0s autopkgtest [03:42:57]: starting date and time: 2025-11-05 03:42:57+0000 0s autopkgtest [03:42:57]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [03:42:57]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.m4r0hxu6/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python-markdown,src:node-jquery --apt-upgrade multiqc --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python-markdown/3.10-1 node-jquery/3.7.1+dfsg+~3.5.33-1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-arm64-20.secgroup --name adt-resolute-arm64-multiqc-20251105-034257-juju-7f2275-prod-proposed-migration-environment-15-60791549-996b-4bac-9c5b-2f3f228c6d68 --image adt/ubuntu-resolute-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 3s Creating nova instance adt-resolute-arm64-multiqc-20251105-034257-juju-7f2275-prod-proposed-migration-environment-15-60791549-996b-4bac-9c5b-2f3f228c6d68 from image adt/ubuntu-resolute-arm64-server-20251105.img (UUID 21b39a18-e39b-4e64-b1c3-a7cd7ba5ae1f)... 79s autopkgtest [03:44:16]: testbed dpkg architecture: arm64 80s autopkgtest [03:44:17]: testbed apt version: 3.1.11 80s autopkgtest [03:44:17]: @@@@@@@@@@@@@@@@@@@@ test bed setup 80s autopkgtest [03:44:17]: testbed release detected to be: None 81s autopkgtest [03:44:18]: updating testbed package index (apt update) 82s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [87.8 kB] 82s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 82s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 82s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 82s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [23.7 kB] 82s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [9848 B] 82s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [900 kB] 83s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [71.4 kB] 83s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 Packages [114 kB] 83s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 c-n-f Metadata [3088 B] 83s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 Packages [107 kB] 83s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 c-n-f Metadata [324 B] 83s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 Packages [527 kB] 83s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 c-n-f Metadata [13.1 kB] 83s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 Packages [14.0 kB] 83s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 c-n-f Metadata [560 B] 85s Fetched 1872 kB in 2s (986 kB/s) 86s Reading package lists... 87s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 87s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 87s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 87s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 88s Reading package lists... 89s Reading package lists... 89s Building dependency tree... 89s Reading state information... 90s Calculating upgrade... 91s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 91s autopkgtest [03:44:28]: upgrading testbed (apt dist-upgrade and autopurge) 91s Reading package lists... 92s Building dependency tree... 92s Reading state information... 92s Calculating upgrade... 93s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 94s Reading package lists... 94s Building dependency tree... 94s Reading state information... 95s Solving dependencies... 96s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 99s autopkgtest [03:44:36]: testbed running kernel: Linux 6.17.0-5-generic #5-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 22 09:50:31 UTC 2025 99s autopkgtest [03:44:36]: @@@@@@@@@@@@@@@@@@@@ apt-source multiqc 104s Get:1 http://ftpmaster.internal/ubuntu resolute/universe multiqc 1.21+dfsg-2 (dsc) [2772 B] 104s Get:2 http://ftpmaster.internal/ubuntu resolute/universe multiqc 1.21+dfsg-2 (tar) [17.0 MB] 104s Get:3 http://ftpmaster.internal/ubuntu resolute/universe multiqc 1.21+dfsg-2 (tar) [1937 kB] 104s Get:4 http://ftpmaster.internal/ubuntu resolute/universe multiqc 1.21+dfsg-2 (diff) [11.9 kB] 104s gpgv: Signature made Sat Aug 31 11:27:49 2024 UTC 104s gpgv: using RSA key 8F6DE104377F3B11E741748731F3144544A1741A 104s gpgv: issuer "tchet@debian.org" 104s gpgv: Can't check signature: No public key 104s dpkg-source: warning: cannot verify inline signature for ./multiqc_1.21+dfsg-2.dsc: no acceptable signature found 105s autopkgtest [03:44:42]: testing package multiqc version 1.21+dfsg-2 106s autopkgtest [03:44:43]: build not needed 110s autopkgtest [03:44:47]: test run-unit-test: preparing testbed 110s Reading package lists... 111s Building dependency tree... 111s Reading state information... 111s Solving dependencies... 112s The following NEW packages will be installed: 112s blt fontconfig-config fonts-dejavu-core fonts-dejavu-mono 112s fonts-glyphicons-halflings fonts-lyx libblas3 libdeflate0 libfontconfig1 112s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libimagequant0 libjbig0 112s libjpeg-turbo8 libjpeg8 libjs-bootstrap libjs-jquery libjs-jquery-metadata 112s libjs-jquery-tablesorter libjs-jquery-ui liblapack3 liblcms2-2 liblerc4 112s libopenjp2-7 libqhull-r8.0 libraqm0 libsharpyuv0 libtcl8.6 libtiff6 libtk8.6 112s libwebp7 libwebpdemux2 libwebpmux3 libxft2 libxrender1 libxslt1.1 libxss1 112s libzopfli1 multiqc python-matplotlib-data python3-brotli python3-click 112s python3-coloredlogs python3-colormath python3-contourpy python3-cycler 112s python3-decorator python3-fastjsonschema python3-fonttools python3-fs 112s python3-humanfriendly python3-humanize python3-importlib-metadata 112s python3-jupyter-core python3-kiwisolver python3-lxml python3-lz4 112s python3-lzstring python3-markdown python3-matplotlib python3-mpmath 112s python3-nbformat python3-networkx python3-numpy python3-numpy-dev 112s python3-pil python3-pil.imagetk python3-platformdirs python3-plotly 112s python3-pyaml-env python3-pytz python3-rich-click python3-scipy 112s python3-spectra python3-sympy python3-tenacity python3-tk python3-traitlets 112s python3-tz python3-ufolib2 python3-unicodedata2 python3-zopfli python3.13-tk 112s python3.14-tk tk8.6-blt2.5 unicode-data x11-common 112s 0 upgraded, 89 newly installed, 0 to remove and 0 not upgraded. 