0s autopkgtest [12:12:51]: starting date and time: 2025-11-01 12:12:51+0000 0s autopkgtest [12:12:51]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [12:12:51]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.1vz4s8nq/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:scipy --apt-upgrade mdanalysis --timeout-short=300 --timeout-copy=20000 --timeout-test=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=scipy/1.16.3-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-big --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-8.secgroup --name adt-resolute-arm64-mdanalysis-20251101-121251-juju-7f2275-prod-proposed-migration-environment-2-380eac7e-e068-41e9-a910-489f8d95546b --image adt/ubuntu-resolute-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 4s Creating nova instance adt-resolute-arm64-mdanalysis-20251101-121251-juju-7f2275-prod-proposed-migration-environment-2-380eac7e-e068-41e9-a910-489f8d95546b from image adt/ubuntu-resolute-arm64-server-20251101.img (UUID 895f8d05-65a0-4cf8-81a2-1a04d79b538c)... 64s autopkgtest [12:13:55]: testbed dpkg architecture: arm64 64s autopkgtest [12:13:55]: testbed apt version: 3.1.11 64s autopkgtest [12:13:55]: @@@@@@@@@@@@@@@@@@@@ test bed setup 65s autopkgtest [12:13:56]: testbed release detected to be: None 65s autopkgtest [12:13:56]: updating testbed package index (apt update) 66s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [87.8 kB] 66s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 66s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 66s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 66s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [9848 B] 66s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [138 kB] 66s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [49.4 kB] 67s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [2242 kB] 68s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 Packages [206 kB] 68s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 c-n-f Metadata [4948 B] 68s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 Packages [107 kB] 68s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 c-n-f Metadata [324 B] 68s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 Packages [1619 kB] 69s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 c-n-f Metadata [48.3 kB] 69s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 Packages [34.8 kB] 69s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 c-n-f Metadata [1700 B] 70s Fetched 4550 kB in 3s (1437 kB/s) 71s Reading package lists... 72s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 72s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 72s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 72s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 73s Reading package lists... 73s Reading package lists... 73s Building dependency tree... 73s Reading state information... 73s Calculating upgrade... 74s The following packages will be upgraded: 74s gcc-15-base libatomic1 libgcc-s1 libstdc++6 publicsuffix 74s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 74s Need to get 1027 kB of archives. 74s After this operation, 14.3 kB of additional disk space will be used. 74s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 libatomic1 arm64 15.2.0-7ubuntu1 [11.2 kB] 74s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 libstdc++6 arm64 15.2.0-7ubuntu1 [760 kB] 74s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 gcc-15-base arm64 15.2.0-7ubuntu1 [58.4 kB] 75s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 libgcc-s1 arm64 15.2.0-7ubuntu1 [61.1 kB] 75s Get:5 http://ftpmaster.internal/ubuntu resolute/main arm64 publicsuffix all 20251016.1743-0.1 [136 kB] 75s dpkg-preconfigure: unable to re-open stdin: No such file or directory 75s Fetched 1027 kB in 1s (1191 kB/s) 76s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83460 files and directories currently installed.) 76s Preparing to unpack .../libatomic1_15.2.0-7ubuntu1_arm64.deb ... 76s Unpacking libatomic1:arm64 (15.2.0-7ubuntu1) over (15.2.0-5ubuntu1) ... 76s Preparing to unpack .../libstdc++6_15.2.0-7ubuntu1_arm64.deb ... 76s Unpacking libstdc++6:arm64 (15.2.0-7ubuntu1) over (15.2.0-5ubuntu1) ... 76s Preparing to unpack .../gcc-15-base_15.2.0-7ubuntu1_arm64.deb ... 76s Unpacking gcc-15-base:arm64 (15.2.0-7ubuntu1) over (15.2.0-5ubuntu1) ... 76s Setting up gcc-15-base:arm64 (15.2.0-7ubuntu1) ... 76s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83460 files and directories currently installed.) 76s Preparing to unpack .../libgcc-s1_15.2.0-7ubuntu1_arm64.deb ... 76s Unpacking libgcc-s1:arm64 (15.2.0-7ubuntu1) over (15.2.0-5ubuntu1) ... 76s Setting up libgcc-s1:arm64 (15.2.0-7ubuntu1) ... 76s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83460 files and directories currently installed.) 76s Preparing to unpack .../publicsuffix_20251016.1743-0.1_all.deb ... 76s Unpacking publicsuffix (20251016.1743-0.1) over (20250328.1952-0.1) ... 76s Setting up libatomic1:arm64 (15.2.0-7ubuntu1) ... 77s Setting up publicsuffix (20251016.1743-0.1) ... 77s Setting up libstdc++6:arm64 (15.2.0-7ubuntu1) ... 77s Processing triggers for libc-bin (2.42-0ubuntu3) ... 77s autopkgtest [12:14:08]: upgrading testbed (apt dist-upgrade and autopurge) 77s Reading package lists... 77s Building dependency tree... 77s Reading state information... 78s Calculating upgrade... 78s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 78s Reading package lists... 78s Building dependency tree... 78s Reading state information... 79s Solving dependencies... 79s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 82s autopkgtest [12:14:13]: testbed running kernel: Linux 6.17.0-5-generic #5-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 22 09:50:31 UTC 2025 82s autopkgtest [12:14:13]: @@@@@@@@@@@@@@@@@@@@ apt-source mdanalysis 92s Get:1 http://ftpmaster.internal/ubuntu resolute/universe mdanalysis 2.9.0-12 (dsc) [2945 B] 92s Get:2 http://ftpmaster.internal/ubuntu resolute/universe mdanalysis 2.9.0-12 (tar) [61.0 MB] 92s Get:3 http://ftpmaster.internal/ubuntu resolute/universe mdanalysis 2.9.0-12 (diff) [13.9 kB] 92s gpgv: Signature made Thu Jul 10 09:20:14 2025 UTC 92s gpgv: using RSA key 23C9A93E585819E9126D0A36573EF1E4BD5A01FA 92s gpgv: Can't check signature: No public key 92s dpkg-source: warning: cannot verify inline signature for ./mdanalysis_2.9.0-12.dsc: no acceptable signature found 93s autopkgtest [12:14:24]: testing package mdanalysis version 2.9.0-12 94s autopkgtest [12:14:25]: build not needed 98s autopkgtest [12:14:29]: test test-mdanalysis: preparing testbed 99s Reading package lists... 99s Building dependency tree... 99s Reading state information... 99s Solving dependencies... 99s The following NEW packages will be installed: 99s autoconf automake autopoint autotools-dev blt build-essential cpp cpp-15 99s cpp-15-aarch64-linux-gnu cpp-aarch64-linux-gnu cython3 debhelper debugedit 99s dh-autoreconf dh-python dh-strip-nondeterminism docutils-common dwz 99s fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 99s fonts-lato fonts-lyx fonts-mathjax fonts-urw-base35 g++ g++-15 99s g++-15-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-15 99s gcc-15-aarch64-linux-gnu gcc-aarch64-linux-gnu gettext intltool-debian 99s libaec0 libarchive-zip-perl libasan8 libblas3 libcairo2 libcc1-0 99s libdebhelper-perl libdeflate0 libexpat1-dev libfile-stripnondeterminism-perl 99s libfontconfig1 libfontenc1 libgcc-15-dev libgfortran5 libgomp1 99s libgraphite2-3 libharfbuzz0b libhdf5-310 libhdf5-hl-310 libhwasan0 99s libimagequant0 libisl23 libitm1 libjbig0 libjpeg-turbo8 libjpeg8 99s libjs-jquery libjs-mathjax libjs-sphinxdoc libjs-underscore libjson-perl 99s liblapack3 liblcms2-2 liblerc4 liblsan0 liblzf1 libmpc3 libnetcdf22 99s libopenjp2-7 libpixman-1-0 libpython3-all-dev libpython3-dev 99s libpython3.13-dev libqhull-r8.0 libraqm0 libsharpyuv0 libstdc++-15-dev 99s libsz2 libtcl8.6 libtiff6 libtk8.6 libtool libtsan2 libubsan1 libwebp7 99s libwebpdemux2 libwebpmux3 libxcb-render0 libxcb-shm0 libxft2 libxrender1 99s libxslt1.1 libxss1 libzopfli1 m4 po-debconf pybuild-plugin-pyproject 99s python-matplotlib-data python-mdanalysis-doc python3-alabaster python3-all 99s python3-all-dev python3-biopython python3-brotli python3-build python3-cairo 99s python3-cftime python3-charset-normalizer python3-citeproc python3-contourpy 99s python3-cycler python3-dateutil python3-decorator python3-defusedxml 99s python3-dev python3-docutils python3-duecredit python3-fasteners 99s python3-filelock python3-fonttools python3-freetype python3-fs 99s python3-griddataformats python3-gsd python3-h5py python3-h5py-serial 99s python3-hypothesis