0s autopkgtest [20:16:09]: starting date and time: 2025-10-20 20:16:09+0000 0s autopkgtest [20:16:09]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [20:16:09]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.peoy01tv/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:pytest,src:python-pluggy --apt-upgrade mdanalysis --timeout-short=300 --timeout-copy=20000 --timeout-test=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=pytest/8.4.2-1 python-pluggy/1.6.0-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-big --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-15.secgroup --name adt-resolute-arm64-mdanalysis-20251020-201609-juju-7f2275-prod-proposed-migration-environment-2-ffaca74c-98cb-48f6-a5f6-c72b299c937d --image adt/ubuntu-resolute-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 4s Creating nova instance adt-resolute-arm64-mdanalysis-20251020-201609-juju-7f2275-prod-proposed-migration-environment-2-ffaca74c-98cb-48f6-a5f6-c72b299c937d from image adt/ubuntu-resolute-arm64-server-20251020.img (UUID 53f7e888-0b33-40b7-be7f-09b2db152d64)... 60s autopkgtest [20:17:09]: testbed dpkg architecture: arm64 60s autopkgtest [20:17:09]: testbed apt version: 3.1.8ubuntu1 60s autopkgtest [20:17:09]: @@@@@@@@@@@@@@@@@@@@ test bed setup 61s autopkgtest [20:17:10]: testbed release detected to be: None 61s autopkgtest [20:17:10]: updating testbed package index (apt update) 62s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [83.3 kB] 62s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 62s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 62s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 62s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [59.3 kB] 62s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [646 kB] 63s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [14.3 kB] 63s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [5028 B] 63s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 Packages [115 kB] 63s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 Packages [43.8 kB] 63s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 Packages [409 kB] 63s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 Packages [5672 B] 63s Fetched 1382 kB in 1s (1143 kB/s) 64s Reading package lists... 65s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 65s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 65s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 65s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 66s Reading package lists... 66s Reading package lists... 66s Building dependency tree... 66s Reading state information... 66s Calculating upgrade... 67s The following packages will be upgraded: 67s libbrotli1 libjson-c5 python3-inflect python3-oauthlib python3-zipp 67s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 67s Need to get 512 kB of archives. 67s After this operation, 31.7 kB of additional disk space will be used. 67s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 libjson-c5 arm64 0.18+ds-1.1 [37.5 kB] 67s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 libbrotli1 arm64 1.1.0-2build6 [336 kB] 67s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-inflect all 7.5.0-1 [33.9 kB] 67s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-oauthlib all 3.3.1-1 [93.5 kB] 67s Get:5 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-zipp all 3.23.0-1 [10.4 kB] 68s dpkg-preconfigure: unable to re-open stdin: No such file or directory 68s Fetched 512 kB in 1s (842 kB/s) 68s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83364 files and directories currently installed.) 68s Preparing to unpack .../libjson-c5_0.18+ds-1.1_arm64.deb ... 68s Unpacking libjson-c5:arm64 (0.18+ds-1.1) over (0.18+ds-1) ... 68s Preparing to unpack .../libbrotli1_1.1.0-2build6_arm64.deb ... 68s Unpacking libbrotli1:arm64 (1.1.0-2build6) over (1.1.0-2build5) ... 68s Preparing to unpack .../python3-inflect_7.5.0-1_all.deb ... 69s Unpacking python3-inflect (7.5.0-1) over (7.3.1-2) ... 69s Preparing to unpack .../python3-oauthlib_3.3.1-1_all.deb ... 69s Unpacking python3-oauthlib (3.3.1-1) over (3.2.2-3) ... 69s Preparing to unpack .../python3-zipp_3.23.0-1_all.deb ... 69s Unpacking python3-zipp (3.23.0-1) over (3.21.0-1) ... 69s Setting up libbrotli1:arm64 (1.1.0-2build6) ... 69s Setting up python3-zipp (3.23.0-1) ... 69s Setting up python3-inflect (7.5.0-1) ... 69s Setting up python3-oauthlib (3.3.1-1) ... 70s Setting up libjson-c5:arm64 (0.18+ds-1.1) ... 70s Processing triggers for libc-bin (2.42-0ubuntu3) ... 70s autopkgtest [20:17:19]: upgrading testbed (apt dist-upgrade and autopurge) 70s Reading package lists... 70s Building dependency tree... 70s Reading state information... 71s Calculating upgrade... 71s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 71s Reading package lists... 71s Building dependency tree... 71s Reading state information... 72s Solving dependencies... 72s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 75s autopkgtest [20:17:24]: testbed running kernel: Linux 6.17.0-5-generic #5-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 22 09:50:31 UTC 2025 75s autopkgtest [20:17:24]: @@@@@@@@@@@@@@@@@@@@ apt-source mdanalysis 82s Get:1 http://ftpmaster.internal/ubuntu resolute/universe mdanalysis 2.9.0-12 (dsc) [2945 B] 82s Get:2 http://ftpmaster.internal/ubuntu resolute/universe mdanalysis 2.9.0-12 (tar) [61.0 MB] 82s Get:3 http://ftpmaster.internal/ubuntu resolute/universe mdanalysis 2.9.0-12 (diff) [13.9 kB] 82s gpgv: Signature made Thu Jul 10 09:20:14 2025 UTC 82s gpgv: using RSA key 23C9A93E585819E9126D0A36573EF1E4BD5A01FA 82s gpgv: Can't check signature: No public key 82s dpkg-source: warning: cannot verify inline signature for ./mdanalysis_2.9.0-12.dsc: no acceptable signature found 83s autopkgtest [20:17:32]: testing package mdanalysis version 2.9.0-12 84s autopkgtest [20:17:33]: build not needed 90s autopkgtest [20:17:39]: test test-mdanalysis: preparing testbed 90s Reading package lists... 91s Building dependency tree... 91s Reading state information... 91s Solving dependencies... 91s The following NEW packages will be installed: 91s autoconf automake autopoint autotools-dev blt build-essential cpp cpp-15 91s cpp-15-aarch64-linux-gnu cpp-aarch64-linux-gnu cython3 debhelper debugedit 91s dh-autoreconf dh-python dh-strip-nondeterminism docutils-common dwz 91s fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 91s fonts-lato fonts-lyx fonts-mathjax fonts-urw-base35 g++ g++-15 91s g++-15-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-15 91s gcc-15-aarch64-linux-gnu gcc-aarch64-linux-gnu gettext intltool-debian 91s libaec0 libarchive-zip-perl libasan8 libblas3 libcairo2 libcc1-0 91s libdebhelper-perl libdeflate0 libexpat1-dev libfile-stripnondeterminism-perl 91s libfontconfig1 libfontenc1 libgcc-15-dev libgfortran5 libgomp1 91s libgraphite2-3 libharfbuzz0b libhdf5-310 libhdf5-hl-310 libhwasan0 91s libimagequant0 libisl23 libitm1 libjbig0 libjpeg-turbo8 libjpeg8 91s libjs-jquery libjs-jquery-ui libjs-mathjax libjs-sphinxdoc libjs-underscore 91s libjson-perl liblapack3 liblcms2-2 liblerc4 liblsan0 liblzf1 libmpc3 91s libnetcdf22 libopenjp2-7 libpixman-1-0 libpython3-all-dev libpython3-dev 91s libpython3.13-dev libqhull-r8.0 libraqm0 libsharpyuv0 libstdc++-15-dev 91s libsz2 libtcl8.6 libtiff6 libtk8.6 libtool libtsan2 libubsan1 libwebp7 91s libwebpdemux2 libwebpmux3 libxcb-render0 libxcb-shm0 libxft2 libxrender1 91s libxslt1.1 libxss1 libzopfli1 m4 po-debconf pybuild-plugin-pyproject 91s python-matplotlib-data python-mdanalysis-doc python3-alabaster python3-all 91s python3-all-dev python3-biopython python3-brotli python3-build python3-cairo 91s python3-cftime python3-charset-normalizer python3-citeproc python3-contourpy 91s python3-cycler python3-dateutil python3-decorator python3-defusedxml 91s python3-dev python3-docutils python3-duecredit python3-fasteners 91s python3-filelock python3-fonttools python3-freetype python3-fs 91s python3-griddataformats python3-gsd python3-h5py python3-h5py-serial 91s python3-hypothesis python3-imagesize python3-iniconfig python3-installer 91s python3-joblib python3-kiwisolver python3-latexcodec python3-looseversion 91s python3-lxml python3-lz4 python3-matplotlib python3-mda-xdrlib 91s python3-mdanalysis python3-mmtf python3-monotonic python3-mpmath 91s python3-mrcfile python3-msgpack python3-msmb-theme python3-netcdf4 91s python3-networkx python3-numpy python3-numpy-dev python3-packaging 91s python3-pandas python3-pandas-lib python3-pil python3-pil.imagetk 91s python3-platformdirs python3-pluggy python3-pybtex python3-pybtex-docutils 91s python3-pyproject-hooks python3-pytest python3-pytz python3-reportlab 91s python3-rlpycairo python3-roman python3-scipy python3-seaborn python3-six 91s python3-sklearn python3-sklearn-lib python3-snowballstemmer 91s python3-sortedcontainers python3-sphinx python3-sphinx-rtd-theme 91s python3-sphinx-sitemap python3-sphinxcontrib.bibtex 91s python3-sphinxcontrib.jquery python3-sympy python3-threadpoolctl python3-tk 91s python3-tqdm python3-ufolib2 python3-wheel python3-zopfli python3.13-dev 91s python3.13-tk sgml-base sphinx-common sphinx-rtd-theme-common tk8.6-blt2.5 91s unicode-data w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core 91s zlib1g-dev 91s 0 upgraded, 203 newly installed, 0 to remove and 0 not upgraded. 