112s Need to get 89.2 MB of archives. 112s After this operation, 463 MB of additional disk space will be used. 112s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-numpy-dev arm64 1:2.2.4+ds-1ubuntu1 [146 kB] 112s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 libblas3 arm64 3.12.1-7 [181 kB] 112s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 libgfortran5 arm64 15.2.0-7ubuntu1 [450 kB] 112s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 liblapack3 arm64 3.12.1-7 [2300 kB] 113s Get:5 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-numpy arm64 1:2.2.4+ds-1ubuntu1 [3986 kB] 113s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 libtcl8.6 arm64 8.6.17+dfsg-1 [1024 kB] 113s Get:7 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 113s Get:8 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 113s Get:9 http://ftpmaster.internal/ubuntu resolute/main arm64 fontconfig-config arm64 2.15.0-2.3ubuntu1 [38.1 kB] 113s Get:10 http://ftpmaster.internal/ubuntu resolute/main arm64 libfontconfig1 arm64 2.15.0-2.3ubuntu1 [144 kB] 113s Get:11 http://ftpmaster.internal/ubuntu resolute/main arm64 libxrender1 arm64 1:0.9.12-1 [19.5 kB] 113s Get:12 http://ftpmaster.internal/ubuntu resolute/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB] 113s Get:13 http://ftpmaster.internal/ubuntu resolute/main arm64 x11-common all 1:7.7+24ubuntu1 [22.4 kB] 113s Get:14 http://ftpmaster.internal/ubuntu resolute/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B] 113s Get:15 http://ftpmaster.internal/ubuntu resolute/main arm64 libtk8.6 arm64 8.6.17-1 [811 kB] 113s Get:16 http://ftpmaster.internal/ubuntu resolute/main arm64 tk8.6-blt2.5 arm64 2.5.3+dfsg-8 [624 kB] 113s Get:17 http://ftpmaster.internal/ubuntu resolute/main arm64 blt arm64 2.5.3+dfsg-8 [4824 B] 113s Get:18 http://ftpmaster.internal/ubuntu resolute/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-6 [119 kB] 113s Get:19 http://ftpmaster.internal/ubuntu resolute/universe arm64 fonts-lyx all 2.4.4-2 [171 kB] 113s Get:20 http://ftpmaster.internal/ubuntu resolute/main arm64 libdeflate0 arm64 1.23-2 [46.4 kB] 113s Get:21 http://ftpmaster.internal/ubuntu resolute/main arm64 libgomp1 arm64 15.2.0-7ubuntu1 [147 kB] 113s Get:22 http://ftpmaster.internal/ubuntu resolute/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB] 113s Get:23 http://ftpmaster.internal/ubuntu resolute/main arm64 libharfbuzz0b arm64 12.1.0-1 [523 kB] 114s Get:24 http://ftpmaster.internal/ubuntu resolute/main arm64 libimagequant0 arm64 2.18.0-1build1 [37.1 kB] 114s Get:25 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg-turbo8 arm64 2.1.5-4ubuntu2 [165 kB] 114s Get:26 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 114s Get:27 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-bootstrap all 3.4.1+dfsg-6 [129 kB] 114s Get:28 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 libjs-jquery all 3.7.1+dfsg+~3.5.33-1build1 [321 kB] 114s Get:29 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-jquery-metadata all 12-4 [6582 B] 114s Get:30 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-jquery-tablesorter all 1:2.31.3+dfsg1-4 [192 kB] 114s Get:31 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 114s Get:32 http://ftpmaster.internal/ubuntu resolute/main arm64 liblcms2-2 arm64 2.16-2 [170 kB] 114s Get:33 http://ftpmaster.internal/ubuntu resolute/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB] 114s Get:34 http://ftpmaster.internal/ubuntu resolute/universe arm64 libqhull-r8.0 arm64 2020.2-7 [190 kB] 114s Get:35 http://ftpmaster.internal/ubuntu resolute/main arm64 libraqm0 arm64 0.10.3-1 [15.0 kB] 114s Get:36 http://ftpmaster.internal/ubuntu resolute/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB] 114s Get:37 http://ftpmaster.internal/ubuntu resolute/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB] 114s Get:38 http://ftpmaster.internal/ubuntu resolute/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB] 114s Get:39 http://ftpmaster.internal/ubuntu resolute/main arm64 libtiff6 arm64 4.7.0-3ubuntu3 [196 kB] 114s Get:40 http://ftpmaster.internal/ubuntu resolute/main arm64 libwebpdemux2 arm64 1.5.0-0.1 [12.5 kB] 114s Get:41 http://ftpmaster.internal/ubuntu resolute/main arm64 libwebpmux3 arm64 1.5.0-0.1 [25.4 kB] 114s Get:42 http://ftpmaster.internal/ubuntu resolute/main arm64 libxslt1.1 arm64 1.1.43-0.3 [172 kB] 114s Get:43 http://ftpmaster.internal/ubuntu resolute/universe arm64 libzopfli1 arm64 1.0.3-3 [108 kB] 114s Get:44 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-click all 8.2.0+0.really.8.1.8-1 [80.0 kB] 114s Get:45 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-humanfriendly all 10.0-6 [70.8 kB] 114s Get:46 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-coloredlogs all 15.0.1-1 [38.2 kB] 114s Get:47 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-humanize all 4.12.1-1 [58.3 kB] 114s Get:48 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-importlib-metadata all 8.7.0-2 [21.0 kB] 114s Get:49 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 python3-markdown all 3.10-1 [75.9 kB] 114s Get:50 http://ftpmaster.internal/ubuntu resolute/universe arm64 python-matplotlib-data all 3.10.7+dfsg1-1 [2930 kB] 114s Get:51 http://ftpmaster.internal/ubuntu