0s autopkgtest [16:54:32]: starting date and time: 2025-10-29 16:54:32+0000 0s autopkgtest [16:54:32]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [16:54:32]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.kh6bmba3/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:pillow --apt-upgrade multiqc --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=pillow/12.0.0-1ubuntu1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-18.secgroup --name adt-resolute-arm64-multiqc-20251029-165432-juju-7f2275-prod-proposed-migration-environment-2-619c136a-3f0e-476f-b8e9-1d2b281d8e30 --image adt/ubuntu-resolute-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 3s Creating nova instance adt-resolute-arm64-multiqc-20251029-165432-juju-7f2275-prod-proposed-migration-environment-2-619c136a-3f0e-476f-b8e9-1d2b281d8e30 from image adt/ubuntu-resolute-arm64-server-20251029.img (UUID 4abae604-564c-468a-9647-ef513510018c)... 62s autopkgtest [16:55:34]: testbed dpkg architecture: arm64 63s autopkgtest [16:55:35]: testbed apt version: 3.1.11 63s autopkgtest [16:55:35]: @@@@@@@@@@@@@@@@@@@@ test bed setup 63s autopkgtest [16:55:35]: testbed release detected to be: None 64s autopkgtest [16:55:36]: updating testbed package index (apt update) 65s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [87.8 kB] 65s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 65s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 65s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 65s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [5856 B] 65s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [70.5 kB] 65s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [205 kB] 65s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [3643 kB] 66s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 Packages [272 kB] 66s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 c-n-f Metadata [5700 B] 66s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 Packages [44.3 kB] 66s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 c-n-f Metadata [324 B] 66s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 Packages [2479 kB] 66s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 c-n-f Metadata [65.7 kB] 66s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 Packages [41.6 kB] 66s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 c-n-f Metadata [1620 B] 68s Fetched 6923 kB in 2s (3633 kB/s) 69s Reading package lists... 70s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 70s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 70s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 70s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 71s Reading package lists... 71s Reading package lists... 71s Building dependency tree... 71s Reading state information... 71s Calculating upgrade... 72s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 72s autopkgtest [16:55:44]: upgrading testbed (apt dist-upgrade and autopurge) 72s Reading package lists... 72s Building dependency tree... 72s Reading state information... 73s Calculating upgrade... 73s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 73s Reading package lists... 74s Building dependency tree... 74s Reading state information... 74s Solving dependencies... 74s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 77s autopkgtest [16:55:49]: testbed running kernel: Linux 6.17.0-5-generic #5-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 22 09:50:31 UTC 2025 78s autopkgtest [16:55:50]: @@@@@@@@@@@@@@@@@@@@ apt-source multiqc 81s Get:1 http://ftpmaster.internal/ubuntu resolute/universe multiqc 1.21+dfsg-2 (dsc) [2772 B] 81s Get:2 http://ftpmaster.internal/ubuntu resolute/universe multiqc 1.21+dfsg-2 (tar) [17.0 MB] 81s Get:3 http://ftpmaster.internal/ubuntu resolute/universe multiqc 1.21+dfsg-2 (tar) [1937 kB] 81s Get:4 http://ftpmaster.internal/ubuntu resolute/universe multiqc 1.21+dfsg-2 (diff) [11.9 kB] 81s gpgv: Signature made Sat Aug 31 11:27:49 2024 UTC 81s gpgv: using RSA key 8F6DE104377F3B11E741748731F3144544A1741A 81s gpgv: issuer "tchet@debian.org" 81s gpgv: Can't check signature: No public key 81s dpkg-source: warning: cannot verify inline signature for ./multiqc_1.21+dfsg-2.dsc: no acceptable signature found 82s autopkgtest [16:55:54]: testing package multiqc version 1.21+dfsg-2 83s autopkgtest [16:55:55]: build not needed 93s autopkgtest [16:56:05]: test run-unit-test: preparing testbed 93s Reading package lists... 93s Building dependency tree... 93s Reading state information... 93s Solving dependencies... 94s The following NEW packages will be installed: 94s blt fontconfig-config fonts-dejavu-core fonts-dejavu-mono 94s fonts-glyphicons-halflings fonts-lyx libblas3 libdeflate0 libfontconfig1 94s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libimagequant0 libjbig0 94s libjpeg-turbo8 libjpeg8 libjs-bootstrap libjs-jquery libjs-jquery-metadata 94s libjs-jquery-tablesorter libjs-jquery-ui liblapack3 liblcms2-2 liblerc4 94s libopenjp2-7 libqhull-r8.0 libraqm0 libsharpyuv0 libtcl8.6 libtiff6 libtk8.6 94s libwebp7 libwebpdemux2 libwebpmux3 libxft2 libxrender1 libxslt1.1 libxss1 94s libzopfli1 multiqc python-matplotlib-data python3-brotli python3-click 94s python3-coloredlogs python3-colormath python3-contourpy python3-cycler 94s python3-dateutil python3-decorator python3-fastjsonschema python3-fonttools 94s python3-fs python3-humanfriendly python3-humanize python3-importlib-metadata 94s python3-jupyter-core python3-kiwisolver python3-lxml python3-lz4 94s python3-lzstring python3-markdown python3-matplotlib python3-mpmath 94s python3-nbformat python3-networkx python3-numpy python3-numpy-dev 94s python3-packaging python3-pil python3-pil.imagetk python3-platformdirs 94s python3-plotly python3-pyaml-env python3-pytz python3-rich-click 94s python3-scipy python3-spectra python3-sympy python3-tenacity python3-tk 94s python3-traitlets python3-tz python3-ufolib2 python3-unicodedata2 94s python3-zopfli python3.13-tk python3.14-tk tk8.6-blt2.5 unicode-data 94s x11-common 94s 0 upgraded, 91 newly installed, 0 to remove and 0 not upgraded. 