0s autopkgtest [09:35:16]: starting date and time: 2025-12-03 09:35:16+0000 0s autopkgtest [09:35:16]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [09:35:16]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.qyqixcf0/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults --apt-upgrade mapdamage --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=python3-defaults/3.13.9-2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-17.secgroup --name adt-resolute-arm64-mapdamage-20251203-093516-juju-7f2275-prod-proposed-migration-environment-2-1adb51a1-329c-4123-8d89-98c4c72a22ac --image adt/ubuntu-resolute-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 5s Creating nova instance adt-resolute-arm64-mapdamage-20251203-093516-juju-7f2275-prod-proposed-migration-environment-2-1adb51a1-329c-4123-8d89-98c4c72a22ac from image adt/ubuntu-resolute-arm64-server-20251203.img (UUID cfeb7bb3-622b-4d7d-a373-c5ae54145875)... 73s autopkgtest [09:36:29]: testbed dpkg architecture: arm64 73s autopkgtest [09:36:29]: testbed apt version: 3.1.12 74s autopkgtest [09:36:30]: @@@@@@@@@@@@@@@@@@@@ test bed setup 74s autopkgtest [09:36:30]: testbed release detected to be: None 75s autopkgtest [09:36:31]: updating testbed package index (apt update) 77s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 79s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 79s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 79s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 79s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [147 kB] 80s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [25.2 kB] 80s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [981 kB] 81s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 Packages [194 kB] 82s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 c-n-f Metadata [6096 B] 82s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 c-n-f Metadata [120 B] 82s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 Packages [712 kB] 83s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 c-n-f Metadata [19.4 kB] 83s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 Packages [10.7 kB] 83s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 c-n-f Metadata [724 B] 84s Fetched 2220 kB in 7s (303 kB/s) 85s Reading package lists... 87s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 87s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 87s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 87s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 89s Reading package lists... 89s Reading package lists... 89s Building dependency tree... 89s Reading state information... 90s Calculating upgrade... 90s The following packages will be upgraded: 90s libpython3-stdlib python3 python3-gdbm python3-minimal 91s 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 91s Need to get 72.9 kB of archives. 91s After this operation, 2048 B of additional disk space will be used. 91s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 python3-minimal arm64 3.13.9-2 [28.1 kB] 91s Get:2 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 python3 arm64 3.13.9-2 [23.0 kB] 91s Get:3 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 libpython3-stdlib arm64 3.13.9-2 [10.8 kB] 91s Get:4 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 python3-gdbm arm64 3.13.9-2 [11.0 kB] 93s dpkg-preconfigure: unable to re-open stdin: No such file or directory 94s Fetched 72.9 kB in 2s (34.2 kB/s) 94s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 133841 files and directories currently installed.) 94s Preparing to unpack .../python3-minimal_3.13.9-2_arm64.deb ... 94s Unpacking python3-minimal (3.13.9-2) over (3.13.7-1) ... 95s Setting up python3-minimal (3.13.9-2) ... 95s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 133841 files and directories currently installed.) 95s Preparing to unpack .../python3_3.13.9-2_arm64.deb ... 95s running python pre-rtupdate hooks for python3.13... 95s Unpacking python3 (3.13.9-2) over (3.13.7-1) ... 96s Preparing to unpack .../libpython3-stdlib_3.13.9-2_arm64.deb ... 96s Unpacking libpython3-stdlib:arm64 (3.13.9-2) over (3.13.7-1) ... 96s Preparing to unpack .../python3-gdbm_3.13.9-2_arm64.deb ... 96s Unpacking python3-gdbm (3.13.9-2) over (3.13.9-1) ... 96s Setting up python3-gdbm (3.13.9-2) ... 96s Setting up libpython3-stdlib:arm64 (3.13.9-2) ... 96s Setting up python3 (3.13.9-2) ... 96s running python rtupdate hooks for python3.13... 96s running python post-rtupdate hooks for python3.13... 97s Processing triggers for man-db (2.13.1-1) ... 98s autopkgtest [09:36:54]: upgrading testbed (apt dist-upgrade and autopurge) 99s Reading package lists... 99s Building dependency tree... 99s Reading state information... 99s Calculating upgrade... 100s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 100s Reading package lists... 100s Building dependency tree... 100s Reading state information... 101s Solving dependencies... 101s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 105s autopkgtest [09:37:01]: testbed running kernel: Linux 6.17.0-6-generic #6-Ubuntu SMP PREEMPT_DYNAMIC Tue Oct 7 14:22:06 UTC 2025 105s autopkgtest [09:37:01]: @@@@@@@@@@@@@@@@@@@@ apt-source mapdamage 108s Get:1 http://ftpmaster.internal/ubuntu resolute/universe mapdamage 2.2.2+dfsg-1 (dsc) [2396 B] 108s Get:2 http://ftpmaster.internal/ubuntu resolute/universe mapdamage 2.2.2+dfsg-1 (tar) [36.2 kB] 108s Get:3 http://ftpmaster.internal/ubuntu resolute/universe mapdamage 2.2.2+dfsg-1 (diff) [7824 B] 108s gpgv: Signature made Sun Aug 25 16:49:00 2024 UTC 108s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 108s gpgv: issuer "emollier@debian.org" 108s gpgv: Can't check signature: No public key 108s dpkg-source: warning: cannot verify inline signature for ./mapdamage_2.2.2+dfsg-1.dsc: no acceptable signature found 108s autopkgtest [09:37:04]: testing package mapdamage version 2.2.2+dfsg-1 109s autopkgtest [09:37:05]: build not needed 111s autopkgtest [09:37:07]: test run-unit-test: preparing testbed 111s Reading package lists... 112s Building dependency tree... 112s Reading state information... 112s Solving dependencies... 113s The following NEW packages will be installed: 113s cpp cpp-15 cpp-15-aarch64-linux-gnu cpp-aarch64-linux-gnu fontconfig 113s fontconfig-config fonts-dejavu-core fonts-dejavu-mono gcc gcc-15 113s gcc-15-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-15 113s gfortran-15-aarch64-linux-gnu gfortran-aarch64-linux-gnu libasan8 libblas3 113s libcairo2 libcc1-0 libdatrie1 libdeflate0 libfontconfig1 libgcc-15-dev 113s libgfortran-15-dev libgfortran5 libgomp1 libgraphite2-3 libgsl-dev libgsl28 113s libgslcblas0 libharfbuzz0b libhts3t64 libhtscodecs2 libhwasan0 libice6 113s libisl23 libitm1 libjbig0 libjpeg-turbo8 libjpeg8 liblapack3 liblerc4 113s liblsan0 libmpc3 libopenblas-dev libopenblas-pthread-dev libopenblas0 113s libopenblas0-pthread libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 113s libpaper-utils libpaper2 libpixman-1-0 libsharpyuv0 libsm6 libtcl8.6 113s libthai-data libthai0 libtiff6 libtk8.6 libtsan2 libubsan1 libwebp7 113s libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64 mapdamage 113s python3-pysam r-base-core r-cran-cli r-cran-codetools r-cran-colorspace 113s r-cran-fansi r-cran-farver r-cran-foreach r-cran-gam r-cran-ggplot2 113s r-cran-glue r-cran-gtable r-cran-inline r-cran-isoband r-cran-iterators 113s r-cran-labeling r-cran-lattice r-cran-lifecycle r-cran-littler 113s r-cran-magrittr r-cran-mass r-cran-matrix r-cran-mgcv r-cran-munsell 113s r-cran-nlme r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-r6 113s r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppgsl r-cran-rlang r-cran-runit 113s r-cran-scales r-cran-tibble r-cran-utf8 r-cran-vctrs r-cran-viridislite 113s r-cran-withr seqtk unzip x11-common xdg-utils zip 115s 0 upgraded, 117 newly installed, 0 to remove and 0 not upgraded. 115s Need to get 150 MB of archives. 115s After this operation, 460 MB of additional disk space will be used. 115s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 libisl23 arm64 0.27-1 [676 kB] 117s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 libmpc3 arm64 1.3.1-2 [55.6 kB] 117s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 cpp-15-aarch64-linux-gnu arm64 15.2.0-9ubuntu1 [11.7 MB] 128s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 cpp-15 arm64 15.2.0-9ubuntu1 [1030 B] 128s Get:5 http://ftpmaster.internal/ubuntu resolute/main arm64 cpp-aarch64-linux-gnu arm64 4:15.2.0-4ubuntu1 [5736 B] 128s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 cpp arm64 4:15.2.0-4ubuntu1 [22.4 kB] 128s Get:7 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 128s Get:8 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 129s Get:9 http://ftpmaster.internal/ubuntu resolute/main arm64 fontconfig-config arm64 2.15.0-2.3ubuntu1 [38.1 kB] 129s Get:10 http://ftpmaster.internal/ubuntu resolute/main arm64 libfontconfig1 arm64 2.15.0-2.3ubuntu1 [144 kB] 129s Get:11 http://ftpmaster.internal/ubuntu resolute/main arm64 fontconfig arm64 2.15.0-2.3ubuntu1 [191 kB] 129s Get:12 http://ftpmaster.internal/ubuntu resolute/main arm64 libcc1-0 arm64 15.2.0-9ubuntu1 [49.0 kB] 129s Get:13 http://ftpmaster.internal/ubuntu resolute/main arm64 libgomp1 arm64 15.2.0-9ubuntu1 [147 kB] 129s Get:14 http://ftpmaster.internal/ubuntu resolute/main arm64 libitm1 arm64 15.2.0-9ubuntu1 [28.0 kB] 129s Get:15 http://ftpmaster.internal/ubuntu resolute/main arm64 libasan8 arm64 15.2.0-9ubuntu1 [2922 kB] 131s Get:16 http://ftpmaster.internal/ubuntu resolute/main arm64 liblsan0 arm64 15.2.0-9ubuntu1 [1316 kB] 132s Get:17 http://ftpmaster.internal/ubuntu resolute/main arm64 libtsan2 arm64 15.2.0-9ubuntu1 [2689 kB] 133s Get:18 http://ftpmaster.internal/ubuntu resolute/main arm64 libubsan1 arm64 15.2.0-9ubuntu1 [1175 kB] 135s Get:19 http://ftpmaster.internal/ubuntu resolute/main arm64 libhwasan0 arm64 15.2.0-9ubuntu1 [1638 kB] 136s Get:20 http://ftpmaster.internal/ubuntu resolute/main arm64 libgcc-15-dev arm64 15.2.0-9ubuntu1 [2601 kB] 137s Get:21 http://ftpmaster.internal/ubuntu resolute/main arm64 gcc-15-aarch64-linux-gnu arm64 15.2.0-9ubuntu1 [23.1 MB] 139s Get:22 http://ftpmaster.internal/ubuntu resolute/main arm64 gcc-15 arm64 15.2.0-9ubuntu1 [516 kB] 139s Get:23 http://ftpmaster.internal/ubuntu resolute/main arm64 gcc-aarch64-linux-gnu arm64 4:15.2.0-4ubuntu1 [1206 B] 139s Get:24 http://ftpmaster.internal/ubuntu resolute/main arm64 gcc arm64 4:15.2.0-4ubuntu1 [5016 B] 139s Get:25 http://ftpmaster.internal/ubuntu resolute/main arm64 libgfortran5 arm64 15.2.0-9ubuntu1 [450 kB] 