91s Need to get 221 MB of archives. 91s After this operation, 918 MB of additional disk space will be used. 91s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-lato all 2.015-1 [2781 kB] 92s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-numpy-dev arm64 1:2.2.4+ds-1ubuntu1 [146 kB] 92s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 libblas3 arm64 3.12.1-6build1 [186 kB] 92s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 libgfortran5 arm64 15.2.0-5ubuntu1 [450 kB] 92s Get:5 http://ftpmaster.internal/ubuntu resolute/main arm64 liblapack3 arm64 3.12.1-6build1 [2340 kB] 92s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-numpy arm64 1:2.2.4+ds-1ubuntu1 [3986 kB] 93s Get:7 http://ftpmaster.internal/ubuntu resolute/main arm64 m4 arm64 1.4.19-8 [244 kB] 93s Get:8 http://ftpmaster.internal/ubuntu resolute/main arm64 autoconf all 2.72-3.1ubuntu1 [384 kB] 93s Get:9 http://ftpmaster.internal/ubuntu resolute/main arm64 autotools-dev all 20240727.1 [43.4 kB] 93s Get:10 http://ftpmaster.internal/ubuntu resolute/main arm64 automake all 1:1.17-4ubuntu1 [572 kB] 93s Get:11 http://ftpmaster.internal/ubuntu resolute/main arm64 autopoint all 0.23.1-2build2 [619 kB] 93s Get:12 http://ftpmaster.internal/ubuntu resolute/main arm64 libtcl8.6 arm64 8.6.17+dfsg-1 [1024 kB] 93s Get:13 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 93s Get:14 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 93s Get:15 http://ftpmaster.internal/ubuntu resolute/main arm64 libfontenc1 arm64 1:1.1.8-1build1 [13.9 kB] 93s Get:16 http://ftpmaster.internal/ubuntu resolute/main arm64 x11-common all 1:7.7+24ubuntu1 [22.4 kB] 93s Get:17 http://ftpmaster.internal/ubuntu resolute/main arm64 xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] 93s Get:18 http://ftpmaster.internal/ubuntu resolute/main arm64 xfonts-utils arm64 1:7.7+7 [95.6 kB] 93s Get:19 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-urw-base35 all 20200910-8 [11.0 MB] 93s Get:20 http://ftpmaster.internal/ubuntu resolute/main arm64 fontconfig-config arm64 2.15.0-2.3ubuntu1 [38.1 kB] 93s Get:21 http://ftpmaster.internal/ubuntu resolute/main arm64 libfontconfig1 arm64 2.15.0-2.3ubuntu1 [144 kB] 93s Get:22 http://ftpmaster.internal/ubuntu resolute/main arm64 libxrender1 arm64 1:0.9.12-1 [19.5 kB] 93s Get:23 http://ftpmaster.internal/ubuntu resolute/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB] 93s Get:24 http://ftpmaster.internal/ubuntu resolute/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B] 93s Get:25 http://ftpmaster.internal/ubuntu resolute/main arm64 libtk8.6 arm64 8.6.17-1 [811 kB] 93s Get:26 http://ftpmaster.internal/ubuntu resolute/main arm64 tk8.6-blt2.5 arm64 2.5.3+dfsg-8 [624 kB] 93s Get:27 http://ftpmaster.internal/ubuntu resolute/main arm64 blt arm64 2.5.3+dfsg-8 [4824 B] 93s Get:28 http://ftpmaster.internal/ubuntu resolute/main arm64 libisl23 arm64 0.27-1 [676 kB] 93s Get:29 http://ftpmaster.internal/ubuntu resolute/main arm64 libmpc3 arm64 1.3.1-1build3 [58.9 kB] 93s Get:30 http://ftpmaster.internal/ubuntu resolute/main arm64 cpp-15-aarch64-linux-gnu arm64 15.2.0-5ubuntu1 [11.7 MB] 94s Get:31 http://ftpmaster.internal/ubuntu resolute/main arm64 cpp-15 arm64 15.2.0-5ubuntu1 [1028 B] 94s Get:32 http://ftpmaster.internal/ubuntu resolute/main arm64 cpp-aarch64-linux-gnu arm64 4:15.2.0-4ubuntu1 [5736 B] 94s Get:33 http://ftpmaster.internal/ubuntu resolute/main arm64 cpp arm64 4:15.2.0-4ubuntu1 [22.4 kB] 94s Get:34 http://ftpmaster.internal/ubuntu resolute/main arm64 libcc1-0 arm64 15.2.0-5ubuntu1 [49.2 kB] 94s Get:35 http://ftpmaster.internal/ubuntu resolute/main arm64 libgomp1 arm64 15.2.0-5ubuntu1 [148 kB] 94s Get:36 http://ftpmaster.internal/ubuntu resolute/main arm64 libitm1 arm64 15.2.0-5ubuntu1 [28.1 kB] 94s Get:37 http://ftpmaster.internal/ubuntu resolute/main arm64 libasan8 arm64 15.2.0-5ubuntu1 [2922 kB] 94s Get:38 http://ftpmaster.internal/ubuntu resolute/main arm64 liblsan0 arm64 15.2.0-5ubuntu1 [1316 kB] 94s Get:39 http://ftpmaster.internal/ubuntu resolute/main arm64 libtsan2 arm64 15.2.0-5ubuntu1 [2689 kB] 94s Get:40 http://ftpmaster.internal/ubuntu resolute/main arm64 libubsan1 arm64 15.2.0-5ubuntu1 [1176 kB] 94s Get:41 http://ftpmaster.internal/ubuntu resolute/main arm64 libhwasan0 arm64 15.2.0-5ubuntu1 [1639 kB] 94s Get:42 http://ftpmaster.internal/ubuntu resolute/main arm64 libgcc-15-dev arm64 15.2.0-5ubuntu1 [2601 kB] 94s Get:43 http://ftpmaster.internal/ubuntu resolute/main arm64 gcc-15-aarch64-linux-gnu arm64 15.2.0-5ubuntu1 [23.1 MB] 95s Get:44 http://ftpmaster.internal/ubuntu resolute/main arm64 gcc-15 arm64 15.2.0-5ubuntu1 [512 kB] 95s Get:45 http://ftpmaster.internal/ubuntu resolute/main arm64 gcc-aarch64-linux-gnu arm64 4:15.2.0-4ubuntu1 [1206 B] 95s Get:46 http://ftpmaster.internal/ubuntu resolute/main arm64 gcc arm64 4:15.2.0-4ubuntu1 [5016 B] 95s Get:47 http://ftpmaster.internal/ubuntu resolute/main arm64 libstdc++-15-dev arm64 15.2.0-5ubuntu1 [2545 kB] 95s Get:48 http://ftpmaster.internal/ubuntu resolute/main arm64 g++-15-aarch64-linux-gnu arm64 15.2.0-5ubuntu1 [13.2 MB] 95s Get:49 http://ftpmaster.internal/ubuntu resolute/main arm64 g++-15 arm64 15.2.0-5ubuntu1 [23.7 kB] 95s Get:50 http://ftpmaster.internal/ubuntu resolute/main arm64 g++-aarch64-linux-gnu arm64 4:15.2.0-4ubuntu1 [956 B] 95s Get:51 http://ftpmaster.internal/ubuntu resolute/main arm64 g++ arm64 4:15.2.0-4ubuntu1 [1080 B] 95s Get:52 http://ftpmaster.internal/ubuntu resolute/main arm64 build-essential arm64 12.12ubuntu1 [5082 B] 95s Get:53 http://ftpmaster.internal/ubuntu resolute/universe arm64 cython3 arm64 3.0.11+dfsg-2ubuntu4 [3321 kB] 95s Get:54 http://ftpmaster.internal/ubuntu resolute/main arm64 libdebhelper-perl all 13.24.2ubuntu1 [95.7 kB] 95s Get:55 http://ftpmaster.internal/ubuntu resolute/main arm64 libtool all 2.5.4-4build1 [169 kB] 95s Get:56 http://ftpmaster.internal/ubuntu resolute/main arm64 dh-autoreconf all 21 [12.5 kB] 95s Get:57 http://ftpmaster.internal/ubuntu resolute/main arm64 libarchive-zip-perl all 1.68-1 [90.2 kB] 95s Get:58 http://ftpmaster.internal/ubuntu resolute/main arm64 libfile-stripnondeterminism-perl all 1.14.2-1 [20.4 kB] 96s Get:59 http://ftpmaster.internal/ubuntu resolute/main arm64 dh-strip-nondeterminism all 1.14.2-1 [5098 B] 96s Get:60 http://ftpmaster.internal/ubuntu resolute/main arm64 debugedit arm64 1:5.2-3 [49.1 kB] 96s Get:61 http://ftpmaster.internal/ubuntu resolute/main arm64 dwz arm64 0.16-2 [113 kB] 96s Get:62 http://ftpmaster.internal/ubuntu resolute/main arm64 gettext arm64 0.23.1-2build2 [1026 kB] 96s Get:63 http://ftpmaster.internal/ubuntu resolute/main arm64 intltool-debian all 0.35.0+20060710.6 [23.2 kB] 96s Get:64 http://ftpmaster.internal/ubuntu resolute/main arm64 po-debconf all 1.0.21+nmu1 [233 kB] 96s Get:65 http://ftpmaster.internal/ubuntu resolute/main arm64 debhelper all 13.24.2ubuntu1 [896 kB] 96s Get:66 http://ftpmaster.internal/ubuntu resolute/universe arm64 dh-python all 6.20250414 [119 kB] 96s Get:67 http://ftpmaster.internal/ubuntu resolute/main arm64 sgml-base all 1.31+nmu1 [11.0 kB] 96s Get:68 http://ftpmaster.internal/ubuntu resolute/main arm64 xml-core all 0.19 [20.3 kB] 96s Get:69 http://ftpmaster.internal/ubuntu resolute/main arm64 docutils-common all 0.21.2+dfsg-2 [131 kB] 96s Get:70 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 96s Get:71 http://ftpmaster.internal/ubuntu