94s Need to get 89.3 MB of archives. 94s After this operation, 464 MB of additional disk space will be used. 94s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-numpy-dev arm64 1:2.2.4+ds-1ubuntu1 [146 kB] 95s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 libblas3 arm64 3.12.1-6build1 [186 kB] 95s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 libgfortran5 arm64 15.2.0-5ubuntu1 [450 kB] 95s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 liblapack3 arm64 3.12.1-6build1 [2340 kB] 95s Get:5 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-numpy arm64 1:2.2.4+ds-1ubuntu1 [3986 kB] 95s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 libtcl8.6 arm64 8.6.17+dfsg-1 [1024 kB] 95s Get:7 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 95s Get:8 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 96s Get:9 http://ftpmaster.internal/ubuntu resolute/main arm64 fontconfig-config arm64 2.15.0-2.3ubuntu1 [38.1 kB] 96s Get:10 http://ftpmaster.internal/ubuntu resolute/main arm64 libfontconfig1 arm64 2.15.0-2.3ubuntu1 [144 kB] 96s Get:11 http://ftpmaster.internal/ubuntu resolute/main arm64 libxrender1 arm64 1:0.9.12-1 [19.5 kB] 96s Get:12 http://ftpmaster.internal/ubuntu resolute/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB] 96s Get:13 http://ftpmaster.internal/ubuntu resolute/main arm64 x11-common all 1:7.7+24ubuntu1 [22.4 kB] 96s Get:14 http://ftpmaster.internal/ubuntu resolute/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B] 96s Get:15 http://ftpmaster.internal/ubuntu resolute/main arm64 libtk8.6 arm64 8.6.17-1 [811 kB] 96s Get:16 http://ftpmaster.internal/ubuntu resolute/main arm64 tk8.6-blt2.5 arm64 2.5.3+dfsg-8 [624 kB] 96s Get:17 http://ftpmaster.internal/ubuntu resolute/main arm64 blt arm64 2.5.3+dfsg-8 [4824 B] 96s Get:18 http://ftpmaster.internal/ubuntu resolute/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-6 [119 kB] 96s Get:19 http://ftpmaster.internal/ubuntu resolute/universe arm64 fonts-lyx all 2.4.4-1 [171 kB] 96s Get:20 http://ftpmaster.internal/ubuntu resolute/main arm64 libdeflate0 arm64 1.23-2 [46.4 kB] 96s Get:21 http://ftpmaster.internal/ubuntu resolute/main arm64 libgomp1 arm64 15.2.0-5ubuntu1 [148 kB] 96s Get:22 http://ftpmaster.internal/ubuntu resolute/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB] 96s Get:23 http://ftpmaster.internal/ubuntu resolute/main arm64 libharfbuzz0b arm64 12.1.0-1 [523 kB] 96s Get:24 http://ftpmaster.internal/ubuntu resolute/main arm64 libimagequant0 arm64 2.18.0-1build1 [37.1 kB] 96s Get:25 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg-turbo8 arm64 2.1.5-4ubuntu2 [165 kB] 96s Get:26 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 96s Get:27 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-bootstrap all 3.4.1+dfsg-6 [129 kB] 96s Get:28 http://ftpmaster.internal/ubuntu resolute/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 96s Get:29 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-jquery-metadata all 12-4 [6582 B] 96s Get:30 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-jquery-tablesorter all 1:2.31.3+dfsg1-4 [192 kB] 96s Get:31 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 96s Get:32 http://ftpmaster.internal/ubuntu resolute/main arm64 liblcms2-2 arm64 2.16-2 [170 kB] 96s Get:33 http://ftpmaster.internal/ubuntu resolute/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB] 96s Get:34 http://ftpmaster.internal/ubuntu resolute/universe arm64 libqhull-r8.0 arm64 2020.2-6build1 [189 kB] 96s Get:35 http://ftpmaster.internal/ubuntu resolute/main arm64 libraqm0 arm64 0.10.3-1 [15.0 kB] 96s Get:36 http://ftpmaster.internal/ubuntu resolute/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB] 96s Get:37 http://ftpmaster.internal/ubuntu resolute/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB] 96s Get:38 http://ftpmaster.internal/ubuntu resolute/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB] 96s Get:39 http://ftpmaster.internal/ubuntu resolute/main arm64 libtiff6 arm64 4.7.0-3ubuntu3 [196 kB] 96s Get:40 http://ftpmaster.internal/ubuntu resolute/main arm64 libwebpdemux2 arm64 1.5.0-0.1 [12.5 kB] 96s Get:41 http://ftpmaster.internal/ubuntu resolute/main arm64 libwebpmux3 arm64 1.5.0-0.1 [25.4 kB] 96s Get:42 http://ftpmaster.internal/ubuntu resolute/main arm64 libxslt1.1 arm64 1.1.43-0.3 [172 kB] 96s Get:43 http://ftpmaster.internal/ubuntu resolute/universe arm64 libzopfli1 arm64 1.0.3-3 [108 kB] 96s Get:44 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-click all 8.2.0+0.really.8.1.8-1 [80.0 kB] 96s Get:45 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-humanfriendly all 10.0-6 [70.8 kB] 96s Get:46 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-coloredlogs all 15.0.1-1 [38.2 kB] 96s Get:47 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-humanize all 4.12.1-1 [58.3 kB] 96s Get:48 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-importlib-metadata all 8.7.0-2 [21.0 kB] 96s Get:49 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-markdown all 3.8.2-2 [75.2 kB] 96s Get:50 http://ftpmaster.internal/ubuntu resolute/universe arm64 python-matplotlib-data all 3.10.7+dfsg1-1 [2930 kB] 96s Get:51 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-dateutil all 2.9.0-4 [80.3 kB] 96s Get:52 http://ftpmaster.internal/ubuntu resolute/main arm64 libopenjp2-7 arm64 2.5.3-2.1 [179 kB] 96s Get:53 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 python3-pil arm64 12.0.0-1ubuntu1 [486 kB] 96s Get:54 http://ftpmaster.internal/ubuntu resolute/main arm64 python3.14-tk arm64 3.14.0-4 [107 kB] 96s Get:55 http://ftpmaster.internal/ubuntu resolute/main arm64 python3.13-tk arm64 3.13.9-1 [106 kB] 96s Get:56 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-tk arm64 3.13.9-1 [8946 B] 96s Get:57 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 python3-pil.imagetk arm64 12.0.0-1ubuntu1 [9532 B] 97s Get:58 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-contourpy arm64 1.3.1-1build2 [253 kB] 97s Get:59 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-cycler all 0.12.1-2 [9850 B] 97s Get:60 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-brotli arm64 1.1.0-2build6 [343 kB] 97s Get:61 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-platformdirs all 4.3.7-1 [16.9 kB] 97s Get:62 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-fs all 2.4.16-7 [90.8 kB] 97s Get:63 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-lxml arm64 6.0.1-1build1 [2149 kB] 97s Get:64 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-lz4 arm64 4.4.4+dfsg-3 [27.6 kB] 97s Get:65 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-decorator all 5.2.1-2 [28.1 kB] 97s Get:66 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-scipy arm64 1.15.3-1ubuntu1 [18.7 MB] 99s Get:67 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-mpmath all 1.3.0-1 [425 kB] 99s Get:68 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-sympy all 1.13.3-5 [4229 kB] 99s Get:69 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-ufolib2 all 0.17.1+dfsg1-1 [33.5 kB] 99s Get:70 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-unicodedata2 arm64 16.0.0+ds-1build1 [398 kB] 99s Get:71 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-zopfli arm64 0.2.3.post1-1 [10.7 kB] 99s Get:72 http://ftpmaster.internal/ubuntu resolute/universe arm64 unicode-data all 16.0.0-1 [9513 kB] 100s Get:73 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-fonttools arm64 4.57.0-2build1 [1648 kB] 100s Get:74 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-kiwisolver arm64 1.4.7-3build2 [60.7 kB] 100s Get:75 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-packaging all 25.0-1 [52.8 kB] 100s Get:76 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-matplotlib arm64 3.10.7+dfsg1-1 [17.1 MB] 102s Get:77 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-pytz all 2025.2-4 [32.3 kB] 102s Get:78 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-tz all 2025.2-4 [1746 B] 102s Get:79 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-fastjsonschema all 2.21.1-1 [20.4 kB] 102s Get:80 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-traitlets all 5.14.3+really5.14.3-1 [71.5 kB] 102s Get:81 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-jupyter-core all 5.7.2-5 [28.1 kB] 102s Get:82 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-nbformat all 5.9.1-1 [41.2 kB] 102s Get:83 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-tenacity all 9.0.0-0ubuntu1 [17.0 kB] 102s Get:84 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-plotly all 5.20.0+dfsg-1 [2766 kB] 102s Get:85 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pyaml-env all 1.2.1-2 [9090 B] 102s Get:86 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-rich-click all 1.6.0-2 [18.0 kB] 102s Get:87 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-networkx all 3.2.1-4ubuntu1 [11.5 MB] 103s Get:88 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-colormath all 3.0.0-4 [36.6 kB] 103s Get:89 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-spectra all 0.1.0-1 [17.2 kB] 103s Get:90 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-lzstring all 1.0.4-3 [6262 B] 103s Get:91 http://ftpmaster.internal/ubuntu resolute/universe arm64 multiqc all 1.21+dfsg-2 [733 kB] 104s Fetched 89.3 MB in 9s (9550 kB/s) 104s Selecting previously unselected package python3-numpy-dev:arm64. 104s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83457 files and directories currently installed.) 104s Preparing to unpack .../00-python3-numpy-dev_1%3a2.2.4+ds-1ubuntu1_arm64.deb ... 104s Unpacking python3-numpy-dev:arm64 (1:2.2.4+ds-1ubuntu1) ... 104s Selecting previously unselected package libblas3:arm64. 104s Preparing to unpack .../01-libblas3_3.12.1-6build1_arm64.deb ... 104s Unpacking libblas3:arm64 (3.12.1-6build1) ... 104s Selecting previously unselected package libgfortran5:arm64. 104s Preparing to unpack .../02-libgfortran5_15.2.0-5ubuntu1_arm64.deb ... 104s Unpacking libgfortran5:arm64 (15.2.0-5ubuntu1) ... 105s Selecting previously unselected package liblapack3:arm64. 105s Preparing to unpack .../03-liblapack3_3.12.1-6build1_arm64.deb ... 105s Unpacking liblapack3:arm64 (3.12.1-6build1) ... 105s Selecting previously unselected package python3-numpy. 105s Preparing to unpack .../04-python3-numpy_1%3a2.2.4+ds-1ubuntu1_arm64.deb ... 105s Unpacking python3-numpy (1:2.2.4+ds-1ubuntu1) ... 105s Selecting previously unselected package libtcl8.6:arm64. 105s Preparing to unpack .../05-libtcl8.6_8.6.17+dfsg-1_arm64.deb ... 105s Unpacking libtcl8.6:arm64 (8.6.17+dfsg-1) ... 105s Selecting previously unselected package fonts-dejavu-mono. 105s Preparing to unpack .../06-fonts-dejavu-mono_2.37-8_all.deb ... 105s Unpacking fonts-dejavu-mono (2.37-8) ... 105s Selecting previously unselected package fonts-dejavu-core. 105s Preparing to unpack .../07-fonts-dejavu-core_2.37-8_all.deb ... 105s Unpacking fonts-dejavu-core (2.37-8) ... 105s Selecting previously unselected package fontconfig-config. 105s Preparing to unpack .../08-fontconfig-config_2.15.0-2.3ubuntu1_arm64.deb ... 106s Unpacking fontconfig-config (2.15.0-2.3ubuntu1) ... 106s Selecting previously unselected package libfontconfig1:arm64. 