0s autopkgtest [04:14:47]: starting date and time: 2026-02-05 04:14:47+0000 0s autopkgtest [04:14:47]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [04:14:47]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.g3q3w01j/out --timeout-copy=6000 --needs-internet=try --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc,src:chiark-tcl --apt-upgrade mothur --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=glibc/2.42-2ubuntu5 chiark-tcl/1.3.7build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-arm64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@sto01-arm64-19.secgroup --name adt-resolute-arm64-mothur-20260205-041447-juju-7f2275-prod-proposed-migration-environment-2-a33dc4b3-668c-4eea-b7c8-7fdfc2ac0c35 --image adt/ubuntu-resolute-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-autopkgtest-workers-arm64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 4s Creating nova instance adt-resolute-arm64-mothur-20260205-041447-juju-7f2275-prod-proposed-migration-environment-2-a33dc4b3-668c-4eea-b7c8-7fdfc2ac0c35 from image adt/ubuntu-resolute-arm64-server-20260204.img (UUID f58d981d-b271-4157-b9b1-fd704695563c)... 101s autopkgtest [04:16:28]: testbed dpkg architecture: arm64 101s autopkgtest [04:16:28]: testbed apt version: 3.1.14 102s autopkgtest [04:16:29]: @@@@@@@@@@@@@@@@@@@@ test bed setup 102s autopkgtest [04:16:29]: testbed release detected to be: None 103s autopkgtest [04:16:30]: updating testbed package index (apt update) 103s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 103s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 103s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 103s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 103s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [5260 B] 103s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [35.4 kB] 103s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1719 kB] 104s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [227 kB] 104s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 Packages [265 kB] 104s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 c-n-f Metadata [7328 B] 104s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 Packages [52.9 kB] 104s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 c-n-f Metadata [328 B] 104s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 Packages [1481 kB] 104s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 c-n-f Metadata [40.2 kB] 104s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 Packages [26.0 kB] 104s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 c-n-f Metadata [776 B] 108s Fetched 3984 kB in 1s (2672 kB/s) 109s Reading package lists... 110s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 111s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 111s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 111s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 111s Reading package lists... 111s Reading package lists... 112s Building dependency tree... 112s Reading state information... 112s Calculating upgrade... 112s The following packages will be upgraded: 112s libc-bin libc-gconv-modules-extra libc6 locales pollinate python3-linkify-it 112s python3-referencing sed 112s 8 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 112s Need to get 8110 kB of archives. 112s After this operation, 0 B of additional disk space will be used. 112s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 sed arm64 4.9-2build3 [193 kB] 112s Get:2 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 libc-gconv-modules-extra arm64 2.42-2ubuntu5 [1413 kB] 113s Get:3 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 libc6 arm64 2.42-2ubuntu5 [1594 kB] 113s Get:4 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 libc-bin arm64 2.42-2ubuntu5 [599 kB] 113s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 locales all 2.42-2ubuntu5 [4255 kB] 113s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-linkify-it all 2.0.3-1ubuntu3 [19.4 kB] 113s Get:7 http://ftpmaster.internal/ubuntu resolute/main arm64 pollinate all 4.33-4ubuntu5 [14.0 kB] 113s Get:8 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-referencing all 0.36.2-1ubuntu2 [22.2 kB] 114s dpkg-preconfigure: unable to re-open stdin: No such file or directory 114s Fetched 8110 kB in 1s (9272 kB/s) 114s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 89360 files and directories currently installed.) 