139s Get:26 http://ftpmaster.internal/ubuntu resolute/main arm64 libgfortran-15-dev arm64 15.2.0-9ubuntu1 [489 kB] 139s Get:27 http://ftpmaster.internal/ubuntu resolute/main arm64 gfortran-15-aarch64-linux-gnu arm64 15.2.0-9ubuntu1 [12.5 MB] 140s Get:28 http://ftpmaster.internal/ubuntu resolute/main arm64 gfortran-15 arm64 15.2.0-9ubuntu1 [17.9 kB] 140s Get:29 http://ftpmaster.internal/ubuntu resolute/main arm64 gfortran-aarch64-linux-gnu arm64 4:15.2.0-4ubuntu1 [1022 B] 140s Get:30 http://ftpmaster.internal/ubuntu resolute/main arm64 gfortran arm64 4:15.2.0-4ubuntu1 [1160 B] 140s Get:31 http://ftpmaster.internal/ubuntu resolute/main arm64 libblas3 arm64 3.12.1-7 [181 kB] 140s Get:32 http://ftpmaster.internal/ubuntu resolute/main arm64 libpixman-1-0 arm64 0.46.4-1 [204 kB] 140s Get:33 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-render0 arm64 1.17.0-2build1 [18.1 kB] 140s Get:34 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-shm0 arm64 1.17.0-2build1 [6234 B] 140s Get:35 http://ftpmaster.internal/ubuntu resolute/main arm64 libxrender1 arm64 1:0.9.12-1 [19.5 kB] 140s Get:36 http://ftpmaster.internal/ubuntu resolute/main arm64 libcairo2 arm64 1.18.4-1build1 [592 kB] 140s Get:37 http://ftpmaster.internal/ubuntu resolute/main arm64 libdatrie1 arm64 0.2.14-1 [19.6 kB] 140s Get:38 http://ftpmaster.internal/ubuntu resolute/main arm64 libdeflate0 arm64 1.23-2 [46.4 kB] 140s Get:39 http://ftpmaster.internal/ubuntu resolute/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB] 140s Get:40 http://ftpmaster.internal/ubuntu resolute/universe arm64 libgslcblas0 arm64 2.8+dfsg-5.1ubuntu1 [96.3 kB] 140s Get:41 http://ftpmaster.internal/ubuntu resolute/universe arm64 libgsl28 arm64 2.8+dfsg-5.1ubuntu1 [1029 kB] 140s Get:42 http://ftpmaster.internal/ubuntu resolute/universe arm64 libgsl-dev arm64 2.8+dfsg-5.1ubuntu1 [1350 kB] 140s Get:43 http://ftpmaster.internal/ubuntu resolute/main arm64 libharfbuzz0b arm64 12.1.0-1 [523 kB] 140s Get:44 http://ftpmaster.internal/ubuntu resolute/universe arm64 libhtscodecs2 arm64 1.6.1-2 [82.7 kB] 140s Get:45 http://ftpmaster.internal/ubuntu resolute/universe arm64 libhts3t64 arm64 1.22.1+ds2-1 [442 kB] 140s Get:46 http://ftpmaster.internal/ubuntu resolute/main arm64 x11-common all 1:7.7+24ubuntu1 [22.4 kB] 140s Get:47 http://ftpmaster.internal/ubuntu resolute/main arm64 libice6 arm64 2:1.1.1-1 [42.3 kB] 140s Get:48 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg-turbo8 arm64 2.1.5-4ubuntu2 [165 kB] 140s Get:49 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 140s Get:50 http://ftpmaster.internal/ubuntu resolute/universe arm64 libopenblas0-pthread arm64 0.3.30+ds-3 [4307 kB] 142s Get:51 http://ftpmaster.internal/ubuntu resolute/main arm64 liblapack3 arm64 3.12.1-7 [2300 kB] 142s Get:52 http://ftpmaster.internal/ubuntu resolute/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB] 142s Get:53 http://ftpmaster.internal/ubuntu resolute/universe arm64 libopenblas0 arm64 0.3.30+ds-3 [6306 B] 142s Get:54 http://ftpmaster.internal/ubuntu resolute/universe arm64 libopenblas-pthread-dev arm64 0.3.30+ds-3 [4259 kB] 142s Get:55 http://ftpmaster.internal/ubuntu resolute/universe arm64 libopenblas-dev arm64 0.3.30+ds-3 [21.3 kB] 143s Get:56 http://ftpmaster.internal/ubuntu resolute/main arm64 libthai-data all 0.1.29-2build2 [153 kB] 143s Get:57 http://ftpmaster.internal/ubuntu resolute/main arm64 libthai0 arm64 0.1.29-2build2 [18.4 kB] 143s Get:58 http://ftpmaster.internal/ubuntu resolute/main arm64 libpango-1.0-0 arm64 1.56.3-2 [237 kB] 143s Get:59 http://ftpmaster.internal/ubuntu resolute/main arm64 libpangoft2-1.0-0 arm64 1.56.3-2 [50.2 kB] 143s Get:60 http://ftpmaster.internal/ubuntu resolute/main arm64 libpangocairo-1.0-0 arm64 1.56.3-2 [27.7 kB] 143s Get:61 http://ftpmaster.internal/ubuntu resolute/main arm64 libpaper2 arm64 2.2.5-0.3 [17.3 kB] 143s Get:62 http://ftpmaster.internal/ubuntu resolute/main arm64 libpaper-utils arm64 2.2.5-0.3 [15.4 kB] 143s Get:63 http://ftpmaster.internal/ubuntu resolute/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB] 143s Get:64 http://ftpmaster.internal/ubuntu resolute/main arm64 libsm6 arm64 2:1.2.6-1 [16.6 kB] 143s Get:65 http://ftpmaster.internal/ubuntu resolute/main arm64 libtcl8.6 arm64 8.6.17+dfsg-1 [1024 kB] 143s Get:66 http://ftpmaster.internal/ubuntu resolute/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB] 143s Get:67 http://ftpmaster.internal/ubuntu resolute/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB] 143s Get:68 http://ftpmaster.internal/ubuntu resolute/main arm64 libtiff6 arm64 4.7.0-3ubuntu3 [196 kB] 143s Get:69 http://ftpmaster.internal/ubuntu resolute/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB] 143s Get:70 http://ftpmaster.internal/ubuntu resolute/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B] 143s Get:71 http://ftpmaster.internal/ubuntu resolute/main arm64 libtk8.6 arm64 8.6.17-1 [811 kB] 143s Get:72 http://ftpmaster.internal/ubuntu resolute/main arm64 libxt6t64 arm64 1:1.2.1-1.3 [168 kB] 143s Get:73 http://ftpmaster.internal/ubuntu resolute/main arm64 zip arm64 3.0-15ubuntu2 [175 kB] 143s Get:74 http://ftpmaster.internal/ubuntu resolute/main arm64 unzip arm64 6.0-28ubuntu7 [176 kB] 143s Get:75 http://ftpmaster.internal/ubuntu resolute/main arm64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 143s Get:76 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-base-core arm64 4.5.2-1 [28.6 MB] 145s Get:77 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-codetools all 0.2-20-1 [90.5 kB] 145s Get:78 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-iterators all 1.0.14-1build1 [336 kB] 145s Get:79 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-foreach all 1.5.2-1build1 [124 kB] 145s Get:80 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-gam arm64 1.22-5-1 [393 kB] 145s Get:81 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-cli arm64 3.6.4-1 [1374 kB] 145s Get:82 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-glue arm64 1.8.0-1 [163 kB] 145s Get:83 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rlang arm64 1.1.5-3 [1706 kB] 145s Get:84 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 145s Get:85 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-gtable all 0.3.6+dfsg-1 [199 kB] 145s Get:86 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-isoband arm64 0.2.7-1 [1481 kB] 145s Get:87 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-mass arm64 7.3-65-1 [1109 kB] 145s Get:88 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-lattice arm64 0.22-7-1 [1365 kB] 145s Get:89 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-nlme arm64 3.1.168-1 [2310 kB] 146s Get:90 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-matrix arm64 1.7-4-1 [4146 kB] 146s Get:91 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-mgcv arm64 1.9-3-1 [3324 kB] 146s Get:92 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-farver arm64 2.1.2-1 [1344 kB] 146s Get:93 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-labeling all 0.4.3-1 [62.1 kB] 146s Get:94 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-colorspace arm64 2.1-1+dfsg-1 [1563 kB] 146s Get:95 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-munsell all 0.5.1-1 [213 kB] 146s Get:96 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-r6 all 2.6.1-1 [101 kB] 146s Get:97 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 146s Get:98 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-viridislite all 0.4.2-2 [1088 kB] 146s Get:99 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-scales all 1.3.0-1 [603 kB] 146s Get:100 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-fansi arm64 1.0.6-2 [627 kB] 146s Get:101 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 147s Get:102 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 147s Get:103 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 148s Get:104 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-pillar all 1.10.1+dfsg-1 [453 kB] 148s Get:105 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-pkgconfig all 2.0.3-2build2 [20.4 kB] 148s Get:106 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-3 [420 kB] 148s Get:107 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 148s Get:108 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-ggplot2 all 3.5.1+dfsg-1 [3940 kB] 149s Get:109 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-inline all 0.3.21-1 [131 kB] 149s Get:110 http://ftpmaster.internal/ubuntu resolute/universe arm64 seqtk arm64 1.4-2 [34.5 kB] 149s Get:111 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pysam arm64 0.23.3+ds-2 [4348 kB] 151s Get:112 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-littler arm64 0.3.21-2 [83.6 kB] 151s Get:113 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 151s Get:114 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rcpp arm64 1.1.0-1 [2011 kB] 151s Get:115 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rcppgsl arm64 0.3.13-1build1 [198 kB] 151s Get:116 http://ftpmaster.internal/ubuntu resolute/universe arm64 mapdamage all 2.2.2+dfsg-1 [43.3 kB] 151s Get:117 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-runit all 0.4.33.1-1 [250 kB] 152s Preconfiguring packages ... 152s Fetched 150 MB in 38s (3971 kB/s) 152s Selecting previously unselected package libisl23:arm64. 152s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 133841 files and directories currently installed.) 152s Preparing to unpack .../000-libisl23_0.27-1_arm64.deb ... 152s Unpacking libisl23:arm64 (0.27-1) ... 152s Selecting previously unselected package libmpc3:arm64. 152s Preparing to unpack .../001-libmpc3_1.3.1-2_arm64.deb ... 152s Unpacking libmpc3:arm64 (1.3.1-2) ... 152s Selecting previously unselected package cpp-15-aarch64-linux-gnu. 153s Preparing to unpack .../002-cpp-15-aarch64-linux-gnu_15.2.0-9ubuntu1_arm64.deb ... 153s Unpacking cpp-15-aarch64-linux-gnu (15.2.0-9ubuntu1) ... 153s Selecting previously unselected package cpp-15. 153s Preparing to unpack .../003-cpp-15_15.2.0-9ubuntu1_arm64.deb ... 153s Unpacking cpp-15 (15.2.0-9ubuntu1) ... 153s Selecting previously unselected package cpp-aarch64-linux-gnu. 153s Preparing to unpack .../004-cpp-aarch64-linux-gnu_4%3a15.2.0-4ubuntu1_arm64.deb ... 153s Unpacking cpp-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 153s Selecting previously unselected package cpp. 153s Preparing to unpack .../005-cpp_4%3a15.2.0-4ubuntu1_arm64.deb ... 153s Unpacking cpp (4:15.2.0-4ubuntu1) ... 153s Selecting previously unselected package fonts-dejavu-mono. 154s Preparing to unpack .../006-fonts-dejavu-mono_2.37-8_all.deb ... 