resolute/main arm64 libopenjp2-7 arm64 2.5.3-2.1 [179 kB] 114s Get:52 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-pil arm64 11.3.0-1ubuntu2 [492 kB] 114s Get:53 http://ftpmaster.internal/ubuntu resolute/main arm64 python3.14-tk arm64 3.14.0-4 [107 kB] 114s Get:54 http://ftpmaster.internal/ubuntu resolute/main arm64 python3.13-tk arm64 3.13.9-1 [106 kB] 114s Get:55 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-tk arm64 3.13.9-1 [8946 B] 114s Get:56 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pil.imagetk arm64 11.3.0-1ubuntu2 [9582 B] 114s Get:57 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-contourpy arm64 1.3.1-2 [240 kB] 114s Get:58 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-cycler all 0.12.1-2 [9850 B] 114s Get:59 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-brotli arm64 1.1.0-2build6 [343 kB] 114s Get:60 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-platformdirs all 4.3.7-1 [16.9 kB] 114s Get:61 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-fs all 2.4.16-8ubuntu1 [91.1 kB] 114s Get:62 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-lxml arm64 6.0.2-1 [2155 kB] 114s Get:63 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-lz4 arm64 4.4.4+dfsg-3 [27.6 kB] 114s Get:64 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-decorator all 5.2.1-2 [28.1 kB] 114s Get:65 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-scipy arm64 1.15.3-1ubuntu1 [18.7 MB] 116s Get:66 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-mpmath all 1.3.0-2 [423 kB] 116s Get:67 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-sympy all 1.14.0-2 [4306 kB] 116s Get:68 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-ufolib2 all 0.17.1+dfsg1-1 [33.5 kB] 116s Get:69 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-unicodedata2 arm64 16.0.0+ds-1build1 [398 kB] 116s Get:70 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-zopfli arm64 0.2.3.post1-1 [10.7 kB] 116s Get:71 http://ftpmaster.internal/ubuntu resolute/universe arm64 unicode-data all 16.0.0-1 [9513 kB] 117s Get:72 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-fonttools arm64 4.57.0-2build1 [1648 kB] 117s Get:73 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-kiwisolver arm64 1.4.10~rc0-1 [60.1 kB] 117s Get:74 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-matplotlib arm64 3.10.7+dfsg1-1 [17.1 MB] 118s Get:75 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-pytz all 2025.2-4 [32.3 kB] 118s Get:76 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-tz all 2025.2-4 [1746 B] 118s Get:77 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-fastjsonschema all 2.21.1-1 [20.4 kB] 118s Get:78 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-traitlets all 5.14.3+really5.14.3-1 [71.5 kB] 118s Get:79 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-jupyter-core all 5.7.2-5 [28.1 kB] 118s Get:80 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-nbformat all 5.9.1-1 [41.2 kB] 118s Get:81 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-tenacity all 9.0.0-0ubuntu1 [17.0 kB] 118s Get:82 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-plotly all 5.20.0+dfsg-1 [2766 kB] 118s Get:83 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pyaml-env all 1.2.1-2 [9090 B] 118s Get:84 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-rich-click all 1.6.0-2 [18.0 kB] 118s Get:85 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-networkx all 3.2.1-4ubuntu1 [11.5 MB] 119s Get:86 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-colormath all 3.0.0-4 [36.6 kB] 119s Get:87 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-spectra all 0.1.0-1 [17.2 kB] 119s Get:88 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-lzstring all 1.0.4-3 [6262 B] 119s Get:89 http://ftpmaster.internal/ubuntu resolute/universe arm64 multiqc all 1.21+dfsg-2 [733 kB] 119s Fetched 89.2 MB in 7s (12.9 MB/s) 119s Selecting previously unselected package python3-numpy-dev:arm64. 120s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 88090 files and directories currently installed.) 120s Preparing to unpack .../00-python3-numpy-dev_1%3a2.2.4+ds-1ubuntu1_arm64.deb ... 120s Unpacking python3-numpy-dev:arm64 (1:2.2.4+ds-1ubuntu1) ... 120s Selecting previously unselected package libblas3:arm64. 120s Preparing to unpack .../01-libblas3_3.12.1-7_arm64.deb ... 120s Unpacking libblas3:arm64 (3.12.1-7) ... 120s Selecting previously unselected package libgfortran5:arm64. 120s Preparing to unpack .../02-libgfortran5_15.2.0-7ubuntu1_arm64.deb ... 120s Unpacking libgfortran5:arm64 (15.2.0-7ubuntu1) ... 120s Selecting previously unselected package liblapack3:arm64. 120s Preparing to unpack .../03-liblapack3_3.12.1-7_arm64.deb ... 120s Unpacking liblapack3:arm64 (3.12.1-7) ... 120s Selecting previously unselected package python3-numpy. 120s Preparing to unpack .../04-python3-numpy_1%3a2.2.4+ds-1ubuntu1_arm64.deb ... 120s Unpacking python3-numpy (1:2.2.4+ds-1ubuntu1) ... 120s Selecting previously unselected package libtcl8.6:arm64. 120s Preparing to unpack .../05-libtcl8.6_8.6.17+dfsg-1_arm64.deb ... 120s Unpacking libtcl8.6:arm64 (8.6.17+dfsg-1) ... 120s Selecting previously unselected package fonts-dejavu-mono. 120s Preparing to unpack .../06-fonts-dejavu-mono_2.37-8_all.deb ... 120s Unpacking fonts-dejavu-mono (2.37-8) ... 120s Selecting previously unselected package fonts-dejavu-core. 120s Preparing to unpack .../07-fonts-dejavu-core_2.37-8_all.deb ... 120s Unpacking fonts-dejavu-core (2.37-8) ... 120s Selecting previously unselected package fontconfig-config. 121s Preparing to unpack .../08-fontconfig-config_2.15.0-2.3ubuntu1_arm64.deb ... 