath/color_conversions.py:503: SyntaxWarning: invalid escape sequence '\*' 205s logger.debug(" \* New values: %.3f, %.3f, %.3f", 205s /usr/lib/python3/dist-packages/colormath/color_objects.py:452: SyntaxWarning: invalid escape sequence '\-' 205s logger.debug(" \- Original illuminant: %s", self.illuminant) 205s /usr/lib/python3/dist-packages/colormath/color_objects.py:453: SyntaxWarning: invalid escape sequence '\-' 205s logger.debug(" \- Target illuminant: %s", target_illuminant) 205s /usr/lib/python3/dist-packages/colormath/color_objects.py:459: SyntaxWarning: invalid escape sequence '\*' 205s logger.debug(" \* Applying transformation from %s to %s ", 205s Setting up libjs-jquery-tablesorter (1:2.31.3+dfsg1-4) ... 205s Setting up python3-lxml:arm64 (6.0.2-1) ... 206s Setting up libtiff6:arm64 (4.7.0-3ubuntu3) ... 206s Setting up python3-contourpy (1.3.1-2) ... 206s Setting up libfontconfig1:arm64 (2.15.0-2.3ubuntu1) ... 206s Setting up libxft2:arm64 (2.3.6-1build1) ... 206s Setting up python3-scipy (1.15.3-1ubuntu1) ... 212s Setting up python3-spectra (0.1.0-1) ... 212s Setting up libtk8.6:arm64 (8.6.17-1) ... 212s Setting up python3.13-tk (3.13.9-1) ... 212s Setting up python3-pil:arm64 (11.3.0-1ubuntu2) ... 213s Setting up tk8.6-blt2.5 (2.5.3+dfsg-8) ... 213s Setting up python3.14-tk (3.14.0-4) ... 213s Setting up blt (2.5.3+dfsg-8) ... 213s Setting up python3-tk:arm64 (3.13.9-1) ... 213s Setting up python3-pil.imagetk:arm64 (11.3.0-1ubuntu2) ... 213s Setting up python3-fonttools (4.57.0-2build1) ... 214s Setting up python3-ufolib2 (0.17.1+dfsg1-1) ... 215s Setting up python3-matplotlib (3.10.7+dfsg1-1) ... 217s Setting up multiqc (1.21+dfsg-2) ... 217s Processing triggers for libc-bin (2.42-2ubuntu2) ... 218s Processing triggers for man-db (2.13.1-1) ... 220s autopkgtest [03:14:49]: test run-unit-test: [----------------------- 221s 221s /// MultiQC 🔍 | v1.21 221s 221s Usage: multiqc [OPTIONS] [ANALYSIS DIRECTORY] 221s 221s MultiQC aggregates results from bioinformatics analyses across many samples 221s into a single report. 221s It searches a given directory for analysis logs and compiles a HTML report. 221s It's a general use tool, perfect for summarising the output from numerous 221s bioinformatics tools. 221s To run, supply with one or more directory to scan for analysis results. For 221s example, to run in the current working directory, use 'multiqc .' 221s 221s ╭─ Main options ───────────────────────────────────────────────────────────────╮ 221s │ --force -f Overwrite any existing reports │ 221s │ --config -c Specific config file to load, after those in MultiQC │ 221s │ dir / home dir / working dir. │ 221s │ (PATH) │ 221s │ --cl-config Specify MultiQC config YAML on the command line │ 221s │ (TEXT) │ 221s │ --filename -n Report filename. Use 'stdout' to print to standard │ 221s │ out. │ 221s │ (TEXT) │ 221s │ --outdir -o Create report in the specified output directory. │ 221s │ (TEXT) │ 221s │ --ignore -x Ignore analysis files (GLOB EXPRESSION) │ 221s │ --ignore-samples Ignore sample names (GLOB EXPRESSION) │ 221s │ --ignore-symlinks Ignore symlinked directories and files │ 221s │ --file-list -l Supply a file containing a list of file paths to be │ 221s │ searched, one per row │ 221s ╰──────────────────────────────────────────────────────────────────────────────╯ 221s ╭─ Choosing modules to run ────────────────────────────────────────────────────╮ 221s │ --module -m Use only this module. Can specify multiple times. │ 221s │ (MODULE NAME) │ 221s │ --exclude -e Do not use this module. Can specify multiple times. │ 221s │ (MODULE NAME) │ 221s ╰──────────────────────────────────────────────────────────────────────────────╯ 221s ╭─ Sample handling ────────────────────────────────────────────────────────────╮ 221s │ --dirs -d Prepend directory to sample names │ 221s │ --dirs-depth -dd Prepend n directories to sample names. Negative number │ 221s │ to take from start of path. │ 221s │ (INTEGER) │ 221s │ --fullnames -s Do not clean the sample names (leave as full file │ 221s │ name) │ 221s │ --fn_as_s_name Use the log filename as the sample name │ 