106s Preparing to unpack .../09-libfontconfig1_2.15.0-2.3ubuntu1_arm64.deb ... 106s Unpacking libfontconfig1:arm64 (2.15.0-2.3ubuntu1) ... 106s Selecting previously unselected package libxrender1:arm64. 106s Preparing to unpack .../10-libxrender1_1%3a0.9.12-1_arm64.deb ... 106s Unpacking libxrender1:arm64 (1:0.9.12-1) ... 106s Selecting previously unselected package libxft2:arm64. 106s Preparing to unpack .../11-libxft2_2.3.6-1build1_arm64.deb ... 106s Unpacking libxft2:arm64 (2.3.6-1build1) ... 106s Selecting previously unselected package x11-common. 106s Preparing to unpack .../12-x11-common_1%3a7.7+24ubuntu1_all.deb ... 106s Unpacking x11-common (1:7.7+24ubuntu1) ... 106s Selecting previously unselected package libxss1:arm64. 106s Preparing to unpack .../13-libxss1_1%3a1.2.3-1build3_arm64.deb ... 106s Unpacking libxss1:arm64 (1:1.2.3-1build3) ... 106s Selecting previously unselected package libtk8.6:arm64. 106s Preparing to unpack .../14-libtk8.6_8.6.17-1_arm64.deb ... 106s Unpacking libtk8.6:arm64 (8.6.17-1) ... 106s Selecting previously unselected package tk8.6-blt2.5. 106s Preparing to unpack .../15-tk8.6-blt2.5_2.5.3+dfsg-8_arm64.deb ... 106s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-8) ... 106s Selecting previously unselected package blt. 106s Preparing to unpack .../16-blt_2.5.3+dfsg-8_arm64.deb ... 106s Unpacking blt (2.5.3+dfsg-8) ... 106s Selecting previously unselected package fonts-glyphicons-halflings. 106s Preparing to unpack .../17-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-6_all.deb ... 106s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-6) ... 106s Selecting previously unselected package fonts-lyx. 106s Preparing to unpack .../18-fonts-lyx_2.4.4-1_all.deb ... 106s Unpacking fonts-lyx (2.4.4-1) ... 106s Selecting previously unselected package libdeflate0:arm64. 106s Preparing to unpack .../19-libdeflate0_1.23-2_arm64.deb ... 106s Unpacking libdeflate0:arm64 (1.23-2) ... 106s Selecting previously unselected package libgomp1:arm64. 106s Preparing to unpack .../20-libgomp1_15.2.0-5ubuntu1_arm64.deb ... 106s Unpacking libgomp1:arm64 (15.2.0-5ubuntu1) ... 106s Selecting previously unselected package libgraphite2-3:arm64. 106s Preparing to unpack .../21-libgraphite2-3_1.3.14-2ubuntu1_arm64.deb ... 106s Unpacking libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 106s Selecting previously unselected package libharfbuzz0b:arm64. 106s Preparing to unpack .../22-libharfbuzz0b_12.1.0-1_arm64.deb ... 106s Unpacking libharfbuzz0b:arm64 (12.1.0-1) ... 106s Selecting previously unselected package libimagequant0:arm64. 106s Preparing to unpack .../23-libimagequant0_2.18.0-1build1_arm64.deb ... 106s Unpacking libimagequant0:arm64 (2.18.0-1build1) ... 106s Selecting previously unselected package libjpeg-turbo8:arm64. 106s Preparing to unpack .../24-libjpeg-turbo8_2.1.5-4ubuntu2_arm64.deb ... 106s Unpacking libjpeg-turbo8:arm64 (2.1.5-4ubuntu2) ... 106s Selecting previously unselected package libjpeg8:arm64. 106s Preparing to unpack .../25-libjpeg8_8c-2ubuntu11_arm64.deb ... 106s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 106s Selecting previously unselected package libjs-bootstrap. 106s Preparing to unpack .../26-libjs-bootstrap_3.4.1+dfsg-6_all.deb ... 106s Unpacking libjs-bootstrap (3.4.1+dfsg-6) ... 106s Selecting previously unselected package libjs-jquery. 106s Preparing to unpack .../27-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 106s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 106s Selecting previously unselected package libjs-jquery-metadata. 106s Preparing to unpack .../28-libjs-jquery-metadata_12-4_all.deb ... 106s Unpacking libjs-jquery-metadata (12-4) ... 106s Selecting previously unselected package libjs-jquery-tablesorter. 106s Preparing to unpack .../29-libjs-jquery-tablesorter_1%3a2.31.3+dfsg1-4_all.deb ... 106s Unpacking libjs-jquery-tablesorter (1:2.31.3+dfsg1-4) ... 107s Selecting previously unselected package libjs-jquery-ui. 107s Preparing to unpack .../30-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 107s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 107s Selecting previously unselected package liblcms2-2:arm64. 107s Preparing to unpack .../31-liblcms2-2_2.16-2_arm64.deb ... 107s Unpacking liblcms2-2:arm64 (2.16-2) ... 107s Selecting previously unselected package liblerc4:arm64. 107s Preparing to unpack .../32-liblerc4_4.0.0+ds-5ubuntu1_arm64.deb ... 107s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 107s Selecting previously unselected package libqhull-r8.0:arm64. 107s Preparing to unpack .../33-libqhull-r8.0_2020.2-6build1_arm64.deb ... 107s Unpacking libqhull-r8.0:arm64 (2020.2-6build1) ... 107s Selecting previously unselected package libraqm0:arm64. 107s Preparing to unpack .../34-libraqm0_0.10.3-1_arm64.deb ... 107s Unpacking libraqm0:arm64 (0.10.3-1) ... 107s Selecting previously unselected package libsharpyuv0:arm64. 107s Preparing to unpack .../35-libsharpyuv0_1.5.0-0.1_arm64.deb ... 107s Unpacking libsharpyuv0:arm64 (1.5.0-0.1) ... 107s Selecting previously unselected package libjbig0:arm64. 107s Preparing to unpack .../36-libjbig0_2.1-6.1ubuntu2_arm64.deb ... 107s Unpacking libjbig0:arm64 (2.1-6.1ubuntu2) ... 107s Selecting previously unselected package libwebp7:arm64. 107s Preparing to unpack .../37-libwebp7_1.5.0-0.1_arm64.deb ... 107s Unpacking libwebp7:arm64 (1.5.0-0.1) ... 107s Selecting previously unselected package libtiff6:arm64. 107s Preparing to unpack .../38-libtiff6_4.7.0-3ubuntu3_arm64.deb ... 107s Unpacking libtiff6:arm64 (4.7.0-3ubuntu3) ... 107s Selecting previously unselected package libwebpdemux2:arm64. 107s Preparing to unpack .../39-libwebpdemux2_1.5.0-0.1_arm64.deb ... 107s Unpacking libwebpdemux2:arm64 (1.5.0-0.1) ... 107s Selecting previously unselected package libwebpmux3:arm64. 