0s autopkgtest [18:44:15]: starting date and time: 2026-01-22 18:44:15+0000 0s autopkgtest [18:44:15]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [18:44:15]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.i6iku3su/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults --apt-upgrade mcaller --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=python3-defaults/3.14.2-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-arm64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@sto01-arm64-12.secgroup --name adt-resolute-arm64-mcaller-20260122-184415-juju-7f2275-prod-proposed-migration-environment-2-f2dcb61f-c654-4733-a3ec-15e86be229a4 --image adt/ubuntu-resolute-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-autopkgtest-workers-arm64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 4s Creating nova instance adt-resolute-arm64-mcaller-20260122-184415-juju-7f2275-prod-proposed-migration-environment-2-f2dcb61f-c654-4733-a3ec-15e86be229a4 from image adt/ubuntu-resolute-arm64-server-20260122.img (UUID ed27afc7-5f46-4e8b-ad73-864280a0ddbb)... 61s autopkgtest [18:45:16]: testbed dpkg architecture: arm64 62s autopkgtest [18:45:17]: testbed apt version: 3.1.12 62s autopkgtest [18:45:17]: @@@@@@@@@@@@@@@@@@@@ test bed setup 62s autopkgtest [18:45:17]: testbed release detected to be: None 63s autopkgtest [18:45:18]: updating testbed package index (apt update) 64s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 64s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 64s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 64s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 64s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [19.2 kB] 64s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [815 kB] 65s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [2820 B] 65s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [80.9 kB] 65s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 Packages [103 kB] 65s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 c-n-f Metadata [3316 B] 65s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 Packages [7876 B] 65s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 c-n-f Metadata [120 B] 65s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 Packages [639 kB] 65s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 c-n-f Metadata [16.2 kB] 65s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 Packages [4636 B] 65s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 c-n-f Metadata [460 B] 68s Fetched 1818 kB in 2s (948 kB/s) 68s Reading package lists... 69s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 69s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 69s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 69s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 70s Reading package lists... 70s Reading package lists... 70s Building dependency tree... 70s Reading state information... 71s Calculating upgrade... 71s The following packages were automatically installed and are no longer required: 71s python3.13 python3.13-minimal 71s Use 'sudo apt autoremove' to remove them. 71s The following NEW packages will be installed: 71s libpython3.14-minimal libpython3.14-stdlib python3.14 python3.14-minimal 71s The following packages will be upgraded: 71s libpython3-stdlib python3 python3-gdbm python3-minimal 72s 4 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. 72s Need to get 6705 kB of archives. 72s After this operation, 26.0 MB of additional disk space will be used. 72s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 libpython3.14-minimal arm64 3.14.2-1 [917 kB] 72s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 python3.14-minimal arm64 3.14.2-1 [2548 kB] 72s Get:3 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 python3-gdbm arm64 3.14.2-1 [11.1 kB] 72s Get:4 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 python3-minimal arm64 3.14.2-1 [28.2 kB] 72s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 python3 arm64 3.14.2-1 [22.9 kB] 72s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 libpython3.14-stdlib arm64 3.14.2-1 [2351 kB] 72s Get:7 http://ftpmaster.internal/ubuntu resolute/main arm64 python3.14 arm64 3.14.2-1 [816 kB] 72s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 libpython3-stdlib arm64 3.14.2-1 [10.9 kB] 72s dpkg-preconfigure: unable to re-open stdin: No such file or directory 72s Fetched 6705 kB in 1s (11.6 MB/s) 72s Selecting previously unselected package libpython3.14-minimal:arm64. 72s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 135223 files and directories currently installed.) 72s Preparing to unpack .../libpython3.14-minimal_3.14.2-1_arm64.deb ... 72s Unpacking libpython3.14-minimal:arm64 (3.14.2-1) ... 73s Selecting previously unselected package python3.14-minimal. 73s Preparing to unpack .../python3.14-minimal_3.14.2-1_arm64.deb ... 73s Unpacking python3.14-minimal (3.14.2-1) ... 73s Preparing to unpack .../python3-gdbm_3.14.2-1_arm64.deb ... 73s Unpacking python3-gdbm (3.14.2-1) over (3.13.9-1) ... 73s Setting up libpython3.14-minimal:arm64 (3.14.2-1) ... 73s Setting up python3.14-minimal (3.14.2-1) ... 74s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 135565 files and directories currently installed.) 74s Preparing to unpack .../python3-minimal_3.14.2-1_arm64.deb ... 74s Unpacking python3-minimal (3.14.2-1) over (3.13.7-1) ... 74s Setting up python3-minimal (3.14.2-1) ... 74s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 135565 files and directories currently installed.) 74s Preparing to unpack .../python3_3.14.2-1_arm64.deb ... 74s running python pre-rtupdate hooks for python3.14... 74s Unpacking python3 (3.14.2-1) over (3.13.7-1) ... 74s Selecting previously unselected package libpython3.14-stdlib:arm64. 