221s │ --replace-names TSV file to rename sample names during report │ 221s │ generation │ 221s │ (PATH) │ 221s ╰──────────────────────────────────────────────────────────────────────────────╯ 221s ╭─ Report customisation ───────────────────────────────────────────────────────╮ 221s │ --title -i Report title. Printed as page header, used for │ 221s │ filename if not otherwise specified. │ 221s │ (TEXT) │ 221s │ --comment -b Custom comment, will be printed at the top of the │ 221s │ report. │ 221s │ (TEXT) │ 221s │ --template -t Report template to use. │ 221s │ (default|gathered|geo|highcharts|sections|simple) │ 221s │ --sample-names TSV file containing alternative sample names for │ 221s │ renaming buttons in the report │ 221s │ (PATH) │ 221s │ --sample-filters TSV file containing show/hide patterns for the report │ 221s │ (PATH) │ 221s │ --custom-css-file Custom CSS file to add to the final report (PATH) │ 221s ╰──────────────────────────────────────────────────────────────────────────────╯ 221s ╭─ Output files ───────────────────────────────────────────────────────────────╮ 221s │ --flat -fp Use only flat plots (static images) │ 221s │ --interactive -ip Use only interactive plots (in-browser Javascript) │ 221s │ --export -p Export plots as static images in addition to the report │ 221s │ --data-dir Force the parsed data directory to be created. │ 221s │ --no-data-dir Prevent the parsed data directory from being created. │ 221s │ --data-format -k Output parsed data in a different format. │ 221s │ (tsv|csv|json|yaml) │ 221s │ --zip-data-dir -z Compress the data directory. │ 221s │ --no-report Do not generate a report, only export data and plots │ 221s │ --pdf Creates PDF report with the 'simple' template. Requires │ 221s │ Pandoc to be installed. │ 221s ╰──────────────────────────────────────────────────────────────────────────────╯ 221s ╭─ MultiQC behaviour ──────────────────────────────────────────────────────────╮ 221s │ --verbose -v Increase output verbosity. (INTEGER RANGE) │ 221s │ --quiet -q Only show log warnings │ 221s │ --strict Don't catch exceptions, run additional code checks │ 221s │ to help development. │ 221s │ --development,--dev Development mode. Do not compress and minimise JS, │ 221s │ export uncompressed plot data │ 221s │ --require-logs Require all explicitly requested modules to have │ 221s │ log files. If not, MultiQC will exit with an error. │ 221s │ --profile-runtime Add analysis of how long MultiQC takes to run to │ 221s │ the report │ 221s │ --no-megaqc-upload Don't upload generated report to MegaQC, even if │ 221s │ MegaQC options are found │ 221s │ --no-ansi Disable coloured log output │ 221s │ --version Show the version and exit. │ 221s │ --help -h Show this message and exit. │ 221s ╰──────────────────────────────────────────────────────────────────────────────╯ 221s 221s See http://multiqc.info for more details. 221s 221s FIXME: The test data should be delivered in a separate binary package once freeze is over 222s 222s /// MultiQC 🔍 | v1.21 222s 222s | multiqc | MultiQC Version v1.32 now available! 222s | multiqc | Search path : /tmp/autopkgtest.SnnJfX/autopkgtest_tmp/data 223s | searching | ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 100% 121/121 223s | feature_counts | Found 8 reports 223s | star | Found 8 reports 223s | cutadapt | Found 16 reports 223s | fastqc | Found 32 reports 223s | multiqc | Report : multiqc_report.html 223s | multiqc | Data : multiqc_data 223s | multiqc | Could not include file 'assets/js/packages/jszip.min.js': [Errno 2] No such file or directory: '/tmp/tmpjgmfmdtd/assets/js/packages/jszip.min.js' 223s | multiqc | Could not include file 'assets/js/packages/plotly-2.27.0.min.js': [Errno 2] No such file or directory: '/tmp/tmpjgmfmdtd/assets/js/packages/plotly-2.27.0.min.js' 224s | multiqc | MultiQC complete 224s -e 224s PASS 224s 224s autopkgtest [03:14:53]: test run-unit-test: -----------------------] 225s run-unit-test PASS 225s autopkgtest [03:14:54]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 225s autopkgtest [03:14:54]: @@@@@@@@@@@@@@@@@@@@ summary 225s run-unit-test PASS