python3-imagesize python3-iniconfig python3-installer 99s python3-joblib python3-kiwisolver python3-latexcodec python3-looseversion 99s python3-lxml python3-lz4 python3-matplotlib python3-mda-xdrlib 99s python3-mdanalysis python3-mmtf python3-monotonic python3-mpmath 99s python3-mrcfile python3-msgpack python3-msmb-theme python3-netcdf4 99s python3-networkx python3-numpy python3-numpy-dev python3-packaging 99s python3-pandas python3-pandas-lib python3-pil python3-pil.imagetk 99s python3-platformdirs python3-pluggy python3-pybtex python3-pybtex-docutils 99s python3-pyproject-hooks python3-pytest python3-pytz python3-reportlab 99s python3-rlpycairo python3-roman python3-scipy python3-seaborn 99s python3-sklearn python3-sklearn-lib python3-snowballstemmer 99s python3-sortedcontainers python3-sphinx python3-sphinx-rtd-theme 99s python3-sphinx-sitemap python3-sphinxcontrib.bibtex 99s python3-sphinxcontrib.jquery python3-sympy python3-threadpoolctl python3-tk 99s python3-tqdm python3-ufolib2 python3-wheel python3-zopfli python3.13-dev 99s python3.13-tk python3.14-tk sgml-base sphinx-common sphinx-rtd-theme-common 99s tk8.6-blt2.5 unicode-data w3c-sgml-lib x11-common xfonts-encodings 99s xfonts-utils xml-core zlib1g-dev 100s 0 upgraded, 202 newly installed, 0 to remove and 0 not upgraded. 100s Need to get 225 MB of archives. 100s After this operation, 971 MB of additional disk space will be used. 100s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-lato all 2.015-1 [2781 kB] 101s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-numpy-dev arm64 1:2.2.4+ds-1ubuntu1 [146 kB] 101s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 libblas3 arm64 3.12.1-6build1 [186 kB] 101s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 libgfortran5 arm64 15.2.0-7ubuntu1 [450 kB] 101s Get:5 http://ftpmaster.internal/ubuntu resolute/main arm64 liblapack3 arm64 3.12.1-6build1 [2340 kB] 101s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-numpy arm64 1:2.2.4+ds-1ubuntu1 [3986 kB] 102s Get:7 http://ftpmaster.internal/ubuntu resolute/main arm64 m4 arm64 1.4.20-2 [213 kB] 102s Get:8 http://ftpmaster.internal/ubuntu resolute/main arm64 autoconf all 2.72-3.1ubuntu1 [384 kB] 102s Get:9 http://ftpmaster.internal/ubuntu resolute/main arm64 autotools-dev all 20240727.1 [43.4 kB] 102s Get:10 http://ftpmaster.internal/ubuntu resolute/main arm64 automake all 1:1.18.1-2 [581 kB] 102s Get:11 http://ftpmaster.internal/ubuntu resolute/main arm64 autopoint all 0.23.1-2build2 [619 kB] 102s Get:12 http://ftpmaster.internal/ubuntu resolute/main arm64 libtcl8.6 arm64 8.6.17+dfsg-1 [1024 kB] 102s Get:13 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 102s Get:14 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 102s Get:15 http://ftpmaster.internal/ubuntu resolute/main arm64 libfontenc1 arm64 1:1.1.8-1build1 [13.9 kB] 102s Get:16 http://ftpmaster.internal/ubuntu resolute/main arm64 x11-common all 1:7.7+24ubuntu1 [22.4 kB] 102s Get:17 http://ftpmaster.internal/ubuntu resolute/main arm64 xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] 103s Get:18 http://ftpmaster.internal/ubuntu resolute/main arm64 xfonts-utils arm64 1:7.7+7 [95.6 kB] 103s Get:19 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-urw-base35 all 20200910-8 [11.0 MB] 104s Get:20 http://ftpmaster.internal/ubuntu resolute/main arm64 fontconfig-config arm64 2.15.0-2.3ubuntu1 [38.1 kB] 104s Get:21 http://ftpmaster.internal/ubuntu resolute/main arm64 libfontconfig1 arm64 2.15.0-2.3ubuntu1 [144 kB] 104s Get:22 http://ftpmaster.internal/ubuntu resolute/main arm64 libxrender1 arm64 1:0.9.12-1 [19.5 kB] 104s Get:23 http://ftpmaster.internal/ubuntu resolute/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB] 104s Get:24 http://ftpmaster.internal/ubuntu resolute/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B] 104s Get:25 http://ftpmaster.internal/ubuntu resolute/main arm64 libtk8.6 arm64 8.6.17-1 [811 kB] 104s Get:26 http://ftpmaster.internal/ubuntu resolute/main arm64 tk8.6-blt2.5 arm64 2.5.3+dfsg-8 [624 kB] 104s Get:27 http://ftpmaster.internal/ubuntu resolute/main arm64 blt arm64 2.5.3+dfsg-8 [4824 B] 104s Get:28 http://ftpmaster.internal/ubuntu resolute/main arm64 libisl23 arm64 0.27-1 [676 kB] 104s Get:29 http://ftpmaster.internal/ubuntu resolute/main arm64 libmpc3 arm64 1.3.1-1build3 [58.9 kB] 104s Get:30 http://ftpmaster.internal/ubuntu resolute/main arm64 cpp-15-aarch64-linux-gnu arm64 15.2.0-7ubuntu1 [11.7 MB] 105s Get:31 http://ftpmaster.internal/ubuntu resolute/main arm64 cpp-15 arm64 15.2.0-7ubuntu1 [1026 B] 105s Get:32 http://ftpmaster.internal/ubuntu resolute/main arm64 cpp-aarch64-linux-gnu arm64 4:15.2.0-4ubuntu1 [5736 B] 105s Get:33 http://ftpmaster.internal/ubuntu resolute/main arm64 cpp arm64 4:15.2.0-4ubuntu1 [22.4 kB] 105s Get:34 http://ftpmaster.internal/ubuntu resolute/main arm64 libcc1-0 arm64 15.2.0-7ubuntu1 [49.0 kB] 105s Get:35 http://ftpmaster.internal/ubuntu resolute/main arm64 libgomp1 arm64 15.2.0-7ubuntu1 [147 kB] 105s Get:36 http://ftpmaster.internal/ubuntu resolute/main arm64 libitm1 arm64 15.2.0-7ubuntu1 [27.9 kB] 105s Get:37 http://ftpmaster.internal/ubuntu resolute/main arm64 libasan8 arm64 15.2.0-7ubuntu1 [2923 kB] 105s Get:38 http://ftpmaster.internal/ubuntu resolute/main arm64 liblsan0 arm64 15.2.0-7ubuntu1 [1316 kB] 105s Get:39 http://ftpmaster.internal/ubuntu resolute/main arm64 libtsan2 arm64 15.2.0-7ubuntu1 [2689 kB] 106s Get:40 http://ftpmaster.internal/ubuntu resolute/main arm64 libubsan1 arm64 15.2.0-7ubuntu1 [1176 kB] 106s Get:41 http://ftpmaster.internal/ubuntu resolute/main arm64 libhwasan0 arm64 15.2.0-7ubuntu1 [1638 kB] 106s Get:42 http://ftpmaster.internal/ubuntu resolute/main arm64 libgcc-15-dev arm64 15.2.0-7ubuntu1 [2600 kB] 106s Get:43 http://ftpmaster.internal/ubuntu resolute/main arm64 gcc-15-aarch64-linux-gnu arm64 15.2.0-7ubuntu1 [23.1 MB] 108s Get:44 http://ftpmaster.internal/ubuntu resolute/main arm64 gcc-15 arm64 15.2.0-7ubuntu1 [513 kB] 108s Get:45 http://ftpmaster.internal/ubuntu resolute/main arm64 gcc-aarch64-linux-gnu arm64 4:15.2.0-4ubuntu1 [1206 B] 108s Get:46 http://ftpmaster.internal/ubuntu resolute/main arm64 gcc arm64 4:15.2.0-4ubuntu1 [5016 B] 108s Get:47 http://ftpmaster.internal/ubuntu resolute/main arm64 libstdc++-15-dev arm64 15.2.0-7ubuntu1 [2546 kB] 109s Get:48 http://ftpmaster.internal/ubuntu resolute/main arm64 g++-15-aarch64-linux-gnu arm64 15.2.0-7ubuntu1 [13.2 MB] 110s Get:49 http://ftpmaster.internal/ubuntu resolute/main arm64 g++-15 arm64 15.2.0-7ubuntu1 [23.7 kB] 110s Get:50 http://ftpmaster.internal/ubuntu resolute/main arm64 g++-aarch64-linux-gnu arm64 4:15.2.0-4ubuntu1 [956 B] 110s Get:51 http://ftpmaster.internal/ubuntu resolute/main arm64 g++ arm64 4:15.2.0-4ubuntu1 [1080 B] 110s Get:52 http://ftpmaster.internal/ubuntu resolute/main arm64 build-essential arm64 12.12ubuntu1 [5082 B] 110s Get:53 http://ftpmaster.internal/ubuntu resolute/universe arm64 cython3 arm64 3.1.6+dfsg-1ubuntu1 [3180 kB] 110s Get:54 http://ftpmaster.internal/ubuntu resolute/main arm64 libdebhelper-perl all 13.24.2ubuntu1 [95.7 kB] 110s Get:55 http://ftpmaster.internal/ubuntu resolute/main arm64 libtool all 2.5.4-4build1 [169 kB] 110s Get:56 http://ftpmaster.internal/ubuntu resolute/main arm64 dh-autoreconf all 21 [12.5 kB] 110s Get:57 http://ftpmaster.internal/ubuntu resolute/main arm64 libarchive-zip-perl all 1.68-1 [90.2 kB] 110s Get:58 http://ftpmaster.internal/ubuntu resolute/main arm64 libfile-stripnondeterminism-perl all 1.15.0-1 [20.5 kB] 110s Get:59 http://ftpmaster.internal/ubuntu resolute/main arm64 dh-strip-nondeterminism all 1.15.0-1 [5090 B] 110s Get:60 http://ftpmaster.internal/ubuntu resolute/main arm64 debugedit arm64 1:5.2-3 [49.1 kB] 110s Get:61 http://ftpmaster.internal/ubuntu resolute/main arm64 dwz arm64 0.16-2 [113 kB] 110s Get:62 http://ftpmaster.internal/ubuntu resolute/main arm64 gettext arm64 0.23.1-2build2 [1026 kB] 110s Get:63 http://ftpmaster.internal/ubuntu resolute/main arm64 intltool-debian all 0.35.0+20060710.6 [23.2 kB] 110s Get:64 http://ftpmaster.internal/ubuntu resolute/main arm64 po-debconf all 1.0.21+nmu1 [233 kB] 110s Get:65 http://ftpmaster.internal/ubuntu resolute/main arm64 debhelper all 13.24.2ubuntu1 [896 kB] 110s Get:66 http://ftpmaster.internal/ubuntu resolute/universe arm64 dh-python all 6.20250414 [119 kB] 110s Get:67 http://ftpmaster.internal/ubuntu resolute/main arm64 sgml-base all 1.31+nmu1 [11.0 kB] 110s Get:68 http://ftpmaster.internal/ubuntu resolute/main arm64 xml-core all 0.19 [20.3 kB] 110s Get:69 http://ftpmaster.internal/ubuntu resolute/main arm64 docutils-common all 0.21.2+dfsg-2 [131 kB] 110s Get:70 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 