154s Unpacking fonts-dejavu-mono (2.37-8) ... 154s Selecting previously unselected package fonts-dejavu-core. 154s Preparing to unpack .../007-fonts-dejavu-core_2.37-8_all.deb ... 154s Unpacking fonts-dejavu-core (2.37-8) ... 154s Selecting previously unselected package fontconfig-config. 154s Preparing to unpack .../008-fontconfig-config_2.15.0-2.3ubuntu1_arm64.deb ... 154s Unpacking fontconfig-config (2.15.0-2.3ubuntu1) ... 154s Selecting previously unselected package libfontconfig1:arm64. 155s Preparing to unpack .../009-libfontconfig1_2.15.0-2.3ubuntu1_arm64.deb ... 155s Unpacking libfontconfig1:arm64 (2.15.0-2.3ubuntu1) ... 155s Selecting previously unselected package fontconfig. 155s Preparing to unpack .../010-fontconfig_2.15.0-2.3ubuntu1_arm64.deb ... 155s Unpacking fontconfig (2.15.0-2.3ubuntu1) ... 155s Selecting previously unselected package libcc1-0:arm64. 155s Preparing to unpack .../011-libcc1-0_15.2.0-9ubuntu1_arm64.deb ... 155s Unpacking libcc1-0:arm64 (15.2.0-9ubuntu1) ... 155s Selecting previously unselected package libgomp1:arm64. 155s Preparing to unpack .../012-libgomp1_15.2.0-9ubuntu1_arm64.deb ... 155s Unpacking libgomp1:arm64 (15.2.0-9ubuntu1) ... 155s Selecting previously unselected package libitm1:arm64. 155s Preparing to unpack .../013-libitm1_15.2.0-9ubuntu1_arm64.deb ... 155s Unpacking libitm1:arm64 (15.2.0-9ubuntu1) ... 155s Selecting previously unselected package libasan8:arm64. 155s Preparing to unpack .../014-libasan8_15.2.0-9ubuntu1_arm64.deb ... 155s Unpacking libasan8:arm64 (15.2.0-9ubuntu1) ... 155s Selecting previously unselected package liblsan0:arm64. 155s Preparing to unpack .../015-liblsan0_15.2.0-9ubuntu1_arm64.deb ... 155s Unpacking liblsan0:arm64 (15.2.0-9ubuntu1) ... 156s Selecting previously unselected package libtsan2:arm64. 156s Preparing to unpack .../016-libtsan2_15.2.0-9ubuntu1_arm64.deb ... 156s Unpacking libtsan2:arm64 (15.2.0-9ubuntu1) ... 156s Selecting previously unselected package libubsan1:arm64. 156s Preparing to unpack .../017-libubsan1_15.2.0-9ubuntu1_arm64.deb ... 156s Unpacking libubsan1:arm64 (15.2.0-9ubuntu1) ... 156s Selecting previously unselected package libhwasan0:arm64. 156s Preparing to unpack .../018-libhwasan0_15.2.0-9ubuntu1_arm64.deb ... 156s Unpacking libhwasan0:arm64 (15.2.0-9ubuntu1) ... 156s Selecting previously unselected package libgcc-15-dev:arm64. 156s Preparing to unpack .../019-libgcc-15-dev_15.2.0-9ubuntu1_arm64.deb ... 156s Unpacking libgcc-15-dev:arm64 (15.2.0-9ubuntu1) ... 156s Selecting previously unselected package gcc-15-aarch64-linux-gnu. 156s Preparing to unpack .../020-gcc-15-aarch64-linux-gnu_15.2.0-9ubuntu1_arm64.deb ... 156s Unpacking gcc-15-aarch64-linux-gnu (15.2.0-9ubuntu1) ... 157s Selecting previously unselected package gcc-15. 157s Preparing to unpack .../021-gcc-15_15.2.0-9ubuntu1_arm64.deb ... 157s Unpacking gcc-15 (15.2.0-9ubuntu1) ... 157s Selecting previously unselected package gcc-aarch64-linux-gnu. 157s Preparing to unpack .../022-gcc-aarch64-linux-gnu_4%3a15.2.0-4ubuntu1_arm64.deb ... 157s Unpacking gcc-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 157s Selecting previously unselected package gcc. 157s Preparing to unpack .../023-gcc_4%3a15.2.0-4ubuntu1_arm64.deb ... 157s Unpacking gcc (4:15.2.0-4ubuntu1) ... 157s Selecting previously unselected package libgfortran5:arm64. 157s Preparing to unpack .../024-libgfortran5_15.2.0-9ubuntu1_arm64.deb ... 157s Unpacking libgfortran5:arm64 (15.2.0-9ubuntu1) ... 158s Selecting previously unselected package libgfortran-15-dev:arm64. 158s Preparing to unpack .../025-libgfortran-15-dev_15.2.0-9ubuntu1_arm64.deb ... 158s Unpacking libgfortran-15-dev:arm64 (15.2.0-9ubuntu1) ... 158s Selecting previously unselected package gfortran-15-aarch64-linux-gnu. 158s Preparing to unpack .../026-gfortran-15-aarch64-linux-gnu_15.2.0-9ubuntu1_arm64.deb ... 158s Unpacking gfortran-15-aarch64-linux-gnu (15.2.0-9ubuntu1) ... 158s Selecting previously unselected package gfortran-15. 159s Preparing to unpack .../027-gfortran-15_15.2.0-9ubuntu1_arm64.deb ... 159s Unpacking gfortran-15 (15.2.0-9ubuntu1) ... 159s Selecting previously unselected package gfortran-aarch64-linux-gnu. 159s Preparing to unpack .../028-gfortran-aarch64-linux-gnu_4%3a15.2.0-4ubuntu1_arm64.deb ... 159s Unpacking gfortran-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 159s Selecting previously unselected package gfortran. 159s Preparing to unpack .../029-gfortran_4%3a15.2.0-4ubuntu1_arm64.deb ... 159s Unpacking gfortran (4:15.2.0-4ubuntu1) ... 159s Selecting previously unselected package libblas3:arm64. 159s Preparing to unpack .../030-libblas3_3.12.1-7_arm64.deb ... 159s Unpacking libblas3:arm64 (3.12.1-7) ... 159s Selecting previously unselected package libpixman-1-0:arm64. 159s Preparing to unpack .../031-libpixman-1-0_0.46.4-1_arm64.deb ... 159s Unpacking libpixman-1-0:arm64 (0.46.4-1) ... 159s Selecting previously unselected package libxcb-render0:arm64. 159s Preparing to unpack .../032-libxcb-render0_1.17.0-2build1_arm64.deb ... 159s Unpacking libxcb-render0:arm64 (1.17.0-2build1) ... 159s Selecting previously unselected package libxcb-shm0:arm64. 159s Preparing to unpack .../033-libxcb-shm0_1.17.0-2build1_arm64.deb ... 159s Unpacking libxcb-shm0:arm64 (1.17.0-2build1) ... 159s Selecting previously unselected package libxrender1:arm64. 159s Preparing to unpack .../034-libxrender1_1%3a0.9.12-1_arm64.deb ... 159s Unpacking libxrender1:arm64 (1:0.9.12-1) ... 159s Selecting previously unselected package libcairo2:arm64. 159s Preparing to unpack .../035-libcairo2_1.18.4-1build1_arm64.deb ... 159s Unpacking libcairo2:arm64 (1.18.4-1build1) ... 159s Selecting previously unselected package libdatrie1:arm64. 159s Preparing to unpack .../036-libdatrie1_0.2.14-1_arm64.deb ... 159s Unpacking libdatrie1:arm64 (0.2.14-1) ... 159s Selecting previously unselected package libdeflate0:arm64. 159s Preparing to unpack .../037-libdeflate0_1.23-2_arm64.deb ... 159s Unpacking libdeflate0:arm64 (1.23-2) ... 160s Selecting previously unselected package libgraphite2-3:arm64. 160s Preparing to unpack .../038-libgraphite2-3_1.3.14-2ubuntu1_arm64.deb ... 160s Unpacking libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 160s Selecting previously unselected package libgslcblas0:arm64. 160s Preparing to unpack .../039-libgslcblas0_2.8+dfsg-5.1ubuntu1_arm64.deb ... 160s Unpacking libgslcblas0:arm64 (2.8+dfsg-5.1ubuntu1) ... 160s Selecting previously unselected package libgsl28:arm64. 160s Preparing to unpack .../040-libgsl28_2.8+dfsg-5.1ubuntu1_arm64.deb ... 160s Unpacking libgsl28:arm64 (2.8+dfsg-5.1ubuntu1) ... 161s Selecting previously unselected package libgsl-dev. 161s Preparing to unpack .../041-libgsl-dev_2.8+dfsg-5.1ubuntu1_arm64.deb ... 161s Unpacking libgsl-dev (2.8+dfsg-5.1ubuntu1) ... 161s Selecting previously unselected package libharfbuzz0b:arm64. 161s Preparing to unpack .../042-libharfbuzz0b_12.1.0-1_arm64.deb ... 161s Unpacking libharfbuzz0b:arm64 (12.1.0-1) ... 161s Selecting previously unselected package libhtscodecs2:arm64. 161s Preparing to unpack .../043-libhtscodecs2_1.6.1-2_arm64.deb ... 161s Unpacking libhtscodecs2:arm64 (1.6.1-2) ... 161s Selecting previously unselected package libhts3t64:arm64. 161s Preparing to unpack .../044-libhts3t64_1.22.1+ds2-1_arm64.deb ... 161s Unpacking libhts3t64:arm64 (1.22.1+ds2-1) ... 161s Selecting previously unselected package x11-common. 161s Preparing to unpack .../045-x11-common_1%3a7.7+24ubuntu1_all.deb ... 161s Unpacking x11-common (1:7.7+24ubuntu1) ... 161s Selecting previously unselected package libice6:arm64. 161s Preparing to unpack .../046-libice6_2%3a1.1.1-1_arm64.deb ... 161s Unpacking libice6:arm64 (2:1.1.1-1) ... 161s Selecting previously unselected package libjpeg-turbo8:arm64. 161s Preparing to unpack .../047-libjpeg-turbo8_2.1.5-4ubuntu2_arm64.deb ... 161s Unpacking libjpeg-turbo8:arm64 (2.1.5-4ubuntu2) ... 161s Selecting previously unselected package libjpeg8:arm64. 161s Preparing to unpack .../048-libjpeg8_8c-2ubuntu11_arm64.deb ... 161s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 161s Selecting previously unselected package libopenblas0-pthread:arm64. 161s Preparing to unpack .../049-libopenblas0-pthread_0.3.30+ds-3_arm64.deb ... 161s Unpacking libopenblas0-pthread:arm64 (0.3.30+ds-3) ... 161s Selecting previously unselected package liblapack3:arm64. 161s Preparing to unpack .../050-liblapack3_3.12.1-7_arm64.deb ... 161s Unpacking liblapack3:arm64 (3.12.1-7) ... 162s Selecting previously unselected package liblerc4:arm64. 162s Preparing to unpack .../051-liblerc4_4.0.0+ds-5ubuntu1_arm64.deb ... 162s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 162s Selecting previously unselected package libopenblas0:arm64. 162s Preparing to unpack .../052-libopenblas0_0.3.30+ds-3_arm64.deb ... 162s Unpacking libopenblas0:arm64 (0.3.30+ds-3) ... 162s Selecting previously unselected package libopenblas-pthread-dev:arm64. 162s Preparing to unpack .../053-libopenblas-pthread-dev_0.3.30+ds-3_arm64.deb ... 162s Unpacking libopenblas-pthread-dev:arm64 (0.3.30+ds-3) ... 162s Selecting previously unselected package libopenblas-dev:arm64. 162s Preparing to unpack .../054-libopenblas-dev_0.3.30+ds-3_arm64.deb ... 162s Unpacking libopenblas-dev:arm64 (0.3.30+ds-3) ... 162s Selecting previously unselected package libthai-data. 162s Preparing to unpack .../055-libthai-data_0.1.29-2build2_all.deb ... 162s Unpacking libthai-data (0.1.29-2build2) ... 162s Selecting previously unselected package libthai0:arm64. 162s Preparing to unpack .../056-libthai0_0.1.29-2build2_arm64.deb ... 162s Unpacking libthai0:arm64 (0.1.29-2build2) ... 162s Selecting previously unselected package libpango-1.0-0:arm64. 163s Preparing to unpack .../057-libpango-1.0-0_1.56.3-2_arm64.deb ... 163s Unpacking libpango-1.0-0:arm64 (1.56.3-2) ... 163s Selecting previously unselected package libpangoft2-1.0-0:arm64. 163s Preparing to unpack .../058-libpangoft2-1.0-0_1.56.3-2_arm64.deb ... 163s Unpacking libpangoft2-1.0-0:arm64 (1.56.3-2) ... 163s Selecting previously unselected package libpangocairo-1.0-0:arm64. 163s Preparing to unpack .../059-libpangocairo-1.0-0_1.56.3-2_arm64.deb ... 163s Unpacking libpangocairo-1.0-0:arm64 (1.56.3-2) ... 163s Selecting previously unselected package libpaper2:arm64. 163s Preparing to unpack .../060-libpaper2_2.2.5-0.3_arm64.deb ... 163s Unpacking libpaper2:arm64 (2.2.5-0.3) ... 163s Selecting previously unselected package libpaper-utils. 163s Preparing to unpack .../061-libpaper-utils_2.2.5-0.3_arm64.deb ... 163s Unpacking libpaper-utils (2.2.5-0.3) ... 