114s Preparing to unpack .../sed_4.9-2build3_arm64.deb ... 114s Unpacking sed (4.9-2build3) over (4.9-2build2) ... 114s Setting up sed (4.9-2build3) ... 114s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 89360 files and directories currently installed.) 114s Preparing to unpack .../libc-gconv-modules-extra_2.42-2ubuntu5_arm64.deb ... 114s Unpacking libc-gconv-modules-extra:arm64 (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 114s Setting up libc-gconv-modules-extra:arm64 (2.42-2ubuntu5) ... 114s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 89360 files and directories currently installed.) 114s Preparing to unpack .../libc6_2.42-2ubuntu5_arm64.deb ... 114s Unpacking libc6:arm64 (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 115s Setting up libc6:arm64 (2.42-2ubuntu5) ... 115s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 89360 files and directories currently installed.) 115s Preparing to unpack .../libc-bin_2.42-2ubuntu5_arm64.deb ... 115s Unpacking libc-bin (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 115s Setting up libc-bin (2.42-2ubuntu5) ... 115s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 89360 files and directories currently installed.) 115s Preparing to unpack .../locales_2.42-2ubuntu5_all.deb ... 115s Unpacking locales (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 115s Preparing to unpack .../python3-linkify-it_2.0.3-1ubuntu3_all.deb ... 115s Unpacking python3-linkify-it (2.0.3-1ubuntu3) over (2.0.3-1ubuntu2) ... 115s Preparing to unpack .../pollinate_4.33-4ubuntu5_all.deb ... 115s Unpacking pollinate (4.33-4ubuntu5) over (4.33-4ubuntu4) ... 115s Preparing to unpack .../python3-referencing_0.36.2-1ubuntu2_all.deb ... 116s Unpacking python3-referencing (0.36.2-1ubuntu2) over (0.36.2-1ubuntu1) ... 116s Setting up locales (2.42-2ubuntu5) ... 116s Generating locales (this might take a while)... 118s en_US.UTF-8... done 118s Generation complete. 118s Setting up pollinate (4.33-4ubuntu5) ... 129s Setting up python3-linkify-it (2.0.3-1ubuntu3) ... 129s Setting up python3-referencing (0.36.2-1ubuntu2) ... 129s Processing triggers for man-db (2.13.1-1) ... 130s Processing triggers for install-info (7.2-5) ... 130s Processing triggers for systemd (259-1ubuntu3) ... 131s autopkgtest [04:16:58]: upgrading testbed (apt dist-upgrade and autopurge) 131s Reading package lists... 131s Building dependency tree... 131s Reading state information... 132s Calculating upgrade... 132s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 132s Reading package lists... 132s Building dependency tree... 132s Reading state information... 133s Solving dependencies... 133s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 133s autopkgtest [04:17:00]: rebooting testbed after setup commands that affected boot 172s autopkgtest [04:17:39]: testbed running kernel: Linux 6.18.0-9-generic #9-Ubuntu SMP PREEMPT_DYNAMIC Mon Jan 12 16:41:39 UTC 2026 176s autopkgtest [04:17:43]: @@@@@@@@@@@@@@@@@@@@ apt-source mothur 181s Get:1 http://ftpmaster.internal/ubuntu resolute/universe mothur 1.48.1-1build1 (dsc) [2074 B] 181s Get:2 http://ftpmaster.internal/ubuntu resolute/universe mothur 1.48.1-1build1 (tar) [1654 kB] 181s Get:3 http://ftpmaster.internal/ubuntu resolute/universe mothur 1.48.1-1build1 (diff) [21.7 kB] 182s gpgv: Signature made Mon Jan 26 19:31:04 2026 UTC 182s gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2 182s gpgv: Can't check signature: No public key 182s dpkg-source: warning: cannot verify inline signature for ./mothur_1.48.1-1build1.dsc: no acceptable signature found 182s autopkgtest [04:17:49]: testing package mothur version 1.48.1-1build1 182s autopkgtest [04:17:49]: build not needed 183s autopkgtest [04:17:50]: test run-unit-test: preparing testbed 184s Reading package lists... 184s Building dependency tree... 184s Reading state information... 184s Solving dependencies... 184s The following NEW packages will be installed: 184s mothur 185s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 185s Need to get 4239 kB of archives. 185s After this operation, 11.8 MB of additional disk space will be used. 185s Get:1 http://ftpmaster.internal/ubuntu resolute/universe arm64 mothur arm64 1.48.1-1build1 [4239 kB] 190s Fetched 4239 kB in 5s (868 kB/s) 190s Selecting previously unselected package mothur. 