107s Preparing to unpack .../40-libwebpmux3_1.5.0-0.1_arm64.deb ... 107s Unpacking libwebpmux3:arm64 (1.5.0-0.1) ... 107s Selecting previously unselected package libxslt1.1:arm64. 107s Preparing to unpack .../41-libxslt1.1_1.1.43-0.3_arm64.deb ... 107s Unpacking libxslt1.1:arm64 (1.1.43-0.3) ... 107s Selecting previously unselected package libzopfli1. 107s Preparing to unpack .../42-libzopfli1_1.0.3-3_arm64.deb ... 107s Unpacking libzopfli1 (1.0.3-3) ... 107s Selecting previously unselected package python3-click. 107s Preparing to unpack .../43-python3-click_8.2.0+0.really.8.1.8-1_all.deb ... 107s Unpacking python3-click (8.2.0+0.really.8.1.8-1) ... 107s Selecting previously unselected package python3-humanfriendly. 107s Preparing to unpack .../44-python3-humanfriendly_10.0-6_all.deb ... 107s Unpacking python3-humanfriendly (10.0-6) ... 107s Selecting previously unselected package python3-coloredlogs. 107s Preparing to unpack .../45-python3-coloredlogs_15.0.1-1_all.deb ... 107s Unpacking python3-coloredlogs (15.0.1-1) ... 107s Selecting previously unselected package python3-humanize. 107s Preparing to unpack .../46-python3-humanize_4.12.1-1_all.deb ... 107s Unpacking python3-humanize (4.12.1-1) ... 107s Selecting previously unselected package python3-importlib-metadata. 107s Preparing to unpack .../47-python3-importlib-metadata_8.7.0-2_all.deb ... 107s Unpacking python3-importlib-metadata (8.7.0-2) ... 107s Selecting previously unselected package python3-markdown. 107s Preparing to unpack .../48-python3-markdown_3.8.2-2_all.deb ... 107s Unpacking python3-markdown (3.8.2-2) ... 107s Selecting previously unselected package python-matplotlib-data. 107s Preparing to unpack .../49-python-matplotlib-data_3.10.7+dfsg1-1_all.deb ... 107s Unpacking python-matplotlib-data (3.10.7+dfsg1-1) ... 108s Selecting previously unselected package python3-dateutil. 108s Preparing to unpack .../50-python3-dateutil_2.9.0-4_all.deb ... 108s Unpacking python3-dateutil (2.9.0-4) ... 108s Selecting previously unselected package libopenjp2-7:arm64. 108s Preparing to unpack .../51-libopenjp2-7_2.5.3-2.1_arm64.deb ... 108s Unpacking libopenjp2-7:arm64 (2.5.3-2.1) ... 108s Selecting previously unselected package python3-pil:arm64. 108s Preparing to unpack .../52-python3-pil_12.0.0-1ubuntu1_arm64.deb ... 108s Unpacking python3-pil:arm64 (12.0.0-1ubuntu1) ... 108s Selecting previously unselected package python3.14-tk. 108s Preparing to unpack .../53-python3.14-tk_3.14.0-4_arm64.deb ... 108s Unpacking python3.14-tk (3.14.0-4) ... 108s Selecting previously unselected package python3.13-tk. 108s Preparing to unpack .../54-python3.13-tk_3.13.9-1_arm64.deb ... 108s Unpacking python3.13-tk (3.13.9-1) ... 108s Selecting previously unselected package python3-tk:arm64. 108s Preparing to unpack .../55-python3-tk_3.13.9-1_arm64.deb ... 108s Unpacking python3-tk:arm64 (3.13.9-1) ... 108s Selecting previously unselected package python3-pil.imagetk:arm64. 108s Preparing to unpack .../56-python3-pil.imagetk_12.0.0-1ubuntu1_arm64.deb ... 108s Unpacking python3-pil.imagetk:arm64 (12.0.0-1ubuntu1) ... 108s Selecting previously unselected package python3-contourpy. 108s Preparing to unpack .../57-python3-contourpy_1.3.1-1build2_arm64.deb ... 108s Unpacking python3-contourpy (1.3.1-1build2) ... 108s Selecting previously unselected package python3-cycler. 108s Preparing to unpack .../58-python3-cycler_0.12.1-2_all.deb ... 108s Unpacking python3-cycler (0.12.1-2) ... 108s Selecting previously unselected package python3-brotli. 108s Preparing to unpack .../59-python3-brotli_1.1.0-2build6_arm64.deb ... 108s Unpacking python3-brotli (1.1.0-2build6) ... 108s Selecting previously unselected package python3-platformdirs. 108s Preparing to unpack .../60-python3-platformdirs_4.3.7-1_all.deb ... 108s Unpacking python3-platformdirs (4.3.7-1) ... 108s Selecting previously unselected package python3-fs. 108s Preparing to unpack .../61-python3-fs_2.4.16-7_all.deb ... 108s Unpacking python3-fs (2.4.16-7) ... 108s Selecting previously unselected package python3-lxml:arm64. 108s Preparing to unpack .../62-python3-lxml_6.0.1-1build1_arm64.deb ... 108s Unpacking python3-lxml:arm64 (6.0.1-1build1) ... 108s Selecting previously unselected package python3-lz4. 108s Preparing to unpack .../63-python3-lz4_4.4.4+dfsg-3_arm64.deb ... 108s Unpacking python3-lz4 (4.4.4+dfsg-3) ... 108s Selecting previously unselected package python3-decorator. 108s Preparing to unpack .../64-python3-decorator_5.2.1-2_all.deb ... 108s Unpacking python3-decorator (5.2.1-2) ... 108s Selecting previously unselected package python3-scipy. 108s Preparing to unpack .../65-python3-scipy_1.15.3-1ubuntu1_arm64.deb ... 108s Unpacking python3-scipy (1.15.3-1ubuntu1) ... 109s Selecting previously unselected package python3-mpmath. 109s Preparing to unpack .../66-python3-mpmath_1.3.0-1_all.deb ... 109s Unpacking python3-mpmath (1.3.0-1) ... 109s Selecting previously unselected package python3-sympy. 109s Preparing to unpack .../67-python3-sympy_1.13.3-5_all.deb ... 109s Unpacking python3-sympy (1.13.3-5) ... 109s Selecting previously unselected package python3-ufolib2. 109s Preparing to unpack .../68-python3-ufolib2_0.17.1+dfsg1-1_all.deb ... 109s Unpacking python3-ufolib2 (0.17.1+dfsg1-1) ... 109s Selecting previously unselected package python3-unicodedata2. 109s Preparing to unpack .../69-python3-unicodedata2_16.0.0+ds-1build1_arm64.deb ... 109s Unpacking python3-unicodedata2 (16.0.0+ds-1build1) ... 109s Selecting previously unselected package python3-zopfli. 109s Preparing to unpack .../70-python3-zopfli_0.2.3.post1-1_arm64.deb ... 109s Unpacking python3-zopfli (0.2.3.post1-1) ... 109s Selecting previously unselected package unicode-data. 109s Preparing to unpack .../71-unicode-data_16.0.0-1_all.deb ... 