164s Selecting previously unselected package libsharpyuv0:arm64. 164s Preparing to unpack .../062-libsharpyuv0_1.5.0-0.1_arm64.deb ... 164s Unpacking libsharpyuv0:arm64 (1.5.0-0.1) ... 164s Selecting previously unselected package libsm6:arm64. 164s Preparing to unpack .../063-libsm6_2%3a1.2.6-1_arm64.deb ... 164s Unpacking libsm6:arm64 (2:1.2.6-1) ... 164s Selecting previously unselected package libtcl8.6:arm64. 164s Preparing to unpack .../064-libtcl8.6_8.6.17+dfsg-1_arm64.deb ... 164s Unpacking libtcl8.6:arm64 (8.6.17+dfsg-1) ... 164s Selecting previously unselected package libjbig0:arm64. 164s Preparing to unpack .../065-libjbig0_2.1-6.1ubuntu2_arm64.deb ... 164s Unpacking libjbig0:arm64 (2.1-6.1ubuntu2) ... 164s Selecting previously unselected package libwebp7:arm64. 164s Preparing to unpack .../066-libwebp7_1.5.0-0.1_arm64.deb ... 164s Unpacking libwebp7:arm64 (1.5.0-0.1) ... 164s Selecting previously unselected package libtiff6:arm64. 164s Preparing to unpack .../067-libtiff6_4.7.0-3ubuntu3_arm64.deb ... 164s Unpacking libtiff6:arm64 (4.7.0-3ubuntu3) ... 164s Selecting previously unselected package libxft2:arm64. 164s Preparing to unpack .../068-libxft2_2.3.6-1build1_arm64.deb ... 164s Unpacking libxft2:arm64 (2.3.6-1build1) ... 164s Selecting previously unselected package libxss1:arm64. 164s Preparing to unpack .../069-libxss1_1%3a1.2.3-1build3_arm64.deb ... 164s Unpacking libxss1:arm64 (1:1.2.3-1build3) ... 164s Selecting previously unselected package libtk8.6:arm64. 164s Preparing to unpack .../070-libtk8.6_8.6.17-1_arm64.deb ... 164s Unpacking libtk8.6:arm64 (8.6.17-1) ... 164s Selecting previously unselected package libxt6t64:arm64. 164s Preparing to unpack .../071-libxt6t64_1%3a1.2.1-1.3_arm64.deb ... 164s Unpacking libxt6t64:arm64 (1:1.2.1-1.3) ... 165s Selecting previously unselected package zip. 165s Preparing to unpack .../072-zip_3.0-15ubuntu2_arm64.deb ... 165s Unpacking zip (3.0-15ubuntu2) ... 165s Selecting previously unselected package unzip. 165s Preparing to unpack .../073-unzip_6.0-28ubuntu7_arm64.deb ... 165s Unpacking unzip (6.0-28ubuntu7) ... 165s Selecting previously unselected package xdg-utils. 165s Preparing to unpack .../074-xdg-utils_1.2.1-2ubuntu1_all.deb ... 165s Unpacking xdg-utils (1.2.1-2ubuntu1) ... 165s Selecting previously unselected package r-base-core. 165s Preparing to unpack .../075-r-base-core_4.5.2-1_arm64.deb ... 165s Unpacking r-base-core (4.5.2-1) ... 165s Selecting previously unselected package r-cran-codetools. 165s Preparing to unpack .../076-r-cran-codetools_0.2-20-1_all.deb ... 165s Unpacking r-cran-codetools (0.2-20-1) ... 165s Selecting previously unselected package r-cran-iterators. 165s Preparing to unpack .../077-r-cran-iterators_1.0.14-1build1_all.deb ... 165s Unpacking r-cran-iterators (1.0.14-1build1) ... 166s Selecting previously unselected package r-cran-foreach. 166s Preparing to unpack .../078-r-cran-foreach_1.5.2-1build1_all.deb ... 166s Unpacking r-cran-foreach (1.5.2-1build1) ... 166s Selecting previously unselected package r-cran-gam. 166s Preparing to unpack .../079-r-cran-gam_1.22-5-1_arm64.deb ... 166s Unpacking r-cran-gam (1.22-5-1) ... 166s Selecting previously unselected package r-cran-cli. 166s Preparing to unpack .../080-r-cran-cli_3.6.4-1_arm64.deb ... 166s Unpacking r-cran-cli (3.6.4-1) ... 166s Selecting previously unselected package r-cran-glue. 166s Preparing to unpack .../081-r-cran-glue_1.8.0-1_arm64.deb ... 166s Unpacking r-cran-glue (1.8.0-1) ... 166s Selecting previously unselected package r-cran-rlang. 166s Preparing to unpack .../082-r-cran-rlang_1.1.5-3_arm64.deb ... 166s Unpacking r-cran-rlang (1.1.5-3) ... 166s Selecting previously unselected package r-cran-lifecycle. 166s Preparing to unpack .../083-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 166s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 166s Selecting previously unselected package r-cran-gtable. 166s Preparing to unpack .../084-r-cran-gtable_0.3.6+dfsg-1_all.deb ... 166s Unpacking r-cran-gtable (0.3.6+dfsg-1) ... 166s Selecting previously unselected package r-cran-isoband. 166s Preparing to unpack .../085-r-cran-isoband_0.2.7-1_arm64.deb ... 166s Unpacking r-cran-isoband (0.2.7-1) ... 166s Selecting previously unselected package r-cran-mass. 166s Preparing to unpack .../086-r-cran-mass_7.3-65-1_arm64.deb ... 166s Unpacking r-cran-mass (7.3-65-1) ... 166s Selecting previously unselected package r-cran-lattice. 167s Preparing to unpack .../087-r-cran-lattice_0.22-7-1_arm64.deb ... 167s Unpacking r-cran-lattice (0.22-7-1) ... 167s Selecting previously unselected package r-cran-nlme. 167s Preparing to unpack .../088-r-cran-nlme_3.1.168-1_arm64.deb ... 167s Unpacking r-cran-nlme (3.1.168-1) ... 167s Selecting previously unselected package r-cran-matrix. 167s Preparing to unpack .../089-r-cran-matrix_1.7-4-1_arm64.deb ... 167s Unpacking r-cran-matrix (1.7-4-1) ... 167s Selecting previously unselected package r-cran-mgcv. 167s Preparing to unpack .../090-r-cran-mgcv_1.9-3-1_arm64.deb ... 167s Unpacking r-cran-mgcv (1.9-3-1) ... 167s Selecting previously unselected package r-cran-farver. 167s Preparing to unpack .../091-r-cran-farver_2.1.2-1_arm64.deb ... 167s Unpacking r-cran-farver (2.1.2-1) ... 167s Selecting previously unselected package r-cran-labeling. 167s Preparing to unpack .../092-r-cran-labeling_0.4.3-1_all.deb ... 167s Unpacking r-cran-labeling (0.4.3-1) ... 167s Selecting previously unselected package r-cran-colorspace. 167s Preparing to unpack .../093-r-cran-colorspace_2.1-1+dfsg-1_arm64.deb ... 167s Unpacking r-cran-colorspace (2.1-1+dfsg-1) ... 167s Selecting previously unselected package r-cran-munsell. 167s Preparing to unpack .../094-r-cran-munsell_0.5.1-1_all.deb ... 167s Unpacking r-cran-munsell (0.5.1-1) ... 167s Selecting previously unselected package r-cran-r6. 168s Preparing to unpack .../095-r-cran-r6_2.6.1-1_all.deb ... 168s Unpacking r-cran-r6 (2.6.1-1) ... 168s Selecting previously unselected package r-cran-rcolorbrewer. 168s Preparing to unpack .../096-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 168s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 168s Selecting previously unselected package r-cran-viridislite. 168s Preparing to unpack .../097-r-cran-viridislite_0.4.2-2_all.deb ... 168s Unpacking r-cran-viridislite (0.4.2-2) ... 168s Selecting previously unselected package r-cran-scales. 168s Preparing to unpack .../098-r-cran-scales_1.3.0-1_all.deb ... 168s Unpacking r-cran-scales (1.3.0-1) ... 168s Selecting previously unselected package r-cran-fansi. 168s Preparing to unpack .../099-r-cran-fansi_1.0.6-2_arm64.deb ... 168s Unpacking r-cran-fansi (1.0.6-2) ... 170s Selecting previously unselected package r-cran-magrittr. 170s Preparing to unpack .../100-r-cran-magrittr_2.0.3-1_arm64.deb ... 170s Unpacking r-cran-magrittr (2.0.3-1) ... 170s Selecting previously unselected package r-cran-utf8. 170s Preparing to unpack .../101-r-cran-utf8_1.2.4-1_arm64.deb ... 170s Unpacking r-cran-utf8 (1.2.4-1) ... 170s Selecting previously unselected package r-cran-vctrs. 170s Preparing to unpack .../102-r-cran-vctrs_0.6.5-1_arm64.deb ... 170s Unpacking r-cran-vctrs (0.6.5-1) ... 170s Selecting previously unselected package r-cran-pillar. 170s Preparing to unpack .../103-r-cran-pillar_1.10.1+dfsg-1_all.deb ... 170s Unpacking r-cran-pillar (1.10.1+dfsg-1) ... 170s Selecting previously unselected package r-cran-pkgconfig. 170s Preparing to unpack .../104-r-cran-pkgconfig_2.0.3-2build2_all.deb ... 170s Unpacking r-cran-pkgconfig (2.0.3-2build2) ... 170s Selecting previously unselected package r-cran-tibble. 170s Preparing to unpack .../105-r-cran-tibble_3.2.1+dfsg-3_arm64.deb ... 170s Unpacking r-cran-tibble (3.2.1+dfsg-3) ... 170s Selecting previously unselected package r-cran-withr. 170s Preparing to unpack .../106-r-cran-withr_3.0.2+dfsg-1_all.deb ... 170s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 170s Selecting previously unselected package r-cran-ggplot2. 170s Preparing to unpack .../107-r-cran-ggplot2_3.5.1+dfsg-1_all.deb ... 170s Unpacking r-cran-ggplot2 (3.5.1+dfsg-1) ... 170s Selecting previously unselected package r-cran-inline. 170s Preparing to unpack .../108-r-cran-inline_0.3.21-1_all.deb ... 170s Unpacking r-cran-inline (0.3.21-1) ... 170s Selecting previously unselected package seqtk. 170s Preparing to unpack .../109-seqtk_1.4-2_arm64.deb ... 170s Unpacking seqtk (1.4-2) ... 170s Selecting previously unselected package python3-pysam. 170s Preparing to unpack .../110-python3-pysam_0.23.3+ds-2_arm64.deb ... 170s Unpacking python3-pysam (0.23.3+ds-2) ... 170s Selecting previously unselected package r-cran-littler. 170s Preparing to unpack .../111-r-cran-littler_0.3.21-2_arm64.deb ... 170s Unpacking r-cran-littler (0.3.21-2) ... 170s Selecting previously unselected package r-cran-pkgkitten. 170s Preparing to unpack .../112-r-cran-pkgkitten_0.2.4-1_all.deb ... 170s Unpacking r-cran-pkgkitten (0.2.4-1) ... 170s Selecting previously unselected package r-cran-rcpp. 170s Preparing to unpack .../113-r-cran-rcpp_1.1.0-1_arm64.deb ... 170s Unpacking r-cran-rcpp (1.1.0-1) ... 170s Selecting previously unselected package r-cran-rcppgsl. 170s Preparing to unpack .../114-r-cran-rcppgsl_0.3.13-1build1_arm64.deb ... 170s Unpacking r-cran-rcppgsl (0.3.13-1build1) ... 170s Selecting previously unselected package mapdamage. 170s Preparing to unpack .../115-mapdamage_2.2.2+dfsg-1_all.deb ... 170s Unpacking mapdamage (2.2.2+dfsg-1) ... 170s Selecting previously unselected package r-cran-runit. 170s Preparing to unpack .../116-r-cran-runit_0.4.33.1-1_all.deb ... 170s Unpacking r-cran-runit (0.4.33.1-1) ... 170s Setting up libhtscodecs2:arm64 (1.6.1-2) ... 170s Setting up libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 170s Setting up libpixman-1-0:arm64 (0.46.4-1) ... 170s Setting up libsharpyuv0:arm64 (1.5.0-0.1) ... 170s Setting up liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 170s Setting up seqtk (1.4-2) ... 170s Setting up libxrender1:arm64 (1:0.9.12-1) ... 170s Setting up libdatrie1:arm64 (0.2.14-1) ... 170s Setting up libgslcblas0:arm64 (2.8+dfsg-5.1ubuntu1) ... 170s Setting up libxcb-render0:arm64 (1.17.0-2build1) ... 170s Setting up unzip (6.0-28ubuntu7) ... 171s Setting up x11-common (1:7.7+24ubuntu1) ... 171s Setting up libdeflate0:arm64 (1.23-2) ... 171s Setting up libxcb-shm0:arm64 (1.17.0-2build1) ... 171s Setting up libgomp1:arm64 (15.2.0-9ubuntu1) ... 171s Setting up libjbig0:arm64 (2.1-6.1ubuntu2) ... 171s Setting up zip (3.0-15ubuntu2) ... 171s Setting up libblas3:arm64 (3.12.1-7) ... 