190s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 89360 files and directories currently installed.) 190s Preparing to unpack .../mothur_1.48.1-1build1_arm64.deb ... 190s Unpacking mothur (1.48.1-1build1) ... 190s Setting up mothur (1.48.1-1build1) ... 190s Processing triggers for man-db (2.13.1-1) ... 191s autopkgtest [04:17:58]: test run-unit-test: [----------------------- 192s Linux version 192s 192s Using ReadLine 192s mothur v.1.48.1 192s Last updated: 5/15/24 192s by 192s Patrick D. Schloss 192s 192s Department of Microbiology & Immunology 192s 192s University of Michigan 192s http://www.mothur.org 192s 192s When using, please cite: 192s Schloss, P.D., et al., Introducing mothur: Open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol, 2009. 75(23):7537-41. 192s 192s Distributed under the GNU General Public License 192s 192s Type 'help()' for information on the commands that are available 192s 192s For questions and analysis support, please visit our forum at https://forum.mothur.org 192s 192s Type 'quit()' to exit program 192s 192s [NOTE]: Setting random seed to 19760620. 192s 192s Batch Mode 192s 192s 192s 192s mothur > unique.seqs(fasta=HA.fasta) 192s 599 259 192s 192s Output File Names: 192s HA.unique.fasta 192s HA.count_table 192s 192s 192s mothur > dist.seqs(fasta=HA.unique.fasta, countends=F, cutoff=0.01) 192s 192s Using 2 processors. 192s 192s Sequence Time Num_Dists_Below_Cutoff 192s 0 0 0 192s 200 0 3443 192s 100 0 5025 192s 258 0 15965 192s 182 0 16617 192s 192s It took 0 secs to find distances for 259 sequences. 32582 distances below cutoff 0.01. 192s 192s 192s Output File Names: 192s HA.unique.dist 192s 192s 192s mothur > cluster(method=furthest, column=HA.unique.dist, count=current, cutoff=0.01, precision=1000) 192s Using HA.count_table as input file for the count parameter. 192s 192s Using 2 processors. 192s unique 154 211 18 2 6 0 4 2 0 2 0 0 0 1 0 0 0 0 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 192s 0.001 155 161 28 5 3 4 2 4 0 0 1 0 1 0 1 0 0 0 0 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 192s 0.002 206 56 9 8 2 0 4 2 2 0 0 0 0 0 2 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 192s 0.003 236 26 4 2 1 1 0 2 2 1 0 0 0 0 1 1 0 0 0 0 0 0 1 1 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 192s 0.004 270 15 3 0 1 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 192s 0.005 272 7 2 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 192s 0.006 274 5 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 192s 0.007 274 5 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 192s 0.008 552 3 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 192s 0.009 592 3 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 192s It took 0 seconds to cluster 192s 192s Output File Names: 192s HA.unique.fn.list 192s 192s 192s mothur > summary.single(list=HA.unique.fn.list, calc=nseqs-sobs-chao, label=unique-0.001-0.003-0.005-0.008) 192s unique 192s 0.001 192s 0.003 192s 0.005 192s 0.008 192s 192s Output File Names: 192s HA.unique.fn.summary 192s 192s 192s mothur > heatmap.bin(scale=linear, label=unique-0.001-0.003) 192s Using HA.unique.fn.list as input file for the list parameter. 192s unique 192s 0.001 192s 0.003 192s 192s Output File Names: 192s HA.unique.fn.unique.heatmap.bin.svg 192s HA.unique.fn.0.001.heatmap.bin.svg 192s HA.unique.fn.0.003.heatmap.bin.svg 192s HA.unique.fn.0.004.heatmap.bin.svg 192s HA.unique.fn.0.005.heatmap.bin.svg 192s HA.unique.fn.0.006.heatmap.bin.svg 192s HA.unique.fn.0.007.heatmap.bin.svg 192s HA.unique.fn.0.008.heatmap.bin.svg 192s HA.unique.fn.0.009.heatmap.bin.svg 192s 192s 192s mothur > rarefaction.single(calc=sobs-chao, label=unique-0.001-0.003, freq=10) 192s Using HA.unique.fn.list as input file for the list parameter. 192s 192s Using 2 processors. 192s unique 192s 0.001 192s 0.003 192s 192s It took 1 secs to run rarefaction.single. 192s 192s Output File Names: 192s HA.unique.fn.rarefaction 192s HA.unique.fn.r_chao 192s 192s 192s mothur > quit() 192s 192s 192s It took 1 seconds to run 7 commands from test.batch batch file. 192s 192s Logfile : mothur.1770265078.logfile 192s 192s autopkgtest [04:17:59]: test run-unit-test: -----------------------] 193s autopkgtest [04:18:00]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 193s run-unit-test PASS 193s autopkgtest [04:18:00]: @@@@@@@@@@@@@@@@@@@@ summary 193s run-unit-test PASS