75s Preparing to unpack .../libpython3.14-stdlib_3.14.2-1_arm64.deb ... 75s Unpacking libpython3.14-stdlib:arm64 (3.14.2-1) ... 75s Selecting previously unselected package python3.14. 75s Preparing to unpack .../python3.14_3.14.2-1_arm64.deb ... 75s Unpacking python3.14 (3.14.2-1) ... 75s Preparing to unpack .../libpython3-stdlib_3.14.2-1_arm64.deb ... 75s Unpacking libpython3-stdlib:arm64 (3.14.2-1) over (3.13.7-1) ... 75s Setting up libpython3.14-stdlib:arm64 (3.14.2-1) ... 75s Setting up python3.14 (3.14.2-1) ... 76s Setting up libpython3-stdlib:arm64 (3.14.2-1) ... 76s Setting up python3-gdbm (3.14.2-1) ... 76s Setting up python3 (3.14.2-1) ... 76s running python rtupdate hooks for python3.14... 76s running python post-rtupdate hooks for python3.14... 76s Processing triggers for man-db (2.13.1-1) ... 77s Processing triggers for systemd (259-1ubuntu2) ... 77s autopkgtest [18:45:32]: upgrading testbed (apt dist-upgrade and autopurge) 77s Reading package lists... 77s Building dependency tree... 77s Reading state information... 78s Calculating upgrade... 78s The following packages were automatically installed and are no longer required: 78s python3.13 python3.13-minimal 78s Use 'sudo apt autoremove' to remove them. 78s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 78s Reading package lists... 79s Building dependency tree... 79s Reading state information... 79s Solving dependencies... 79s The following packages will be REMOVED: 79s python3.13* python3.13-minimal* 79s 0 upgraded, 0 newly installed, 2 to remove and 0 not upgraded. 79s After this operation, 7766 kB disk space will be freed. 79s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 135995 files and directories currently installed.) 79s Removing python3.13 (3.13.11-1) ... 80s Removing python3.13-minimal (3.13.11-1) ... 81s Processing triggers for man-db (2.13.1-1) ... 81s Processing triggers for systemd (259-1ubuntu2) ... 81s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 135968 files and directories currently installed.) 81s Purging configuration files for python3.13-minimal (3.13.11-1) ... 84s autopkgtest [18:45:39]: testbed running kernel: Linux 6.18.0-9-generic #9-Ubuntu SMP PREEMPT_DYNAMIC Mon Jan 12 16:41:39 UTC 2026 84s autopkgtest [18:45:39]: @@@@@@@@@@@@@@@@@@@@ apt-source mcaller 85s Get:1 http://ftpmaster.internal/ubuntu resolute/universe mcaller 1.0.3+git20210624.b415090-3build1 (dsc) [2234 B] 85s Get:2 http://ftpmaster.internal/ubuntu resolute/universe mcaller 1.0.3+git20210624.b415090-3build1 (tar) [6613 kB] 85s Get:3 http://ftpmaster.internal/ubuntu resolute/universe mcaller 1.0.3+git20210624.b415090-3build1 (diff) [7588 B] 86s gpgv: Signature made Tue Dec 16 20:01:30 2025 UTC 86s gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2 86s gpgv: Can't check signature: No public key 86s dpkg-source: warning: cannot verify inline signature for ./mcaller_1.0.3+git20210624.b415090-3build1.dsc: no acceptable signature found 86s autopkgtest [18:45:41]: testing package mcaller version 1.0.3+git20210624.b415090-3build1 88s autopkgtest [18:45:43]: build not needed 91s autopkgtest [18:45:46]: test run-unit-test: preparing testbed 91s Reading package lists... 91s Building dependency tree... 91s Reading state information... 91s Solving dependencies... 92s The following NEW packages will be installed: 92s fontconfig-config fonts-dejavu-core fonts-dejavu-extra fonts-dejavu-mono 92s fonts-lyx fonts-urw-base35 libaec0 libblas3 libcairo2 libdeflate0 92s libfontconfig1 libfontenc1 libgfortran5 libgomp1 libgraphite2-3 92s libharfbuzz0b libhdf5-310 libhdf5-hl-310 libhts3t64 libhtscodecs2 92s libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 liblapack3 liblcms2-2 92s liblerc4 liblzf1 libopenjp2-7 libpixman-1-0 libqhull-r8.0 libraqm0 92s libsharpyuv0 libsz2 libtcl8.6 libtiff6 libtk8.6 libwebp7 libwebpdemux2 92s libwebpmux3 libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxslt1.1 92s libxss1 libzopfli1 mcaller python-matplotlib-data python3-biopython 92s python3-brotli python3-cairo python3-charset-normalizer python3-contourpy 92s python3-cycler python3-decorator python3-fonttools python3-freetype 92s python3-h5py python3-h5py-serial python3-joblib python3-kiwisolver 92s python3-lxml python3-lz4 python3-matplotlib python3-mpmath python3-numpy 92s python3-numpy-dev python3-pandas python3-pandas-lib python3-pil 92s python3-pil.imagetk python3-pysam python3-pytz python3-reportlab 92s python3-rlpycairo python3-scipy python3-seaborn python3-sklearn 92s python3-sklearn-lib python3-sympy python3-threadpoolctl python3-tk 92s python3-ufolib2 python3-unicodedata2 python3-zopfli python3.13-tk 92s python3.14-tk sgml-base unicode-data w3c-sgml-lib x11-common 92s xfonts-encodings xfonts-utils xml-core 92s 0 upgraded, 95 newly installed, 0 to remove and 0 not upgraded. 92s Need to get 113 MB of archives. 92s After this operation, 548 MB of additional disk space will be used. 92s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-numpy-dev arm64 1:2.3.5+ds-3 [366 kB] 92s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 libblas3 arm64 3.12.1-7ubuntu1 [181 kB] 92s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 libgfortran5 arm64 15.2.0-11ubuntu1 [450 kB] 92s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 liblapack3 arm64 3.12.1-7ubuntu1 [2299 kB] 92s Get:5 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-numpy arm64 1:2.3.5+ds-3 [4569 kB] 92s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-mono all 2.37-8build1 [502 kB] 92s Get:7 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-core all 2.37-8build1 [834 kB] 93s Get:8 http://ftpmaster.internal/ubuntu resolute/main arm64 libfontenc1 arm64 1:1.1.8-1build2 [13.9 kB] 93s Get:9 http://ftpmaster.internal/ubuntu resolute/main arm64 x11-common all 1:7.7+24ubuntu1 [22.4 kB] 93s Get:10 http://ftpmaster.internal/ubuntu resolute/main arm64 xfonts-encodings all 1:1.0.5-0ubuntu3 [576 kB] 93s Get:11 http://ftpmaster.internal/ubuntu resolute/main arm64 xfonts-utils arm64 1:7.7+7build1 [94.8 kB] 93s Get:12 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-urw-base35 all 20200910-8build1 [10.9 MB] 93s Get:13 http://ftpmaster.internal/ubuntu resolute/main arm64 fontconfig-config arm64 2.15.0-2.4ubuntu1 [38.2 kB] 93s Get:14 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-extra all 2.37-8build1 [1944 kB] 93s Get:15 http://ftpmaster.internal/ubuntu resolute/universe arm64 fonts-lyx all 2.5.0~RC2-3 [171 kB] 93s Get:16 http://ftpmaster.internal/ubuntu resolute/universe arm64 libaec0 arm64 1.1.4-2 [22.2 kB] 93s Get:17 http://ftpmaster.internal/ubuntu resolute/main arm64 libfontconfig1 arm64 2.15.0-2.4ubuntu1 [143 kB] 93s Get:18 http://ftpmaster.internal/ubuntu resolute/main arm64 libpixman-1-0 arm64 0.46.4-1 [204 kB] 93s Get:19 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-render0 arm64 1.17.0-2build1 [18.1 kB] 93s Get:20 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-shm0 arm64 1.17.0-2build1 [6234 B] 93s Get:21 http://ftpmaster.internal/ubuntu resolute/main arm64 libxrender1 arm64 1:0.9.12-1 [19.5 kB] 93s Get:22 http://ftpmaster.internal/ubuntu resolute/main arm64 libcairo2 arm64 1.18.4-3 [556 kB] 93s Get:23 http://ftpmaster.internal/ubuntu resolute/main arm64 libdeflate0 arm64 1.23-2 [46.4 kB] 93s Get:24 http://ftpmaster.internal/ubuntu resolute/main arm64 libgomp1 arm64 15.2.0-11ubuntu1 [147 kB] 93s Get:25 http://ftpmaster.internal/ubuntu resolute/main arm64 libgraphite2-3 arm64 1.3.14-11ubuntu1 [72.1 kB] 93s Get:26 http://ftpmaster.internal/ubuntu resolute/main arm64 libharfbuzz0b arm64 12.3.0-4 [518 kB] 93s Get:27 http://ftpmaster.internal/ubuntu resolute/universe arm64 libsz2 arm64 1.1.4-2 [5258 B] 93s Get:28 http://ftpmaster.internal/ubuntu resolute/universe arm64 libhdf5-310 arm64 1.14.5+repack-4 [1286 kB] 94s Get:29 http://ftpmaster.internal/ubuntu resolute/universe arm64 libhdf5-hl-310 arm64 1.14.5+repack-4 [58.9 kB] 94s Get:30 http://ftpmaster.internal/ubuntu resolute/universe arm64 libhtscodecs2 arm64 1.6.1-2 [82.7 kB] 94s Get:31 http://ftpmaster.internal/ubuntu resolute/universe arm64 libhts3t64 arm64 1.22.1+ds2-1 [442 kB] 94s Get:32 http://ftpmaster.internal/ubuntu resolute/main arm64 libimagequant0 arm64 2.18.0-1build1 [37.1 kB] 94s Get:33 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg-turbo8 arm64 2.1.5-4ubuntu2 [165 kB] 94s Get:34 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 94s Get:35 http://ftpmaster.internal/ubuntu resolute/main arm64 liblcms2-2 arm64 2.17-1 [170 kB] 94s Get:36 http://ftpmaster.internal/ubuntu resolute/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu2 [174 kB] 94s Get:37 http://ftpmaster.internal/ubuntu resolute/universe arm64 liblzf1 arm64 3.6-4build1 [7330 B] 94s Get:38 http://ftpmaster.internal/ubuntu resolute/universe arm64 libqhull-r8.0 arm64 2020.2-8 [191 kB] 94s Get:39 http://ftpmaster.internal/ubuntu resolute/main arm64 libraqm0 arm64 0.10.3-1 [15.0 kB] 94s Get:40 http://ftpmaster.internal/ubuntu resolute/main arm64 libsharpyuv0 arm64 1.5.0-0.1build1 [16.7 kB] 94s Get:41 http://ftpmaster.internal/ubuntu resolute/main arm64 libtcl8.6 arm64 8.6.17+dfsg-1 [1024 kB] 94s Get:42 http://ftpmaster.internal/ubuntu resolute/main arm64 libjbig0 arm64 2.1-6.1ubuntu3 [29.2 kB] 94s Get:43 http://ftpmaster.internal/ubuntu resolute/main arm64 libwebp7 arm64 1.5.0-0.1build1 [205 kB] 94s Get:44 http://ftpmaster.internal/ubuntu resolute/main arm64 libtiff6 arm64 4.7.0-3ubuntu3 [196 kB] 94s Get:45 http://ftpmaster.internal/ubuntu resolute/main arm64 libxft2 arm64 2.3.6-1build2 [43.2 kB] 94s Get:46 http://ftpmaster.internal/ubuntu resolute/main arm64 libxss1 arm64 1:1.2.3-1build4 [7102 B] 94s Get:47 http://ftpmaster.internal/ubuntu resolute/main arm64 libtk8.6 arm64 8.6.17-1 [811 kB] 94s Get:48 http://ftpmaster.internal/ubuntu resolute/main arm64 libwebpdemux2 arm64 1.5.0-0.1build1 [12.5 kB] 94s Get:49 http://ftpmaster.internal/ubuntu resolute/main arm64 libwebpmux3 arm64 1.5.0-0.1build1 [25.2 kB] 94s Get:50 http://ftpmaster.internal/ubuntu resolute/main arm64 libxslt1.1 arm64 1.1.43-0.3 [172 kB] 94s Get:51 http://ftpmaster.internal/ubuntu resolute/universe arm64 libzopfli1 arm64 1.0.3-3 [108 kB] 94s Get:52 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-sklearn-lib arm64 1.7.2+dfsg-4 [4039 kB] 94s Get:53 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-joblib all 1.5.2-1 [210 kB] 94s Get:54 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-decorator all 5.2.1-2 [28.1 kB] 94s Get:55 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-scipy arm64 1.16.3-3 [17.4 MB] 95s Get:56 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-threadpoolctl all 3.1.0-1build1 [20.7 kB] 95s Get:57 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-sklearn all 1.7.2+dfsg-4 [2616 kB] 95s Get:58 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-h5py-serial arm64 3.15.1-4 [1483 kB] 95s Get:59 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-h5py all 3.15.1-4 [11.3 kB] 95s Get:60 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-charset-normalizer arm64 3.4.4-2 [169 kB] 95s Get:61 http://ftpmaster.internal/ubuntu resolute/main arm64 python3.13-tk arm64 3.13.11-1 [106 kB] 95s Get:62 http://ftpmaster.internal/ubuntu resolute/main arm64 python3.14-tk arm64 3.14.2-1 [108 kB] 95s Get:63 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 python3-tk arm64 3.14.2-1 [11.2 kB] 95s Get:64 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pil.imagetk arm64 12.0.0-1ubuntu1 [9532 B] 95s Get:65 http://ftpmaster.internal/ubuntu resolute/main arm64 libopenjp2-7 arm64 2.5.4-1 [180 kB] 95s Get:66 