171s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 171s Setting up fonts-dejavu-mono (2.37-8) ... 171s Setting up libmpc3:arm64 (1.3.1-2) ... 171s Setting up libtcl8.6:arm64 (8.6.17+dfsg-1) ... 171s Setting up fonts-dejavu-core (2.37-8) ... 171s Setting up libjpeg-turbo8:arm64 (2.1.5-4ubuntu2) ... 171s Setting up libgfortran5:arm64 (15.2.0-9ubuntu1) ... 171s Setting up libwebp7:arm64 (1.5.0-0.1) ... 171s Setting up libubsan1:arm64 (15.2.0-9ubuntu1) ... 171s Setting up libhwasan0:arm64 (15.2.0-9ubuntu1) ... 171s Setting up libasan8:arm64 (15.2.0-9ubuntu1) ... 171s Setting up libhts3t64:arm64 (1.22.1+ds2-1) ... 171s Setting up libharfbuzz0b:arm64 (12.1.0-1) ... 171s Setting up libthai-data (0.1.29-2build2) ... 171s Setting up libxss1:arm64 (1:1.2.3-1build3) ... 171s Setting up libpaper2:arm64 (2.2.5-0.3) ... 171s Setting up libtsan2:arm64 (15.2.0-9ubuntu1) ... 171s Setting up libisl23:arm64 (0.27-1) ... 171s Setting up libgsl28:arm64 (2.8+dfsg-5.1ubuntu1) ... 171s Setting up xdg-utils (1.2.1-2ubuntu1) ... 171s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 171s Setting up libcc1-0:arm64 (15.2.0-9ubuntu1) ... 171s Setting up liblsan0:arm64 (15.2.0-9ubuntu1) ... 171s Setting up libitm1:arm64 (15.2.0-9ubuntu1) ... 171s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 171s Setting up cpp-15-aarch64-linux-gnu (15.2.0-9ubuntu1) ... 171s Setting up libice6:arm64 (2:1.1.1-1) ... 171s Setting up liblapack3:arm64 (3.12.1-7) ... 171s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 171s Setting up libgsl-dev (2.8+dfsg-5.1ubuntu1) ... 171s Setting up libopenblas0-pthread:arm64 (0.3.30+ds-3) ... 171s update-alternatives: using /usr/lib/aarch64-linux-gnu/openblas-pthread/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 171s update-alternatives: using /usr/lib/aarch64-linux-gnu/openblas-pthread/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 171s update-alternatives: using /usr/lib/aarch64-linux-gnu/openblas-pthread/libopenblas.so.0 to provide /usr/lib/aarch64-linux-gnu/libopenblas.so.0 (libopenblas.so.0-aarch64-linux-gnu) in auto mode 171s Setting up python3-pysam (0.23.3+ds-2) ... 172s Setting up libgcc-15-dev:arm64 (15.2.0-9ubuntu1) ... 172s Setting up fontconfig-config (2.15.0-2.3ubuntu1) ... 172s Setting up libpaper-utils (2.2.5-0.3) ... 172s Setting up libgfortran-15-dev:arm64 (15.2.0-9ubuntu1) ... 172s Setting up libthai0:arm64 (0.1.29-2build2) ... 172s Setting up cpp-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 172s Setting up libopenblas0:arm64 (0.3.30+ds-3) ... 172s Setting up cpp-15 (15.2.0-9ubuntu1) ... 172s Setting up libtiff6:arm64 (4.7.0-3ubuntu3) ... 172s Setting up cpp (4:15.2.0-4ubuntu1) ... 172s Setting up libfontconfig1:arm64 (2.15.0-2.3ubuntu1) ... 172s Setting up libsm6:arm64 (2:1.2.6-1) ... 172s Setting up libopenblas-pthread-dev:arm64 (0.3.30+ds-3) ... 172s update-alternatives: using /usr/lib/aarch64-linux-gnu/openblas-pthread/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode 172s update-alternatives: using /usr/lib/aarch64-linux-gnu/openblas-pthread/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode 172s update-alternatives: using /usr/lib/aarch64-linux-gnu/openblas-pthread/libopenblas.so to provide /usr/lib/aarch64-linux-gnu/libopenblas.so (libopenblas.so-aarch64-linux-gnu) in auto mode 172s Setting up fontconfig (2.15.0-2.3ubuntu1) ... 174s Regenerating fonts cache... done. 174s Setting up libxft2:arm64 (2.3.6-1build1) ... 174s Setting up gcc-15-aarch64-linux-gnu (15.2.0-9ubuntu1) ... 174s Setting up libtk8.6:arm64 (8.6.17-1) ... 174s Setting up libpango-1.0-0:arm64 (1.56.3-2) ... 174s Setting up libcairo2:arm64 (1.18.4-1build1) ... 174s Setting up gcc-15 (15.2.0-9ubuntu1) ... 174s Setting up libopenblas-dev:arm64 (0.3.30+ds-3) ... 174s Setting up gfortran-15-aarch64-linux-gnu (15.2.0-9ubuntu1) ... 174s Setting up libxt6t64:arm64 (1:1.2.1-1.3) ... 174s Setting up libpangoft2-1.0-0:arm64 (1.56.3-2) ... 174s Setting up gfortran-15 (15.2.0-9ubuntu1) ... 174s Setting up libpangocairo-1.0-0:arm64 (1.56.3-2) ... 174s Setting up gcc-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 174s Setting up gcc (4:15.2.0-4ubuntu1) ... 174s Setting up r-base-core (4.5.2-1) ... 175s Creating config file /etc/R/Renviron with new version 175s Setting up r-cran-labeling (0.4.3-1) ... 175s Setting up r-cran-lattice (0.22-7-1) ... 175s Setting up r-cran-nlme (3.1.168-1) ... 175s Setting up r-cran-farver (2.1.2-1) ... 175s Setting up r-cran-viridislite (0.4.2-2) ... 175s Setting up gfortran-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 175s Setting up r-cran-r6 (2.6.1-1) ... 175s Setting up r-cran-pkgkitten (0.2.4-1) ... 175s Setting up r-cran-magrittr (2.0.3-1) ... 175s Setting up r-cran-littler (0.3.21-2) ... 175s Setting up r-cran-rcpp (1.1.0-1) ... 175s Setting up r-cran-codetools (0.2-20-1) ... 175s Setting up r-cran-inline (0.3.21-1) ... 175s Setting up r-cran-rlang (1.1.5-3) ... 175s Setting up r-cran-withr (3.0.2+dfsg-1) ... 175s Setting up r-cran-iterators (1.0.14-1build1) ... 175s Setting up r-cran-foreach (1.5.2-1build1) ... 175s Setting up r-cran-fansi (1.0.6-2) ... 175s Setting up r-cran-mass (7.3-65-1) ... 175s Setting up r-cran-glue (1.8.0-1) ... 175s Setting up r-cran-gam (1.22-5-1) ... 175s Setting up r-cran-cli (3.6.4-1) ... 175s Setting up gfortran (4:15.2.0-4ubuntu1) ... 175s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 175s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 175s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 175s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 175s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 175s Setting up r-cran-pkgconfig (2.0.3-2build2) ... 175s Setting up r-cran-utf8 (1.2.4-1) ... 175s Setting up r-cran-colorspace (2.1-1+dfsg-1) ... 175s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ... 175s Setting up r-cran-isoband (0.2.7-1) ... 175s Setting up r-cran-runit (0.4.33.1-1) ... 175s Setting up r-cran-gtable (0.3.6+dfsg-1) ... 175s Setting up r-cran-matrix (1.7-4-1) ... 175s Setting up r-cran-mgcv (1.9-3-1) ... 175s Setting up r-cran-rcppgsl (0.3.13-1build1) ... 175s Setting up r-cran-vctrs (0.6.5-1) ... 175s Setting up r-cran-pillar (1.10.1+dfsg-1) ... 175s Setting up r-cran-munsell (0.5.1-1) ... 175s Setting up r-cran-tibble (3.2.1+dfsg-3) ... 175s Setting up r-cran-scales (1.3.0-1) ... 175s Setting up r-cran-ggplot2 (3.5.1+dfsg-1) ... 175s Setting up mapdamage (2.2.2+dfsg-1) ... 175s Processing triggers for install-info (7.2-5) ... 176s Processing triggers for libc-bin (2.42-2ubuntu2) ... 176s Processing triggers for man-db (2.13.1-1) ... 179s autopkgtest [09:38:15]: test run-unit-test: [----------------------- 183s Started with the command: /usr/bin/mapDamage -i tests/test.bam -r tests/fake1.fasta -d tests/results --no-stats 184s additional tests/results/Length_plot.pdf generated 184s Successful run 184s Reading from 'tests/test.bam' 184s Writing results to 'tests/results/' 184s pdf tests/results/Fragmisincorporation_plot.pdf generated 184s .. 184s ---------------------------------------------------------------------- 184s Ran 2 tests in 4.020s 184s 184s OK 184s autopkgtest [09:38:20]: test run-unit-test: -----------------------] 185s autopkgtest [09:38:21]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 185s run-unit-test PASS 185s autopkgtest [09:38:21]: test run-r-packages-check: preparing testbed 208s Creating nova instance adt-resolute-arm64-mapdamage-20251203-093516-juju-7f2275-prod-proposed-migration-environment-2-1adb51a1-329c-4123-8d89-98c4c72a22ac from image adt/ubuntu-resolute-arm64-server-20251203.img (UUID cfeb7bb3-622b-4d7d-a373-c5ae54145875)... 279s autopkgtest [09:39:55]: testbed dpkg architecture: arm64 279s autopkgtest [09:39:55]: testbed apt version: 3.1.12 280s autopkgtest [09:39:56]: @@@@@@@@@@@@@@@@@@@@ test bed setup 280s autopkgtest [09:39:56]: testbed release detected to be: resolute 282s autopkgtest [09:39:58]: updating testbed package index (apt update) 283s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 284s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 284s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 284s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 284s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [25.2 kB] 284s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [981 kB] 284s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [147 kB] 284s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 Packages [194 kB] 284s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 c-n-f Metadata [6096 B] 284s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 c-n-f Metadata [120 B] 284s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 Packages [712 kB] 284s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 c-n-f Metadata [19.4 kB] 284s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 Packages [10.7 kB] 284s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 c-n-f Metadata [724 B] 286s Fetched 2220 kB in 2s (931 kB/s) 286s Reading package lists... 290s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 290s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 290s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 290s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 291s Reading package lists... 291s Reading package lists... 292s Building dependency tree... 292s Reading state information... 292s Calculating upgrade... 292s The following packages will be upgraded: 292s libpython3-stdlib python3 python3-gdbm python3-minimal 297s 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 297s Need to get 72.9 kB of archives. 297s After this operation, 2048 B of additional disk space will be used. 297s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 python3-minimal arm64 3.13.9-2 [28.1 kB] 298s Get:2 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 python3 arm64 3.13.9-2 [23.0 kB] 298s Get:3 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 libpython3-stdlib arm64 3.13.9-2 [10.8 kB] 298s Get:4 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 python3-gdbm arm64 3.13.9-2 [11.0 kB] 298s dpkg-preconfigure: unable to re-open stdin: No such file or directory 298s Fetched 72.9 kB in 6s (12.8 kB/s) 299s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 133841 files and directories currently installed.) 299s Preparing to unpack .../python3-minimal_3.13.9-2_arm64.deb ... 299s Unpacking python3-minimal (3.13.9-2) over (3.13.7-1) ... 299s Setting up python3-minimal (3.13.9-2) ... 299s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 133841 files and directories currently installed.) 