111s Get:71 http://ftpmaster.internal/ubuntu resolute/universe arm64 fonts-lyx all 2.4.4-1 [171 kB] 111s Get:72 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 111s Get:73 http://ftpmaster.internal/ubuntu resolute/universe arm64 libaec0 arm64 1.1.4-2 [22.2 kB] 111s Get:74 http://ftpmaster.internal/ubuntu resolute/main arm64 libpixman-1-0 arm64 0.46.4-1 [204 kB] 111s Get:75 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-render0 arm64 1.17.0-2build1 [18.1 kB] 111s Get:76 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-shm0 arm64 1.17.0-2build1 [6234 B] 111s Get:77 http://ftpmaster.internal/ubuntu resolute/main arm64 libcairo2 arm64 1.18.4-1build1 [592 kB] 111s Get:78 http://ftpmaster.internal/ubuntu resolute/main arm64 libdeflate0 arm64 1.23-2 [46.4 kB] 111s Get:79 http://ftpmaster.internal/ubuntu resolute/main arm64 libexpat1-dev arm64 2.7.1-2 [128 kB] 111s Get:80 http://ftpmaster.internal/ubuntu resolute/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB] 111s Get:81 http://ftpmaster.internal/ubuntu resolute/main arm64 libharfbuzz0b arm64 12.1.0-1 [523 kB] 111s Get:82 http://ftpmaster.internal/ubuntu resolute/universe arm64 libsz2 arm64 1.1.4-2 [5258 B] 111s Get:83 http://ftpmaster.internal/ubuntu resolute/universe arm64 libhdf5-310 arm64 1.14.5+repack-3build1 [1331 kB] 111s Get:84 http://ftpmaster.internal/ubuntu resolute/universe arm64 libhdf5-hl-310 arm64 1.14.5+repack-3build1 [59.8 kB] 111s Get:85 http://ftpmaster.internal/ubuntu resolute/main arm64 libimagequant0 arm64 2.18.0-1build1 [37.1 kB] 111s Get:86 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg-turbo8 arm64 2.1.5-4ubuntu2 [165 kB] 111s Get:87 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 111s Get:88 http://ftpmaster.internal/ubuntu resolute/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 111s Get:89 http://ftpmaster.internal/ubuntu resolute/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 111s Get:90 http://ftpmaster.internal/ubuntu resolute/main arm64 libjs-sphinxdoc all 8.2.3-1ubuntu2 [28.0 kB] 111s Get:91 http://ftpmaster.internal/ubuntu resolute/main arm64 libjson-perl all 4.10000-1 [81.9 kB] 111s Get:92 http://ftpmaster.internal/ubuntu resolute/main arm64 liblcms2-2 arm64 2.16-2 [170 kB] 111s Get:93 http://ftpmaster.internal/ubuntu resolute/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB] 111s Get:94 http://ftpmaster.internal/ubuntu resolute/universe arm64 liblzf1 arm64 3.6-4 [7426 B] 111s Get:95 http://ftpmaster.internal/ubuntu resolute/universe arm64 libnetcdf22 arm64 1:4.9.3-1build1 [555 kB] 111s Get:96 http://ftpmaster.internal/ubuntu resolute/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu2 [899 kB] 111s Get:97 http://ftpmaster.internal/ubuntu resolute/main arm64 libpython3.13-dev arm64 3.13.9-1 [5822 kB] 112s Get:98 http://ftpmaster.internal/ubuntu resolute/main arm64 libpython3-dev arm64 3.13.7-1 [10.8 kB] 112s Get:99 http://ftpmaster.internal/ubuntu resolute/main arm64 libpython3-all-dev arm64 3.13.7-1 [908 B] 112s Get:100 http://ftpmaster.internal/ubuntu resolute/universe arm64 libqhull-r8.0 arm64 2020.2-6build1 [189 kB] 112s Get:101 http://ftpmaster.internal/ubuntu resolute/main arm64 libraqm0 arm64 0.10.3-1 [15.0 kB] 112s Get:102 http://ftpmaster.internal/ubuntu resolute/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB] 112s Get:103 http://ftpmaster.internal/ubuntu resolute/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB] 113s Get:104 http://ftpmaster.internal/ubuntu resolute/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB] 113s Get:105 http://ftpmaster.internal/ubuntu resolute/main arm64 libtiff6 arm64 4.7.0-3ubuntu3 [196 kB] 113s Get:106 http://ftpmaster.internal/ubuntu resolute/main arm64 libwebpdemux2 arm64 1.5.0-0.1 [12.5 kB] 113s Get:107 http://ftpmaster.internal/ubuntu resolute/main arm64 libwebpmux3 arm64 1.5.0-0.1 [25.4 kB] 113s Get:108 http://ftpmaster.internal/ubuntu resolute/main arm64 libxslt1.1 arm64 1.1.43-0.3 [172 kB] 113s Get:109 http://ftpmaster.internal/ubuntu resolute/universe arm64 libzopfli1 arm64 1.0.3-3 [108 kB] 113s Get:110 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-packaging all 25.0-1 [52.8 kB] 113s Get:111 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pyproject-hooks all 1.2.0-1 [10.2 kB] 113s Get:112 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-wheel all 0.46.1-2 [22.1 kB] 113s Get:113 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-build all 1.2.2-4 [31.0 kB] 113s Get:114 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-installer all 0.7.0+dfsg1-3 [17.4 kB] 113s Get:115 http://ftpmaster.internal/ubuntu resolute/universe arm64 pybuild-plugin-pyproject all 6.20250414 [1728 B] 113s Get:116 http://ftpmaster.internal/ubuntu resolute/universe arm64 python-matplotlib-data all 3.10.7+dfsg1-1 [2930 kB] 114s Get:117 http://ftpmaster.internal/ubuntu resolute/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 116s Get:118 http://ftpmaster.internal/ubuntu resolute/universe arm64 python-mdanalysis-doc all 2.9.0-12 [3459 kB] 118s Get:119 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-all arm64 3.13.7-1 [884 B] 118s Get:120 http://ftpmaster.internal/ubuntu resolute/main arm64 python3.13-dev arm64 3.13.9-1 [508 kB] 118s Get:121 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-dev arm64 3.13.7-1 [26.6 kB] 118s Get:122 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-all-dev arm64 3.13.7-1 [906 B] 118s Get:123 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-charset-normalizer arm64 3.4.2-1 [125 kB] 118s Get:124 http://ftpmaster.internal/ubuntu resolute/main arm64 python3.14-tk arm64 3.14.0-4 [107 kB] 118s Get:125 http://ftpmaster.internal/ubuntu resolute/main arm64 python3.13-tk arm64 3.13.9-1 [106 kB] 118s Get:126 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-tk arm64 3.13.9-1 [8946 B] 118s Get:127 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pil.imagetk arm64 11.3.0-1ubuntu2 [9582 B] 118s Get:128 http://ftpmaster.internal/ubuntu resolute/main arm64 libopenjp2-7 arm64 2.5.3-2.1 [179 kB] 118s Get:129 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-pil arm64 11.3.0-1ubuntu2 [492 kB] 119s Get:130 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-cairo arm64 1.27.0-2build1 [141 kB] 119s Get:131 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-freetype all 2.5.1-2 [92.2 kB] 119s Get:132 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-rlpycairo all 0.3.0-4 [9332 B] 119s Get:133 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-reportlab all 4.4.4-2 [1147 kB] 120s Get:134 http://ftpmaster.internal/ubuntu resolute/universe arm64 w3c-sgml-lib all 1.3-3 [280 kB] 120s Get:135 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-biopython arm64 1.85+dfsg-4 [1710 kB] 122s Get:136 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-brotli arm64 1.1.0-2build6 [343 kB] 122s Get:137 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-cftime arm64 1.6.5-1 [485 kB] 123s Get:138 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-lxml arm64 6.0.1-1build1 [2149 kB] 124s Get:139 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-citeproc all 0.9.0-1 [101 kB] 124s Get:140 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-contourpy arm64 1.3.1-1build2 [253 kB] 125s Get:141 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-cycler all 0.12.1-2 [9850 B] 125s Get:142 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-dateutil all 2.9.0-4 [80.3 kB] 125s Get:143 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-decorator all 5.2.1-2 [28.1 kB] 125s Get:144 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-defusedxml all 0.7.1-3 [42.2 kB] 125s Get:145 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-roman all 5.1-1 [10.6 kB] 125s Get:146 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-docutils all 0.21.2+dfsg-2 [409 kB] 125s Get:147 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-looseversion all 1.3.0-3 [8354 B] 125s Get:148 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-duecredit all 0.10.2-2 [66.0 kB] 125s Get:149 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-monotonic all 1.6-3 [5344 B] 125s Get:150 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-fasteners all 0.19-2 [12.7 kB] 125s Get:151 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-filelock all 3.18.0-1 [13.0 kB] 125s Get:152 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-platformdirs all 4.3.7-1 [16.9 kB] 125s Get:153 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-fs all 2.4.16-7 [90.8 kB] 125s Get:154 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-lz4 arm64 4.4.4+dfsg-3 [27.6 kB] 125s Get:155 