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-pil arm64 12.0.0-1ubuntu1 [486 kB] 95s Get:67 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-cairo arm64 1.27.0-2build1 [141 kB] 95s Get:68 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-freetype all 2.5.1-2 [92.2 kB] 95s Get:69 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-rlpycairo all 0.3.0-4 [9332 B] 95s Get:70 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-reportlab all 4.4.9-1 [1149 kB] 95s Get:71 http://ftpmaster.internal/ubuntu resolute/main arm64 sgml-base all 1.31+nmu1 [11.0 kB] 95s Get:72 http://ftpmaster.internal/ubuntu resolute/main arm64 xml-core all 0.19build1 [20.3 kB] 95s Get:73 http://ftpmaster.internal/ubuntu resolute/universe arm64 w3c-sgml-lib all 1.3-3build1 [278 kB] 95s Get:74 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-biopython arm64 1.86+dfsg-1 [1675 kB] 95s Get:75 http://ftpmaster.internal/ubuntu resolute/universe arm64 python-matplotlib-data all 3.10.7+dfsg1-1 [2930 kB] 95s Get:76 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-contourpy arm64 1.3.3-1 [245 kB] 95s Get:77 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-cycler all 0.12.1-2 [9850 B] 95s Get:78 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-brotli arm64 1.1.0-2build6 [343 kB] 95s Get:79 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-lxml arm64 6.0.2-1 [2155 kB] 95s Get:80 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-lz4 arm64 4.4.5+dfsg-1 [27.9 kB] 95s Get:81 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-mpmath all 1.3.0-2 [423 kB] 95s Get:82 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-sympy all 1.14.0-2 [4306 kB] 95s Get:83 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-ufolib2 all 0.18.1+dfsg1-1 [33.7 kB] 95s Get:84 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-unicodedata2 arm64 16.0.0+ds-1build1 [398 kB] 95s Get:85 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-zopfli arm64 0.4.0-1 [10.8 kB] 95s Get:86 http://ftpmaster.internal/ubuntu resolute/universe arm64 unicode-data all 16.0.0-1build1 [9543 kB] 96s Get:87 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-fonttools arm64 4.61.1-3 [1680 kB] 96s Get:88 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-kiwisolver arm64 1.4.10~rc0-1 [60.1 kB] 96s Get:89 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-matplotlib arm64 3.10.7+dfsg1-1 [17.1 MB] 96s Get:90 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pytz all 2025.2-5 [32.4 kB] 96s Get:91 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pandas-lib arm64 2.3.3+dfsg-3 [6290 kB] 97s Get:92 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pandas all 2.3.3+dfsg-3 [2948 kB] 97s Get:93 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-seaborn all 0.13.2-6 [225 kB] 97s Get:94 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pysam arm64 0.23.3+ds-2 [4348 kB] 97s Get:95 http://ftpmaster.internal/ubuntu resolute/universe arm64 mcaller all 1.0.3+git20210624.b415090-3build1 [19.5 kB] 98s Fetched 113 MB in 5s (21.1 MB/s) 98s Selecting previously unselected package python3-numpy-dev:arm64. 98s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 135970 files and directories currently installed.) 98s Preparing to unpack .../00-python3-numpy-dev_1%3a2.3.5+ds-3_arm64.deb ... 98s Unpacking python3-numpy-dev:arm64 (1:2.3.5+ds-3) ... 98s Selecting previously unselected package libblas3:arm64. 98s Preparing to unpack .../01-libblas3_3.12.1-7ubuntu1_arm64.deb ... 98s Unpacking libblas3:arm64 (3.12.1-7ubuntu1) ... 98s Selecting previously unselected package libgfortran5:arm64. 98s Preparing to unpack .../02-libgfortran5_15.2.0-11ubuntu1_arm64.deb ... 98s Unpacking libgfortran5:arm64 (15.2.0-11ubuntu1) ... 98s Selecting previously unselected package liblapack3:arm64. 98s Preparing to unpack .../03-liblapack3_3.12.1-7ubuntu1_arm64.deb ... 98s Unpacking liblapack3:arm64 (3.12.1-7ubuntu1) ... 98s Selecting previously unselected package python3-numpy. 98s Preparing to unpack .../04-python3-numpy_1%3a2.3.5+ds-3_arm64.deb ... 98s Unpacking python3-numpy (1:2.3.5+ds-3) ... 98s Selecting previously unselected package fonts-dejavu-mono. 98s Preparing to unpack .../05-fonts-dejavu-mono_2.37-8build1_all.deb ... 98s Unpacking fonts-dejavu-mono (2.37-8build1) ... 98s Selecting previously unselected package fonts-dejavu-core. 98s Preparing to unpack .../06-fonts-dejavu-core_2.37-8build1_all.deb ... 98s Unpacking fonts-dejavu-core (2.37-8build1) ... 98s Selecting previously unselected package libfontenc1:arm64. 98s Preparing to unpack .../07-libfontenc1_1%3a1.1.8-1build2_arm64.deb ... 98s Unpacking libfontenc1:arm64 (1:1.1.8-1build2) ... 98s Selecting previously unselected package x11-common. 98s Preparing to unpack .../08-x11-common_1%3a7.7+24ubuntu1_all.deb ... 98s Unpacking x11-common (1:7.7+24ubuntu1) ... 98s Selecting previously unselected package xfonts-encodings. 98s Preparing to unpack .../09-xfonts-encodings_1%3a1.0.5-0ubuntu3_all.deb ... 98s Unpacking xfonts-encodings (1:1.0.5-0ubuntu3) ... 98s Selecting previously unselected package xfonts-utils. 98s Preparing to unpack .../10-xfonts-utils_1%3a7.7+7build1_arm64.deb ... 98s Unpacking xfonts-utils (1:7.7+7build1) ... 98s Selecting previously unselected package fonts-urw-base35. 98s Preparing to unpack .../11-fonts-urw-base35_20200910-8build1_all.deb ... 99s Unpacking fonts-urw-base35 (20200910-8build1) ... 99s Selecting previously unselected package fontconfig-config. 99s Preparing to unpack .../12-fontconfig-config_2.15.0-2.4ubuntu1_arm64.deb ... 99s Unpacking fontconfig-config (2.15.0-2.4ubuntu1) ... 99s Selecting previously unselected package fonts-dejavu-extra. 99s Preparing to unpack .../13-fonts-dejavu-extra_2.37-8build1_all.deb ... 99s Unpacking fonts-dejavu-extra (2.37-8build1) ... 