299s Preparing to unpack .../python3_3.13.9-2_arm64.deb ... 299s running python pre-rtupdate hooks for python3.13... 299s Unpacking python3 (3.13.9-2) over (3.13.7-1) ... 299s Preparing to unpack .../libpython3-stdlib_3.13.9-2_arm64.deb ... 299s Unpacking libpython3-stdlib:arm64 (3.13.9-2) over (3.13.7-1) ... 299s Preparing to unpack .../python3-gdbm_3.13.9-2_arm64.deb ... 299s Unpacking python3-gdbm (3.13.9-2) over (3.13.9-1) ... 299s Setting up python3-gdbm (3.13.9-2) ... 299s Setting up libpython3-stdlib:arm64 (3.13.9-2) ... 299s Setting up python3 (3.13.9-2) ... 299s running python rtupdate hooks for python3.13... 299s running python post-rtupdate hooks for python3.13... 299s Processing triggers for man-db (2.13.1-1) ... 300s autopkgtest [09:40:16]: upgrading testbed (apt dist-upgrade and autopurge) 301s Reading package lists... 301s Building dependency tree... 301s Reading state information... 301s Calculating upgrade... 301s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 302s Reading package lists... 302s Building dependency tree... 302s Reading state information... 303s Solving dependencies... 303s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 307s Reading package lists... 307s Building dependency tree... 307s Reading state information... 307s Solving dependencies... 308s The following NEW packages will be installed: 308s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono libblas3 308s libcairo2 libdatrie1 libdeflate0 libfontconfig1 libgfortran5 libgomp1 308s libgraphite2-3 libgsl-dev libgsl28 libgslcblas0 libharfbuzz0b libhts3t64 308s libhtscodecs2 libice6 libjbig0 libjpeg-turbo8 libjpeg8 liblapack3 liblerc4 308s libopenblas-dev libopenblas-pthread-dev libopenblas0 libopenblas0-pthread 308s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 308s libpaper2 libpixman-1-0 libsharpyuv0 libsm6 libtcl8.6 libthai-data libthai0 308s libtiff6 libtk8.6 libwebp7 libxcb-render0 libxcb-shm0 libxft2 libxrender1 308s libxss1 libxt6t64 mapdamage python3-pysam r-base-core r-cran-cli 308s r-cran-codetools r-cran-colorspace r-cran-fansi r-cran-farver r-cran-foreach 308s r-cran-gam r-cran-ggplot2 r-cran-glue r-cran-gtable r-cran-inline 308s r-cran-isoband r-cran-iterators r-cran-labeling r-cran-lattice 308s r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix 308s r-cran-mgcv r-cran-munsell r-cran-nlme r-cran-pillar r-cran-pkgconfig 308s r-cran-pkgkitten r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppgsl 308s r-cran-rlang r-cran-scales r-cran-tibble r-cran-utf8 r-cran-vctrs 308s r-cran-viridislite r-cran-withr seqtk unzip x11-common xdg-utils zip 309s 0 upgraded, 93 newly installed, 0 to remove and 0 not upgraded. 309s Need to get 87.8 MB of archives. 309s After this operation, 257 MB of additional disk space will be used. 309s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 310s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 311s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 fontconfig-config arm64 2.15.0-2.3ubuntu1 [38.1 kB] 311s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 libfontconfig1 arm64 2.15.0-2.3ubuntu1 [144 kB] 311s Get:5 http://ftpmaster.internal/ubuntu resolute/main arm64 fontconfig arm64 2.15.0-2.3ubuntu1 [191 kB] 311s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 libblas3 arm64 3.12.1-7 [181 kB] 311s Get:7 http://ftpmaster.internal/ubuntu resolute/main arm64 libpixman-1-0 arm64 0.46.4-1 [204 kB] 312s Get:8 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-render0 arm64 1.17.0-2build1 [18.1 kB] 312s Get:9 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-shm0 arm64 1.17.0-2build1 [6234 B] 312s Get:10 http://ftpmaster.internal/ubuntu resolute/main arm64 libxrender1 arm64 1:0.9.12-1 [19.5 kB] 312s Get:11 http://ftpmaster.internal/ubuntu resolute/main arm64 libcairo2 arm64 1.18.4-1build1 [592 kB] 313s Get:12 http://ftpmaster.internal/ubuntu resolute/main arm64 libdatrie1 arm64 0.2.14-1 [19.6 kB] 313s Get:13 http://ftpmaster.internal/ubuntu resolute/main arm64 libdeflate0 arm64 1.23-2 [46.4 kB] 313s Get:14 http://ftpmaster.internal/ubuntu resolute/main arm64 libgfortran5 arm64 15.2.0-9ubuntu1 [450 kB] 314s Get:15 http://ftpmaster.internal/ubuntu resolute/main arm64 libgomp1 arm64 15.2.0-9ubuntu1 [147 kB] 314s Get:16 http://ftpmaster.internal/ubuntu resolute/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB] 314s Get:17 http://ftpmaster.internal/ubuntu resolute/universe arm64 libgslcblas0 arm64 2.8+dfsg-5.1ubuntu1 [96.3 kB] 314s Get:18 http://ftpmaster.internal/ubuntu resolute/universe arm64 libgsl28 arm64 2.8+dfsg-5.1ubuntu1 [1029 kB] 315s Get:19 http://ftpmaster.internal/ubuntu resolute/universe arm64 libgsl-dev arm64 2.8+dfsg-5.1ubuntu1 [1350 kB] 316s Get:20 http://ftpmaster.internal/ubuntu resolute/main arm64 libharfbuzz0b arm64 12.1.0-1 [523 kB] 316s Get:21 http://ftpmaster.internal/ubuntu resolute/universe arm64 libhtscodecs2 arm64 1.6.1-2 [82.7 kB] 317s Get:22 http://ftpmaster.internal/ubuntu resolute/universe arm64 libhts3t64 arm64 1.22.1+ds2-1 [442 kB] 317s Get:23 http://ftpmaster.internal/ubuntu resolute/main arm64 x11-common all 1:7.7+24ubuntu1 [22.4 kB] 317s Get:24 http://ftpmaster.internal/ubuntu resolute/main arm64 libice6 arm64 2:1.1.1-1 [42.3 kB] 317s Get:25 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg-turbo8 arm64 2.1.5-4ubuntu2 [165 kB] 317s Get:26 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 317s Get:27 http://ftpmaster.internal/ubuntu resolute/universe arm64 libopenblas0-pthread arm64 0.3.30+ds-3 [4307 kB] 320s Get:28 http://ftpmaster.internal/ubuntu resolute/main arm64 liblapack3 arm64 3.12.1-7 [2300 kB] 321s Get:29 http://ftpmaster.internal/ubuntu resolute/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB] 321s Get:30 http://ftpmaster.internal/ubuntu resolute/universe arm64 libopenblas0 arm64 0.3.30+ds-3 [6306 B] 321s Get:31 http://ftpmaster.internal/ubuntu resolute/universe arm64 libopenblas-pthread-dev arm64 0.3.30+ds-3 [4259 kB] 322s Get:32 http://ftpmaster.internal/ubuntu resolute/universe arm64 libopenblas-dev arm64 0.3.30+ds-3 [21.3 kB] 322s Get:33 http://ftpmaster.internal/ubuntu resolute/main arm64 libthai-data all 0.1.29-2build2 [153 kB] 322s Get:34 http://ftpmaster.internal/ubuntu resolute/main arm64 libthai0 arm64 0.1.29-2build2 [18.4 kB] 322s Get:35 http://ftpmaster.internal/ubuntu resolute/main arm64 libpango-1.0-0 arm64 1.56.3-2 [237 kB] 323s Get:36 http://ftpmaster.internal/ubuntu resolute/main arm64 libpangoft2-1.0-0 arm64 1.56.3-2 [50.2 kB] 323s Get:37 http://ftpmaster.internal/ubuntu resolute/main arm64 libpangocairo-1.0-0 arm64 1.56.3-2 [27.7 kB] 323s Get:38 http://ftpmaster.internal/ubuntu resolute/main arm64 libpaper2 arm64 2.2.5-0.3 [17.3 kB] 323s Get:39 http://ftpmaster.internal/ubuntu resolute/main arm64 libpaper-utils arm64 2.2.5-0.3 [15.4 kB] 323s Get:40 http://ftpmaster.internal/ubuntu resolute/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB] 323s Get:41 http://ftpmaster.internal/ubuntu resolute/main arm64 libsm6 arm64 2:1.2.6-1 [16.6 kB] 323s Get:42 http://ftpmaster.internal/ubuntu resolute/main arm64 libtcl8.6 arm64 8.6.17+dfsg-1 [1024 kB] 323s Get:43 http://ftpmaster.internal/ubuntu resolute/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB] 323s Get:44 http://ftpmaster.internal/ubuntu resolute/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB] 323s Get:45 http://ftpmaster.internal/ubuntu resolute/main arm64 libtiff6 arm64 4.7.0-3ubuntu3 [196 kB] 323s Get:46 http://ftpmaster.internal/ubuntu resolute/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB] 323s Get:47 http://ftpmaster.internal/ubuntu resolute/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B] 323s Get:48 http://ftpmaster.internal/ubuntu resolute/main arm64 libtk8.6 arm64 8.6.17-1 [811 kB] 323s Get:49 http://ftpmaster.internal/ubuntu resolute/main arm64 libxt6t64 arm64 1:1.2.1-1.3 [168 kB] 323s Get:50 http://ftpmaster.internal/ubuntu resolute/main arm64 zip arm64 3.0-15ubuntu2 [175 kB] 323s Get:51 http://ftpmaster.internal/ubuntu resolute/main arm64 unzip arm64 6.0-28ubuntu7 [176 kB] 323s Get:52 http://ftpmaster.internal/ubuntu resolute/main arm64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 323s Get:53 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-base-core arm64 4.5.2-1 [28.6 MB] 327s Get:54 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-codetools all 0.2-20-1 [90.5 kB] 327s Get:55 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-iterators all 1.0.14-1build1 [336 kB] 327s Get:56 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-foreach all 1.5.2-1build1 [124 kB] 327s Get:57 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-gam arm64 1.22-5-1 [393 kB] 327s Get:58 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-cli arm64 3.6.4-1 [1374 kB] 327s Get:59 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-glue arm64 1.8.0-1 [163 kB] 327s Get:60 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rlang arm64 1.1.5-3 [1706 kB] 327s Get:61 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 327s Get:62 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-gtable all 0.3.6+dfsg-1 [199 kB] 327s Get:63 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-isoband arm64 0.2.7-1 [1481 kB] 327s Get:64 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-mass arm64 7.3-65-1 [1109 kB] 327s Get:65 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-lattice arm64 0.22-7-1 [1365 kB] 328s Get:66 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-nlme arm64 3.1.168-1 [2310 kB] 328s Get:67 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-matrix arm64 1.7-4-1 [4146 kB] 329s Get:68 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-mgcv arm64 1.9-3-1 [3324 kB] 329s Get:69 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-farver arm64 2.1.2-1 [1344 kB] 329s Get:70 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-labeling all 0.4.3-1 [62.1 kB] 329s Get:71 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-colorspace arm64 2.1-1+dfsg-1 [1563 kB] 329s Get:72 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-munsell all 0.5.1-1 [213 kB] 329s Get:73 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-r6 all 2.6.1-1 [101 kB] 329s Get:74 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 329s Get:75 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-viridislite all 0.4.2-2 [1088 kB] 330s Get:76 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-scales all 1.3.0-1 [603 kB] 330s Get:77 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-fansi arm64 1.0.6-2 [627 kB] 330s Get:78 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 330s Get:79 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 330s Get:80 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 330s Get:81 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-pillar all 1.10.1+dfsg-1 [453 kB] 330s Get:82 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-pkgconfig all 2.0.3-2build2 [20.4 kB] 330s Get:83 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-3 [420 kB] 330s Get:84 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 330s Get:85 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-ggplot2 all 3.5.1+dfsg-1 [3940 kB] 330s Get:86 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-inline all 0.3.21-1 [131 kB] 330s Get:87 http://ftpmaster.internal/ubuntu resolute/universe arm64 seqtk arm64 1.4-2 [34.5 kB] 330s Get:88 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pysam arm64 0.23.3+ds-2 [4348 kB] 331s Get:89 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-littler arm64 0.3.21-2 [83.6 kB] 331s Get:90 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 331s Get:91 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rcpp arm64 1.1.0-1 [2011 kB] 331s Get:92 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rcppgsl arm64 0.3.13-1build1 [198 kB] 331s Get:93 http://ftpmaster.internal/ubuntu resolute/universe arm64 mapdamage all 2.2.2+dfsg-1 [43.3 kB] 331s Preconfiguring packages ... 