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 python3-scipy arm64 1.16.3-1 [17.4 MB] 131s Get:156 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-mpmath all 1.3.0-1 [425 kB] 131s Get:157 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-sympy all 1.13.3-5 [4229 kB] 132s Get:158 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-ufolib2 all 0.17.1+dfsg1-1 [33.5 kB] 132s Get:159 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-zopfli arm64 0.2.3.post1-1 [10.7 kB] 132s Get:160 http://ftpmaster.internal/ubuntu resolute/universe arm64 unicode-data all 16.0.0-1 [9513 kB] 134s Get:161 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-fonttools arm64 4.57.0-2build1 [1648 kB] 134s Get:162 http://ftpmaster.internal/ubuntu resolute/main arm64 sphinx-rtd-theme-common all 3.0.2+dfsg-3 [1013 kB] 134s Get:163 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-mrcfile all 1.5.4-2 [116 kB] 134s Get:164 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-griddataformats all 1.0.2-2 [2107 kB] 135s Get:165 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-gsd arm64 4.0.0-1 [235 kB] 135s Get:166 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-h5py-serial arm64 3.13.0-1ubuntu1 [1123 kB] 135s Get:167 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-h5py all 3.13.0-1ubuntu1 [8230 B] 135s Get:168 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-sortedcontainers all 2.4.0-2 [27.6 kB] 135s Get:169 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-hypothesis all 6.130.5-2 [341 kB] 135s Get:170 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-imagesize all 1.4.1-1 [6844 B] 135s Get:171 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-iniconfig all 1.1.1-2 [6024 B] 135s Get:172 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-joblib all 1.4.2-4 [205 kB] 135s Get:173 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-kiwisolver arm64 1.4.10~rc0-1 [60.1 kB] 135s Get:174 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-latexcodec all 3.0.0-1 [16.6 kB] 135s Get:175 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-matplotlib arm64 3.10.7+dfsg1-1 [17.1 MB] 138s Get:176 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-mda-xdrlib all 0.2.0-3 [11.4 kB] 138s Get:177 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-msgpack arm64 1.0.3-3build5 [103 kB] 138s Get:178 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-mmtf all 1.1.3-1 [16.2 kB] 138s Get:179 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-threadpoolctl all 3.1.0-1 [21.3 kB] 138s Get:180 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-tqdm all 4.67.1-5 [92.1 kB] 138s Get:181 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-mdanalysis arm64 2.9.0-12 [3992 kB] 138s Get:182 http://ftpmaster.internal/ubuntu resolute/main arm64 sphinx-common all 8.2.3-1ubuntu2 [656 kB] 138s Get:183 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-alabaster all 0.7.16-0.1 [18.5 kB] 138s Get:184 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-snowballstemmer all 2.2.0-4build1 [59.8 kB] 138s Get:185 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-sphinx all 8.2.3-1ubuntu2 [482 kB] 139s Get:186 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-sphinxcontrib.jquery all 4.1-6 [6856 B] 139s Get:187 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-sphinx-rtd-theme all 3.0.2+dfsg-3 [23.5 kB] 139s Get:188 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-msmb-theme all 1.2.0-4 [35.4 kB] 139s Get:189 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-netcdf4 arm64 1.7.2-1build4 [587 kB] 139s Get:190 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-networkx all 3.2.1-4ubuntu1 [11.5 MB] 145s Get:191 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-pytz all 2025.2-4 [32.3 kB] 145s Get:192 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pandas-lib arm64 2.3.3+dfsg-1ubuntu1 [6979 kB] 148s Get:193 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pandas all 2.3.3+dfsg-1ubuntu1 [2948 kB] 150s Get:194 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pluggy all 1.6.0-1 [21.0 kB] 150s Get:195 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pybtex all 0.25.1-1 [70.0 kB] 150s Get:196 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pybtex-docutils all 1.0.3-1 [7374 B] 150s Get:197 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pytest all 8.3.5-2 [252 kB] 150s Get:198 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-seaborn all 0.13.2-5 [225 kB] 150s Get:199 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-sklearn-lib arm64 1.4.2+dfsg-8 [4109 kB] 152s Get:200 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-sklearn all 1.4.2+dfsg-8 [2258 kB] 153s Get:201 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-sphinx-sitemap all 2.6.0-1 [6674 B] 153s Get:202 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-sphinxcontrib.bibtex all 2.6.2-1 [25.2 kB] 153s Fetched 225 MB in 53s (4226 kB/s) 153s Selecting previously unselected package fonts-lato. 153s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83460 files and directories currently installed.) 153s Preparing to unpack .../000-fonts-lato_2.015-1_all.deb ... 153s Unpacking fonts-lato (2.015-1) ... 154s Selecting previously unselected package python3-numpy-dev:arm64. 154s Preparing to unpack .../001-python3-numpy-dev_1%3a2.2.4+ds-1ubuntu1_arm64.deb ... 154s Unpacking python3-numpy-dev:arm64 (1:2.2.4+ds-1ubuntu1) ... 154s Selecting previously unselected package libblas3:arm64. 154s Preparing to unpack .../002-libblas3_3.12.1-6build1_arm64.deb ... 154s Unpacking libblas3:arm64 (3.12.1-6build1) ... 154s Selecting previously unselected package libgfortran5:arm64. 154s Preparing to unpack .../003-libgfortran5_15.2.0-7ubuntu1_arm64.deb ... 154s Unpacking libgfortran5:arm64 (15.2.0-7ubuntu1) ... 154s Selecting previously unselected package liblapack3:arm64. 154s Preparing to unpack .../004-liblapack3_3.12.1-6build1_arm64.deb ... 154s Unpacking liblapack3:arm64 (3.12.1-6build1) ... 154s Selecting previously unselected package python3-numpy. 154s Preparing to unpack .../005-python3-numpy_1%3a2.2.4+ds-1ubuntu1_arm64.deb ... 154s Unpacking python3-numpy (1:2.2.4+ds-1ubuntu1) ... 154s Selecting previously unselected package m4. 154s Preparing to unpack .../006-m4_1.4.20-2_arm64.deb ... 154s Unpacking m4 (1.4.20-2) ... 154s Selecting previously unselected package autoconf. 154s Preparing to unpack .../007-autoconf_2.72-3.1ubuntu1_all.deb ... 154s Unpacking autoconf (2.72-3.1ubuntu1) ... 154s Selecting previously unselected package autotools-dev. 154s Preparing to unpack .../008-autotools-dev_20240727.1_all.deb ... 154s Unpacking autotools-dev (20240727.1) ... 154s Selecting previously unselected package automake. 154s Preparing to unpack .../009-automake_1%3a1.18.1-2_all.deb ... 154s Unpacking automake (1:1.18.1-2) ... 154s Selecting previously unselected package autopoint. 154s Preparing to unpack .../010-autopoint_0.23.1-2build2_all.deb ... 154s Unpacking autopoint (0.23.1-2build2) ... 154s Selecting previously unselected package libtcl8.6:arm64. 154s Preparing to unpack .../011-libtcl8.6_8.6.17+dfsg-1_arm64.deb ... 154s Unpacking libtcl8.6:arm64 (8.6.17+dfsg-1) ... 154s Selecting previously unselected package fonts-dejavu-mono. 154s Preparing to unpack .../012-fonts-dejavu-mono_2.37-8_all.deb ... 154s Unpacking fonts-dejavu-mono (2.37-8) ... 154s Selecting previously unselected package fonts-dejavu-core. 154s Preparing to unpack .../013-fonts-dejavu-core_2.37-8_all.deb ... 154s Unpacking fonts-dejavu-core (2.37-8) ... 154s Selecting previously unselected package libfontenc1:arm64. 154s Preparing to unpack .../014-libfontenc1_1%3a1.1.8-1build1_arm64.deb ... 154s Unpacking libfontenc1:arm64 (1:1.1.8-1build1) ... 154s Selecting previously unselected package x11-common. 154s Preparing to unpack .../015-x11-common_1%3a7.7+24ubuntu1_all.deb ... 154s Unpacking x11-common (1:7.7+24ubuntu1) ... 154s Selecting previously unselected package xfonts-encodings. 154s Preparing to unpack .../016-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ... 154s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ... 155s Selecting previously unselected package xfonts-utils. 155s Preparing to unpack .../017-xfonts-utils_1%3a7.7+7_arm64.deb ... 155s Unpacking xfonts-utils (1:7.7+7) ... 155s Selecting previously unselected package fonts-urw-base35. 155s Preparing to unpack .../018-fonts-urw-base35_20200910-8_all.deb ... 155s Unpacking fonts-urw-base35 (20200910-8) ... 155s Selecting previously unselected package fontconfig-config. 155s Preparing to unpack .../019-fontconfig-config_2.15.0-2.3ubuntu1_arm64.deb ... 155s Unpacking fontconfig-config (2.15.0-2.3ubuntu1) ... 