122s Unpacking fontconfig-config (2.15.0-2.3ubuntu1) ... 122s Selecting previously unselected package libfontconfig1:arm64. 122s Preparing to unpack .../09-libfontconfig1_2.15.0-2.3ubuntu1_arm64.deb ... 122s Unpacking libfontconfig1:arm64 (2.15.0-2.3ubuntu1) ... 122s Selecting previously unselected package libxrender1:arm64. 122s Preparing to unpack .../10-libxrender1_1%3a0.9.12-1_arm64.deb ... 122s Unpacking libxrender1:arm64 (1:0.9.12-1) ... 122s Selecting previously unselected package libxft2:arm64. 122s Preparing to unpack .../11-libxft2_2.3.6-1build1_arm64.deb ... 122s Unpacking libxft2:arm64 (2.3.6-1build1) ... 122s Selecting previously unselected package x11-common. 122s Preparing to unpack .../12-x11-common_1%3a7.7+24ubuntu1_all.deb ... 122s Unpacking x11-common (1:7.7+24ubuntu1) ... 122s Selecting previously unselected package libxss1:arm64. 122s Preparing to unpack .../13-libxss1_1%3a1.2.3-1build3_arm64.deb ... 122s Unpacking libxss1:arm64 (1:1.2.3-1build3) ... 122s Selecting previously unselected package libtk8.6:arm64. 122s Preparing to unpack .../14-libtk8.6_8.6.17-1_arm64.deb ... 122s Unpacking libtk8.6:arm64 (8.6.17-1) ... 122s Selecting previously unselected package tk8.6-blt2.5. 122s Preparing to unpack .../15-tk8.6-blt2.5_2.5.3+dfsg-8_arm64.deb ... 122s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-8) ... 122s Selecting previously unselected package blt. 122s Preparing to unpack .../16-blt_2.5.3+dfsg-8_arm64.deb ... 122s Unpacking blt (2.5.3+dfsg-8) ... 122s Selecting previously unselected package fonts-glyphicons-halflings. 122s Preparing to unpack .../17-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-6_all.deb ... 122s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-6) ... 122s Selecting previously unselected package fonts-lyx. 122s Preparing to unpack .../18-fonts-lyx_2.4.4-2_all.deb ... 122s Unpacking fonts-lyx (2.4.4-2) ... 122s Selecting previously unselected package libdeflate0:arm64. 122s Preparing to unpack .../19-libdeflate0_1.23-2_arm64.deb ... 122s Unpacking libdeflate0:arm64 (1.23-2) ... 122s Selecting previously unselected package libgomp1:arm64. 122s Preparing to unpack .../20-libgomp1_15.2.0-7ubuntu1_arm64.deb ... 122s Unpacking libgomp1:arm64 (15.2.0-7ubuntu1) ... 122s Selecting previously unselected package libgraphite2-3:arm64. 122s Preparing to unpack .../21-libgraphite2-3_1.3.14-2ubuntu1_arm64.deb ... 122s Unpacking libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 122s Selecting previously unselected package libharfbuzz0b:arm64. 122s Preparing to unpack .../22-libharfbuzz0b_12.1.0-1_arm64.deb ... 122s Unpacking libharfbuzz0b:arm64 (12.1.0-1) ... 122s Selecting previously unselected package libimagequant0:arm64. 122s Preparing to unpack .../23-libimagequant0_2.18.0-1build1_arm64.deb ... 122s Unpacking libimagequant0:arm64 (2.18.0-1build1) ... 122s Selecting previously unselected package libjpeg-turbo8:arm64. 122s Preparing to unpack .../24-libjpeg-turbo8_2.1.5-4ubuntu2_arm64.deb ... 122s Unpacking libjpeg-turbo8:arm64 (2.1.5-4ubuntu2) ... 122s Selecting previously unselected package libjpeg8:arm64. 122s Preparing to unpack .../25-libjpeg8_8c-2ubuntu11_arm64.deb ... 122s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 122s Selecting previously unselected package libjs-bootstrap. 122s Preparing to unpack .../26-libjs-bootstrap_3.4.1+dfsg-6_all.deb ... 122s Unpacking libjs-bootstrap (3.4.1+dfsg-6) ... 122s Selecting previously unselected package libjs-jquery. 122s Preparing to unpack .../27-libjs-jquery_3.7.1+dfsg+~3.5.33-1build1_all.deb ... 122s Unpacking libjs-jquery (3.7.1+dfsg+~3.5.33-1build1) ... 122s Selecting previously unselected package libjs-jquery-metadata. 122s Preparing to unpack .../28-libjs-jquery-metadata_12-4_all.deb ... 122s Unpacking libjs-jquery-metadata (12-4) ... 122s Selecting previously unselected package libjs-jquery-tablesorter. 122s Preparing to unpack .../29-libjs-jquery-tablesorter_1%3a2.31.3+dfsg1-4_all.deb ... 122s Unpacking libjs-jquery-tablesorter (1:2.31.3+dfsg1-4) ... 122s Selecting previously unselected package libjs-jquery-ui. 122s Preparing to unpack .../30-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 122s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 122s Selecting previously unselected package liblcms2-2:arm64. 123s Preparing to unpack .../31-liblcms2-2_2.16-2_arm64.deb ... 123s Unpacking liblcms2-2:arm64 (2.16-2) ... 123s Selecting previously unselected package liblerc4:arm64. 123s Preparing to unpack .../32-liblerc4_4.0.0+ds-5ubuntu1_arm64.deb ... 123s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 123s Selecting previously unselected package libqhull-r8.0:arm64. 123s Preparing to unpack .../33-libqhull-r8.0_2020.2-7_arm64.deb ... 123s Unpacking libqhull-r8.0:arm64 (2020.2-7) ... 123s Selecting previously unselected package libraqm0:arm64. 123s Preparing to unpack .../34-libraqm0_0.10.3-1_arm64.deb ... 123s Unpacking libraqm0:arm64 (0.10.3-1) ... 123s Selecting previously unselected package libsharpyuv0:arm64. 123s Preparing to unpack .../35-libsharpyuv0_1.5.0-0.1_arm64.deb ... 123s Unpacking libsharpyuv0:arm64 (1.5.0-0.1) ... 123s Selecting previously unselected package libjbig0:arm64. 123s Preparing to unpack .../36-libjbig0_2.1-6.1ubuntu2_arm64.deb ... 123s Unpacking libjbig0:arm64 (2.1-6.1ubuntu2) ... 123s Selecting previously unselected package libwebp7:arm64. 123s Preparing to unpack .../37-libwebp7_1.5.0-0.1_arm64.deb ... 123s Unpacking libwebp7:arm64 (1.5.0-0.1) ... 123s Selecting previously unselected package libtiff6:arm64. 123s Preparing to unpack .../38-libtiff6_4.7.0-3ubuntu3_arm64.deb ... 123s Unpacking libtiff6:arm64 (4.7.0-3ubuntu3) ... 123s Selecting previously unselected package libwebpdemux2:arm64. 