resolute/universe arm64 fonts-lyx all 2.4.4-1 [171 kB] 96s Get:72 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 96s Get:73 http://ftpmaster.internal/ubuntu resolute/universe arm64 libaec0 arm64 1.1.3-1 [22.0 kB] 96s Get:74 http://ftpmaster.internal/ubuntu resolute/main arm64 libpixman-1-0 arm64 0.44.0-3 [197 kB] 96s Get:75 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-render0 arm64 1.17.0-2build1 [18.1 kB] 96s Get:76 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-shm0 arm64 1.17.0-2build1 [6234 B] 96s Get:77 http://ftpmaster.internal/ubuntu resolute/main arm64 libcairo2 arm64 1.18.4-1build1 [592 kB] 96s Get:78 http://ftpmaster.internal/ubuntu resolute/main arm64 libdeflate0 arm64 1.23-2 [46.4 kB] 96s Get:79 http://ftpmaster.internal/ubuntu resolute/main arm64 libexpat1-dev arm64 2.7.1-2 [128 kB] 96s Get:80 http://ftpmaster.internal/ubuntu resolute/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB] 96s Get:81 http://ftpmaster.internal/ubuntu resolute/main arm64 libharfbuzz0b arm64 12.1.0-1 [523 kB] 96s Get:82 http://ftpmaster.internal/ubuntu resolute/universe arm64 libsz2 arm64 1.1.3-1 [5254 B] 96s Get:83 http://ftpmaster.internal/ubuntu resolute/universe arm64 libhdf5-310 arm64 1.14.5+repack-3build1 [1331 kB] 96s Get:84 http://ftpmaster.internal/ubuntu resolute/universe arm64 libhdf5-hl-310 arm64 1.14.5+repack-3build1 [59.8 kB] 96s Get:85 http://ftpmaster.internal/ubuntu resolute/main arm64 libimagequant0 arm64 2.18.0-1build1 [37.1 kB] 96s Get:86 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg-turbo8 arm64 2.1.5-4ubuntu2 [165 kB] 96s Get:87 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 96s Get:88 http://ftpmaster.internal/ubuntu resolute/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 96s Get:89 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 96s Get:90 http://ftpmaster.internal/ubuntu resolute/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 96s Get:91 http://ftpmaster.internal/ubuntu resolute/main arm64 libjs-sphinxdoc all 8.2.3-1ubuntu2 [28.0 kB] 96s Get:92 http://ftpmaster.internal/ubuntu resolute/main arm64 libjson-perl all 4.10000-1 [81.9 kB] 96s Get:93 http://ftpmaster.internal/ubuntu resolute/main arm64 liblcms2-2 arm64 2.16-2 [170 kB] 96s Get:94 http://ftpmaster.internal/ubuntu resolute/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB] 96s Get:95 http://ftpmaster.internal/ubuntu resolute/universe arm64 liblzf1 arm64 3.6-4 [7426 B] 96s Get:96 http://ftpmaster.internal/ubuntu resolute/universe arm64 libnetcdf22 arm64 1:4.9.3-1build1 [555 kB] 96s Get:97 http://ftpmaster.internal/ubuntu resolute/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu2 [899 kB] 96s Get:98 http://ftpmaster.internal/ubuntu resolute/main arm64 libpython3.13-dev arm64 3.13.7-1 [6091 kB] 96s Get:99 http://ftpmaster.internal/ubuntu resolute/main arm64 libpython3-dev arm64 3.13.7-1 [10.8 kB] 96s Get:100 http://ftpmaster.internal/ubuntu resolute/main arm64 libpython3-all-dev arm64 3.13.7-1 [908 B] 96s Get:101 http://ftpmaster.internal/ubuntu resolute/universe arm64 libqhull-r8.0 arm64 2020.2-6build1 [189 kB] 96s Get:102 http://ftpmaster.internal/ubuntu resolute/main arm64 libraqm0 arm64 0.10.3-1 [15.0 kB] 96s Get:103 http://ftpmaster.internal/ubuntu resolute/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB] 96s Get:104 http://ftpmaster.internal/ubuntu resolute/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB] 97s Get:105 http://ftpmaster.internal/ubuntu resolute/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB] 97s Get:106 http://ftpmaster.internal/ubuntu resolute/main arm64 libtiff6 arm64 4.7.0-3ubuntu3 [196 kB] 97s Get:107 http://ftpmaster.internal/ubuntu resolute/main arm64 libwebpdemux2 arm64 1.5.0-0.1 [12.5 kB] 97s Get:108 http://ftpmaster.internal/ubuntu resolute/main arm64 libwebpmux3 arm64 1.5.0-0.1 [25.4 kB] 97s Get:109 http://ftpmaster.internal/ubuntu resolute/main arm64 libxslt1.1 arm64 1.1.43-0.1 [171 kB] 97s Get:110 http://ftpmaster.internal/ubuntu resolute/universe arm64 libzopfli1 arm64 1.0.3-3 [108 kB] 97s Get:111 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-packaging all 25.0-1 [52.8 kB] 97s Get:112 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pyproject-hooks all 1.2.0-1 [10.2 kB] 97s Get:113 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-wheel all 0.46.1-2 [22.1 kB] 97s Get:114 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-build all 1.2.2-2 [31.0 kB] 97s Get:115 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-installer all 0.7.0+dfsg1-3 [17.4 kB] 97s Get:116 http://ftpmaster.internal/ubuntu resolute/universe arm64 pybuild-plugin-pyproject all 6.20250414 [1728 B] 97s Get:117 http://ftpmaster.internal/ubuntu resolute/universe arm64 python-matplotlib-data all 3.10.1+dfsg1-4 [2930 kB] 97s Get:118 http://ftpmaster.internal/ubuntu resolute/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 98s Get:119 http://ftpmaster.internal/ubuntu resolute/universe arm64 python-mdanalysis-doc all 2.9.0-12 [3459 kB] 98s Get:120 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-all arm64 3.13.7-1 [884 B] 98s Get:121 http://ftpmaster.internal/ubuntu resolute/main arm64 python3.13-dev arm64 3.13.7-1 [508 kB] 98s Get:122 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-dev arm64 3.13.7-1 [26.6 kB] 98s Get:123 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-all-dev arm64 3.13.7-1 [906 B] 98s Get:124 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-charset-normalizer arm64 3.4.2-1 [125 kB] 98s Get:125 http://ftpmaster.internal/ubuntu resolute/main arm64 python3.13-tk arm64 3.13.7-1 [108 kB] 98s Get:126 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-tk arm64 3.13.5-1 [9916 B] 98s Get:127 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pil.imagetk arm64 11.3.0-1ubuntu1 [9878 B] 98s Get:128 http://ftpmaster.internal/ubuntu resolute/main arm64 libopenjp2-7 arm64 2.5.3-2.1 [179 kB] 98s Get:129 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-pil arm64 11.3.0-1ubuntu1 [483 kB] 99s Get:130 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-cairo arm64 1.27.0-2build1 [141 kB] 99s Get:131 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-freetype all 2.5.1-1 [92.3 kB] 99s Get:132 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-rlpycairo all 0.3.0-3 [9130 B] 99s Get:133 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-reportlab all 4.4.2-1 [1145 kB] 99s Get:134 http://ftpmaster.internal/ubuntu resolute/universe arm64 w3c-sgml-lib all 1.3-3 [280 kB] 99s Get:135 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-biopython arm64 1.85+dfsg-4 [1710 kB] 99s Get:136 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-brotli arm64 1.1.0-2build6 [343 kB] 99s Get:137 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-cftime arm64 1.6.4-2 [208 kB] 99s Get:138 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-lxml arm64 6.0.1-1 [1428 kB] 99s Get:139 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-citeproc all 0.8.2-1 [99.9 kB] 99s Get:140 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-contourpy arm64 1.3.1-1build1 [182 kB] 99s Get:141 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-cycler all 0.12.1-1 [9716 B] 99s Get:142 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-dateutil all 2.9.0-4 [80.3 kB] 99s Get:143 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-decorator all 5.2.1-2 [28.1 kB] 99s Get:144 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-defusedxml all 0.7.1-3 [42.2 kB] 99s Get:145 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-roman all 5.1-1 [10.6 kB] 99s Get:146 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-docutils all 0.21.2+dfsg-2 [409 kB] 99s Get:147 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-looseversion all 1.3.0-3 [8354 B] 99s Get:148 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-duecredit all 0.10.2-2 [66.0 kB] 99s Get:149 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-monotonic all 1.6-3 [5344 B] 99s Get:150 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-fasteners all 0.18-2 [12.5 kB] 99s Get:151 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-filelock all 3.18.0-1 [13.0 kB] 99s Get:152 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-platformdirs all 4.3.7-1 [16.9 kB] 99s Get:153 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-fs all 2.4.16-7 [90.8 kB] 99s