109s Unpacking unicode-data (16.0.0-1) ... 110s Selecting previously unselected package python3-fonttools. 110s Preparing to unpack .../72-python3-fonttools_4.57.0-2build1_arm64.deb ... 110s Unpacking python3-fonttools (4.57.0-2build1) ... 110s Selecting previously unselected package python3-kiwisolver. 110s Preparing to unpack .../73-python3-kiwisolver_1.4.7-3build2_arm64.deb ... 110s Unpacking python3-kiwisolver (1.4.7-3build2) ... 110s Selecting previously unselected package python3-packaging. 110s Preparing to unpack .../74-python3-packaging_25.0-1_all.deb ... 110s Unpacking python3-packaging (25.0-1) ... 110s Selecting previously unselected package python3-matplotlib. 110s Preparing to unpack .../75-python3-matplotlib_3.10.7+dfsg1-1_arm64.deb ... 110s Unpacking python3-matplotlib (3.10.7+dfsg1-1) ... 110s Selecting previously unselected package python3-pytz. 110s Preparing to unpack .../76-python3-pytz_2025.2-4_all.deb ... 110s Unpacking python3-pytz (2025.2-4) ... 110s Selecting previously unselected package python3-tz. 110s Preparing to unpack .../77-python3-tz_2025.2-4_all.deb ... 110s Unpacking python3-tz (2025.2-4) ... 110s Selecting previously unselected package python3-fastjsonschema. 110s Preparing to unpack .../78-python3-fastjsonschema_2.21.1-1_all.deb ... 110s Unpacking python3-fastjsonschema (2.21.1-1) ... 110s Selecting previously unselected package python3-traitlets. 110s Preparing to unpack .../79-python3-traitlets_5.14.3+really5.14.3-1_all.deb ... 110s Unpacking python3-traitlets (5.14.3+really5.14.3-1) ... 110s Selecting previously unselected package python3-jupyter-core. 110s Preparing to unpack .../80-python3-jupyter-core_5.7.2-5_all.deb ... 110s Unpacking python3-jupyter-core (5.7.2-5) ... 110s Selecting previously unselected package python3-nbformat. 110s Preparing to unpack .../81-python3-nbformat_5.9.1-1_all.deb ... 110s Unpacking python3-nbformat (5.9.1-1) ... 111s Selecting previously unselected package python3-tenacity. 111s Preparing to unpack .../82-python3-tenacity_9.0.0-0ubuntu1_all.deb ... 111s Unpacking python3-tenacity (9.0.0-0ubuntu1) ... 111s Selecting previously unselected package python3-plotly. 111s Preparing to unpack .../83-python3-plotly_5.20.0+dfsg-1_all.deb ... 111s Unpacking python3-plotly (5.20.0+dfsg-1) ... 112s Selecting previously unselected package python3-pyaml-env. 112s Preparing to unpack .../84-python3-pyaml-env_1.2.1-2_all.deb ... 112s Unpacking python3-pyaml-env (1.2.1-2) ... 112s Selecting previously unselected package python3-rich-click. 112s Preparing to unpack .../85-python3-rich-click_1.6.0-2_all.deb ... 112s Unpacking python3-rich-click (1.6.0-2) ... 112s Selecting previously unselected package python3-networkx. 112s Preparing to unpack .../86-python3-networkx_3.2.1-4ubuntu1_all.deb ... 112s Unpacking python3-networkx (3.2.1-4ubuntu1) ... 112s Selecting previously unselected package python3-colormath. 112s Preparing to unpack .../87-python3-colormath_3.0.0-4_all.deb ... 112s Unpacking python3-colormath (3.0.0-4) ... 112s Selecting previously unselected package python3-spectra. 112s Preparing to unpack .../88-python3-spectra_0.1.0-1_all.deb ... 112s Unpacking python3-spectra (0.1.0-1) ... 112s Selecting previously unselected package python3-lzstring. 112s Preparing to unpack .../89-python3-lzstring_1.0.4-3_all.deb ... 112s Unpacking python3-lzstring (1.0.4-3) ... 112s Selecting previously unselected package multiqc. 112s Preparing to unpack .../90-multiqc_1.21+dfsg-2_all.deb ... 112s Unpacking multiqc (1.21+dfsg-2) ... 113s Setting up libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 113s Setting up liblcms2-2:arm64 (2.16-2) ... 113s Setting up libsharpyuv0:arm64 (1.5.0-0.1) ... 113s Setting up liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 113s Setting up python3-importlib-metadata (8.7.0-2) ... 113s Setting up libxrender1:arm64 (1:0.9.12-1) ... 113s Setting up python3-lz4 (4.4.4+dfsg-3) ... 113s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-6) ... 113s Setting up python3-unicodedata2 (16.0.0+ds-1build1) ... 113s Setting up fonts-lyx (2.4.4-1) ... 113s Setting up python3-tenacity (9.0.0-0ubuntu1) ... 113s Setting up x11-common (1:7.7+24ubuntu1) ... 113s Setting up libdeflate0:arm64 (1.23-2) ... 113s Setting up libqhull-r8.0:arm64 (2020.2-6build1) ... 113s Setting up python3-pytz (2025.2-4) ... 114s Setting up libgomp1:arm64 (15.2.0-5ubuntu1) ... 114s Setting up python3-click (8.2.0+0.really.8.1.8-1) ... 114s Setting up python3-networkx (3.2.1-4ubuntu1) ... 115s Setting up libjbig0:arm64 (2.1-6.1ubuntu2) ... 115s Setting up python3-platformdirs (4.3.7-1) ... 116s Setting up python3-tz (2025.2-4) ... 116s Setting up python3-fs (2.4.16-7) ... 116s Setting up unicode-data (16.0.0-1) ... 116s Setting up python3-decorator (5.2.1-2) ... 116s Setting up libblas3:arm64 (3.12.1-6build1) ... 116s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 116s Setting up python3-pyaml-env (1.2.1-2) ... 117s /usr/lib/python3/dist-packages/pyaml_env/parse_config.py:58: SyntaxWarning: invalid escape sequence '\w' 117s type_tag_pattern = re.compile(f'({type_tag}\w+\s)') 117s Setting up python3-packaging (25.0-1) ... 117s Setting up libzopfli1 (1.0.3-3) ... 117s Setting up python3-humanfriendly (10.0-6) ... 117s Setting up python3-brotli (1.1.0-2build6) ... 117s Setting up python3-cycler (0.12.1-2) ... 117s Setting up libimagequant0:arm64 (2.18.0-1build1) ... 117s Setting up fonts-dejavu-mono (2.37-8) ... 117s Setting up python3-kiwisolver (1.4.7-3build2) ... 117s Setting up python3-numpy-dev:arm64 (1:2.2.4+ds-1ubuntu1) ... 117s Setting up python3-markdown (3.8.2-2) ... 118s Setting up libtcl8.6:arm64 (8.6.17+dfsg-1) ... 118s Setting up fonts-dejavu-core (2.37-8) ... 