155s Selecting previously unselected package libfontconfig1:arm64. 155s Preparing to unpack .../020-libfontconfig1_2.15.0-2.3ubuntu1_arm64.deb ... 155s Unpacking libfontconfig1:arm64 (2.15.0-2.3ubuntu1) ... 155s Selecting previously unselected package libxrender1:arm64. 155s Preparing to unpack .../021-libxrender1_1%3a0.9.12-1_arm64.deb ... 155s Unpacking libxrender1:arm64 (1:0.9.12-1) ... 155s Selecting previously unselected package libxft2:arm64. 155s Preparing to unpack .../022-libxft2_2.3.6-1build1_arm64.deb ... 155s Unpacking libxft2:arm64 (2.3.6-1build1) ... 155s Selecting previously unselected package libxss1:arm64. 155s Preparing to unpack .../023-libxss1_1%3a1.2.3-1build3_arm64.deb ... 155s Unpacking libxss1:arm64 (1:1.2.3-1build3) ... 155s Selecting previously unselected package libtk8.6:arm64. 155s Preparing to unpack .../024-libtk8.6_8.6.17-1_arm64.deb ... 155s Unpacking libtk8.6:arm64 (8.6.17-1) ... 155s Selecting previously unselected package tk8.6-blt2.5. 155s Preparing to unpack .../025-tk8.6-blt2.5_2.5.3+dfsg-8_arm64.deb ... 155s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-8) ... 155s Selecting previously unselected package blt. 155s Preparing to unpack .../026-blt_2.5.3+dfsg-8_arm64.deb ... 155s Unpacking blt (2.5.3+dfsg-8) ... 155s Selecting previously unselected package libisl23:arm64. 155s Preparing to unpack .../027-libisl23_0.27-1_arm64.deb ... 155s Unpacking libisl23:arm64 (0.27-1) ... 155s Selecting previously unselected package libmpc3:arm64. 155s Preparing to unpack .../028-libmpc3_1.3.1-1build3_arm64.deb ... 155s Unpacking libmpc3:arm64 (1.3.1-1build3) ... 155s Selecting previously unselected package cpp-15-aarch64-linux-gnu. 155s Preparing to unpack .../029-cpp-15-aarch64-linux-gnu_15.2.0-7ubuntu1_arm64.deb ... 155s Unpacking cpp-15-aarch64-linux-gnu (15.2.0-7ubuntu1) ... 156s Selecting previously unselected package cpp-15. 156s Preparing to unpack .../030-cpp-15_15.2.0-7ubuntu1_arm64.deb ... 156s Unpacking cpp-15 (15.2.0-7ubuntu1) ... 156s Selecting previously unselected package cpp-aarch64-linux-gnu. 156s Preparing to unpack .../031-cpp-aarch64-linux-gnu_4%3a15.2.0-4ubuntu1_arm64.deb ... 156s Unpacking cpp-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 156s Selecting previously unselected package cpp. 156s Preparing to unpack .../032-cpp_4%3a15.2.0-4ubuntu1_arm64.deb ... 156s Unpacking cpp (4:15.2.0-4ubuntu1) ... 156s Selecting previously unselected package libcc1-0:arm64. 156s Preparing to unpack .../033-libcc1-0_15.2.0-7ubuntu1_arm64.deb ... 156s Unpacking libcc1-0:arm64 (15.2.0-7ubuntu1) ... 156s Selecting previously unselected package libgomp1:arm64. 156s Preparing to unpack .../034-libgomp1_15.2.0-7ubuntu1_arm64.deb ... 156s Unpacking libgomp1:arm64 (15.2.0-7ubuntu1) ... 156s Selecting previously unselected package libitm1:arm64. 156s Preparing to unpack .../035-libitm1_15.2.0-7ubuntu1_arm64.deb ... 156s Unpacking libitm1:arm64 (15.2.0-7ubuntu1) ... 156s Selecting previously unselected package libasan8:arm64. 156s Preparing to unpack .../036-libasan8_15.2.0-7ubuntu1_arm64.deb ... 156s Unpacking libasan8:arm64 (15.2.0-7ubuntu1) ... 156s Selecting previously unselected package liblsan0:arm64. 156s Preparing to unpack .../037-liblsan0_15.2.0-7ubuntu1_arm64.deb ... 156s Unpacking liblsan0:arm64 (15.2.0-7ubuntu1) ... 156s Selecting previously unselected package libtsan2:arm64. 156s Preparing to unpack .../038-libtsan2_15.2.0-7ubuntu1_arm64.deb ... 156s Unpacking libtsan2:arm64 (15.2.0-7ubuntu1) ... 156s Selecting previously unselected package libubsan1:arm64. 156s Preparing to unpack .../039-libubsan1_15.2.0-7ubuntu1_arm64.deb ... 156s Unpacking libubsan1:arm64 (15.2.0-7ubuntu1) ... 156s Selecting previously unselected package libhwasan0:arm64. 156s Preparing to unpack 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unselected package libarchive-zip-perl. 158s Preparing to unpack .../056-libarchive-zip-perl_1.68-1_all.deb ... 158s Unpacking libarchive-zip-perl (1.68-1) ... 158s Selecting previously unselected package libfile-stripnondeterminism-perl. 158s Preparing to unpack .../057-libfile-stripnondeterminism-perl_1.15.0-1_all.deb ... 158s Unpacking libfile-stripnondeterminism-perl (1.15.0-1) ... 158s Selecting previously unselected package dh-strip-nondeterminism. 158s Preparing to unpack .../058-dh-strip-nondeterminism_1.15.0-1_all.deb ... 158s Unpacking dh-strip-nondeterminism (1.15.0-1) ... 158s Selecting previously unselected package debugedit. 158s Preparing to unpack .../059-debugedit_1%3a5.2-3_arm64.deb ... 158s Unpacking debugedit (1:5.2-3) ... 158s Selecting previously unselected package dwz. 158s Preparing to unpack .../060-dwz_0.16-2_arm64.deb ... 158s Unpacking dwz (0.16-2) ... 158s Selecting previously unselected package gettext. 158s Preparing to unpack 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xml-core. 158s Preparing to unpack .../067-xml-core_0.19_all.deb ... 158s Unpacking xml-core (0.19) ... 158s Selecting previously unselected package docutils-common. 158s Preparing to unpack .../068-docutils-common_0.21.2+dfsg-2_all.deb ... 158s Unpacking docutils-common (0.21.2+dfsg-2) ... 158s Selecting previously unselected package fonts-font-awesome. 158s Preparing to unpack .../069-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 158s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 158s Selecting previously unselected package fonts-lyx. 158s Preparing to unpack .../070-fonts-lyx_2.4.4-1_all.deb ... 158s Unpacking fonts-lyx (2.4.4-1) ... 158s Selecting previously unselected package fonts-mathjax. 158s Preparing to unpack .../071-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 158s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 159s Selecting previously unselected package libaec0:arm64. 159s Preparing to unpack .../072-libaec0_1.1.4-2_arm64.deb ... 159s Unpacking libaec0:arm64 (1.1.4-2) ... 159s Selecting previously unselected package libpixman-1-0:arm64. 159s Preparing to unpack .../073-libpixman-1-0_0.46.4-1_arm64.deb ... 159s Unpacking libpixman-1-0:arm64 (0.46.4-1) ... 159s Selecting previously unselected package libxcb-render0:arm64. 159s Preparing to unpack .../074-libxcb-render0_1.17.0-2build1_arm64.deb ... 159s Unpacking libxcb-render0:arm64 (1.17.0-2build1) ... 159s Selecting previously unselected package libxcb-shm0:arm64. 159s Preparing to unpack .../075-libxcb-shm0_1.17.0-2build1_arm64.deb ... 159s Unpacking libxcb-shm0:arm64 (1.17.0-2build1) ... 159s Selecting previously unselected package libcairo2:arm64. 159s Preparing to unpack .../076-libcairo2_1.18.4-1build1_arm64.deb ... 159s Unpacking libcairo2:arm64 (1.18.4-1build1) ... 159s Selecting previously unselected package libdeflate0:arm64. 159s Preparing to unpack .../077-libdeflate0_1.23-2_arm64.deb ... 159s Unpacking libdeflate0:arm64 (1.23-2) ... 159s Selecting previously unselected package libexpat1-dev:arm64. 159s Preparing to unpack .../078-libexpat1-dev_2.7.1-2_arm64.deb ... 159s Unpacking libexpat1-dev:arm64 (2.7.1-2) ... 159s Selecting previously unselected package libgraphite2-3:arm64. 159s Preparing to unpack .../079-libgraphite2-3_1.3.14-2ubuntu1_arm64.deb ... 159s Unpacking libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 159s Selecting previously unselected package libharfbuzz0b:arm64. 159s Preparing to unpack .../080-libharfbuzz0b_12.1.0-1_arm64.deb ... 159s Unpacking libharfbuzz0b:arm64 (12.1.0-1) ... 159s Selecting previously unselected package libsz2:arm64. 159s Preparing to unpack .../081-libsz2_1.1.4-2_arm64.deb ... 159s Unpacking libsz2:arm64 (1.1.4-2) ... 159s Selecting previously unselected package libhdf5-310:arm64. 159s Preparing to unpack .../082-libhdf5-310_1.14.5+repack-3build1_arm64.deb ... 159s Unpacking libhdf5-310:arm64 (1.14.5+repack-3build1) ... 159s Selecting previously unselected package libhdf5-hl-310:arm64. 159s Preparing to unpack .../083-libhdf5-hl-310_1.14.5+repack-3build1_arm64.deb ... 159s Unpacking libhdf5-hl-310:arm64 (1.14.5+repack-3build1) ... 159s Selecting previously unselected package libimagequant0:arm64. 159s Preparing to unpack .../084-libimagequant0_2.18.0-1build1_arm64.deb ... 159s Unpacking libimagequant0:arm64 (2.18.0-1build1) ... 159s Selecting previously unselected package libjpeg-turbo8:arm64. 159s Preparing to unpack .../085-libjpeg-turbo8_2.1.5-4ubuntu2_arm64.deb ... 159s Unpacking libjpeg-turbo8:arm64 (2.1.5-4ubuntu2) ... 159s Selecting previously unselected package libjpeg8:arm64. 160s Preparing to unpack .../086-libjpeg8_8c-2ubuntu11_arm64.deb ... 160s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 160s Selecting previously unselected package libjs-jquery. 