Get:154 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-lz4 arm64 4.4.0+dfsg-2 [27.1 kB] 99s Get:155 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-scipy arm64 1.15.3-1 [15.8 MB] 100s Get:156 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-mpmath all 1.3.0-1 [425 kB] 100s Get:157 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-sympy all 1.13.3-5 [4229 kB] 100s Get:158 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-ufolib2 all 0.17.1+dfsg1-1 [33.5 kB] 100s Get:159 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-zopfli arm64 0.2.3.post1-1 [10.7 kB] 100s Get:160 http://ftpmaster.internal/ubuntu resolute/universe arm64 unicode-data all 16.0.0-1 [9513 kB] 100s Get:161 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-fonttools arm64 4.57.0-1 [1453 kB] 100s Get:162 http://ftpmaster.internal/ubuntu resolute/main arm64 sphinx-rtd-theme-common all 3.0.2+dfsg-3 [1013 kB] 100s Get:163 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-mrcfile all 1.5.4-2 [116 kB] 100s Get:164 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-griddataformats all 1.0.2-2 [2107 kB] 100s Get:165 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-gsd arm64 3.4.2-2build1 [209 kB] 100s Get:166 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-h5py-serial arm64 3.13.0-1ubuntu1 [1123 kB] 100s Get:167 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-h5py all 3.13.0-1ubuntu1 [8230 B] 100s Get:168 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-sortedcontainers all 2.4.0-2 [27.6 kB] 100s Get:169 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-hypothesis all 6.130.5-2 [341 kB] 100s Get:170 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-imagesize all 1.4.1-1 [6844 B] 100s Get:171 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-iniconfig all 1.1.1-2 [6024 B] 100s Get:172 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-joblib all 1.4.2-4 [205 kB] 100s Get:173 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-kiwisolver arm64 1.4.7-3build2 [60.7 kB] 100s Get:174 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-latexcodec all 3.0.0-1 [16.6 kB] 100s Get:175 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-matplotlib arm64 3.10.1+dfsg1-4 [18.0 MB] 101s Get:176 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-mda-xdrlib all 0.2.0-3 [11.4 kB] 101s Get:177 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-msgpack arm64 1.0.3-3build4 [82.7 kB] 101s Get:178 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-mmtf all 1.1.3-1 [16.2 kB] 101s Get:179 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-threadpoolctl all 3.1.0-1 [21.3 kB] 101s Get:180 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-tqdm all 4.67.1-5 [92.1 kB] 101s Get:181 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-mdanalysis arm64 2.9.0-12 [3992 kB] 101s Get:182 http://ftpmaster.internal/ubuntu resolute/main arm64 sphinx-common all 8.2.3-1ubuntu2 [656 kB] 101s Get:183 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-alabaster all 0.7.16-0.1 [18.5 kB] 101s Get:184 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-snowballstemmer all 2.2.0-4build1 [59.8 kB] 101s Get:185 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-sphinx all 8.2.3-1ubuntu2 [482 kB] 101s Get:186 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-sphinxcontrib.jquery all 4.1-6 [6856 B] 101s Get:187 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-sphinx-rtd-theme all 3.0.2+dfsg-3 [23.5 kB] 101s Get:188 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-msmb-theme all 1.2.0-4 [35.4 kB] 101s Get:189 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-netcdf4 arm64 1.7.2-1build4 [587 kB] 101s Get:190 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-networkx all 3.2.1-4ubuntu1 [11.5 MB] 101s Get:191 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-pytz all 2025.2-3 [163 kB] 101s Get:192 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pandas-lib arm64 2.2.3+dfsg-9 [4579 kB] 101s Get:193 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pandas all 2.2.3+dfsg-9 [3112 kB] 101s Get:194 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 python3-pluggy all 1.6.0-1 [21.0 kB] 101s Get:195 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-six all 1.17.0-1 [13.2 kB] 101s Get:196 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pybtex all 0.24.0-4 [70.0 kB] 101s Get:197 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pybtex-docutils all 1.0.3-1 [7374 B] 101s Get:198 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 python3-pytest all 8.4.2-1 [268 kB] 101s Get:199 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-seaborn all 0.13.2-5 [225 kB] 101s Get:200 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-sklearn-lib arm64 1.4.2+dfsg-8 [4109 kB] 102s Get:201 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-sklearn all 1.4.2+dfsg-8 [2258 kB] 102s Get:202 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-sphinx-sitemap all 2.6.0-1 [6674 B] 102s Get:203 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-sphinxcontrib.bibtex all 2.6.2-1 [25.2 kB] 102s Fetched 221 MB in 10s (21.1 MB/s) 102s Selecting previously unselected package fonts-lato. 102s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83374 files and directories currently installed.) 102s Preparing to unpack .../000-fonts-lato_2.015-1_all.deb ... 102s Unpacking fonts-lato (2.015-1) ... 103s Selecting previously unselected package python3-numpy-dev:arm64. 103s Preparing to unpack .../001-python3-numpy-dev_1%3a2.2.4+ds-1ubuntu1_arm64.deb ... 103s Unpacking python3-numpy-dev:arm64 (1:2.2.4+ds-1ubuntu1) ... 103s Selecting previously unselected package libblas3:arm64. 103s Preparing to unpack .../002-libblas3_3.12.1-6build1_arm64.deb ... 103s Unpacking libblas3:arm64 (3.12.1-6build1) ... 103s Selecting previously unselected package libgfortran5:arm64. 103s Preparing to unpack .../003-libgfortran5_15.2.0-5ubuntu1_arm64.deb ... 103s Unpacking libgfortran5:arm64 (15.2.0-5ubuntu1) ... 103s Selecting previously unselected package liblapack3:arm64. 103s Preparing to unpack .../004-liblapack3_3.12.1-6build1_arm64.deb ... 103s Unpacking liblapack3:arm64 (3.12.1-6build1) ... 103s Selecting previously unselected package python3-numpy. 103s Preparing to unpack .../005-python3-numpy_1%3a2.2.4+ds-1ubuntu1_arm64.deb ... 103s Unpacking python3-numpy (1:2.2.4+ds-1ubuntu1) ... 103s Selecting previously unselected package m4. 103s Preparing to unpack .../006-m4_1.4.19-8_arm64.deb ... 103s Unpacking m4 (1.4.19-8) ... 103s Selecting previously unselected package autoconf. 103s Preparing to unpack .../007-autoconf_2.72-3.1ubuntu1_all.deb ... 103s Unpacking autoconf (2.72-3.1ubuntu1) ... 103s Selecting previously unselected package autotools-dev. 103s Preparing to unpack .../008-autotools-dev_20240727.1_all.deb ... 103s Unpacking autotools-dev (20240727.1) ... 103s Selecting previously unselected package automake. 103s Preparing to unpack .../009-automake_1%3a1.17-4ubuntu1_all.deb ... 103s Unpacking automake (1:1.17-4ubuntu1) ... 103s Selecting previously unselected package autopoint. 103s Preparing to unpack .../010-autopoint_0.23.1-2build2_all.deb ... 103s Unpacking autopoint (0.23.1-2build2) ... 103s Selecting previously unselected package libtcl8.6:arm64. 104s Preparing to unpack .../011-libtcl8.6_8.6.17+dfsg-1_arm64.deb ... 104s Unpacking libtcl8.6:arm64 (8.6.17+dfsg-1) ... 104s Selecting previously unselected package fonts-dejavu-mono. 104s Preparing to unpack .../012-fonts-dejavu-mono_2.37-8_all.deb ... 104s Unpacking fonts-dejavu-mono (2.37-8) ... 104s Selecting previously unselected package fonts-dejavu-core. 104s Preparing to unpack .../013-fonts-dejavu-core_2.37-8_all.deb ... 104s Unpacking fonts-dejavu-core (2.37-8) ... 104s Selecting previously unselected package libfontenc1:arm64. 104s Preparing to unpack .../014-libfontenc1_1%3a1.1.8-1build1_arm64.deb ... 104s Unpacking libfontenc1:arm64 (1:1.1.8-1build1) ... 104s Selecting previously unselected package x11-common. 104s Preparing to unpack .../015-x11-common_1%3a7.7+24ubuntu1_all.deb ... 104s Unpacking x11-common (1:7.7+24ubuntu1) ... 104s Selecting previously unselected package xfonts-encodings. 104s Preparing to unpack .../016-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ... 104s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ... 