123s Preparing to unpack .../39-libwebpdemux2_1.5.0-0.1_arm64.deb ... 123s Unpacking libwebpdemux2:arm64 (1.5.0-0.1) ... 123s Selecting previously unselected package libwebpmux3:arm64. 123s Preparing to unpack .../40-libwebpmux3_1.5.0-0.1_arm64.deb ... 123s Unpacking libwebpmux3:arm64 (1.5.0-0.1) ... 123s Selecting previously unselected package libxslt1.1:arm64. 123s Preparing to unpack .../41-libxslt1.1_1.1.43-0.3_arm64.deb ... 123s Unpacking libxslt1.1:arm64 (1.1.43-0.3) ... 123s Selecting previously unselected package libzopfli1. 123s Preparing to unpack .../42-libzopfli1_1.0.3-3_arm64.deb ... 123s Unpacking libzopfli1 (1.0.3-3) ... 123s Selecting previously unselected package python3-click. 123s Preparing to unpack .../43-python3-click_8.2.0+0.really.8.1.8-1_all.deb ... 123s Unpacking python3-click (8.2.0+0.really.8.1.8-1) ... 123s Selecting previously unselected package python3-humanfriendly. 123s Preparing to unpack .../44-python3-humanfriendly_10.0-6_all.deb ... 123s Unpacking python3-humanfriendly (10.0-6) ... 123s Selecting previously unselected package python3-coloredlogs. 123s Preparing to unpack .../45-python3-coloredlogs_15.0.1-1_all.deb ... 123s Unpacking python3-coloredlogs (15.0.1-1) ... 123s Selecting previously unselected package python3-humanize. 123s Preparing to unpack .../46-python3-humanize_4.12.1-1_all.deb ... 123s Unpacking python3-humanize (4.12.1-1) ... 124s Selecting previously unselected package python3-importlib-metadata. 124s Preparing to unpack .../47-python3-importlib-metadata_8.7.0-2_all.deb ... 124s Unpacking python3-importlib-metadata (8.7.0-2) ... 124s Selecting previously unselected package python3-markdown. 124s Preparing to unpack .../48-python3-markdown_3.10-1_all.deb ... 124s Unpacking python3-markdown (3.10-1) ... 124s Selecting previously unselected package python-matplotlib-data. 124s Preparing to unpack .../49-python-matplotlib-data_3.10.7+dfsg1-1_all.deb ... 124s Unpacking python-matplotlib-data (3.10.7+dfsg1-1) ... 124s Selecting previously unselected package libopenjp2-7:arm64. 124s Preparing to unpack .../50-libopenjp2-7_2.5.3-2.1_arm64.deb ... 124s Unpacking libopenjp2-7:arm64 (2.5.3-2.1) ... 124s Selecting previously unselected package python3-pil:arm64. 124s Preparing to unpack .../51-python3-pil_11.3.0-1ubuntu2_arm64.deb ... 124s Unpacking python3-pil:arm64 (11.3.0-1ubuntu2) ... 124s Selecting previously unselected package python3.14-tk. 124s Preparing to unpack .../52-python3.14-tk_3.14.0-4_arm64.deb ... 124s Unpacking python3.14-tk (3.14.0-4) ... 124s Selecting previously unselected package python3.13-tk. 124s Preparing to unpack .../53-python3.13-tk_3.13.9-1_arm64.deb ... 124s Unpacking python3.13-tk (3.13.9-1) ... 124s Selecting previously unselected package python3-tk:arm64. 124s Preparing to unpack .../54-python3-tk_3.13.9-1_arm64.deb ... 124s Unpacking python3-tk:arm64 (3.13.9-1) ... 124s Selecting previously unselected package python3-pil.imagetk:arm64. 124s Preparing to unpack .../55-python3-pil.imagetk_11.3.0-1ubuntu2_arm64.deb ... 124s Unpacking python3-pil.imagetk:arm64 (11.3.0-1ubuntu2) ... 124s Selecting previously unselected package python3-contourpy. 124s Preparing to unpack .../56-python3-contourpy_1.3.1-2_arm64.deb ... 124s Unpacking python3-contourpy (1.3.1-2) ... 124s Selecting previously unselected package python3-cycler. 124s Preparing to unpack .../57-python3-cycler_0.12.1-2_all.deb ... 124s Unpacking python3-cycler (0.12.1-2) ... 124s Selecting previously unselected package python3-brotli. 124s Preparing to unpack .../58-python3-brotli_1.1.0-2build6_arm64.deb ... 124s Unpacking python3-brotli (1.1.0-2build6) ... 124s Selecting previously unselected package python3-platformdirs. 124s Preparing to unpack .../59-python3-platformdirs_4.3.7-1_all.deb ... 124s Unpacking python3-platformdirs (4.3.7-1) ... 125s Selecting previously unselected package python3-fs. 125s Preparing to unpack .../60-python3-fs_2.4.16-8ubuntu1_all.deb ... 125s Unpacking python3-fs (2.4.16-8ubuntu1) ... 125s Selecting previously unselected package python3-lxml:arm64. 125s Preparing to unpack .../61-python3-lxml_6.0.2-1_arm64.deb ... 125s Unpacking python3-lxml:arm64 (6.0.2-1) ... 125s Selecting previously unselected package python3-lz4. 125s Preparing to unpack .../62-python3-lz4_4.4.4+dfsg-3_arm64.deb ... 125s Unpacking python3-lz4 (4.4.4+dfsg-3) ... 125s Selecting previously unselected package python3-decorator. 125s Preparing to unpack .../63-python3-decorator_5.2.1-2_all.deb ... 125s Unpacking python3-decorator (5.2.1-2) ... 125s Selecting previously unselected package python3-scipy. 125s Preparing to unpack .../64-python3-scipy_1.15.3-1ubuntu1_arm64.deb ... 125s Unpacking python3-scipy (1.15.3-1ubuntu1) ... 126s Selecting previously unselected package python3-mpmath. 126s Preparing to unpack .../65-python3-mpmath_1.3.0-2_all.deb ... 126s Unpacking python3-mpmath (1.3.0-2) ... 126s Selecting previously unselected package python3-sympy. 126s Preparing to unpack .../66-python3-sympy_1.14.0-2_all.deb ... 126s Unpacking python3-sympy (1.14.0-2) ... 126s Selecting previously unselected package python3-ufolib2. 126s Preparing to unpack .../67-python3-ufolib2_0.17.1+dfsg1-1_all.deb ... 126s Unpacking python3-ufolib2 (0.17.1+dfsg1-1) ... 126s Selecting previously unselected package python3-unicodedata2. 126s Preparing to unpack .../68-python3-unicodedata2_16.0.0+ds-1build1_arm64.deb ... 126s Unpacking python3-unicodedata2 (16.0.0+ds-1build1) ... 126s Selecting previously unselected package python3-zopfli. 126s Preparing to unpack .../69-python3-zopfli_0.2.3.post1-1_arm64.deb ... 126s Unpacking python3-zopfli (0.2.3.post1-1) ... 