160s Preparing to unpack .../087-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 160s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 160s Selecting previously unselected package libjs-underscore. 160s Preparing to unpack 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(3.13.7-1) ... 160s Selecting previously unselected package libqhull-r8.0:arm64. 160s Preparing to unpack .../099-libqhull-r8.0_2020.2-6build1_arm64.deb ... 160s Unpacking libqhull-r8.0:arm64 (2020.2-6build1) ... 160s Selecting previously unselected package libraqm0:arm64. 160s Preparing to unpack .../100-libraqm0_0.10.3-1_arm64.deb ... 160s Unpacking libraqm0:arm64 (0.10.3-1) ... 160s Selecting previously unselected package libsharpyuv0:arm64. 161s Preparing to unpack .../101-libsharpyuv0_1.5.0-0.1_arm64.deb ... 161s Unpacking libsharpyuv0:arm64 (1.5.0-0.1) ... 161s Selecting previously unselected package libjbig0:arm64. 161s Preparing to unpack .../102-libjbig0_2.1-6.1ubuntu2_arm64.deb ... 161s Unpacking libjbig0:arm64 (2.1-6.1ubuntu2) ... 161s Selecting previously unselected package libwebp7:arm64. 161s Preparing to unpack .../103-libwebp7_1.5.0-0.1_arm64.deb ... 161s Unpacking libwebp7:arm64 (1.5.0-0.1) ... 161s Selecting previously unselected package libtiff6:arm64. 161s Preparing to unpack .../104-libtiff6_4.7.0-3ubuntu3_arm64.deb ... 161s Unpacking libtiff6:arm64 (4.7.0-3ubuntu3) ... 161s Selecting previously unselected package libwebpdemux2:arm64. 161s Preparing to unpack .../105-libwebpdemux2_1.5.0-0.1_arm64.deb ... 161s Unpacking libwebpdemux2:arm64 (1.5.0-0.1) ... 161s Selecting previously unselected package libwebpmux3:arm64. 161s Preparing to unpack .../106-libwebpmux3_1.5.0-0.1_arm64.deb ... 161s Unpacking libwebpmux3:arm64 (1.5.0-0.1) ... 161s Selecting previously unselected package libxslt1.1:arm64. 161s Preparing to unpack .../107-libxslt1.1_1.1.43-0.3_arm64.deb ... 161s Unpacking libxslt1.1:arm64 (1.1.43-0.3) ... 161s Selecting previously unselected package libzopfli1. 161s Preparing to unpack .../108-libzopfli1_1.0.3-3_arm64.deb ... 161s Unpacking libzopfli1 (1.0.3-3) ... 161s Selecting previously unselected package python3-packaging. 161s Preparing to unpack .../109-python3-packaging_25.0-1_all.deb ... 161s Unpacking python3-packaging (25.0-1) ... 161s Selecting previously unselected package python3-pyproject-hooks. 161s Preparing to unpack .../110-python3-pyproject-hooks_1.2.0-1_all.deb ... 161s Unpacking python3-pyproject-hooks (1.2.0-1) ... 161s Selecting previously unselected package python3-wheel. 161s Preparing to unpack .../111-python3-wheel_0.46.1-2_all.deb ... 161s Unpacking python3-wheel (0.46.1-2) ... 161s Selecting previously unselected package python3-build. 161s Preparing to unpack .../112-python3-build_1.2.2-4_all.deb ... 161s Unpacking python3-build (1.2.2-4) ... 161s Selecting previously unselected package python3-installer. 161s Preparing to unpack .../113-python3-installer_0.7.0+dfsg1-3_all.deb ... 161s Unpacking python3-installer (0.7.0+dfsg1-3) ... 161s Selecting previously unselected package pybuild-plugin-pyproject. 161s Preparing to unpack .../114-pybuild-plugin-pyproject_6.20250414_all.deb ... 161s Unpacking pybuild-plugin-pyproject (6.20250414) ... 161s Selecting previously unselected package python-matplotlib-data. 161s Preparing to unpack .../115-python-matplotlib-data_3.10.7+dfsg1-1_all.deb ... 161s Unpacking python-matplotlib-data (3.10.7+dfsg1-1) ... 161s Selecting previously unselected package libjs-mathjax. 161s Preparing to unpack .../116-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 161s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 162s Selecting previously unselected package python-mdanalysis-doc. 162s Preparing to unpack .../117-python-mdanalysis-doc_2.9.0-12_all.deb ... 162s Unpacking python-mdanalysis-doc (2.9.0-12) ... 162s Selecting previously unselected package python3-all. 162s Preparing to unpack .../118-python3-all_3.13.7-1_arm64.deb ... 162s Unpacking python3-all (3.13.7-1) ... 162s Selecting previously unselected package python3.13-dev. 163s Preparing to unpack .../119-python3.13-dev_3.13.9-1_arm64.deb ... 163s Unpacking python3.13-dev (3.13.9-1) ... 163s Selecting previously unselected package python3-dev. 163s Preparing to unpack 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163s Selecting previously unselected package python3-pil.imagetk:arm64. 163s Preparing to unpack .../126-python3-pil.imagetk_11.3.0-1ubuntu2_arm64.deb ... 163s Unpacking python3-pil.imagetk:arm64 (11.3.0-1ubuntu2) ... 163s Selecting previously unselected package libopenjp2-7:arm64. 163s Preparing to unpack .../127-libopenjp2-7_2.5.3-2.1_arm64.deb ... 163s Unpacking libopenjp2-7:arm64 (2.5.3-2.1) ... 163s Selecting previously unselected package python3-pil:arm64. 163s Preparing to unpack .../128-python3-pil_11.3.0-1ubuntu2_arm64.deb ... 163s Unpacking python3-pil:arm64 (11.3.0-1ubuntu2) ... 163s Selecting previously unselected package python3-cairo. 163s Preparing to unpack .../129-python3-cairo_1.27.0-2build1_arm64.deb ... 163s Unpacking python3-cairo (1.27.0-2build1) ... 163s Selecting previously unselected package python3-freetype. 164s Preparing to unpack .../130-python3-freetype_2.5.1-2_all.deb ... 164s Unpacking python3-freetype (2.5.1-2) ... 164s Selecting previously unselected package python3-rlpycairo. 164s Preparing to unpack .../131-python3-rlpycairo_0.3.0-4_all.deb ... 164s Unpacking python3-rlpycairo (0.3.0-4) ... 164s Selecting previously unselected package python3-reportlab. 164s Preparing to unpack .../132-python3-reportlab_4.4.4-2_all.deb ... 164s Unpacking python3-reportlab (4.4.4-2) ... 164s Selecting previously unselected package w3c-sgml-lib. 164s Preparing to unpack .../133-w3c-sgml-lib_1.3-3_all.deb ... 164s Unpacking w3c-sgml-lib (1.3-3) ... 164s Selecting previously unselected package python3-biopython. 164s Preparing to unpack .../134-python3-biopython_1.85+dfsg-4_arm64.deb ... 164s Unpacking python3-biopython (1.85+dfsg-4) ... 164s Selecting previously unselected package python3-brotli. 164s Preparing to unpack .../135-python3-brotli_1.1.0-2build6_arm64.deb ... 164s Unpacking python3-brotli (1.1.0-2build6) ... 164s Selecting previously unselected package python3-cftime. 164s Preparing to unpack .../136-python3-cftime_1.6.5-1_arm64.deb ... 164s Unpacking python3-cftime (1.6.5-1) ... 164s Selecting previously unselected package python3-lxml:arm64. 164s Preparing to unpack .../137-python3-lxml_6.0.1-1build1_arm64.deb ... 164s Unpacking python3-lxml:arm64 (6.0.1-1build1) ... 164s Selecting previously unselected package python3-citeproc. 164s Preparing to unpack .../138-python3-citeproc_0.9.0-1_all.deb ... 164s Unpacking python3-citeproc (0.9.0-1) ... 164s Selecting previously unselected package python3-contourpy. 164s Preparing to unpack .../139-python3-contourpy_1.3.1-1build2_arm64.deb ... 164s Unpacking python3-contourpy (1.3.1-1build2) ... 164s Selecting previously unselected package python3-cycler. 164s Preparing to unpack .../140-python3-cycler_0.12.1-2_all.deb ... 164s Unpacking python3-cycler (0.12.1-2) ... 164s Selecting previously unselected package python3-dateutil. 164s Preparing to unpack .../141-python3-dateutil_2.9.0-4_all.deb ... 164s Unpacking python3-dateutil (2.9.0-4) ... 164s Selecting previously unselected package python3-decorator. 165s Preparing to unpack .../142-python3-decorator_5.2.1-2_all.deb ... 165s Unpacking python3-decorator (5.2.1-2) ... 165s Selecting previously unselected package python3-defusedxml. 165s Preparing to unpack .../143-python3-defusedxml_0.7.1-3_all.deb ... 165s Unpacking python3-defusedxml (0.7.1-3) ... 165s Selecting previously unselected package python3-roman. 165s Preparing to unpack .../144-python3-roman_5.1-1_all.deb ... 165s Unpacking python3-roman (5.1-1) ... 165s Selecting previously unselected package python3-docutils. 165s Preparing to unpack .../145-python3-docutils_0.21.2+dfsg-2_all.deb ... 165s Unpacking python3-docutils (0.21.2+dfsg-2) ... 165s Selecting previously unselected package python3-looseversion. 165s Preparing to unpack .../146-python3-looseversion_1.3.0-3_all.deb ... 165s Unpacking python3-looseversion (1.3.0-3) ... 165s Selecting previously unselected package python3-duecredit. 165s Preparing to unpack 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Selecting previously unselected package python3-lz4. 165s Preparing to unpack .../153-python3-lz4_4.4.4+dfsg-3_arm64.deb ... 165s Unpacking python3-lz4 (4.4.4+dfsg-3) ... 165s Selecting previously unselected package python3-scipy. 165s Preparing to unpack .../154-python3-scipy_1.16.3-1_arm64.deb ... 165s Unpacking python3-scipy (1.16.3-1) ... 