104s Selecting previously unselected package xfonts-utils. 104s Preparing to unpack .../017-xfonts-utils_1%3a7.7+7_arm64.deb ... 104s Unpacking xfonts-utils (1:7.7+7) ... 104s Selecting previously unselected package fonts-urw-base35. 104s Preparing to unpack .../018-fonts-urw-base35_20200910-8_all.deb ... 104s Unpacking fonts-urw-base35 (20200910-8) ... 104s Selecting previously unselected package fontconfig-config. 104s Preparing to unpack .../019-fontconfig-config_2.15.0-2.3ubuntu1_arm64.deb ... 105s Unpacking fontconfig-config (2.15.0-2.3ubuntu1) ... 105s Selecting previously unselected package libfontconfig1:arm64. 105s Preparing to unpack .../020-libfontconfig1_2.15.0-2.3ubuntu1_arm64.deb ... 105s Unpacking libfontconfig1:arm64 (2.15.0-2.3ubuntu1) ... 105s Selecting previously unselected package libxrender1:arm64. 105s Preparing to unpack .../021-libxrender1_1%3a0.9.12-1_arm64.deb ... 105s Unpacking libxrender1:arm64 (1:0.9.12-1) ... 105s Selecting previously unselected package libxft2:arm64. 105s Preparing to unpack .../022-libxft2_2.3.6-1build1_arm64.deb ... 105s Unpacking libxft2:arm64 (2.3.6-1build1) ... 105s Selecting previously unselected package libxss1:arm64. 105s Preparing to unpack .../023-libxss1_1%3a1.2.3-1build3_arm64.deb ... 105s Unpacking libxss1:arm64 (1:1.2.3-1build3) ... 105s Selecting previously unselected package libtk8.6:arm64. 105s Preparing to unpack .../024-libtk8.6_8.6.17-1_arm64.deb ... 105s Unpacking libtk8.6:arm64 (8.6.17-1) ... 105s Selecting previously unselected package tk8.6-blt2.5. 105s Preparing to unpack .../025-tk8.6-blt2.5_2.5.3+dfsg-8_arm64.deb ... 105s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-8) ... 105s Selecting previously unselected package blt. 105s Preparing to unpack .../026-blt_2.5.3+dfsg-8_arm64.deb ... 105s Unpacking blt (2.5.3+dfsg-8) ... 105s Selecting previously unselected package libisl23:arm64. 105s Preparing to unpack .../027-libisl23_0.27-1_arm64.deb ... 105s Unpacking libisl23:arm64 (0.27-1) ... 105s Selecting previously unselected package libmpc3:arm64. 105s Preparing to unpack .../028-libmpc3_1.3.1-1build3_arm64.deb ... 105s Unpacking libmpc3:arm64 (1.3.1-1build3) ... 105s Selecting previously unselected package cpp-15-aarch64-linux-gnu. 105s Preparing to unpack .../029-cpp-15-aarch64-linux-gnu_15.2.0-5ubuntu1_arm64.deb ... 105s Unpacking cpp-15-aarch64-linux-gnu (15.2.0-5ubuntu1) ... 105s Selecting previously unselected package cpp-15. 105s Preparing to unpack .../030-cpp-15_15.2.0-5ubuntu1_arm64.deb ... 105s Unpacking cpp-15 (15.2.0-5ubuntu1) ... 105s Selecting previously unselected package cpp-aarch64-linux-gnu. 105s Preparing to unpack .../031-cpp-aarch64-linux-gnu_4%3a15.2.0-4ubuntu1_arm64.deb ... 105s Unpacking cpp-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 105s Selecting previously unselected package cpp. 105s Preparing to unpack .../032-cpp_4%3a15.2.0-4ubuntu1_arm64.deb ... 105s Unpacking cpp (4:15.2.0-4ubuntu1) ... 105s Selecting previously unselected package libcc1-0:arm64. 105s Preparing to unpack .../033-libcc1-0_15.2.0-5ubuntu1_arm64.deb ... 105s Unpacking libcc1-0:arm64 (15.2.0-5ubuntu1) ... 105s Selecting previously unselected package libgomp1:arm64. 105s Preparing to unpack .../034-libgomp1_15.2.0-5ubuntu1_arm64.deb ... 105s Unpacking libgomp1:arm64 (15.2.0-5ubuntu1) ... 105s Selecting previously unselected package libitm1:arm64. 106s Preparing to unpack .../035-libitm1_15.2.0-5ubuntu1_arm64.deb ... 106s Unpacking libitm1:arm64 (15.2.0-5ubuntu1) ... 106s Selecting previously unselected package libasan8:arm64. 106s Preparing to unpack .../036-libasan8_15.2.0-5ubuntu1_arm64.deb ... 106s Unpacking libasan8:arm64 (15.2.0-5ubuntu1) ... 106s Selecting previously unselected package liblsan0:arm64. 106s Preparing to unpack .../037-liblsan0_15.2.0-5ubuntu1_arm64.deb ... 106s Unpacking liblsan0:arm64 (15.2.0-5ubuntu1) ... 106s Selecting previously unselected package libtsan2:arm64. 106s Preparing to unpack .../038-libtsan2_15.2.0-5ubuntu1_arm64.deb ... 106s Unpacking libtsan2:arm64 (15.2.0-5ubuntu1) ... 106s Selecting previously unselected package libubsan1:arm64. 106s Preparing to unpack .../039-libubsan1_15.2.0-5ubuntu1_arm64.deb ... 106s Unpacking libubsan1:arm64 (15.2.0-5ubuntu1) ... 106s Selecting previously unselected package libhwasan0:arm64. 106s Preparing to unpack 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previously unselected package libarchive-zip-perl. 108s Preparing to unpack .../056-libarchive-zip-perl_1.68-1_all.deb ... 108s Unpacking libarchive-zip-perl (1.68-1) ... 108s Selecting previously unselected package libfile-stripnondeterminism-perl. 108s Preparing to unpack .../057-libfile-stripnondeterminism-perl_1.14.2-1_all.deb ... 108s Unpacking libfile-stripnondeterminism-perl (1.14.2-1) ... 108s Selecting previously unselected package dh-strip-nondeterminism. 108s Preparing to unpack .../058-dh-strip-nondeterminism_1.14.2-1_all.deb ... 108s Unpacking dh-strip-nondeterminism (1.14.2-1) ... 108s Selecting previously unselected package debugedit. 108s Preparing to unpack .../059-debugedit_1%3a5.2-3_arm64.deb ... 108s Unpacking debugedit (1:5.2-3) ... 108s Selecting previously unselected package dwz. 108s Preparing to unpack .../060-dwz_0.16-2_arm64.deb ... 108s Unpacking dwz (0.16-2) ... 108s Selecting previously unselected package gettext. 108s Preparing to unpack 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xml-core. 109s Preparing to unpack .../067-xml-core_0.19_all.deb ... 109s Unpacking xml-core (0.19) ... 109s Selecting previously unselected package docutils-common. 109s Preparing to unpack .../068-docutils-common_0.21.2+dfsg-2_all.deb ... 109s Unpacking docutils-common (0.21.2+dfsg-2) ... 109s Selecting previously unselected package fonts-font-awesome. 109s Preparing to unpack .../069-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 109s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 109s Selecting previously unselected package fonts-lyx. 109s Preparing to unpack .../070-fonts-lyx_2.4.4-1_all.deb ... 109s Unpacking fonts-lyx (2.4.4-1) ... 109s Selecting previously unselected package fonts-mathjax. 109s Preparing to unpack .../071-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 109s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 109s Selecting previously unselected package libaec0:arm64. 109s Preparing to unpack .../072-libaec0_1.1.3-1_arm64.deb ... 109s Unpacking libaec0:arm64 (1.1.3-1) ... 109s Selecting previously unselected package libpixman-1-0:arm64. 109s Preparing to unpack .../073-libpixman-1-0_0.44.0-3_arm64.deb ... 109s Unpacking libpixman-1-0:arm64 (0.44.0-3) ... 109s Selecting previously unselected package libxcb-render0:arm64. 109s Preparing to unpack .../074-libxcb-render0_1.17.0-2build1_arm64.deb ... 109s Unpacking libxcb-render0:arm64 (1.17.0-2build1) ... 109s Selecting previously unselected package libxcb-shm0:arm64. 109s Preparing to unpack .../075-libxcb-shm0_1.17.0-2build1_arm64.deb ... 109s Unpacking libxcb-shm0:arm64 (1.17.0-2build1) ... 109s Selecting previously unselected package libcairo2:arm64. 109s Preparing to unpack .../076-libcairo2_1.18.4-1build1_arm64.deb ... 109s Unpacking libcairo2:arm64 (1.18.4-1build1) ... 109s Selecting previously unselected package libdeflate0:arm64. 109s Preparing to unpack .../077-libdeflate0_1.23-2_arm64.deb ... 109s Unpacking libdeflate0:arm64 (1.23-2) ... 109s Selecting previously unselected package libexpat1-dev:arm64. 109s Preparing to unpack .../078-libexpat1-dev_2.7.1-2_arm64.deb ... 109s Unpacking libexpat1-dev:arm64 (2.7.1-2) ... 109s Selecting previously unselected package libgraphite2-3:arm64. 109s Preparing to unpack .../079-libgraphite2-3_1.3.14-2ubuntu1_arm64.deb ... 109s Unpacking libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 109s Selecting previously unselected package libharfbuzz0b:arm64. 109s Preparing to unpack .../080-libharfbuzz0b_12.1.0-1_arm64.deb ... 109s Unpacking libharfbuzz0b:arm64 (12.1.0-1) ... 110s Selecting previously unselected package libsz2:arm64. 110s Preparing to unpack .../081-libsz2_1.1.3-1_arm64.deb ... 110s Unpacking libsz2:arm64 (1.1.3-1) ... 110s Selecting previously unselected package libhdf5-310:arm64. 110s Preparing to unpack .../082-libhdf5-310_1.14.5+repack-3build1_arm64.deb ... 110s Unpacking libhdf5-310:arm64 (1.14.5+repack-3build1) ... 