118s Setting up libjpeg-turbo8:arm64 (2.1.5-4ubuntu2) ... 118s Setting up libgfortran5:arm64 (15.2.0-5ubuntu1) ... 118s Setting up libwebp7:arm64 (1.5.0-0.1) ... 118s Setting up python3-rich-click (1.6.0-2) ... 118s Setting up python3-fastjsonschema (2.21.1-1) ... 118s Setting up python3-traitlets (5.14.3+really5.14.3-1) ... 118s Setting up libxslt1.1:arm64 (1.1.43-0.3) ... 118s Setting up libopenjp2-7:arm64 (2.5.3-2.1) ... 118s Setting up libharfbuzz0b:arm64 (12.1.0-1) ... 118s Setting up python3-dateutil (2.9.0-4) ... 118s Setting up libxss1:arm64 (1:1.2.3-1build3) ... 118s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 118s Setting up python3-mpmath (1.3.0-1) ... 119s Setting up python3-lzstring (1.0.4-3) ... 119s Setting up python3-humanize (4.12.1-1) ... 119s Setting up python-matplotlib-data (3.10.7+dfsg1-1) ... 119s Setting up libwebpmux3:arm64 (1.5.0-0.1) ... 119s Setting up python3-coloredlogs (15.0.1-1) ... 119s Setting up python3-jupyter-core (5.7.2-5) ... 120s Setting up libjs-bootstrap (3.4.1+dfsg-6) ... 120s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 120s Setting up python3-sympy (1.13.3-5) ... 127s Setting up liblapack3:arm64 (3.12.1-6build1) ... 127s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 127s Setting up fontconfig-config (2.15.0-2.3ubuntu1) ... 127s Setting up libwebpdemux2:arm64 (1.5.0-0.1) ... 127s Setting up python3-nbformat (5.9.1-1) ... 127s Setting up python3-zopfli (0.2.3.post1-1) ... 127s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 127s Setting up libjs-jquery-metadata (12-4) ... 127s Setting up libraqm0:arm64 (0.10.3-1) ... 127s Setting up python3-plotly (5.20.0+dfsg-1) ... 134s Setting up python3-numpy (1:2.2.4+ds-1ubuntu1) ... 136s Setting up python3-colormath (3.0.0-4) ... 136s /usr/lib/python3/dist-packages/colormath/chromatic_adaptation.py:85: SyntaxWarning: invalid escape sequence '\*' 136s logger.debug(" \* Applying adaptation matrix: %s", adaptation) 136s /usr/lib/python3/dist-packages/colormath/color_appearance_models.py:692: SyntaxWarning: invalid escape sequence '\s' 136s :param sigma: Relative luminance parameter :math:`\sigma`. For average surround set :math:`\sigma=1/2.3`, 136s /usr/lib/python3/dist-packages/colormath/color_appearance_models.py:798: SyntaxWarning: invalid escape sequence '\s' 136s :param sigma: :math:`\sigma` 136s /usr/lib/python3/dist-packages/colormath/color_conversions.py:40: SyntaxWarning: invalid escape sequence '\*' 136s logger.debug(" \* Applying RGB conversion matrix: %s->%s", 136s /usr/lib/python3/dist-packages/colormath/color_conversions.py:488: SyntaxWarning: invalid escape sequence '\-' 136s logger.debug(" \- Target RGB space: %s", target_rgb) 136s /usr/lib/python3/dist-packages/colormath/color_conversions.py:490: SyntaxWarning: invalid escape sequence '\-' 136s logger.debug(" \- Target native illuminant: %s", target_illum) 136s /usr/lib/python3/dist-packages/colormath/color_conversions.py:491: SyntaxWarning: invalid escape sequence '\-' 136s logger.debug(" \- XYZ color's illuminant: %s", cobj.illuminant) 136s /usr/lib/python3/dist-packages/colormath/color_conversions.py:497: SyntaxWarning: invalid escape sequence '\*' 136s logger.debug(" \* Applying transformation from %s to %s ", 136s /usr/lib/python3/dist-packages/colormath/color_conversions.py:503: SyntaxWarning: invalid escape sequence '\*' 136s logger.debug(" \* New values: %.3f, %.3f, %.3f", 136s /usr/lib/python3/dist-packages/colormath/color_objects.py:452: SyntaxWarning: invalid escape sequence '\-' 136s logger.debug(" \- Original illuminant: %s", self.illuminant) 136s /usr/lib/python3/dist-packages/colormath/color_objects.py:453: SyntaxWarning: invalid escape sequence '\-' 136s logger.debug(" \- Target illuminant: %s", target_illuminant) 136s /usr/lib/python3/dist-packages/colormath/color_objects.py:459: SyntaxWarning: invalid escape sequence '\*' 136s logger.debug(" \* Applying transformation from %s to %s ", 136s Setting up libjs-jquery-tablesorter (1:2.31.3+dfsg1-4) ... 136s Setting up python3-lxml:arm64 (6.0.1-1build1) ... 136s Setting up libtiff6:arm64 (4.7.0-3ubuntu3) ... 136s Setting up python3-contourpy (1.3.1-1build2) ... 136s Setting up libfontconfig1:arm64 (2.15.0-2.3ubuntu1) ... 136s Setting up libxft2:arm64 (2.3.6-1build1) ... 136s Setting up python3-scipy (1.15.3-1ubuntu1) ... 141s Setting up python3-spectra (0.1.0-1) ... 141s Setting up libtk8.6:arm64 (8.6.17-1) ... 141s Setting up python3.13-tk (3.13.9-1) ... 141s Setting up python3-pil:arm64 (12.0.0-1ubuntu1) ... 141s Setting up tk8.6-blt2.5 (2.5.3+dfsg-8) ... 141s Setting up python3.14-tk (3.14.0-4) ... 141s Setting up blt (2.5.3+dfsg-8) ... 141s Setting up python3-tk:arm64 (3.13.9-1) ... 141s Setting up python3-pil.imagetk:arm64 (12.0.0-1ubuntu1) ... 141s Setting up python3-fonttools (4.57.0-2build1) ... 142s Setting up python3-ufolib2 (0.17.1+dfsg1-1) ... 143s Setting up python3-matplotlib (3.10.7+dfsg1-1) ... 144s Setting up multiqc (1.21+dfsg-2) ... 145s Processing triggers for libc-bin (2.42-0ubuntu3) ... 145s Processing triggers for man-db (2.13.1-1) ... 147s autopkgtest [16:56:59]: test run-unit-test: [----------------------- 148s 148s /// MultiQC 🎃 | v1.21 148s 148s Usage: multiqc [OPTIONS] [ANALYSIS DIRECTORY] 148s 148s MultiQC aggregates results from bioinformatics analyses across many samples 148s into a single report. 148s It searches a given directory for analysis logs and compiles a HTML report. 148s It's a general use tool, perfect for summarising the output from numerous 148s bioinformatics tools. 148s To run, supply with one or more directory to scan for analysis results. For 148s example, to run in the current working directory, use 'multiqc .' 