166s Selecting previously unselected package python3-mpmath. 166s Preparing to unpack .../155-python3-mpmath_1.3.0-1_all.deb ... 166s Unpacking python3-mpmath (1.3.0-1) ... 166s Selecting previously unselected package python3-sympy. 166s Preparing to unpack .../156-python3-sympy_1.13.3-5_all.deb ... 166s Unpacking python3-sympy (1.13.3-5) ... 166s Selecting previously unselected package python3-ufolib2. 166s Preparing to unpack .../157-python3-ufolib2_0.17.1+dfsg1-1_all.deb ... 166s Unpacking python3-ufolib2 (0.17.1+dfsg1-1) ... 166s Selecting previously unselected package python3-zopfli. 166s Preparing to unpack .../158-python3-zopfli_0.2.3.post1-1_arm64.deb ... 166s Unpacking python3-zopfli (0.2.3.post1-1) ... 166s Selecting previously unselected package unicode-data. 167s Preparing to unpack .../159-unicode-data_16.0.0-1_all.deb ... 167s Unpacking unicode-data (16.0.0-1) ... 167s Selecting previously unselected package python3-fonttools. 167s Preparing to unpack .../160-python3-fonttools_4.57.0-2build1_arm64.deb ... 167s Unpacking python3-fonttools (4.57.0-2build1) ... 167s Selecting previously unselected package sphinx-rtd-theme-common. 167s Preparing to unpack .../161-sphinx-rtd-theme-common_3.0.2+dfsg-3_all.deb ... 167s Unpacking sphinx-rtd-theme-common (3.0.2+dfsg-3) ... 167s Selecting previously unselected package python3-mrcfile. 167s Preparing to unpack .../162-python3-mrcfile_1.5.4-2_all.deb ... 167s Unpacking python3-mrcfile (1.5.4-2) ... 167s Selecting previously unselected package python3-griddataformats. 167s Preparing to unpack .../163-python3-griddataformats_1.0.2-2_all.deb ... 167s Unpacking python3-griddataformats (1.0.2-2) ... 167s Selecting previously unselected package python3-gsd. 167s Preparing to unpack .../164-python3-gsd_4.0.0-1_arm64.deb ... 167s Unpacking python3-gsd (4.0.0-1) ... 167s Selecting previously unselected package python3-h5py-serial. 167s Preparing to unpack .../165-python3-h5py-serial_3.13.0-1ubuntu1_arm64.deb ... 167s Unpacking python3-h5py-serial (3.13.0-1ubuntu1) ... 167s Selecting previously unselected package python3-h5py. 167s Preparing to unpack .../166-python3-h5py_3.13.0-1ubuntu1_all.deb ... 167s Unpacking python3-h5py (3.13.0-1ubuntu1) ... 167s Selecting previously unselected package python3-sortedcontainers. 167s Preparing to unpack .../167-python3-sortedcontainers_2.4.0-2_all.deb ... 167s Unpacking python3-sortedcontainers (2.4.0-2) ... 167s Selecting previously unselected package python3-hypothesis. 167s Preparing to unpack .../168-python3-hypothesis_6.130.5-2_all.deb ... 167s Unpacking python3-hypothesis (6.130.5-2) ... 167s Selecting previously unselected package python3-imagesize. 168s Preparing to unpack .../169-python3-imagesize_1.4.1-1_all.deb ... 168s Unpacking python3-imagesize (1.4.1-1) ... 168s Selecting previously unselected package python3-iniconfig. 168s Preparing to unpack .../170-python3-iniconfig_1.1.1-2_all.deb ... 168s Unpacking python3-iniconfig (1.1.1-2) ... 168s Selecting previously unselected package python3-joblib. 168s Preparing to unpack .../171-python3-joblib_1.4.2-4_all.deb ... 168s Unpacking python3-joblib (1.4.2-4) ... 168s Selecting previously unselected package python3-kiwisolver. 168s Preparing to unpack .../172-python3-kiwisolver_1.4.10~rc0-1_arm64.deb ... 168s Unpacking python3-kiwisolver (1.4.10~rc0-1) ... 168s Selecting previously unselected package python3-latexcodec. 168s Preparing to unpack .../173-python3-latexcodec_3.0.0-1_all.deb ... 168s Unpacking python3-latexcodec (3.0.0-1) ... 168s Selecting previously unselected package python3-matplotlib. 168s Preparing to unpack .../174-python3-matplotlib_3.10.7+dfsg1-1_arm64.deb ... 168s Unpacking python3-matplotlib (3.10.7+dfsg1-1) ... 168s Selecting previously unselected package python3-mda-xdrlib. 168s Preparing to unpack .../175-python3-mda-xdrlib_0.2.0-3_all.deb ... 168s Unpacking python3-mda-xdrlib (0.2.0-3) ... 168s Selecting previously unselected package python3-msgpack. 168s Preparing to unpack .../176-python3-msgpack_1.0.3-3build5_arm64.deb ... 168s Unpacking python3-msgpack (1.0.3-3build5) ... 168s Selecting previously unselected package python3-mmtf. 168s Preparing to unpack .../177-python3-mmtf_1.1.3-1_all.deb ... 168s Unpacking python3-mmtf (1.1.3-1) ... 169s Selecting previously unselected package python3-threadpoolctl. 169s Preparing to unpack .../178-python3-threadpoolctl_3.1.0-1_all.deb ... 169s Unpacking python3-threadpoolctl (3.1.0-1) ... 169s Selecting previously unselected package python3-tqdm. 169s Preparing to unpack .../179-python3-tqdm_4.67.1-5_all.deb ... 169s Unpacking python3-tqdm (4.67.1-5) ... 169s Selecting previously unselected package python3-mdanalysis. 169s Preparing to unpack .../180-python3-mdanalysis_2.9.0-12_arm64.deb ... 169s Unpacking python3-mdanalysis (2.9.0-12) ... 169s Selecting previously unselected package sphinx-common. 169s Preparing to unpack .../181-sphinx-common_8.2.3-1ubuntu2_all.deb ... 169s Unpacking sphinx-common (8.2.3-1ubuntu2) ... 169s Selecting previously unselected package python3-alabaster. 169s Preparing to unpack .../182-python3-alabaster_0.7.16-0.1_all.deb ... 169s Unpacking python3-alabaster (0.7.16-0.1) ... 169s Selecting previously unselected package python3-snowballstemmer. 169s Preparing to unpack .../183-python3-snowballstemmer_2.2.0-4build1_all.deb ... 169s Unpacking python3-snowballstemmer (2.2.0-4build1) ... 169s Selecting previously unselected package python3-sphinx. 169s Preparing to unpack .../184-python3-sphinx_8.2.3-1ubuntu2_all.deb ... 169s Unpacking python3-sphinx (8.2.3-1ubuntu2) ... 169s Selecting previously unselected package python3-sphinxcontrib.jquery. 169s Preparing to unpack .../185-python3-sphinxcontrib.jquery_4.1-6_all.deb ... 169s Unpacking python3-sphinxcontrib.jquery (4.1-6) ... 169s Selecting previously unselected package python3-sphinx-rtd-theme. 169s Preparing to unpack .../186-python3-sphinx-rtd-theme_3.0.2+dfsg-3_all.deb ... 169s Unpacking python3-sphinx-rtd-theme (3.0.2+dfsg-3) ... 169s Selecting previously unselected package python3-msmb-theme. 169s Preparing to unpack .../187-python3-msmb-theme_1.2.0-4_all.deb ... 169s Unpacking python3-msmb-theme (1.2.0-4) ... 169s Selecting previously unselected package python3-netcdf4. 170s Preparing to unpack .../188-python3-netcdf4_1.7.2-1build4_arm64.deb ... 170s Unpacking python3-netcdf4 (1.7.2-1build4) ... 170s Selecting previously unselected package python3-networkx. 170s Preparing to unpack .../189-python3-networkx_3.2.1-4ubuntu1_all.deb ... 170s Unpacking python3-networkx (3.2.1-4ubuntu1) ... 170s Selecting previously unselected package python3-pytz. 170s Preparing to unpack .../190-python3-pytz_2025.2-4_all.deb ... 170s Unpacking python3-pytz (2025.2-4) ... 170s Selecting previously unselected package python3-pandas-lib:arm64. 170s Preparing to unpack .../191-python3-pandas-lib_2.3.3+dfsg-1ubuntu1_arm64.deb ... 170s Unpacking python3-pandas-lib:arm64 (2.3.3+dfsg-1ubuntu1) ... 171s Selecting previously unselected package python3-pandas. 171s Preparing to unpack .../192-python3-pandas_2.3.3+dfsg-1ubuntu1_all.deb ... 171s Unpacking python3-pandas (2.3.3+dfsg-1ubuntu1) ... 171s Selecting previously unselected package python3-pluggy. 171s Preparing to unpack .../193-python3-pluggy_1.6.0-1_all.deb ... 171s Unpacking python3-pluggy (1.6.0-1) ... 171s Selecting previously unselected package python3-pybtex. 171s Preparing to unpack .../194-python3-pybtex_0.25.1-1_all.deb ... 171s Unpacking python3-pybtex (0.25.1-1) ... 171s Selecting previously unselected package 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173s Setting up libxcb-render0:arm64 (1.17.0-2build1) ... 173s Setting up python3-defusedxml (0.7.1-3) ... 173s Setting up libarchive-zip-perl (1.68-1) ... 173s Setting up python3-charset-normalizer (3.4.2-1) ... 173s Setting up python3-alabaster (0.7.16-0.1) ... 173s Setting up fonts-lyx (2.4.4-1) ... 173s Setting up libdebhelper-perl (13.24.2ubuntu1) ... 173s Setting up python3-tqdm (4.67.1-5) ... 173s Setting up python3-threadpoolctl (3.1.0-1) ... 174s Setting up x11-common (1:7.7+24ubuntu1) ... 174s Setting up libdeflate0:arm64 (1.23-2) ... 174s Setting up m4 (1.4.20-2) ... 174s Setting up python3-latexcodec (3.0.0-1) ... 174s Setting up libqhull-r8.0:arm64 (2020.2-6build1) ... 174s Setting up python3-all (3.13.7-1) ... 174s Setting up python3-pytz (2025.2-4) ... 174s Setting up libxcb-shm0:arm64 (1.17.0-2build1) ... 174s Setting up python3-sortedcontainers (2.4.0-2) ... 175s Setting up libgomp1:arm64 (15.2.0-7ubuntu1) ... 175s Setting up python3-freetype (2.5.1-2) ... 175s Setting up python3-networkx (3.2.1-4ubuntu1) ... 176s Setting up libjbig0:arm64 (2.1-6.1ubuntu2) ... 