126s Selecting previously unselected package unicode-data. 126s Preparing to unpack .../70-unicode-data_16.0.0-1_all.deb ... 126s Unpacking unicode-data (16.0.0-1) ... 127s Selecting previously unselected package python3-fonttools. 127s Preparing to unpack .../71-python3-fonttools_4.57.0-2build1_arm64.deb ... 127s Unpacking python3-fonttools (4.57.0-2build1) ... 127s Selecting previously unselected package python3-kiwisolver. 127s Preparing to unpack .../72-python3-kiwisolver_1.4.10~rc0-1_arm64.deb ... 127s Unpacking python3-kiwisolver (1.4.10~rc0-1) ... 127s Selecting previously unselected package python3-matplotlib. 127s Preparing to unpack .../73-python3-matplotlib_3.10.7+dfsg1-1_arm64.deb ... 127s Unpacking python3-matplotlib (3.10.7+dfsg1-1) ... 128s Selecting previously unselected package python3-pytz. 128s Preparing to unpack .../74-python3-pytz_2025.2-4_all.deb ... 128s Unpacking python3-pytz (2025.2-4) ... 128s Selecting previously unselected package python3-tz. 128s Preparing to unpack .../75-python3-tz_2025.2-4_all.deb ... 128s Unpacking python3-tz (2025.2-4) ... 128s Selecting previously unselected package python3-fastjsonschema. 128s Preparing to unpack .../76-python3-fastjsonschema_2.21.1-1_all.deb ... 128s Unpacking python3-fastjsonschema (2.21.1-1) ... 128s Selecting previously unselected package python3-traitlets. 128s Preparing to unpack .../77-python3-traitlets_5.14.3+really5.14.3-1_all.deb ... 128s Unpacking python3-traitlets (5.14.3+really5.14.3-1) ... 128s Selecting previously unselected package python3-jupyter-core. 128s Preparing to unpack .../78-python3-jupyter-core_5.7.2-5_all.deb ... 128s Unpacking python3-jupyter-core (5.7.2-5) ... 128s Selecting previously unselected package python3-nbformat. 128s Preparing to unpack .../79-python3-nbformat_5.9.1-1_all.deb ... 128s Unpacking python3-nbformat (5.9.1-1) ... 128s Selecting previously unselected package python3-tenacity. 128s Preparing to unpack .../80-python3-tenacity_9.0.0-0ubuntu1_all.deb ... 128s Unpacking python3-tenacity (9.0.0-0ubuntu1) ... 128s Selecting previously unselected package python3-plotly. 128s Preparing to unpack .../81-python3-plotly_5.20.0+dfsg-1_all.deb ... 128s Unpacking python3-plotly (5.20.0+dfsg-1) ... 129s Selecting previously unselected package python3-pyaml-env. 129s Preparing to unpack .../82-python3-pyaml-env_1.2.1-2_all.deb ... 129s Unpacking python3-pyaml-env (1.2.1-2) ... 129s Selecting previously unselected package python3-rich-click. 129s Preparing to unpack .../83-python3-rich-click_1.6.0-2_all.deb ... 129s Unpacking python3-rich-click (1.6.0-2) ... 130s Selecting previously unselected package python3-networkx. 130s Preparing to unpack .../84-python3-networkx_3.2.1-4ubuntu1_all.deb ... 130s Unpacking python3-networkx (3.2.1-4ubuntu1) ... 130s Selecting previously unselected package python3-colormath. 130s Preparing to unpack .../85-python3-colormath_3.0.0-4_all.deb ... 130s Unpacking python3-colormath (3.0.0-4) ... 130s Selecting previously unselected package python3-spectra. 130s Preparing to unpack .../86-python3-spectra_0.1.0-1_all.deb ... 130s Unpacking python3-spectra (0.1.0-1) ... 130s Selecting previously unselected package python3-lzstring. 130s Preparing to unpack .../87-python3-lzstring_1.0.4-3_all.deb ... 130s Unpacking python3-lzstring (1.0.4-3) ... 130s Selecting previously unselected package multiqc. 130s Preparing to unpack .../88-multiqc_1.21+dfsg-2_all.deb ... 130s Unpacking multiqc (1.21+dfsg-2) ... 131s Setting up libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 131s Setting up liblcms2-2:arm64 (2.16-2) ... 131s Setting up libsharpyuv0:arm64 (1.5.0-0.1) ... 131s Setting up liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 131s Setting up python3-importlib-metadata (8.7.0-2) ... 131s Setting up libxrender1:arm64 (1:0.9.12-1) ... 131s Setting up python3-lz4 (4.4.4+dfsg-3) ... 131s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-6) ... 131s Setting up python3-unicodedata2 (16.0.0+ds-1build1) ... 131s Setting up fonts-lyx (2.4.4-2) ... 131s Setting up python3-tenacity (9.0.0-0ubuntu1) ... 131s Setting up x11-common (1:7.7+24ubuntu1) ... 132s Setting up libdeflate0:arm64 (1.23-2) ... 132s Setting up libqhull-r8.0:arm64 (2020.2-7) ... 132s Setting up python3-pytz (2025.2-4) ... 132s Setting up libgomp1:arm64 (15.2.0-7ubuntu1) ... 132s Setting up python3-click (8.2.0+0.really.8.1.8-1) ... 132s Setting up python3-networkx (3.2.1-4ubuntu1) ... 134s Setting up libjbig0:arm64 (2.1-6.1ubuntu2) ... 134s Setting up python3-platformdirs (4.3.7-1) ... 134s Setting up python3-tz (2025.2-4) ... 134s Setting up python3-fs (2.4.16-8ubuntu1) ... 135s Setting up unicode-data (16.0.0-1) ... 135s Setting up python3-decorator (5.2.1-2) ... 135s Setting up libblas3:arm64 (3.12.1-7) ... 135s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 135s Setting up python3-pyaml-env (1.2.1-2) ... 135s /usr/lib/python3/dist-packages/pyaml_env/parse_config.py:58: SyntaxWarning: invalid escape sequence '\w' 135s type_tag_pattern = re.compile(f'({type_tag}\w+\s)') 135s Setting up libzopfli1 (1.0.3-3) ... 135s Setting up python3-humanfriendly (10.0-6) ... 135s Setting up python3-brotli (1.1.0-2build6) ... 136s Setting up python3-cycler (0.12.1-2) ... 136s Setting up libimagequant0:arm64 (2.18.0-1build1) ... 136s Setting up fonts-dejavu-mono (2.37-8) ... 136s Setting up python3-kiwisolver (1.4.10~rc0-1) ... 136s Setting up python3-numpy-dev:arm64 (1:2.2.4+ds-1ubuntu1) ... 136s Setting up python3-markdown (3.10-1) ... 136s Setting up libtcl8.6:arm64 (8.6.17+dfsg-1) ... 136s Setting up fonts-dejavu-core (2.37-8) ... 136s Setting up libjpeg-turbo8:arm64 (2.1.5-4ubuntu2) ... 