110s Selecting previously unselected package libhdf5-hl-310:arm64. 110s Preparing to unpack .../083-libhdf5-hl-310_1.14.5+repack-3build1_arm64.deb ... 110s Unpacking libhdf5-hl-310:arm64 (1.14.5+repack-3build1) ... 110s Selecting previously unselected package libimagequant0:arm64. 110s Preparing to unpack .../084-libimagequant0_2.18.0-1build1_arm64.deb ... 110s Unpacking libimagequant0:arm64 (2.18.0-1build1) ... 110s Selecting previously unselected package libjpeg-turbo8:arm64. 110s Preparing to unpack .../085-libjpeg-turbo8_2.1.5-4ubuntu2_arm64.deb ... 110s Unpacking libjpeg-turbo8:arm64 (2.1.5-4ubuntu2) ... 110s Selecting previously unselected package libjpeg8:arm64. 110s Preparing to unpack .../086-libjpeg8_8c-2ubuntu11_arm64.deb ... 110s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 110s Selecting previously unselected package libjs-jquery. 110s Preparing to unpack .../087-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 110s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 110s Selecting previously unselected package libjs-jquery-ui. 110s Preparing to unpack .../088-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 110s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 110s Selecting previously unselected package libjs-underscore. 110s Preparing to unpack .../089-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... 110s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 110s Selecting previously unselected package libjs-sphinxdoc. 110s Preparing to unpack .../090-libjs-sphinxdoc_8.2.3-1ubuntu2_all.deb ... 110s Unpacking libjs-sphinxdoc (8.2.3-1ubuntu2) ... 110s Selecting previously unselected package libjson-perl. 110s Preparing to unpack .../091-libjson-perl_4.10000-1_all.deb ... 110s Unpacking libjson-perl (4.10000-1) ... 110s Selecting previously unselected package liblcms2-2:arm64. 110s Preparing to unpack .../092-liblcms2-2_2.16-2_arm64.deb ... 110s Unpacking liblcms2-2:arm64 (2.16-2) ... 110s Selecting previously unselected package liblerc4:arm64. 110s Preparing to unpack .../093-liblerc4_4.0.0+ds-5ubuntu1_arm64.deb ... 110s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 110s Selecting previously unselected package liblzf1:arm64. 110s Preparing to unpack .../094-liblzf1_3.6-4_arm64.deb ... 110s Unpacking liblzf1:arm64 (3.6-4) ... 110s Selecting previously unselected package libnetcdf22:arm64. 110s Preparing to unpack .../095-libnetcdf22_1%3a4.9.3-1build1_arm64.deb ... 110s Unpacking libnetcdf22:arm64 (1:4.9.3-1build1) ... 110s Selecting previously unselected package zlib1g-dev:arm64. 110s Preparing to unpack .../096-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu2_arm64.deb ... 110s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu2) ... 110s Selecting previously unselected package libpython3.13-dev:arm64. 110s Preparing to unpack .../097-libpython3.13-dev_3.13.7-1_arm64.deb ... 110s Unpacking libpython3.13-dev:arm64 (3.13.7-1) ... 110s Selecting previously unselected package libpython3-dev:arm64. 110s Preparing to unpack .../098-libpython3-dev_3.13.7-1_arm64.deb ... 110s Unpacking libpython3-dev:arm64 (3.13.7-1) ... 110s Selecting previously unselected package libpython3-all-dev:arm64. 110s Preparing to unpack .../099-libpython3-all-dev_3.13.7-1_arm64.deb ... 110s Unpacking libpython3-all-dev:arm64 (3.13.7-1) ... 110s Selecting previously unselected package libqhull-r8.0:arm64. 110s Preparing to unpack .../100-libqhull-r8.0_2020.2-6build1_arm64.deb ... 110s Unpacking libqhull-r8.0:arm64 (2020.2-6build1) ... 111s Selecting previously unselected package libraqm0:arm64. 111s Preparing to unpack .../101-libraqm0_0.10.3-1_arm64.deb ... 111s Unpacking libraqm0:arm64 (0.10.3-1) ... 111s Selecting previously unselected package libsharpyuv0:arm64. 111s Preparing to unpack .../102-libsharpyuv0_1.5.0-0.1_arm64.deb ... 111s Unpacking libsharpyuv0:arm64 (1.5.0-0.1) ... 111s Selecting previously unselected package libjbig0:arm64. 111s Preparing to unpack .../103-libjbig0_2.1-6.1ubuntu2_arm64.deb ... 111s Unpacking libjbig0:arm64 (2.1-6.1ubuntu2) ... 111s Selecting previously unselected package libwebp7:arm64. 111s Preparing to unpack .../104-libwebp7_1.5.0-0.1_arm64.deb ... 111s Unpacking libwebp7:arm64 (1.5.0-0.1) ... 111s Selecting previously unselected package libtiff6:arm64. 111s Preparing to unpack .../105-libtiff6_4.7.0-3ubuntu3_arm64.deb ... 111s Unpacking libtiff6:arm64 (4.7.0-3ubuntu3) ... 111s Selecting previously unselected package libwebpdemux2:arm64. 111s Preparing to unpack .../106-libwebpdemux2_1.5.0-0.1_arm64.deb ... 111s Unpacking libwebpdemux2:arm64 (1.5.0-0.1) ... 111s Selecting previously unselected package libwebpmux3:arm64. 111s Preparing to unpack .../107-libwebpmux3_1.5.0-0.1_arm64.deb ... 111s Unpacking libwebpmux3:arm64 (1.5.0-0.1) ... 111s Selecting previously unselected package libxslt1.1:arm64. 111s Preparing to unpack .../108-libxslt1.1_1.1.43-0.1_arm64.deb ... 111s Unpacking libxslt1.1:arm64 (1.1.43-0.1) ... 111s Selecting previously unselected package libzopfli1. 111s Preparing to unpack .../109-libzopfli1_1.0.3-3_arm64.deb ... 111s Unpacking libzopfli1 (1.0.3-3) ... 111s Selecting previously unselected package python3-packaging. 111s Preparing to unpack .../110-python3-packaging_25.0-1_all.deb ... 111s Unpacking python3-packaging (25.0-1) ... 111s Selecting previously unselected package python3-pyproject-hooks. 111s Preparing to unpack .../111-python3-pyproject-hooks_1.2.0-1_all.deb ... 111s Unpacking python3-pyproject-hooks (1.2.0-1) ... 111s Selecting previously unselected package python3-wheel. 111s Preparing to unpack .../112-python3-wheel_0.46.1-2_all.deb ... 111s Unpacking python3-wheel (0.46.1-2) ... 111s Selecting previously unselected package python3-build. 111s Preparing to unpack .../113-python3-build_1.2.2-2_all.deb ... 111s Unpacking python3-build (1.2.2-2) ... 111s Selecting previously unselected package python3-installer. 111s Preparing to unpack .../114-python3-installer_0.7.0+dfsg1-3_all.deb ... 111s Unpacking python3-installer (0.7.0+dfsg1-3) ... 111s Selecting previously unselected package pybuild-plugin-pyproject. 111s Preparing to unpack .../115-pybuild-plugin-pyproject_6.20250414_all.deb ... 111s Unpacking pybuild-plugin-pyproject (6.20250414) ... 111s Selecting previously unselected package python-matplotlib-data. 111s Preparing to unpack .../116-python-matplotlib-data_3.10.1+dfsg1-4_all.deb ... 111s Unpacking python-matplotlib-data (3.10.1+dfsg1-4) ... 111s Selecting previously unselected package libjs-mathjax. 111s Preparing to unpack .../117-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 111s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 112s Selecting previously unselected package python-mdanalysis-doc. 112s Preparing to unpack .../118-python-mdanalysis-doc_2.9.0-12_all.deb ... 112s Unpacking python-mdanalysis-doc (2.9.0-12) ... 112s Selecting previously unselected package python3-all. 112s Preparing to unpack .../119-python3-all_3.13.7-1_arm64.deb ... 112s Unpacking python3-all (3.13.7-1) ... 112s Selecting previously unselected package python3.13-dev. 112s Preparing to unpack .../120-python3.13-dev_3.13.7-1_arm64.deb ... 112s Unpacking python3.13-dev (3.13.7-1) ... 112s Selecting previously unselected package python3-dev. 112s Preparing to unpack .../121-python3-dev_3.13.7-1_arm64.deb ... 112s Unpacking python3-dev (3.13.7-1) ... 112s Selecting previously unselected package python3-all-dev. 112s Preparing to unpack .../122-python3-all-dev_3.13.7-1_arm64.deb ... 112s Unpacking python3-all-dev (3.13.7-1) ... 112s Selecting previously unselected package python3-charset-normalizer. 112s Preparing to unpack .../123-python3-charset-normalizer_3.4.2-1_arm64.deb ... 112s Unpacking python3-charset-normalizer (3.4.2-1) ... 112s Selecting previously unselected package python3.13-tk. 112s Preparing to unpack .../124-python3.13-tk_3.13.7-1_arm64.deb ... 112s Unpacking python3.13-tk (3.13.7-1) ... 112s Selecting previously unselected package python3-tk:arm64. 112s Preparing to unpack .../125-python3-tk_3.13.5-1_arm64.deb ... 112s Unpacking python3-tk:arm64 (3.13.5-1) ... 112s Selecting previously unselected package python3-pil.imagetk:arm64. 112s Preparing to unpack .../126-python3-pil.imagetk_11.3.0-1ubuntu1_arm64.deb ... 112s Unpacking python3-pil.imagetk:arm64 (11.3.0-1ubuntu1) ... 