99s Selecting previously unselected package fonts-lyx. 99s Preparing to unpack .../14-fonts-lyx_2.5.0~RC2-3_all.deb ... 99s Unpacking fonts-lyx (2.5.0~RC2-3) ... 99s Selecting previously unselected package libaec0:arm64. 99s Preparing to unpack .../15-libaec0_1.1.4-2_arm64.deb ... 99s Unpacking libaec0:arm64 (1.1.4-2) ... 99s Selecting previously unselected package libfontconfig1:arm64. 99s Preparing to unpack .../16-libfontconfig1_2.15.0-2.4ubuntu1_arm64.deb ... 99s Unpacking libfontconfig1:arm64 (2.15.0-2.4ubuntu1) ... 99s Selecting previously unselected package libpixman-1-0:arm64. 99s Preparing to unpack .../17-libpixman-1-0_0.46.4-1_arm64.deb ... 99s Unpacking libpixman-1-0:arm64 (0.46.4-1) ... 99s Selecting previously unselected package libxcb-render0:arm64. 99s Preparing to unpack .../18-libxcb-render0_1.17.0-2build1_arm64.deb ... 99s Unpacking libxcb-render0:arm64 (1.17.0-2build1) ... 99s Selecting previously unselected package libxcb-shm0:arm64. 99s Preparing to unpack .../19-libxcb-shm0_1.17.0-2build1_arm64.deb ... 99s Unpacking libxcb-shm0:arm64 (1.17.0-2build1) ... 99s Selecting previously unselected package libxrender1:arm64. 99s Preparing to unpack .../20-libxrender1_1%3a0.9.12-1_arm64.deb ... 99s Unpacking libxrender1:arm64 (1:0.9.12-1) ... 99s Selecting previously unselected package libcairo2:arm64. 99s Preparing to unpack .../21-libcairo2_1.18.4-3_arm64.deb ... 99s Unpacking libcairo2:arm64 (1.18.4-3) ... 99s Selecting previously unselected package libdeflate0:arm64. 99s Preparing to unpack .../22-libdeflate0_1.23-2_arm64.deb ... 99s Unpacking libdeflate0:arm64 (1.23-2) ... 99s Selecting previously unselected package libgomp1:arm64. 99s Preparing to unpack .../23-libgomp1_15.2.0-11ubuntu1_arm64.deb ... 99s Unpacking libgomp1:arm64 (15.2.0-11ubuntu1) ... 99s Selecting previously unselected package libgraphite2-3:arm64. 99s Preparing to unpack .../24-libgraphite2-3_1.3.14-11ubuntu1_arm64.deb ... 99s Unpacking libgraphite2-3:arm64 (1.3.14-11ubuntu1) ... 99s Selecting previously unselected package libharfbuzz0b:arm64. 100s Preparing to unpack .../25-libharfbuzz0b_12.3.0-4_arm64.deb ... 100s Unpacking libharfbuzz0b:arm64 (12.3.0-4) ... 100s Selecting previously unselected package libsz2:arm64. 100s Preparing to unpack .../26-libsz2_1.1.4-2_arm64.deb ... 100s Unpacking libsz2:arm64 (1.1.4-2) ... 100s Selecting previously unselected package libhdf5-310:arm64. 100s Preparing to unpack .../27-libhdf5-310_1.14.5+repack-4_arm64.deb ... 100s Unpacking libhdf5-310:arm64 (1.14.5+repack-4) ... 100s Selecting previously unselected package libhdf5-hl-310:arm64. 100s Preparing to unpack .../28-libhdf5-hl-310_1.14.5+repack-4_arm64.deb ... 100s Unpacking libhdf5-hl-310:arm64 (1.14.5+repack-4) ... 100s Selecting previously unselected package libhtscodecs2:arm64. 100s Preparing to unpack .../29-libhtscodecs2_1.6.1-2_arm64.deb ... 100s Unpacking libhtscodecs2:arm64 (1.6.1-2) ... 100s Selecting previously unselected package libhts3t64:arm64. 100s Preparing to unpack .../30-libhts3t64_1.22.1+ds2-1_arm64.deb ... 100s Unpacking libhts3t64:arm64 (1.22.1+ds2-1) ... 100s Selecting previously unselected package libimagequant0:arm64. 100s Preparing to unpack .../31-libimagequant0_2.18.0-1build1_arm64.deb ... 100s Unpacking libimagequant0:arm64 (2.18.0-1build1) ... 100s Selecting previously unselected package libjpeg-turbo8:arm64. 100s Preparing to unpack .../32-libjpeg-turbo8_2.1.5-4ubuntu2_arm64.deb ... 100s Unpacking libjpeg-turbo8:arm64 (2.1.5-4ubuntu2) ... 100s Selecting previously unselected package libjpeg8:arm64. 100s Preparing to unpack .../33-libjpeg8_8c-2ubuntu11_arm64.deb ... 100s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 100s Selecting previously unselected package liblcms2-2:arm64. 100s Preparing to unpack .../34-liblcms2-2_2.17-1_arm64.deb ... 100s Unpacking liblcms2-2:arm64 (2.17-1) ... 100s Selecting previously unselected package liblerc4:arm64. 100s Preparing to unpack .../35-liblerc4_4.0.0+ds-5ubuntu2_arm64.deb ... 100s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu2) ... 100s Selecting previously unselected package liblzf1:arm64. 100s Preparing to unpack .../36-liblzf1_3.6-4build1_arm64.deb ... 100s Unpacking liblzf1:arm64 (3.6-4build1) ... 100s Selecting previously unselected package libqhull-r8.0:arm64. 100s Preparing to unpack .../37-libqhull-r8.0_2020.2-8_arm64.deb ... 100s Unpacking libqhull-r8.0:arm64 (2020.2-8) ... 100s Selecting previously unselected package libraqm0:arm64. 100s Preparing to unpack .../38-libraqm0_0.10.3-1_arm64.deb ... 100s Unpacking libraqm0:arm64 (0.10.3-1) ... 100s Selecting previously unselected package libsharpyuv0:arm64. 100s Preparing to unpack .../39-libsharpyuv0_1.5.0-0.1build1_arm64.deb ... 100s Unpacking libsharpyuv0:arm64 (1.5.0-0.1build1) ... 100s Selecting previously unselected package libtcl8.6:arm64. 100s Preparing to unpack .../40-libtcl8.6_8.6.17+dfsg-1_arm64.deb ... 100s Unpacking libtcl8.6:arm64 (8.6.17+dfsg-1) ... 100s Selecting previously unselected package libjbig0:arm64. 100s Preparing to unpack .../41-libjbig0_2.1-6.1ubuntu3_arm64.deb ... 100s Unpacking libjbig0:arm64 (2.1-6.1ubuntu3) ... 100s Selecting previously unselected package libwebp7:arm64. 100s Preparing to unpack .../42-libwebp7_1.5.0-0.1build1_arm64.deb ... 100s Unpacking libwebp7:arm64 (1.5.0-0.1build1) ... 100s Selecting previously unselected package libtiff6:arm64. 100s Preparing to unpack .../43-libtiff6_4.7.0-3ubuntu3_arm64.deb ... 100s Unpacking libtiff6:arm64 (4.7.0-3ubuntu3) ... 100s Selecting previously unselected package libxft2:arm64. 100s Preparing to unpack .../44-libxft2_2.3.6-1build2_arm64.deb ... 100s Unpacking libxft2:arm64 (2.3.6-1build2) ... 100s Selecting previously unselected package libxss1:arm64. 