136s Setting up libgfortran5:arm64 (15.2.0-7ubuntu1) ... 136s Setting up libwebp7:arm64 (1.5.0-0.1) ... 136s Setting up python3-rich-click (1.6.0-2) ... 137s Setting up python3-fastjsonschema (2.21.1-1) ... 137s Setting up python3-traitlets (5.14.3+really5.14.3-1) ... 137s Setting up libxslt1.1:arm64 (1.1.43-0.3) ... 137s Setting up libopenjp2-7:arm64 (2.5.3-2.1) ... 137s Setting up libharfbuzz0b:arm64 (12.1.0-1) ... 137s Setting up libxss1:arm64 (1:1.2.3-1build3) ... 137s Setting up libjs-jquery (3.7.1+dfsg+~3.5.33-1build1) ... 137s Setting up python3-mpmath (1.3.0-2) ... 138s Setting up python3-lzstring (1.0.4-3) ... 138s Setting up python3-humanize (4.12.1-1) ... 138s Setting up python-matplotlib-data (3.10.7+dfsg1-1) ... 138s Setting up libwebpmux3:arm64 (1.5.0-0.1) ... 138s Setting up python3-coloredlogs (15.0.1-1) ... 139s Setting up python3-jupyter-core (5.7.2-5) ... 139s Setting up libjs-bootstrap (3.4.1+dfsg-6) ... 139s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 139s Setting up python3-sympy (1.14.0-2) ... 148s Setting up liblapack3:arm64 (3.12.1-7) ... 148s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 148s Setting up fontconfig-config (2.15.0-2.3ubuntu1) ... 148s Setting up libwebpdemux2:arm64 (1.5.0-0.1) ... 148s Setting up python3-nbformat (5.9.1-1) ... 149s Setting up python3-zopfli (0.2.3.post1-1) ... 149s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 149s Setting up libjs-jquery-metadata (12-4) ... 149s Setting up libraqm0:arm64 (0.10.3-1) ... 149s Setting up python3-plotly (5.20.0+dfsg-1) ... 157s Setting up python3-numpy (1:2.2.4+ds-1ubuntu1) ... 160s Setting up python3-colormath (3.0.0-4) ... 160s /usr/lib/python3/dist-packages/colormath/chromatic_adaptation.py:85: SyntaxWarning: invalid escape sequence '\*' 160s logger.debug(" \* Applying adaptation matrix: %s", adaptation) 160s /usr/lib/python3/dist-packages/colormath/color_appearance_models.py:692: SyntaxWarning: invalid escape sequence '\s' 160s :param sigma: Relative luminance parameter :math:`\sigma`. For average surround set :math:`\sigma=1/2.3`, 160s /usr/lib/python3/dist-packages/colormath/color_appearance_models.py:798: SyntaxWarning: invalid escape sequence '\s' 160s :param sigma: :math:`\sigma` 160s /usr/lib/python3/dist-packages/colormath/color_conversions.py:40: SyntaxWarning: invalid escape sequence '\*' 160s logger.debug(" \* Applying RGB conversion matrix: %s->%s", 160s /usr/lib/python3/dist-packages/colormath/color_conversions.py:488: SyntaxWarning: invalid escape sequence '\-' 160s logger.debug(" \- Target RGB space: %s", target_rgb) 160s /usr/lib/python3/dist-packages/colormath/color_conversions.py:490: SyntaxWarning: invalid escape sequence '\-' 160s logger.debug(" \- Target native illuminant: %s", target_illum) 160s /usr/lib/python3/dist-packages/colormath/color_conversions.py:491: SyntaxWarning: invalid escape sequence '\-' 160s logger.debug(" \- XYZ color's illuminant: %s", cobj.illuminant) 160s /usr/lib/python3/dist-packages/colormath/color_conversions.py:497: SyntaxWarning: invalid escape sequence '\*' 160s logger.debug(" \* Applying transformation from %s to %s ", 160s /usr/lib/python3/dist-packages/colormath/color_conversions.py:503: SyntaxWarning: invalid escape sequence '\*' 160s logger.debug(" \* New values: %.3f, %.3f, %.3f", 160s /usr/lib/python3/dist-packages/colormath/color_objects.py:452: SyntaxWarning: invalid escape sequence '\-' 160s logger.debug(" \- Original illuminant: %s", self.illuminant) 160s /usr/lib/python3/dist-packages/colormath/color_objects.py:453: SyntaxWarning: invalid escape sequence '\-' 160s logger.debug(" \- Target illuminant: %s", target_illuminant) 160s /usr/lib/python3/dist-packages/colormath/color_objects.py:459: SyntaxWarning: invalid escape sequence '\*' 160s logger.debug(" \* Applying transformation from %s to %s ", 160s Setting up libjs-jquery-tablesorter (1:2.31.3+dfsg1-4) ... 160s Setting up python3-lxml:arm64 (6.0.2-1) ... 160s Setting up libtiff6:arm64 (4.7.0-3ubuntu3) ... 160s Setting up python3-contourpy (1.3.1-2) ... 160s Setting up libfontconfig1:arm64 (2.15.0-2.3ubuntu1) ... 160s Setting up libxft2:arm64 (2.3.6-1build1) ... 160s Setting up python3-scipy (1.15.3-1ubuntu1) ... 164s Setting up python3-spectra (0.1.0-1) ... 165s Setting up libtk8.6:arm64 (8.6.17-1) ... 165s Setting up python3.13-tk (3.13.9-1) ... 165s Setting up python3-pil:arm64 (11.3.0-1ubuntu2) ... 165s Setting up tk8.6-blt2.5 (2.5.3+dfsg-8) ... 165s Setting up python3.14-tk (3.14.0-4) ... 165s Setting up blt (2.5.3+dfsg-8) ... 165s Setting up python3-tk:arm64 (3.13.9-1) ... 165s Setting up python3-pil.imagetk:arm64 (11.3.0-1ubuntu2) ... 165s Setting up python3-fonttools (4.57.0-2build1) ... 167s Setting up python3-ufolib2 (0.17.1+dfsg1-1) ... 167s Setting up python3-matplotlib (3.10.7+dfsg1-1) ... 169s Setting up multiqc (1.21+dfsg-2) ... 170s Processing triggers for libc-bin (2.42-0ubuntu3) ... 170s Processing triggers for man-db (2.13.1-1) ... 172s autopkgtest [03:45:49]: test run-unit-test: [----------------------- 173s 173s /// MultiQC 🔍 | v1.21 173s 173s Usage: multiqc [OPTIONS] [ANALYSIS DIRECTORY] 173s 173s MultiQC aggregates results from bioinformatics analyses across many samples 173s into a single report. 173s It searches a given directory for analysis logs and compiles a HTML report. 173s It's a general use tool, perfect for summarising the output from numerous 173s bioinformatics tools. 173s To run, supply with one or more directory to scan for analysis results. For 173s example, to run in the current working directory, use 'multiqc .' 