331s Fetched 87.8 MB in 23s (3812 kB/s) 331s Selecting previously unselected package fonts-dejavu-mono. 331s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 133841 files and directories currently installed.) 331s Preparing to unpack .../00-fonts-dejavu-mono_2.37-8_all.deb ... 331s Unpacking fonts-dejavu-mono (2.37-8) ... 331s Selecting previously unselected package fonts-dejavu-core. 331s Preparing to unpack .../01-fonts-dejavu-core_2.37-8_all.deb ... 331s Unpacking fonts-dejavu-core (2.37-8) ... 331s Selecting previously unselected package fontconfig-config. 331s Preparing to unpack .../02-fontconfig-config_2.15.0-2.3ubuntu1_arm64.deb ... 332s Unpacking fontconfig-config (2.15.0-2.3ubuntu1) ... 332s Selecting previously unselected package libfontconfig1:arm64. 332s Preparing to unpack .../03-libfontconfig1_2.15.0-2.3ubuntu1_arm64.deb ... 332s Unpacking libfontconfig1:arm64 (2.15.0-2.3ubuntu1) ... 332s Selecting previously unselected package fontconfig. 332s Preparing to unpack .../04-fontconfig_2.15.0-2.3ubuntu1_arm64.deb ... 332s Unpacking fontconfig (2.15.0-2.3ubuntu1) ... 332s Selecting previously unselected package libblas3:arm64. 332s Preparing to unpack .../05-libblas3_3.12.1-7_arm64.deb ... 332s Unpacking libblas3:arm64 (3.12.1-7) ... 332s Selecting previously unselected package libpixman-1-0:arm64. 332s Preparing to unpack .../06-libpixman-1-0_0.46.4-1_arm64.deb ... 332s Unpacking libpixman-1-0:arm64 (0.46.4-1) ... 332s Selecting previously unselected package libxcb-render0:arm64. 332s Preparing to unpack .../07-libxcb-render0_1.17.0-2build1_arm64.deb ... 332s Unpacking libxcb-render0:arm64 (1.17.0-2build1) ... 332s Selecting previously unselected package libxcb-shm0:arm64. 332s Preparing to unpack .../08-libxcb-shm0_1.17.0-2build1_arm64.deb ... 332s Unpacking libxcb-shm0:arm64 (1.17.0-2build1) ... 332s Selecting previously unselected package libxrender1:arm64. 332s Preparing to unpack .../09-libxrender1_1%3a0.9.12-1_arm64.deb ... 332s Unpacking libxrender1:arm64 (1:0.9.12-1) ... 332s Selecting previously unselected package libcairo2:arm64. 332s Preparing to unpack .../10-libcairo2_1.18.4-1build1_arm64.deb ... 332s Unpacking libcairo2:arm64 (1.18.4-1build1) ... 332s Selecting previously unselected package libdatrie1:arm64. 332s Preparing to unpack .../11-libdatrie1_0.2.14-1_arm64.deb ... 332s Unpacking libdatrie1:arm64 (0.2.14-1) ... 332s Selecting previously unselected package libdeflate0:arm64. 332s Preparing to unpack .../12-libdeflate0_1.23-2_arm64.deb ... 332s Unpacking libdeflate0:arm64 (1.23-2) ... 332s Selecting previously unselected package libgfortran5:arm64. 332s Preparing to unpack .../13-libgfortran5_15.2.0-9ubuntu1_arm64.deb ... 332s Unpacking libgfortran5:arm64 (15.2.0-9ubuntu1) ... 332s Selecting previously unselected package libgomp1:arm64. 332s Preparing to unpack .../14-libgomp1_15.2.0-9ubuntu1_arm64.deb ... 332s Unpacking libgomp1:arm64 (15.2.0-9ubuntu1) ... 332s Selecting previously unselected package libgraphite2-3:arm64. 332s Preparing to unpack .../15-libgraphite2-3_1.3.14-2ubuntu1_arm64.deb ... 332s Unpacking libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 332s Selecting previously unselected package libgslcblas0:arm64. 332s Preparing to unpack .../16-libgslcblas0_2.8+dfsg-5.1ubuntu1_arm64.deb ... 332s Unpacking libgslcblas0:arm64 (2.8+dfsg-5.1ubuntu1) ... 333s Selecting previously unselected package libgsl28:arm64. 333s Preparing to unpack .../17-libgsl28_2.8+dfsg-5.1ubuntu1_arm64.deb ... 333s Unpacking libgsl28:arm64 (2.8+dfsg-5.1ubuntu1) ... 333s Selecting previously unselected package libgsl-dev. 333s Preparing to unpack .../18-libgsl-dev_2.8+dfsg-5.1ubuntu1_arm64.deb ... 333s Unpacking libgsl-dev (2.8+dfsg-5.1ubuntu1) ... 333s Selecting previously unselected package libharfbuzz0b:arm64. 333s Preparing to unpack .../19-libharfbuzz0b_12.1.0-1_arm64.deb ... 333s Unpacking libharfbuzz0b:arm64 (12.1.0-1) ... 333s Selecting previously unselected package libhtscodecs2:arm64. 333s Preparing to unpack .../20-libhtscodecs2_1.6.1-2_arm64.deb ... 333s Unpacking libhtscodecs2:arm64 (1.6.1-2) ... 333s Selecting previously unselected package libhts3t64:arm64. 333s Preparing to unpack .../21-libhts3t64_1.22.1+ds2-1_arm64.deb ... 333s Unpacking libhts3t64:arm64 (1.22.1+ds2-1) ... 333s Selecting previously unselected package x11-common. 333s Preparing to unpack .../22-x11-common_1%3a7.7+24ubuntu1_all.deb ... 333s Unpacking x11-common (1:7.7+24ubuntu1) ... 333s Selecting previously unselected package libice6:arm64. 333s Preparing to unpack .../23-libice6_2%3a1.1.1-1_arm64.deb ... 333s Unpacking libice6:arm64 (2:1.1.1-1) ... 333s Selecting previously unselected package libjpeg-turbo8:arm64. 333s Preparing to unpack .../24-libjpeg-turbo8_2.1.5-4ubuntu2_arm64.deb ... 333s Unpacking libjpeg-turbo8:arm64 (2.1.5-4ubuntu2) ... 333s Selecting previously unselected package libjpeg8:arm64. 333s Preparing to unpack .../25-libjpeg8_8c-2ubuntu11_arm64.deb ... 333s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 333s Selecting previously unselected package libopenblas0-pthread:arm64. 333s Preparing to unpack .../26-libopenblas0-pthread_0.3.30+ds-3_arm64.deb ... 333s Unpacking libopenblas0-pthread:arm64 (0.3.30+ds-3) ... 333s Selecting previously unselected package liblapack3:arm64. 333s Preparing to unpack .../27-liblapack3_3.12.1-7_arm64.deb ... 333s Unpacking liblapack3:arm64 (3.12.1-7) ... 333s Selecting previously unselected package liblerc4:arm64. 333s Preparing to unpack .../28-liblerc4_4.0.0+ds-5ubuntu1_arm64.deb ... 333s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 333s Selecting previously unselected package libopenblas0:arm64. 333s Preparing to unpack .../29-libopenblas0_0.3.30+ds-3_arm64.deb ... 333s Unpacking libopenblas0:arm64 (0.3.30+ds-3) ... 333s Selecting previously unselected package libopenblas-pthread-dev:arm64. 333s Preparing to unpack .../30-libopenblas-pthread-dev_0.3.30+ds-3_arm64.deb ... 333s Unpacking libopenblas-pthread-dev:arm64 (0.3.30+ds-3) ... 334s Selecting previously unselected package libopenblas-dev:arm64. 334s Preparing to unpack .../31-libopenblas-dev_0.3.30+ds-3_arm64.deb ... 334s Unpacking libopenblas-dev:arm64 (0.3.30+ds-3) ... 334s Selecting previously unselected package libthai-data. 334s Preparing to unpack .../32-libthai-data_0.1.29-2build2_all.deb ... 334s Unpacking libthai-data (0.1.29-2build2) ... 334s Selecting previously unselected package libthai0:arm64. 334s Preparing to unpack .../33-libthai0_0.1.29-2build2_arm64.deb ... 334s Unpacking libthai0:arm64 (0.1.29-2build2) ... 334s Selecting previously unselected package libpango-1.0-0:arm64. 334s Preparing to unpack .../34-libpango-1.0-0_1.56.3-2_arm64.deb ... 334s Unpacking libpango-1.0-0:arm64 (1.56.3-2) ... 334s Selecting previously unselected package libpangoft2-1.0-0:arm64. 334s Preparing to unpack .../35-libpangoft2-1.0-0_1.56.3-2_arm64.deb ... 334s Unpacking libpangoft2-1.0-0:arm64 (1.56.3-2) ... 334s Selecting previously unselected package libpangocairo-1.0-0:arm64. 334s Preparing to unpack .../36-libpangocairo-1.0-0_1.56.3-2_arm64.deb ... 334s Unpacking libpangocairo-1.0-0:arm64 (1.56.3-2) ... 334s Selecting previously unselected package libpaper2:arm64. 334s Preparing to unpack .../37-libpaper2_2.2.5-0.3_arm64.deb ... 334s Unpacking libpaper2:arm64 (2.2.5-0.3) ... 334s Selecting previously unselected package libpaper-utils. 334s Preparing to unpack .../38-libpaper-utils_2.2.5-0.3_arm64.deb ... 334s Unpacking libpaper-utils (2.2.5-0.3) ... 334s Selecting previously unselected package libsharpyuv0:arm64. 334s Preparing to unpack .../39-libsharpyuv0_1.5.0-0.1_arm64.deb ... 334s Unpacking libsharpyuv0:arm64 (1.5.0-0.1) ... 334s Selecting previously unselected package libsm6:arm64. 334s Preparing to unpack .../40-libsm6_2%3a1.2.6-1_arm64.deb ... 334s Unpacking libsm6:arm64 (2:1.2.6-1) ... 334s Selecting previously unselected package libtcl8.6:arm64. 334s Preparing to unpack .../41-libtcl8.6_8.6.17+dfsg-1_arm64.deb ... 334s Unpacking libtcl8.6:arm64 (8.6.17+dfsg-1) ... 334s Selecting previously unselected package libjbig0:arm64. 334s Preparing to unpack .../42-libjbig0_2.1-6.1ubuntu2_arm64.deb ... 334s Unpacking libjbig0:arm64 (2.1-6.1ubuntu2) ... 334s Selecting previously unselected package libwebp7:arm64. 334s Preparing to unpack .../43-libwebp7_1.5.0-0.1_arm64.deb ... 334s Unpacking libwebp7:arm64 (1.5.0-0.1) ... 334s Selecting previously unselected package libtiff6:arm64. 335s Preparing to unpack .../44-libtiff6_4.7.0-3ubuntu3_arm64.deb ... 335s Unpacking libtiff6:arm64 (4.7.0-3ubuntu3) ... 335s Selecting previously unselected package libxft2:arm64. 335s Preparing to unpack .../45-libxft2_2.3.6-1build1_arm64.deb ... 335s Unpacking libxft2:arm64 (2.3.6-1build1) ... 335s Selecting previously unselected package libxss1:arm64. 335s Preparing to unpack .../46-libxss1_1%3a1.2.3-1build3_arm64.deb ... 335s Unpacking libxss1:arm64 (1:1.2.3-1build3) ... 335s Selecting previously unselected package libtk8.6:arm64. 335s Preparing to unpack .../47-libtk8.6_8.6.17-1_arm64.deb ... 335s Unpacking libtk8.6:arm64 (8.6.17-1) ... 335s Selecting previously unselected package libxt6t64:arm64. 335s Preparing to unpack .../48-libxt6t64_1%3a1.2.1-1.3_arm64.deb ... 