100s Preparing to unpack .../45-libxss1_1%3a1.2.3-1build4_arm64.deb ... 100s Unpacking libxss1:arm64 (1:1.2.3-1build4) ... 100s Selecting previously unselected package libtk8.6:arm64. 100s Preparing to unpack .../46-libtk8.6_8.6.17-1_arm64.deb ... 100s Unpacking libtk8.6:arm64 (8.6.17-1) ... 101s Selecting previously unselected package libwebpdemux2:arm64. 101s Preparing to unpack .../47-libwebpdemux2_1.5.0-0.1build1_arm64.deb ... 101s Unpacking libwebpdemux2:arm64 (1.5.0-0.1build1) ... 101s Selecting previously unselected package libwebpmux3:arm64. 101s Preparing to unpack .../48-libwebpmux3_1.5.0-0.1build1_arm64.deb ... 101s Unpacking libwebpmux3:arm64 (1.5.0-0.1build1) ... 101s Selecting previously unselected package libxslt1.1:arm64. 101s Preparing to unpack .../49-libxslt1.1_1.1.43-0.3_arm64.deb ... 101s Unpacking libxslt1.1:arm64 (1.1.43-0.3) ... 101s Selecting previously unselected package libzopfli1. 101s Preparing to unpack .../50-libzopfli1_1.0.3-3_arm64.deb ... 101s Unpacking libzopfli1 (1.0.3-3) ... 101s Selecting previously unselected package python3-sklearn-lib:arm64. 101s Preparing to unpack .../51-python3-sklearn-lib_1.7.2+dfsg-4_arm64.deb ... 101s Unpacking python3-sklearn-lib:arm64 (1.7.2+dfsg-4) ... 101s Selecting previously unselected package python3-joblib. 101s Preparing to unpack .../52-python3-joblib_1.5.2-1_all.deb ... 101s Unpacking python3-joblib (1.5.2-1) ... 101s Selecting previously unselected package python3-decorator. 101s Preparing to unpack .../53-python3-decorator_5.2.1-2_all.deb ... 101s Unpacking python3-decorator (5.2.1-2) ... 101s Selecting previously unselected package python3-scipy. 101s Preparing to unpack .../54-python3-scipy_1.16.3-3_arm64.deb ... 101s Unpacking python3-scipy (1.16.3-3) ... 101s Selecting previously unselected package python3-threadpoolctl. 102s Preparing to unpack .../55-python3-threadpoolctl_3.1.0-1build1_all.deb ... 102s Unpacking python3-threadpoolctl (3.1.0-1build1) ... 102s Selecting previously unselected package python3-sklearn. 102s Preparing to unpack .../56-python3-sklearn_1.7.2+dfsg-4_all.deb ... 102s Unpacking python3-sklearn (1.7.2+dfsg-4) ... 102s Selecting previously unselected package python3-h5py-serial. 102s Preparing to unpack .../57-python3-h5py-serial_3.15.1-4_arm64.deb ... 102s Unpacking python3-h5py-serial (3.15.1-4) ... 102s Selecting previously unselected package python3-h5py. 102s Preparing to unpack .../58-python3-h5py_3.15.1-4_all.deb ... 102s Unpacking python3-h5py (3.15.1-4) ... 102s Selecting previously unselected package python3-charset-normalizer. 102s Preparing to unpack .../59-python3-charset-normalizer_3.4.4-2_arm64.deb ... 102s Unpacking python3-charset-normalizer (3.4.4-2) ... 102s Selecting previously unselected package python3.13-tk. 102s Preparing to unpack .../60-python3.13-tk_3.13.11-1_arm64.deb ... 102s Unpacking python3.13-tk (3.13.11-1) ... 102s Selecting previously unselected package python3.14-tk. 102s Preparing to unpack .../61-python3.14-tk_3.14.2-1_arm64.deb ... 102s Unpacking python3.14-tk (3.14.2-1) ... 102s Selecting previously unselected package python3-tk. 102s Preparing to unpack .../62-python3-tk_3.14.2-1_arm64.deb ... 102s Unpacking python3-tk (3.14.2-1) ... 102s Selecting previously unselected package python3-pil.imagetk:arm64. 102s Preparing to unpack .../63-python3-pil.imagetk_12.0.0-1ubuntu1_arm64.deb ... 102s Unpacking python3-pil.imagetk:arm64 (12.0.0-1ubuntu1) ... 102s Selecting previously unselected package libopenjp2-7:arm64. 102s Preparing to unpack .../64-libopenjp2-7_2.5.4-1_arm64.deb ... 102s Unpacking libopenjp2-7:arm64 (2.5.4-1) ... 102s Selecting previously unselected package python3-pil:arm64. 102s Preparing to unpack .../65-python3-pil_12.0.0-1ubuntu1_arm64.deb ... 102s Unpacking python3-pil:arm64 (12.0.0-1ubuntu1) ... 102s Selecting previously unselected package python3-cairo. 102s Preparing to unpack .../66-python3-cairo_1.27.0-2build1_arm64.deb ... 102s Unpacking python3-cairo (1.27.0-2build1) ... 102s Selecting previously unselected package python3-freetype. 102s Preparing to unpack .../67-python3-freetype_2.5.1-2_all.deb ... 102s Unpacking python3-freetype (2.5.1-2) ... 102s Selecting previously unselected package python3-rlpycairo. 102s Preparing to unpack .../68-python3-rlpycairo_0.3.0-4_all.deb ... 102s Unpacking python3-rlpycairo (0.3.0-4) ... 102s Selecting previously unselected package python3-reportlab. 102s Preparing to unpack .../69-python3-reportlab_4.4.9-1_all.deb ... 102s Unpacking python3-reportlab (4.4.9-1) ... 102s Selecting previously unselected package sgml-base. 102s Preparing to unpack .../70-sgml-base_1.31+nmu1_all.deb ... 102s Unpacking sgml-base (1.31+nmu1) ... 102s Selecting previously unselected package xml-core. 102s Preparing to unpack .../71-xml-core_0.19build1_all.deb ... 102s Unpacking xml-core (0.19build1) ... 103s Selecting previously unselected package w3c-sgml-lib. 103s Preparing to unpack .../72-w3c-sgml-lib_1.3-3build1_all.deb ... 103s Unpacking w3c-sgml-lib (1.3-3build1) ... 103s Selecting previously unselected package python3-biopython. 103s Preparing to unpack .../73-python3-biopython_1.86+dfsg-1_arm64.deb ... 103s Unpacking python3-biopython (1.86+dfsg-1) ... 103s Selecting previously unselected package python-matplotlib-data. 103s Preparing to unpack .../74-python-matplotlib-data_3.10.7+dfsg1-1_all.deb ... 103s Unpacking python-matplotlib-data (3.10.7+dfsg1-1) ... 103s Selecting previously unselected package python3-contourpy. 103s Preparing to unpack .../75-python3-contourpy_1.3.3-1_arm64.deb ... 103s Unpacking python3-contourpy (1.3.3-1) ... 103s Selecting previously unselected package python3-cycler. 103s Preparing to unpack .../76-python3-cycler_0.12.1-2_all.deb ... 103s Unpacking python3-cycler (0.12.1-2) ... 