148s 148s ╭─ Main options ───────────────────────────────────────────────────────────────╮ 148s │ --force -f Overwrite any existing reports │ 148s │ --config -c Specific config file to load, after those in MultiQC │ 148s │ dir / home dir / working dir. │ 148s │ (PATH) │ 148s │ --cl-config Specify MultiQC config YAML on the command line │ 148s │ (TEXT) │ 148s │ --filename -n Report filename. Use 'stdout' to print to standard │ 148s │ out. │ 148s │ (TEXT) │ 148s │ --outdir -o Create report in the specified output directory. │ 148s │ (TEXT) │ 148s │ --ignore -x Ignore analysis files (GLOB EXPRESSION) │ 148s │ --ignore-samples Ignore sample names (GLOB EXPRESSION) │ 148s │ --ignore-symlinks Ignore symlinked directories and files │ 148s │ --file-list -l Supply a file containing a list of file paths to be │ 148s │ searched, one per row │ 148s ╰──────────────────────────────────────────────────────────────────────────────╯ 148s ╭─ Choosing modules to run ────────────────────────────────────────────────────╮ 148s │ --module -m Use only this module. Can specify multiple times. │ 148s │ (MODULE NAME) │ 148s │ --exclude -e Do not use this module. Can specify multiple times. │ 148s │ (MODULE NAME) │ 148s ╰──────────────────────────────────────────────────────────────────────────────╯ 148s ╭─ Sample handling ────────────────────────────────────────────────────────────╮ 148s │ --dirs -d Prepend directory to sample names │ 148s │ --dirs-depth -dd Prepend n directories to sample names. Negative number │ 148s │ to take from start of path. │ 148s │ (INTEGER) │ 148s │ --fullnames -s Do not clean the sample names (leave as full file │ 148s │ name) │ 148s │ --fn_as_s_name Use the log filename as the sample name │ 148s │ --replace-names TSV file to rename sample names during report │ 148s │ generation │ 148s │ (PATH) │ 148s ╰──────────────────────────────────────────────────────────────────────────────╯ 148s ╭─ Report customisation ───────────────────────────────────────────────────────╮ 148s │ --title -i Report title. Printed as page header, used for │ 148s │ filename if not otherwise specified. │ 148s │ (TEXT) │ 148s │ --comment -b Custom comment, will be printed at the top of the │ 148s │ report. │ 148s │ (TEXT) │ 148s │ --template -t Report template to use. │ 148s │ (default|gathered|geo|highcharts|sections|simple) │ 148s │ --sample-names TSV file containing alternative sample names for │ 148s │ renaming buttons in the report │ 148s │ (PATH) │ 148s │ --sample-filters TSV file containing show/hide patterns for the report │ 148s │ (PATH) │ 148s │ --custom-css-file Custom CSS file to add to the final report (PATH) │ 148s ╰──────────────────────────────────────────────────────────────────────────────╯ 148s ╭─ Output files ───────────────────────────────────────────────────────────────╮ 148s │ --flat -fp Use only flat plots (static images) │ 148s │ --interactive -ip Use only interactive plots (in-browser Javascript) │ 148s │ --export -p Export plots as static images in addition to the report │ 148s │ --data-dir Force the parsed data directory to be created. │ 148s │ --no-data-dir Prevent the parsed data directory from being created. │ 148s │ --data-format -k Output parsed data in a different format. │ 148s │ (tsv|csv|json|yaml) │ 148s │ --zip-data-dir -z Compress the data directory. │ 148s │ --no-report Do not generate a report, only export data and plots │ 148s │ --pdf Creates PDF report with the 'simple' template. Requires │ 148s │ Pandoc to be installed. │ 148s ╰──────────────────────────────────────────────────────────────────────────────╯ 148s ╭─ MultiQC behaviour ──────────────────────────────────────────────────────────╮ 148s │ --verbose -v Increase output verbosity. (INTEGER RANGE) │ 148s │ --quiet -q Only show log warnings │ 148s │ --strict Don't catch exceptions, run additional code checks │ 148s │ to help development. │ 148s │ --development,--dev Development mode. Do not compress and minimise JS, │ 148s │ export uncompressed plot data │ 148s │ --require-logs Require all explicitly requested modules to have │ 148s │ log files. If not, MultiQC will exit with an error. │ 148s │ --profile-runtime Add analysis of how long MultiQC takes to run to │ 148s │ the report │ 148s │ --no-megaqc-upload Don't upload generated report to MegaQC, even if │ 148s │ MegaQC options are found │ 148s │ --no-ansi Disable coloured log output │ 148s │ --version Show the version and exit. │ 148s │ --help -h Show this message and exit. │ 148s ╰──────────────────────────────────────────────────────────────────────────────╯ 148s 148s See http://multiqc.info for more details. 148s 148s FIXME: The test data should be delivered in a separate binary package once freeze is over 149s 149s /// MultiQC 🔍 | v1.21 149s 150s | multiqc | MultiQC Version v1.32 now available! 150s | multiqc | Search path : /tmp/autopkgtest.75guEB/autopkgtest_tmp/data 150s | searching | ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 100% 121/121 150s | feature_counts | Found 8 reports 150s | star | Found 8 reports 150s | cutadapt | Found 16 reports 150s | fastqc | Found 32 reports 151s | multiqc | Report : multiqc_report.html 151s | multiqc | Data : multiqc_data 151s | multiqc | Could not include file 'assets/js/packages/jszip.min.js': [Errno 2] No such file or directory: '/tmp/tmp20h61zol/assets/js/packages/jszip.min.js' 151s | multiqc | Could not include file 'assets/js/packages/plotly-2.27.0.min.js': [Errno 2] No such file or directory: '/tmp/tmp20h61zol/assets/js/packages/plotly-2.27.0.min.js' 151s | multiqc | MultiQC complete 151s -e 151s PASS 151s 151s autopkgtest [16:57:03]: test run-unit-test: -----------------------] 152s run-unit-test PASS 152s autopkgtest [16:57:04]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 152s autopkgtest [16:57:04]: @@@@@@@@@@@@@@@@@@@@ summary 152s run-unit-test PASS