112s Selecting previously unselected package libopenjp2-7:arm64. 112s Preparing to unpack .../127-libopenjp2-7_2.5.3-2.1_arm64.deb ... 112s Unpacking libopenjp2-7:arm64 (2.5.3-2.1) ... 112s Selecting previously unselected package python3-pil:arm64. 112s Preparing to unpack .../128-python3-pil_11.3.0-1ubuntu1_arm64.deb ... 112s Unpacking python3-pil:arm64 (11.3.0-1ubuntu1) ... 112s Selecting previously unselected package python3-cairo. 112s Preparing to unpack .../129-python3-cairo_1.27.0-2build1_arm64.deb ... 112s Unpacking python3-cairo (1.27.0-2build1) ... 112s Selecting previously unselected package python3-freetype. 112s Preparing to unpack .../130-python3-freetype_2.5.1-1_all.deb ... 112s Unpacking python3-freetype (2.5.1-1) ... 112s Selecting previously unselected package python3-rlpycairo. 112s Preparing to unpack .../131-python3-rlpycairo_0.3.0-3_all.deb ... 112s Unpacking python3-rlpycairo (0.3.0-3) ... 112s Selecting previously unselected package python3-reportlab. 112s Preparing to unpack .../132-python3-reportlab_4.4.2-1_all.deb ... 112s Unpacking python3-reportlab (4.4.2-1) ... 113s Selecting previously unselected package w3c-sgml-lib. 113s Preparing to unpack .../133-w3c-sgml-lib_1.3-3_all.deb ... 113s Unpacking w3c-sgml-lib (1.3-3) ... 113s Selecting previously unselected package python3-biopython. 113s Preparing to unpack .../134-python3-biopython_1.85+dfsg-4_arm64.deb ... 113s Unpacking python3-biopython (1.85+dfsg-4) ... 113s Selecting previously unselected package python3-brotli. 113s Preparing to unpack .../135-python3-brotli_1.1.0-2build6_arm64.deb ... 113s Unpacking python3-brotli (1.1.0-2build6) ... 113s Selecting previously unselected package python3-cftime. 113s Preparing to unpack .../136-python3-cftime_1.6.4-2_arm64.deb ... 113s Unpacking python3-cftime (1.6.4-2) ... 113s Selecting previously unselected package python3-lxml:arm64. 113s Preparing to unpack .../137-python3-lxml_6.0.1-1_arm64.deb ... 113s Unpacking python3-lxml:arm64 (6.0.1-1) ... 113s Selecting previously unselected package python3-citeproc. 113s Preparing to unpack .../138-python3-citeproc_0.8.2-1_all.deb ... 113s Unpacking python3-citeproc (0.8.2-1) ... 113s Selecting previously unselected package python3-contourpy. 113s Preparing to unpack .../139-python3-contourpy_1.3.1-1build1_arm64.deb ... 113s Unpacking python3-contourpy (1.3.1-1build1) ... 113s Selecting previously unselected package python3-cycler. 113s Preparing to unpack .../140-python3-cycler_0.12.1-1_all.deb ... 113s Unpacking python3-cycler (0.12.1-1) ... 113s Selecting previously unselected package python3-dateutil. 113s Preparing to unpack .../141-python3-dateutil_2.9.0-4_all.deb ... 113s Unpacking python3-dateutil (2.9.0-4) ... 113s Selecting previously unselected package python3-decorator. 113s Preparing to unpack .../142-python3-decorator_5.2.1-2_all.deb ... 113s Unpacking python3-decorator (5.2.1-2) ... 113s Selecting previously unselected package python3-defusedxml. 113s Preparing to unpack .../143-python3-defusedxml_0.7.1-3_all.deb ... 113s Unpacking python3-defusedxml (0.7.1-3) ... 113s Selecting previously unselected package python3-roman. 113s Preparing to unpack .../144-python3-roman_5.1-1_all.deb ... 113s Unpacking python3-roman (5.1-1) ... 113s Selecting previously unselected package python3-docutils. 113s Preparing to unpack .../145-python3-docutils_0.21.2+dfsg-2_all.deb ... 113s Unpacking python3-docutils (0.21.2+dfsg-2) ... 113s Selecting previously unselected package python3-looseversion. 113s Preparing to unpack .../146-python3-looseversion_1.3.0-3_all.deb ... 113s Unpacking python3-looseversion (1.3.0-3) ... 113s Selecting previously unselected package python3-duecredit. 113s Preparing to unpack .../147-python3-duecredit_0.10.2-2_all.deb ... 113s Unpacking python3-duecredit (0.10.2-2) ... 113s Selecting previously unselected package python3-monotonic. 113s Preparing to unpack .../148-python3-monotonic_1.6-3_all.deb ... 113s Unpacking python3-monotonic (1.6-3) ... 113s Selecting previously unselected package python3-fasteners. 113s Preparing to unpack .../149-python3-fasteners_0.18-2_all.deb ... 113s Unpacking python3-fasteners (0.18-2) ... 113s Selecting previously unselected package python3-filelock. 113s Preparing to unpack .../150-python3-filelock_3.18.0-1_all.deb ... 113s Unpacking python3-filelock (3.18.0-1) ... 113s Selecting previously unselected package python3-platformdirs. 113s Preparing to unpack .../151-python3-platformdirs_4.3.7-1_all.deb ... 113s Unpacking python3-platformdirs (4.3.7-1) ... 113s Selecting previously unselected package python3-fs. 113s Preparing to unpack .../152-python3-fs_2.4.16-7_all.deb ... 113s Unpacking python3-fs (2.4.16-7) ... 114s Selecting previously unselected package python3-lz4. 114s Preparing to unpack .../153-python3-lz4_4.4.0+dfsg-2_arm64.deb ... 114s Unpacking python3-lz4 (4.4.0+dfsg-2) ... 114s Selecting previously unselected package python3-scipy. 114s Preparing to unpack .../154-python3-scipy_1.15.3-1_arm64.deb ... 114s Unpacking python3-scipy (1.15.3-1) ... 114s Selecting previously unselected package python3-mpmath. 114s Preparing to unpack .../155-python3-mpmath_1.3.0-1_all.deb ... 114s Unpacking python3-mpmath (1.3.0-1) ... 114s Selecting previously unselected package python3-sympy. 114s Preparing to unpack .../156-python3-sympy_1.13.3-5_all.deb ... 114s Unpacking python3-sympy (1.13.3-5) ... 115s Selecting previously unselected package python3-ufolib2. 115s Preparing to unpack .../157-python3-ufolib2_0.17.1+dfsg1-1_all.deb ... 115s Unpacking python3-ufolib2 (0.17.1+dfsg1-1) ... 115s Selecting previously unselected package python3-zopfli. 115s Preparing to unpack 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Unpacking python3-griddataformats (1.0.2-2) ... 115s Selecting previously unselected package python3-gsd. 115s Preparing to unpack .../164-python3-gsd_3.4.2-2build1_arm64.deb ... 115s Unpacking python3-gsd (3.4.2-2build1) ... 115s Selecting previously unselected package python3-h5py-serial. 115s Preparing to unpack .../165-python3-h5py-serial_3.13.0-1ubuntu1_arm64.deb ... 115s Unpacking python3-h5py-serial (3.13.0-1ubuntu1) ... 115s Selecting previously unselected package python3-h5py. 115s Preparing to unpack .../166-python3-h5py_3.13.0-1ubuntu1_all.deb ... 115s Unpacking python3-h5py (3.13.0-1ubuntu1) ... 115s Selecting previously unselected package python3-sortedcontainers. 115s Preparing to unpack .../167-python3-sortedcontainers_2.4.0-2_all.deb ... 115s Unpacking python3-sortedcontainers (2.4.0-2) ... 115s Selecting previously unselected package python3-hypothesis. 115s Preparing to unpack .../168-python3-hypothesis_6.130.5-2_all.deb ... 115s Unpacking python3-hypothesis (6.130.5-2) ... 115s Selecting previously unselected package python3-imagesize. 115s Preparing to unpack .../169-python3-imagesize_1.4.1-1_all.deb ... 115s Unpacking python3-imagesize (1.4.1-1) ... 115s Selecting previously unselected package python3-iniconfig. 115s Preparing to unpack .../170-python3-iniconfig_1.1.1-2_all.deb ... 115s Unpacking python3-iniconfig (1.1.1-2) ... 115s Selecting previously unselected package python3-joblib. 115s Preparing to unpack .../171-python3-joblib_1.4.2-4_all.deb ... 115s Unpacking python3-joblib (1.4.2-4) ... 115s Selecting previously unselected package python3-kiwisolver. 115s Preparing to unpack .../172-python3-kiwisolver_1.4.7-3build2_arm64.deb ... 115s Unpacking python3-kiwisolver (1.4.7-3build2) ... 115s Selecting previously unselected package python3-latexcodec. 115s Preparing to unpack .../173-python3-latexcodec_3.0.0-1_all.deb ... 115s Unpacking python3-latexcodec (3.0.0-1) ... 115s Selecting previously unselected package python3-matplotlib. 115s Preparing to unpack .../174-python3-matplotlib_3.10.1+dfsg1-4_arm64.deb ... 115s Unpacking python3-matplotlib (3.10.1+dfsg1-4) ... 116s Selecting previously unselected package python3-mda-xdrlib. 116s Preparing to unpack .../175-python3-mda-xdrlib_0.2.0-3_all.deb ... 116s Unpacking python3-mda-xdrlib (0.2.0-3) ... 116s Selecting previously unselected package python3-msgpack. 116s Preparing to unpack .../176-python3-msgpack_1.0.3-3build4_arm64.deb ... 116s Unpacking python3-msgpack (1.0.3-3build4) ... 116s Selecting previously unselected package python3-mmtf. 116s Preparing to unpack .../177-python3-mmtf_1.1.3-1_all.deb ... 116s Unpacking python3-mmtf (1.1.3-1) ... 