103s Selecting previously unselected package python3-brotli. 103s Preparing to unpack .../77-python3-brotli_1.1.0-2build6_arm64.deb ... 103s Unpacking python3-brotli (1.1.0-2build6) ... 103s Selecting previously unselected package python3-lxml:arm64. 103s Preparing to unpack .../78-python3-lxml_6.0.2-1_arm64.deb ... 103s Unpacking python3-lxml:arm64 (6.0.2-1) ... 103s Selecting previously unselected package python3-lz4. 103s Preparing to unpack .../79-python3-lz4_4.4.5+dfsg-1_arm64.deb ... 103s Unpacking python3-lz4 (4.4.5+dfsg-1) ... 103s Selecting previously unselected package python3-mpmath. 103s Preparing to unpack .../80-python3-mpmath_1.3.0-2_all.deb ... 103s Unpacking python3-mpmath (1.3.0-2) ... 103s Selecting previously unselected package python3-sympy. 103s Preparing to unpack .../81-python3-sympy_1.14.0-2_all.deb ... 103s Unpacking python3-sympy (1.14.0-2) ... 103s Selecting previously unselected package python3-ufolib2. 103s Preparing to unpack .../82-python3-ufolib2_0.18.1+dfsg1-1_all.deb ... 103s Unpacking python3-ufolib2 (0.18.1+dfsg1-1) ... 103s Selecting previously unselected package python3-unicodedata2. 104s Preparing to unpack .../83-python3-unicodedata2_16.0.0+ds-1build1_arm64.deb ... 104s Unpacking python3-unicodedata2 (16.0.0+ds-1build1) ... 104s Selecting previously unselected package python3-zopfli. 104s Preparing to unpack .../84-python3-zopfli_0.4.0-1_arm64.deb ... 104s Unpacking python3-zopfli (0.4.0-1) ... 104s Selecting previously unselected package unicode-data. 104s Preparing to unpack .../85-unicode-data_16.0.0-1build1_all.deb ... 104s Unpacking unicode-data (16.0.0-1build1) ... 104s Selecting previously unselected package python3-fonttools. 104s Preparing to unpack .../86-python3-fonttools_4.61.1-3_arm64.deb ... 104s Unpacking python3-fonttools (4.61.1-3) ... 104s Selecting previously unselected package python3-kiwisolver. 104s Preparing to unpack .../87-python3-kiwisolver_1.4.10~rc0-1_arm64.deb ... 104s Unpacking python3-kiwisolver (1.4.10~rc0-1) ... 104s Selecting previously unselected package python3-matplotlib. 104s Preparing to unpack .../88-python3-matplotlib_3.10.7+dfsg1-1_arm64.deb ... 104s Unpacking python3-matplotlib (3.10.7+dfsg1-1) ... 104s Selecting previously unselected package python3-pytz. 104s Preparing to unpack .../89-python3-pytz_2025.2-5_all.deb ... 104s Unpacking python3-pytz (2025.2-5) ... 104s Selecting previously unselected package python3-pandas-lib:arm64. 104s Preparing to unpack .../90-python3-pandas-lib_2.3.3+dfsg-3_arm64.deb ... 104s Unpacking python3-pandas-lib:arm64 (2.3.3+dfsg-3) ... 105s Selecting previously unselected package python3-pandas. 105s Preparing to unpack .../91-python3-pandas_2.3.3+dfsg-3_all.deb ... 105s Unpacking python3-pandas (2.3.3+dfsg-3) ... 105s Selecting previously unselected package python3-seaborn. 105s Preparing to unpack .../92-python3-seaborn_0.13.2-6_all.deb ... 105s Unpacking python3-seaborn (0.13.2-6) ... 105s Selecting previously unselected package python3-pysam. 105s Preparing to unpack .../93-python3-pysam_0.23.3+ds-2_arm64.deb ... 105s Unpacking python3-pysam (0.23.3+ds-2) ... 105s Selecting previously unselected package mcaller. 105s Preparing to unpack .../94-mcaller_1.0.3+git20210624.b415090-3build1_all.deb ... 105s Unpacking mcaller (1.0.3+git20210624.b415090-3build1) ... 105s Setting up libhtscodecs2:arm64 (1.6.1-2) ... 105s Setting up libgraphite2-3:arm64 (1.3.14-11ubuntu1) ... 105s Setting up liblcms2-2:arm64 (2.17-1) ... 105s Setting up libpixman-1-0:arm64 (0.46.4-1) ... 105s Setting up libsharpyuv0:arm64 (1.5.0-0.1build1) ... 105s Setting up liblerc4:arm64 (4.0.0+ds-5ubuntu2) ... 105s Setting up libxrender1:arm64 (1:0.9.12-1) ... 105s Setting up python3-joblib (1.5.2-1) ... 106s Setting up python3-lz4 (4.4.5+dfsg-1) ... 106s Setting up libxcb-render0:arm64 (1.17.0-2build1) ... 106s Setting up python3-charset-normalizer (3.4.4-2) ... 106s Setting up python3-unicodedata2 (16.0.0+ds-1build1) ... 106s Setting up fonts-lyx (2.5.0~RC2-3) ... 106s Setting up python3-threadpoolctl (3.1.0-1build1) ... 106s Setting up x11-common (1:7.7+24ubuntu1) ... 106s Setting up libdeflate0:arm64 (1.23-2) ... 106s Setting up libqhull-r8.0:arm64 (2020.2-8) ... 106s Setting up python3-pytz (2025.2-5) ... 107s Setting up libxcb-shm0:arm64 (1.17.0-2build1) ... 107s Setting up libgomp1:arm64 (15.2.0-11ubuntu1) ... 107s Setting up python3-freetype (2.5.1-2) ... 107s Setting up libjbig0:arm64 (2.1-6.1ubuntu3) ... 107s Setting up libaec0:arm64 (1.1.4-2) ... 107s Setting up unicode-data (16.0.0-1build1) ... 107s Setting up python3-decorator (5.2.1-2) ... 107s Setting up libfontenc1:arm64 (1:1.1.8-1build2) ... 107s Setting up libblas3:arm64 (3.12.1-7ubuntu1) ... 107s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 107s Setting up libzopfli1 (1.0.3-3) ... 107s Setting up python3-brotli (1.1.0-2build6) ... 107s Setting up liblzf1:arm64 (3.6-4build1) ... 107s Setting up xfonts-encodings (1:1.0.5-0ubuntu3) ... 107s Setting up python3-cycler (0.12.1-2) ... 107s Setting up libimagequant0:arm64 (2.18.0-1build1) ... 107s Setting up fonts-dejavu-mono (2.37-8build1) ... 107s Setting up python3-kiwisolver (1.4.10~rc0-1) ... 107s Setting up python3-numpy-dev:arm64 (1:2.3.5+ds-3) ... 107s Setting up libtcl8.6:arm64 (8.6.17+dfsg-1) ... 107s Setting up fonts-dejavu-core (2.37-8build1) ... 107s Setting up libjpeg-turbo8:arm64 (2.1.5-4ubuntu2) ... 107s Setting up libgfortran5:arm64 (15.2.0-11ubuntu1) ... 107s Setting up libwebp7:arm64 (1.5.0-0.1build1) ... 107s Setting up fonts-dejavu-extra (2.37-8build1) ... 107s Setting up libxslt1.1:arm64 (1.1.43-0.3) ... 107s Setting up libhts3t64:arm64 (1.22.1+ds2-1) ... 107s Setting up libopenjp2-7:arm64 (2.5.4-1) ... 107s Setting up libharfbuzz0b:arm64 (12.3.0-4) ... 107s Setting up sgml-base (1.31+nmu1) ... 