176s Setting up python3-mda-xdrlib (0.2.0-3) ... 176s Setting up libaec0:arm64 (1.1.4-2) ... 176s Setting up python3-platformdirs (4.3.7-1) ... 176s Setting up python3-monotonic (1.6-3) ... 176s Setting up python3-fs (2.4.16-7) ... 177s Setting up unicode-data (16.0.0-1) ... 177s Setting up python3-roman (5.1-1) ... 177s Setting up python3-decorator (5.2.1-2) ... 177s Setting up libfontenc1:arm64 (1:1.1.8-1build1) ... 177s Setting up autotools-dev (20240727.1) ... 177s Setting up libblas3:arm64 (3.12.1-6build1) ... 177s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 177s Setting up python3-packaging (25.0-1) ... 177s Setting up libexpat1-dev:arm64 (2.7.1-2) ... 177s Setting up python3-pyproject-hooks (1.2.0-1) ... 177s Setting up libzopfli1 (1.0.3-3) ... 177s Setting up python3-snowballstemmer (2.2.0-4build1) ... 178s Setting up python3-brotli (1.1.0-2build6) ... 178s Setting up liblzf1:arm64 (3.6-4) ... 178s Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ... 178s Setting up python3-cycler (0.12.1-2) ... 178s Setting up libimagequant0:arm64 (2.18.0-1build1) ... 178s Setting up fonts-dejavu-mono (2.37-8) ... 178s Setting up python3-kiwisolver (1.4.10~rc0-1) ... 178s Setting up libmpc3:arm64 (1.3.1-1build3) ... 178s Setting up python3-numpy-dev:arm64 (1:2.2.4+ds-1ubuntu1) ... 178s Setting up cython3 (3.1.6+dfsg-1ubuntu1) ... 179s Setting up libtcl8.6:arm64 (8.6.17+dfsg-1) ... 179s Setting up autopoint (0.23.1-2build2) ... 179s Setting up fonts-dejavu-core (2.37-8) ... 179s Setting up python3-fasteners (0.19-2) ... 179s Setting up libjpeg-turbo8:arm64 (2.1.5-4ubuntu2) ... 179s Setting up python3-installer (0.7.0+dfsg1-3) ... 179s Setting up libgfortran5:arm64 (15.2.0-7ubuntu1) ... 179s Setting up autoconf (2.72-3.1ubuntu1) ... 179s Setting up python3-pluggy (1.6.0-1) ... 180s Setting up libwebp7:arm64 (1.5.0-0.1) ... 180s Setting up python3-pybtex (0.25.1-1) ... 180s Setting up libubsan1:arm64 (15.2.0-7ubuntu1) ... 180s Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu2) ... 180s Setting up dwz (0.16-2) ... 180s Setting up python3-looseversion (1.3.0-3) ... 180s Setting up libhwasan0:arm64 (15.2.0-7ubuntu1) ... 180s Setting up libasan8:arm64 (15.2.0-7ubuntu1) ... 180s Setting up libjson-perl (4.10000-1) ... 180s Setting up libxslt1.1:arm64 (1.1.43-0.3) ... 180s Setting up debugedit (1:5.2-3) ... 180s Setting up libopenjp2-7:arm64 (2.5.3-2.1) ... 180s Setting up libharfbuzz0b:arm64 (12.1.0-1) ... 180s Setting up python3-dateutil (2.9.0-4) ... 180s Setting up sgml-base (1.31+nmu1) ... 180s Setting up python3-msgpack (1.0.3-3build5) ... 180s Setting up libxss1:arm64 (1:1.2.3-1build3) ... 180s Setting up libtsan2:arm64 (15.2.0-7ubuntu1) ... 180s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 180s Setting up python3-mpmath (1.3.0-1) ... 181s Setting up libisl23:arm64 (0.27-1) ... 181s Setting up python-matplotlib-data (3.10.7+dfsg1-1) ... 181s Setting up libwebpmux3:arm64 (1.5.0-0.1) ... 181s Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 181s Setting up sphinx-rtd-theme-common (3.0.2+dfsg-3) ... 181s Setting up libcc1-0:arm64 (15.2.0-7ubuntu1) ... 181s Setting up liblsan0:arm64 (15.2.0-7ubuntu1) ... 181s Setting up libsz2:arm64 (1.1.4-2) ... 181s Setting up libitm1:arm64 (15.2.0-7ubuntu1) ... 181s Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 181s Setting up python3-imagesize (1.4.1-1) ... 181s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 181s Setting up automake (1:1.18.1-2) ... 181s update-alternatives: using /usr/bin/automake-1.18 to provide /usr/bin/automake (automake) in auto mode 181s Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... 181s Setting up python3-sympy (1.13.3-5) ... 187s Setting up cpp-15-aarch64-linux-gnu (15.2.0-7ubuntu1) ... 187s Setting up liblapack3:arm64 (3.12.1-6build1) ... 187s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 187s Setting up gettext (0.23.1-2build2) ... 187s Setting up libgcc-15-dev:arm64 (15.2.0-7ubuntu1) ... 187s Setting up fontconfig-config (2.15.0-2.3ubuntu1) ... 187s Setting up python3-pytest (8.3.5-2) ... 188s Setting up libwebpdemux2:arm64 (1.5.0-0.1) ... 188s Setting up python3-hypothesis (6.130.5-2) ... 188s Setting up xfonts-utils (1:7.7+7) ... 188s Setting up python3-wheel (0.46.1-2) ... 188s Setting up python3-zopfli (0.2.3.post1-1) ... 188s Setting up intltool-debian (0.35.0+20060710.6) ... 188s Setting up cpp-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 188s Setting up libstdc++-15-dev:arm64 (15.2.0-7ubuntu1) ... 188s Setting up libraqm0:arm64 (0.10.3-1) ... 188s Setting up libpython3.13-dev:arm64 (3.13.9-1) ... 188s Setting up python3-numpy 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(6.20250414) ... 195s Setting up python3.13-dev (3.13.9-1) ... 195s Setting up po-debconf (1.0.21+nmu1) ... 195s Setting up libtk8.6:arm64 (8.6.17-1) ... 195s Setting up python3-pandas-lib:arm64 (2.3.3+dfsg-1ubuntu1) ... 195s Setting up libnetcdf22:arm64 (1:4.9.3-1build1) ... 195s Setting up python3-sklearn-lib:arm64 (1.4.2+dfsg-8) ... 195s Setting up python3-h5py-serial (3.13.0-1ubuntu1) ... 195s Setting up python3-gsd (4.0.0-1) ... 196s Setting up python3-mmtf (1.1.3-1) ... 196s Setting up fonts-urw-base35 (20200910-8) ... 196s Setting up libcairo2:arm64 (1.18.4-1build1) ... 196s Setting up python3.13-tk (3.13.9-1) ... 196s Setting up python-mdanalysis-doc (2.9.0-12) ... 196s Setting up python3-pil:arm64 (11.3.0-1ubuntu2) ... 196s Setting up gcc-15 (15.2.0-7ubuntu1) ... 196s Setting up python3-griddataformats (1.0.2-2) ... 197s Setting up python3-pandas (2.3.3+dfsg-1ubuntu1) ... 202s Setting up g++-15-aarch64-linux-gnu (15.2.0-7ubuntu1) ... 202s Setting up libpython3-all-dev:arm64 (3.13.7-1) ... 202s Setting up sphinx-common (8.2.3-1ubuntu2) ... 202s Setting up python3-dev (3.13.7-1) ... 202s Setting up python3-h5py (3.13.0-1ubuntu1) ... 202s Setting up python3-sklearn (1.4.2+dfsg-8) ... 204s Setting up python3-cftime (1.6.5-1) ... 204s Setting up g++-15 (15.2.0-7ubuntu1) ... 204s Setting up python3-netcdf4 (1.7.2-1build4) ... 204s Setting up python3-all-dev (3.13.7-1) ... 204s Setting up gcc-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 204s Setting up tk8.6-blt2.5 (2.5.3+dfsg-8) ... 204s Setting up python3.14-tk (3.14.0-4) ... 204s Setting up python3-cairo (1.27.0-2build1) ... 204s Setting up python3-duecredit (0.10.2-2) ... 204s Setting up libtool (2.5.4-4build1) ... 204s Setting up blt (2.5.3+dfsg-8) ... 204s Setting up python3-tk:arm64 (3.13.9-1) ... 204s Setting up gcc (4:15.2.0-4ubuntu1) ... 204s Setting up dh-autoreconf (21) ... 204s Setting up python3-pil.imagetk:arm64 (11.3.0-1ubuntu2) ... 204s Setting up python3-rlpycairo (0.3.0-4) ... 205s Setting up python3-reportlab (4.4.4-2) ... 205s Setting up g++-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 205s Setting up debhelper (13.24.2ubuntu1) ... 205s Setting up g++ (4:15.2.0-4ubuntu1) ... 205s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 205s Setting up build-essential (12.12ubuntu1) ... 205s Setting up python3-fonttools (4.57.0-2build1) ... 206s Setting up python3-ufolib2 (0.17.1+dfsg1-1) ... 207s Setting up python3-matplotlib (3.10.7+dfsg1-1) ... 208s Setting up python3-seaborn (0.13.2-5) ... 208s Processing triggers for man-db (2.13.1-1) ... 211s Processing triggers for install-info (7.1.1-1ubuntu1) ... 211s Processing triggers for libc-bin (2.42-0ubuntu3) ... 211s Processing triggers for sgml-base (1.31+nmu1) ... 211s Setting up docutils-common (0.21.2+dfsg-2) ... 212s Setting up w3c-sgml-lib (1.3-3) ... 241s Setting up python3-biopython (1.85+dfsg-4) ... 242s Setting up python3-mdanalysis (2.9.0-12) ... 243s Processing triggers for sgml-base (1.31+nmu1) ... 243s Setting up python3-docutils (0.21.2+dfsg-2) ... 243s Setting up python3-pybtex-docutils (1.0.3-1) ... 243s Setting up python3-sphinx (8.2.3-1ubuntu2) ... 244s Setting up python3-sphinxcontrib.bibtex (2.6.2-1) ... 244s Setting up python3-sphinx-sitemap (2.6.0-1) ... 244s Setting up python3-sphinxcontrib.jquery (4.1-6) ... 244s Setting up python3-sphinx-rtd-theme (3.0.2+dfsg-3) ... 244s Setting up python3-msmb-theme (1.2.0-4) ... 246s autopkgtest [12:16:57]: test test-mdanalysis: [----------------------- 246s mdanalysis tests are not stable, see Bug#1108309 and https://github.com/MDAnalysis/mdanalysis/issues/5078 246s hence skipping tests 247s autopkgtest [12:16:58]: test test-mdanalysis: -----------------------] 247s autopkgtest [12:16:58]: test test-mdanalysis: - - - - - - - - - - results - - - - - - - - - - 247s test-mdanalysis FLAKY non-zero exit status 2 248s autopkgtest [12:16:59]: @@@@@@@@@@@@@@@@@@@@ summary 248s test-mdanalysis FLAKY non-zero exit status 2