173s 173s ╭─ Main options ───────────────────────────────────────────────────────────────╮ 173s │ --force -f Overwrite any existing reports │ 173s │ --config -c Specific config file to load, after those in MultiQC │ 173s │ dir / home dir / working dir. │ 173s │ (PATH) │ 173s │ --cl-config Specify MultiQC config YAML on the command line │ 173s │ (TEXT) │ 173s │ --filename -n Report filename. Use 'stdout' to print to standard │ 173s │ out. │ 173s │ (TEXT) │ 173s │ --outdir -o Create report in the specified output directory. │ 173s │ (TEXT) │ 173s │ --ignore -x Ignore analysis files (GLOB EXPRESSION) │ 173s │ --ignore-samples Ignore sample names (GLOB EXPRESSION) │ 173s │ --ignore-symlinks Ignore symlinked directories and files │ 173s │ --file-list -l Supply a file containing a list of file paths to be │ 173s │ searched, one per row │ 173s ╰──────────────────────────────────────────────────────────────────────────────╯ 173s ╭─ Choosing modules to run ────────────────────────────────────────────────────╮ 173s │ --module -m Use only this module. Can specify multiple times. │ 173s │ (MODULE NAME) │ 173s │ --exclude -e Do not use this module. Can specify multiple times. │ 173s │ (MODULE NAME) │ 173s ╰──────────────────────────────────────────────────────────────────────────────╯ 173s ╭─ Sample handling ────────────────────────────────────────────────────────────╮ 173s │ --dirs -d Prepend directory to sample names │ 173s │ --dirs-depth -dd Prepend n directories to sample names. Negative number │ 173s │ to take from start of path. │ 173s │ (INTEGER) │ 173s │ --fullnames -s Do not clean the sample names (leave as full file │ 173s │ name) │ 173s │ --fn_as_s_name Use the log filename as the sample name │ 173s │ --replace-names TSV file to rename sample names during report │ 173s │ generation │ 173s │ (PATH) │ 173s ╰──────────────────────────────────────────────────────────────────────────────╯ 173s ╭─ Report customisation ───────────────────────────────────────────────────────╮ 173s │ --title -i Report title. Printed as page header, used for │ 173s │ filename if not otherwise specified. │ 173s │ (TEXT) │ 173s │ --comment -b Custom comment, will be printed at the top of the │ 173s │ report. │ 173s │ (TEXT) │ 173s │ --template -t Report template to use. │ 173s │ (default|gathered|geo|highcharts|sections|simple) │ 173s │ --sample-names TSV file containing alternative sample names for │ 173s │ renaming buttons in the report │ 173s │ (PATH) │ 173s │ --sample-filters TSV file containing show/hide patterns for the report │ 173s │ (PATH) │ 173s │ --custom-css-file Custom CSS file to add to the final report (PATH) │ 173s ╰──────────────────────────────────────────────────────────────────────────────╯ 173s ╭─ Output files ───────────────────────────────────────────────────────────────╮ 173s │ --flat -fp Use only flat plots (static images) │ 173s │ --interactive -ip Use only interactive plots (in-browser Javascript) │ 173s │ --export -p Export plots as static images in addition to the report │ 173s │ --data-dir Force the parsed data directory to be created. │ 173s │ --no-data-dir Prevent the parsed data directory from being created. │ 173s │ --data-format -k Output parsed data in a different format. │ 173s │ (tsv|csv|json|yaml) │ 173s │ --zip-data-dir -z Compress the data directory. │ 173s │ --no-report Do not generate a report, only export data and plots │ 173s │ --pdf Creates PDF report with the 'simple' template. Requires │ 173s │ Pandoc to be installed. │ 173s ╰──────────────────────────────────────────────────────────────────────────────╯ 173s ╭─ MultiQC behaviour ──────────────────────────────────────────────────────────╮ 173s │ --verbose -v Increase output verbosity. (INTEGER RANGE) │ 173s │ --quiet -q Only show log warnings │ 173s │ --strict Don't catch exceptions, run additional code checks │ 173s │ to help development. │ 173s │ --development,--dev Development mode. Do not compress and minimise JS, │ 173s │ export uncompressed plot data │ 173s │ --require-logs Require all explicitly requested modules to have │ 173s │ log files. If not, MultiQC will exit with an error. │ 173s │ --profile-runtime Add analysis of how long MultiQC takes to run to │ 173s │ the report │ 173s │ --no-megaqc-upload Don't upload generated report to MegaQC, even if │ 173s │ MegaQC options are found │ 173s │ --no-ansi Disable coloured log output │ 173s │ --version Show the version and exit. │ 173s │ --help -h Show this message and exit. │ 173s ╰──────────────────────────────────────────────────────────────────────────────╯ 173s 173s See http://multiqc.info for more details. 173s 173s FIXME: The test data should be delivered in a separate binary package once freeze is over 174s 174s /// MultiQC 🔍 | v1.21 174s 175s | multiqc | MultiQC Version v1.32 now available! 175s | multiqc | Search path : /tmp/autopkgtest.kMxYeU/autopkgtest_tmp/data 175s | searching | ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 100% 121/121 175s | feature_counts | Found 8 reports 175s | star | Found 8 reports 175s | cutadapt | Found 16 reports 175s | fastqc | Found 32 reports 176s | multiqc | Report : multiqc_report.html 176s | multiqc | Data : multiqc_data 176s | multiqc | Could not include file 'assets/js/packages/jszip.min.js': [Errno 2] No such file or directory: '/tmp/tmprtp7q2wb/assets/js/packages/jszip.min.js' 176s | multiqc | Could not include file 'assets/js/packages/plotly-2.27.0.min.js': [Errno 2] No such file or directory: '/tmp/tmprtp7q2wb/assets/js/packages/plotly-2.27.0.min.js' 176s | multiqc | MultiQC complete 176s -e 176s PASS 176s 177s autopkgtest [03:45:54]: test run-unit-test: -----------------------] 177s autopkgtest [03:45:54]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 177s run-unit-test PASS 178s autopkgtest [03:45:55]: @@@@@@@@@@@@@@@@@@@@ summary 178s run-unit-test PASS