116s Selecting previously unselected package python3-threadpoolctl. 116s Preparing to unpack .../178-python3-threadpoolctl_3.1.0-1_all.deb ... 116s Unpacking python3-threadpoolctl (3.1.0-1) ... 116s Selecting previously unselected package python3-tqdm. 116s Preparing to unpack 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libxcb-shm0:arm64 (1.17.0-2build1) ... 120s Setting up python3-sortedcontainers (2.4.0-2) ... 120s Setting up libgomp1:arm64 (15.2.0-5ubuntu1) ... 120s Setting up python3-freetype (2.5.1-1) ... 121s Setting up python3-networkx (3.2.1-4ubuntu1) ... 122s Setting up libjbig0:arm64 (2.1-6.1ubuntu2) ... 122s Setting up python3-mda-xdrlib (0.2.0-3) ... 122s Setting up libaec0:arm64 (1.1.3-1) ... 122s Setting up python3-platformdirs (4.3.7-1) ... 122s Setting up python3-monotonic (1.6-3) ... 122s Setting up python3-fs (2.4.16-7) ... 122s Setting up unicode-data (16.0.0-1) ... 122s Setting up python3-six (1.17.0-1) ... 122s Setting up python3-roman (5.1-1) ... 123s Setting up python3-decorator (5.2.1-2) ... 123s Setting up libfontenc1:arm64 (1:1.1.8-1build1) ... 123s Setting up autotools-dev (20240727.1) ... 123s Setting up libblas3:arm64 (3.12.1-6build1) ... 123s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 123s Setting up python3-packaging (25.0-1) ... 123s Setting up libexpat1-dev:arm64 (2.7.1-2) ... 123s Setting up python3-pyproject-hooks (1.2.0-1) ... 123s Setting up libzopfli1 (1.0.3-3) ... 123s Setting up python3-snowballstemmer (2.2.0-4build1) ... 123s Setting up python3-brotli (1.1.0-2build6) ... 123s Setting up liblzf1:arm64 (3.6-4) ... 123s Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ... 123s Setting up python3-cycler (0.12.1-1) ... 123s Setting up libimagequant0:arm64 (2.18.0-1build1) ... 123s Setting up fonts-dejavu-mono (2.37-8) ... 123s Setting up python3-kiwisolver (1.4.7-3build2) ... 124s Setting up libmpc3:arm64 (1.3.1-1build3) ... 124s Setting up python3-numpy-dev:arm64 (1:2.2.4+ds-1ubuntu1) ... 124s Setting up cython3 (3.0.11+dfsg-2ubuntu4) ... 124s Setting up libtcl8.6:arm64 (8.6.17+dfsg-1) ... 124s Setting up autopoint (0.23.1-2build2) ... 124s Setting up fonts-dejavu-core (2.37-8) ... 124s Setting up python3-fasteners 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/usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode 126s Setting up libfile-stripnondeterminism-perl (1.14.2-1) ... 126s Setting up python3-sympy (1.13.3-5) ... 132s Setting up cpp-15-aarch64-linux-gnu (15.2.0-5ubuntu1) ... 132s Setting up liblapack3:arm64 (3.12.1-6build1) ... 132s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 132s Setting up gettext (0.23.1-2build2) ... 132s Setting up libgcc-15-dev:arm64 (15.2.0-5ubuntu1) ... 132s Setting up fontconfig-config (2.15.0-2.3ubuntu1) ... 132s Setting up python3-pytest (8.4.2-1) ... 133s Setting up libwebpdemux2:arm64 (1.5.0-0.1) ... 133s Setting up python3-hypothesis (6.130.5-2) ... 133s Setting up xfonts-utils (1:7.7+7) ... 133s Setting up python3-wheel (0.46.1-2) ... 133s Setting up python3-zopfli (0.2.3.post1-1) ... 133s Setting up intltool-debian (0.35.0+20060710.6) ... 133s Setting up cpp-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 133s Setting up libstdc++-15-dev:arm64 (15.2.0-5ubuntu1) ... 133s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 133s Setting up libraqm0:arm64 (0.10.3-1) ... 133s Setting up libpython3.13-dev:arm64 (3.13.7-1) ... 133s Setting up python3-numpy (1:2.2.4+ds-1ubuntu1) ... 135s Setting up libjs-sphinxdoc (8.2.3-1ubuntu2) ... 135s Setting up dh-strip-nondeterminism (1.14.2-1) ... 135s Setting up libhdf5-310:arm64 (1.14.5+repack-3build1) ... 135s Setting up cpp-15 (15.2.0-5ubuntu1) ... 135s Setting up python3-lxml:arm64 (6.0.1-1) ... 135s Setting up libtiff6:arm64 (4.7.0-3ubuntu3) ... 135s Setting up cpp (4:15.2.0-4ubuntu1) ... 135s Setting up xml-core (0.19) ... 135s Setting up python3-contourpy (1.3.1-1build1) ... 136s Setting up libfontconfig1:arm64 (2.15.0-2.3ubuntu1) ... 136s Setting up python3-build (1.2.2-2) ... 136s Setting up python3-mrcfile (1.5.4-2) ... 136s Setting up libhdf5-hl-310:arm64 (1.14.5+repack-3build1) ... 136s Setting up libxft2:arm64 (2.3.6-1build1) ... 136s Setting up gcc-15-aarch64-linux-gnu (15.2.0-5ubuntu1) ... 136s Setting up python3-scipy (1.15.3-1) ... 139s Setting up libpython3-dev:arm64 (3.13.7-1) ... 139s Setting up python3-citeproc (0.8.2-1) ... 139s Setting up pybuild-plugin-pyproject (6.20250414) ... 139s Setting up python3.13-dev (3.13.7-1) ... 139s Setting up po-debconf (1.0.21+nmu1) ... 139s Setting up libtk8.6:arm64 (8.6.17-1) ... 140s Setting up python3-pandas-lib:arm64 (2.2.3+dfsg-9) ... 140s Setting up libnetcdf22:arm64 (1:4.9.3-1build1) ... 140s Setting up python3-sklearn-lib:arm64 (1.4.2+dfsg-8) ... 140s Setting up python3-h5py-serial (3.13.0-1ubuntu1) ... 140s Setting up python3-gsd (3.4.2-2build1) ... 140s Setting up python3-mmtf (1.1.3-1) ... 140s Setting up fonts-urw-base35 (20200910-8) ... 140s Setting up libcairo2:arm64 (1.18.4-1build1) ... 140s Setting up python3.13-tk (3.13.7-1) ... 140s Setting up python-mdanalysis-doc (2.9.0-12) ... 140s Setting up python3-pil:arm64 (11.3.0-1ubuntu1) ... 141s Setting up gcc-15 (15.2.0-5ubuntu1) ... 141s Setting up python3-griddataformats (1.0.2-2) ... 141s Setting up python3-pandas (2.2.3+dfsg-9) ... 146s Setting up g++-15-aarch64-linux-gnu (15.2.0-5ubuntu1) ... 146s Setting up libpython3-all-dev:arm64 (3.13.7-1) ... 146s Setting up sphinx-common (8.2.3-1ubuntu2) ... 146s Setting up python3-dev (3.13.7-1) ... 146s Setting up python3-h5py (3.13.0-1ubuntu1) ... 146s Setting up python3-sklearn (1.4.2+dfsg-8) ... 148s Setting up python3-cftime (1.6.4-2) ... 148s Setting up g++-15 (15.2.0-5ubuntu1) ... 148s Setting up python3-netcdf4 (1.7.2-1build4) ... 148s Setting up python3-all-dev (3.13.7-1) ... 148s Setting up gcc-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 148s Setting up tk8.6-blt2.5 (2.5.3+dfsg-8) ... 148s Setting up python3-cairo (1.27.0-2build1) ... 148s Setting up python3-duecredit (0.10.2-2) ... 148s Setting up libtool (2.5.4-4build1) ... 148s Setting up blt (2.5.3+dfsg-8) ... 148s Setting up python3-tk:arm64 (3.13.5-1) ... 148s Setting up gcc (4:15.2.0-4ubuntu1) ... 148s Setting up dh-autoreconf (21) ... 148s Setting up python3-pil.imagetk:arm64 (11.3.0-1ubuntu1) ... 148s Setting up python3-rlpycairo (0.3.0-3) ... 148s Setting up python3-reportlab (4.4.2-1) ... 149s Setting up g++-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 149s Setting up debhelper (13.24.2ubuntu1) ... 149s Setting up g++ (4:15.2.0-4ubuntu1) ... 149s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 149s Setting up build-essential (12.12ubuntu1) ... 149s Setting up python3-fonttools (4.57.0-1) ... 150s Setting up python3-ufolib2 (0.17.1+dfsg1-1) ... 150s Setting up python3-matplotlib (3.10.1+dfsg1-4) ... 152s Setting up python3-seaborn (0.13.2-5) ... 152s Processing triggers for man-db (2.13.1-1) ... 154s Processing triggers for install-info (7.1.1-1ubuntu1) ... 154s Processing triggers for libc-bin (2.42-0ubuntu3) ... 154s Processing triggers for sgml-base (1.31+nmu1) ... 154s Setting up docutils-common (0.21.2+dfsg-2) ... 154s Setting up w3c-sgml-lib (1.3-3) ... 181s Setting up python3-biopython (1.85+dfsg-4) ... 182s Setting up python3-mdanalysis (2.9.0-12) ... 183s Processing triggers for sgml-base (1.31+nmu1) ... 183s Setting up python3-docutils (0.21.2+dfsg-2) ... 183s Setting up python3-pybtex-docutils (1.0.3-1) ... 183s Setting up python3-sphinx (8.2.3-1ubuntu2) ... 184s Setting up python3-sphinxcontrib.bibtex (2.6.2-1) ... 184s Setting up python3-sphinx-sitemap (2.6.0-1) ... 184s Setting up python3-sphinxcontrib.jquery (4.1-6) ... 184s Setting up python3-sphinx-rtd-theme (3.0.2+dfsg-3) ... 184s Setting up python3-msmb-theme (1.2.0-4) ... 186s autopkgtest [20:19:15]: test test-mdanalysis: [----------------------- 186s mdanalysis tests are not stable, see Bug#1108309 and https://github.com/MDAnalysis/mdanalysis/issues/5078 186s hence skipping tests 186s autopkgtest [20:19:15]: test test-mdanalysis: -----------------------] 187s autopkgtest [20:19:16]: test test-mdanalysis: - - - - - - - - - - results - - - - - - - - - - 187s test-mdanalysis FLAKY non-zero exit status 2 187s autopkgtest [20:19:16]: @@@@@@@@@@@@@@@@@@@@ summary 187s test-mdanalysis FLAKY non-zero exit status 2