107s Setting up libxss1:arm64 (1:1.2.3-1build4) ... 107s Setting up python3-mpmath (1.3.0-2) ... 108s Setting up python-matplotlib-data (3.10.7+dfsg1-1) ... 108s Setting up libwebpmux3:arm64 (1.5.0-0.1build1) ... 108s Setting up libsz2:arm64 (1.1.4-2) ... 108s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 108s Setting up python3-sympy (1.14.0-2) ... 114s /usr/lib/python3/dist-packages/sympy/testing/runtests.py:283: SyntaxWarning: 'return' in a 'finally' block 114s return p.returncode 115s Setting up liblapack3:arm64 (3.12.1-7ubuntu1) ... 115s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 115s Setting up python3-pysam (0.23.3+ds-2) ... 115s Setting up fontconfig-config (2.15.0-2.4ubuntu1) ... 115s Setting up libwebpdemux2:arm64 (1.5.0-0.1build1) ... 115s Setting up xfonts-utils (1:7.7+7build1) ... 115s Setting up python3-zopfli (0.4.0-1) ... 115s Setting up libraqm0:arm64 (0.10.3-1) ... 115s Setting up python3-numpy (1:2.3.5+ds-3) ... 118s Setting up libhdf5-310:arm64 (1.14.5+repack-4) ... 118s Setting up python3-lxml:arm64 (6.0.2-1) ... 118s Setting up libtiff6:arm64 (4.7.0-3ubuntu3) ... 118s Setting up xml-core (0.19build1) ... 118s Setting up python3-contourpy (1.3.3-1) ... 118s Setting up libfontconfig1:arm64 (2.15.0-2.4ubuntu1) ... 118s Setting up libhdf5-hl-310:arm64 (1.14.5+repack-4) ... 118s Setting up libxft2:arm64 (2.3.6-1build2) ... 118s Setting up python3-scipy (1.16.3-3) ... 123s Setting up libtk8.6:arm64 (8.6.17-1) ... 123s Setting up python3-pandas-lib:arm64 (2.3.3+dfsg-3) ... 123s Setting up python3-sklearn-lib:arm64 (1.7.2+dfsg-4) ... 123s Setting up python3-h5py-serial (3.15.1-4) ... 123s Setting up fonts-urw-base35 (20200910-8build1) ... 123s Setting up libcairo2:arm64 (1.18.4-3) ... 123s Setting up python3.13-tk (3.13.11-1) ... 123s Setting up python3-pil:arm64 (12.0.0-1ubuntu1) ... 123s Setting up python3-pandas (2.3.3+dfsg-3) ... 129s Setting up python3-h5py (3.15.1-4) ... 129s Setting up python3-sklearn (1.7.2+dfsg-4) ... 131s Setting up python3.14-tk (3.14.2-1) ... 131s Setting up python3-cairo (1.27.0-2build1) ... 131s Setting up python3-tk (3.14.2-1) ... 131s Setting up python3-pil.imagetk:arm64 (12.0.0-1ubuntu1) ... 131s Setting up python3-rlpycairo (0.3.0-4) ... 132s Setting up python3-reportlab (4.4.9-1) ... 132s Setting up python3-fonttools (4.61.1-3) ... 133s Setting up python3-ufolib2 (0.18.1+dfsg1-1) ... 134s Setting up python3-matplotlib (3.10.7+dfsg1-1) ... 135s Setting up python3-seaborn (0.13.2-6) ... 136s Processing triggers for man-db (2.13.1-1) ... 137s Processing triggers for libc-bin (2.42-2ubuntu4) ... 137s Processing triggers for sgml-base (1.31+nmu1) ... 137s Setting up w3c-sgml-lib (1.3-3build1) ... 162s Setting up python3-biopython (1.86+dfsg-1) ... 163s Setting up mcaller (1.0.3+git20210624.b415090-3build1) ... 164s autopkgtest [18:46:59]: test run-unit-test: [----------------------- 166s testdata/ 166s 1 contigs 166s 1 threads 166s thread finished processing...: 166s 35 observations 166s 35 positions 166s 0 regions with multiple methylated bases 166s 0 observations with skips included 166s 8 observations with too many skips 166s Finished extracting signals 167s testdata/ 167s 1 contigs 167s 1 threads 167s thread finished processing...: 167s 9 observations 167s 9 positions 167s 0 regions with multiple methylated bases 167s 0 observations with skips included 167s 2 observations with too many skips 167s Finished extracting signals 169s testdata/ 169s 1 contigs 169s 4 threads 171s Traceback (most recent call last): 171s File "/usr/bin/mCaller", line 187, in 171s main() 171s ~~~~^^ 171s File "/usr/bin/mCaller", line 183, in main 171s distribute_threads(args.positions,args.motif,args.tsv,read2qual,args.reference,num_refs,base,mod,args.threads,args.num_variables, 171s ~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 171s args.train,modelfile,args.skip_thresh,args.qual_thresh,args.classifier,training_tsv,args.plot_training) 171s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 171s File "/usr/bin/mCaller", line 70, in distribute_threads 171s p.start() 171s ~~~~~~~^^ 171s File "/usr/lib/python3.14/multiprocessing/process.py", line 121, in start 171s self._popen = self._Popen(self) 171s ~~~~~~~~~~~^^^^^^ 171s File "/usr/lib/python3.14/multiprocessing/context.py", line 224, in _Popen 171s return _default_context.get_context().Process._Popen(process_obj) 171s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^ 171s File "/usr/lib/python3.14/multiprocessing/context.py", line 300, in _Popen 171s return Popen(process_obj) 171s File "/usr/lib/python3.14/multiprocessing/popen_forkserver.py", line 35, in __init__ 171s super().__init__(process_obj) 171s ~~~~~~~~~~~~~~~~^^^^^^^^^^^^^ 171s File "/usr/lib/python3.14/multiprocessing/popen_fork.py", line 20, in __init__ 171s self._launch(process_obj) 171s ~~~~~~~~~~~~^^^^^^^^^^^^^ 171s File "/usr/lib/python3.14/multiprocessing/popen_forkserver.py", line 47, in _launch 171s reduction.dump(process_obj, buf) 171s ~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^ 171s File "/usr/lib/python3.14/multiprocessing/reduction.py", line 60, in dump 171s ForkingPickler(file, protocol).dump(obj) 171s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^ 171s _pickle.PicklingError: Can't pickle local object .worker at 0xff7dc0f85010> 171s when serializing dict item '_target' 171s when serializing multiprocessing.context.Process state 171s when serializing multiprocessing.context.Process object 172s autopkgtest [18:47:07]: test run-unit-test: -----------------------] 172s autopkgtest [18:47:07]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 172s run-unit-test FAIL non-zero exit status 1 172s autopkgtest [18:47:07]: @@@@@@@@@@@@@@@@@@@@ summary 172s run-unit-test FAIL non-zero exit status 1