335s Unpacking libxt6t64:arm64 (1:1.2.1-1.3) ... 335s Selecting previously unselected package zip. 335s Preparing to unpack .../49-zip_3.0-15ubuntu2_arm64.deb ... 335s Unpacking zip (3.0-15ubuntu2) ... 335s Selecting previously unselected package unzip. 335s Preparing to unpack .../50-unzip_6.0-28ubuntu7_arm64.deb ... 335s Unpacking unzip (6.0-28ubuntu7) ... 335s Selecting previously unselected package xdg-utils. 335s Preparing to unpack .../51-xdg-utils_1.2.1-2ubuntu1_all.deb ... 335s Unpacking xdg-utils (1.2.1-2ubuntu1) ... 335s Selecting previously unselected package r-base-core. 335s Preparing to unpack .../52-r-base-core_4.5.2-1_arm64.deb ... 335s Unpacking r-base-core (4.5.2-1) ... 335s Selecting previously unselected package r-cran-codetools. 335s Preparing to unpack .../53-r-cran-codetools_0.2-20-1_all.deb ... 335s Unpacking r-cran-codetools (0.2-20-1) ... 335s Selecting previously unselected package r-cran-iterators. 335s Preparing to unpack .../54-r-cran-iterators_1.0.14-1build1_all.deb ... 335s Unpacking r-cran-iterators (1.0.14-1build1) ... 335s Selecting previously unselected package r-cran-foreach. 335s Preparing to unpack .../55-r-cran-foreach_1.5.2-1build1_all.deb ... 335s Unpacking r-cran-foreach (1.5.2-1build1) ... 335s Selecting previously unselected package r-cran-gam. 336s Preparing to unpack .../56-r-cran-gam_1.22-5-1_arm64.deb ... 336s Unpacking r-cran-gam (1.22-5-1) ... 336s Selecting previously unselected package r-cran-cli. 336s Preparing to unpack .../57-r-cran-cli_3.6.4-1_arm64.deb ... 336s Unpacking r-cran-cli (3.6.4-1) ... 336s Selecting previously unselected package r-cran-glue. 336s Preparing to unpack .../58-r-cran-glue_1.8.0-1_arm64.deb ... 336s Unpacking r-cran-glue (1.8.0-1) ... 336s Selecting previously unselected package r-cran-rlang. 336s Preparing to unpack .../59-r-cran-rlang_1.1.5-3_arm64.deb ... 336s Unpacking r-cran-rlang (1.1.5-3) ... 336s Selecting previously unselected package r-cran-lifecycle. 336s Preparing to unpack .../60-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 336s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 336s Selecting previously unselected package r-cran-gtable. 336s Preparing to unpack .../61-r-cran-gtable_0.3.6+dfsg-1_all.deb ... 336s Unpacking r-cran-gtable (0.3.6+dfsg-1) ... 336s Selecting previously unselected package r-cran-isoband. 336s Preparing to unpack .../62-r-cran-isoband_0.2.7-1_arm64.deb ... 336s Unpacking r-cran-isoband (0.2.7-1) ... 336s Selecting previously unselected package r-cran-mass. 336s Preparing to unpack .../63-r-cran-mass_7.3-65-1_arm64.deb ... 336s Unpacking r-cran-mass (7.3-65-1) ... 336s Selecting previously unselected package r-cran-lattice. 336s Preparing to unpack .../64-r-cran-lattice_0.22-7-1_arm64.deb ... 336s Unpacking r-cran-lattice (0.22-7-1) ... 336s Selecting previously unselected package r-cran-nlme. 336s Preparing to unpack .../65-r-cran-nlme_3.1.168-1_arm64.deb ... 336s Unpacking r-cran-nlme (3.1.168-1) ... 336s Selecting previously unselected package r-cran-matrix. 336s Preparing to unpack .../66-r-cran-matrix_1.7-4-1_arm64.deb ... 336s Unpacking r-cran-matrix (1.7-4-1) ... 336s Selecting previously unselected package r-cran-mgcv. 336s Preparing to unpack .../67-r-cran-mgcv_1.9-3-1_arm64.deb ... 336s Unpacking r-cran-mgcv (1.9-3-1) ... 336s Selecting previously unselected package r-cran-farver. 336s Preparing to unpack .../68-r-cran-farver_2.1.2-1_arm64.deb ... 336s Unpacking r-cran-farver (2.1.2-1) ... 336s Selecting previously unselected package r-cran-labeling. 336s Preparing to unpack .../69-r-cran-labeling_0.4.3-1_all.deb ... 336s Unpacking r-cran-labeling (0.4.3-1) ... 336s Selecting previously unselected package r-cran-colorspace. 336s Preparing to unpack .../70-r-cran-colorspace_2.1-1+dfsg-1_arm64.deb ... 336s Unpacking r-cran-colorspace (2.1-1+dfsg-1) ... 336s Selecting previously unselected package r-cran-munsell. 336s Preparing to unpack .../71-r-cran-munsell_0.5.1-1_all.deb ... 336s Unpacking r-cran-munsell (0.5.1-1) ... 337s Selecting previously unselected package r-cran-r6. 337s Preparing to unpack .../72-r-cran-r6_2.6.1-1_all.deb ... 337s Unpacking r-cran-r6 (2.6.1-1) ... 337s Selecting previously unselected package r-cran-rcolorbrewer. 337s Preparing to unpack .../73-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 337s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 337s Selecting previously unselected package r-cran-viridislite. 337s Preparing to unpack .../74-r-cran-viridislite_0.4.2-2_all.deb ... 337s Unpacking r-cran-viridislite (0.4.2-2) ... 337s Selecting previously unselected package r-cran-scales. 337s Preparing to unpack .../75-r-cran-scales_1.3.0-1_all.deb ... 337s Unpacking r-cran-scales (1.3.0-1) ... 337s Selecting previously unselected package r-cran-fansi. 337s Preparing to unpack .../76-r-cran-fansi_1.0.6-2_arm64.deb ... 337s Unpacking r-cran-fansi (1.0.6-2) ... 337s Selecting previously unselected package r-cran-magrittr. 337s Preparing to unpack .../77-r-cran-magrittr_2.0.3-1_arm64.deb ... 337s Unpacking r-cran-magrittr (2.0.3-1) ... 337s Selecting previously unselected package r-cran-utf8. 337s Preparing to unpack .../78-r-cran-utf8_1.2.4-1_arm64.deb ... 337s Unpacking r-cran-utf8 (1.2.4-1) ... 337s Selecting previously unselected package r-cran-vctrs. 337s Preparing to unpack .../79-r-cran-vctrs_0.6.5-1_arm64.deb ... 337s Unpacking r-cran-vctrs (0.6.5-1) ... 337s Selecting previously unselected package r-cran-pillar. 337s Preparing to unpack .../80-r-cran-pillar_1.10.1+dfsg-1_all.deb ... 337s Unpacking r-cran-pillar (1.10.1+dfsg-1) ... 337s Selecting previously unselected package r-cran-pkgconfig. 337s Preparing to unpack .../81-r-cran-pkgconfig_2.0.3-2build2_all.deb ... 337s Unpacking r-cran-pkgconfig (2.0.3-2build2) ... 337s Selecting previously unselected package r-cran-tibble. 337s Preparing to unpack .../82-r-cran-tibble_3.2.1+dfsg-3_arm64.deb ... 337s Unpacking r-cran-tibble (3.2.1+dfsg-3) ... 337s Selecting previously unselected package r-cran-withr. 337s Preparing to unpack .../83-r-cran-withr_3.0.2+dfsg-1_all.deb ... 337s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 337s Selecting previously unselected package r-cran-ggplot2. 337s Preparing to unpack .../84-r-cran-ggplot2_3.5.1+dfsg-1_all.deb ... 337s Unpacking r-cran-ggplot2 (3.5.1+dfsg-1) ... 337s Selecting previously unselected package r-cran-inline. 337s Preparing to unpack .../85-r-cran-inline_0.3.21-1_all.deb ... 337s Unpacking r-cran-inline (0.3.21-1) ... 337s Selecting previously unselected package seqtk. 337s Preparing to unpack .../86-seqtk_1.4-2_arm64.deb ... 337s Unpacking seqtk (1.4-2) ... 337s Selecting previously unselected package python3-pysam. 338s Preparing to unpack .../87-python3-pysam_0.23.3+ds-2_arm64.deb ... 338s Unpacking python3-pysam (0.23.3+ds-2) ... 338s Selecting previously unselected package r-cran-littler. 338s Preparing to unpack .../88-r-cran-littler_0.3.21-2_arm64.deb ... 338s Unpacking r-cran-littler (0.3.21-2) ... 338s Selecting previously unselected package r-cran-pkgkitten. 338s Preparing to unpack .../89-r-cran-pkgkitten_0.2.4-1_all.deb ... 338s Unpacking r-cran-pkgkitten (0.2.4-1) ... 338s Selecting previously unselected package r-cran-rcpp. 338s Preparing to unpack .../90-r-cran-rcpp_1.1.0-1_arm64.deb ... 338s Unpacking r-cran-rcpp (1.1.0-1) ... 338s Selecting previously unselected package r-cran-rcppgsl. 338s Preparing to unpack .../91-r-cran-rcppgsl_0.3.13-1build1_arm64.deb ... 338s Unpacking r-cran-rcppgsl (0.3.13-1build1) ... 338s Selecting previously unselected package mapdamage. 338s Preparing to unpack .../92-mapdamage_2.2.2+dfsg-1_all.deb ... 338s Unpacking mapdamage (2.2.2+dfsg-1) ... 338s Setting up libhtscodecs2:arm64 (1.6.1-2) ... 338s Setting up libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 338s Setting up libpixman-1-0:arm64 (0.46.4-1) ... 338s Setting up libsharpyuv0:arm64 (1.5.0-0.1) ... 338s Setting up liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 338s Setting up seqtk (1.4-2) ... 338s Setting up libxrender1:arm64 (1:0.9.12-1) ... 338s Setting up libdatrie1:arm64 (0.2.14-1) ... 338s Setting up libgslcblas0:arm64 (2.8+dfsg-5.1ubuntu1) ... 338s Setting up libxcb-render0:arm64 (1.17.0-2build1) ... 338s Setting up unzip (6.0-28ubuntu7) ... 338s Setting up x11-common (1:7.7+24ubuntu1) ... 339s Setting up libdeflate0:arm64 (1.23-2) ... 339s Setting up libxcb-shm0:arm64 (1.17.0-2build1) ... 339s Setting up libgomp1:arm64 (15.2.0-9ubuntu1) ... 339s Setting up libjbig0:arm64 (2.1-6.1ubuntu2) ... 339s Setting up zip (3.0-15ubuntu2) ... 339s Setting up libblas3:arm64 (3.12.1-7) ... 339s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 339s Setting up fonts-dejavu-mono (2.37-8) ... 339s Setting up libtcl8.6:arm64 (8.6.17+dfsg-1) ... 339s Setting up fonts-dejavu-core (2.37-8) ... 339s Setting up libjpeg-turbo8:arm64 (2.1.5-4ubuntu2) ... 339s Setting up libgfortran5:arm64 (15.2.0-9ubuntu1) ... 339s Setting up libwebp7:arm64 (1.5.0-0.1) ... 339s Setting up libhts3t64:arm64 (1.22.1+ds2-1) ... 339s Setting up libharfbuzz0b:arm64 (12.1.0-1) ... 339s Setting up libthai-data (0.1.29-2build2) ... 339s Setting up libxss1:arm64 (1:1.2.3-1build3) ... 339s Setting up libpaper2:arm64 (2.2.5-0.3) ... 339s Setting up libgsl28:arm64 (2.8+dfsg-5.1ubuntu1) ... 339s Setting up xdg-utils (1.2.1-2ubuntu1) ... 339s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 339s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 339s Setting up libice6:arm64 (2:1.1.1-1) ... 339s Setting up liblapack3:arm64 (3.12.1-7) ... 339s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 339s Setting up libgsl-dev (2.8+dfsg-5.1ubuntu1) ... 339s Setting up libopenblas0-pthread:arm64 (0.3.30+ds-3) ... 339s update-alternatives: using /usr/lib/aarch64-linux-gnu/openblas-pthread/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 339s update-alternatives: using /usr/lib/aarch64-linux-gnu/openblas-pthread/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 339s update-alternatives: using /usr/lib/aarch64-linux-gnu/openblas-pthread/libopenblas.so.0 to provide /usr/lib/aarch64-linux-gnu/libopenblas.so.0 (libopenblas.so.0-aarch64-linux-gnu) in auto mode 339s Setting up python3-pysam (0.23.3+ds-2) ... 339s Setting up fontconfig-config (2.15.0-2.3ubuntu1) ... 339s Setting up libpaper-utils (2.2.5-0.3) ... 339s Setting up libthai0:arm64 (0.1.29-2build2) ... 339s Setting up libopenblas0:arm64 (0.3.30+ds-3) ... 339s Setting up libtiff6:arm64 (4.7.0-3ubuntu3) ... 339s Setting up libfontconfig1:arm64 (2.15.0-2.3ubuntu1) ... 339s Setting up libsm6:arm64 (2:1.2.6-1) ... 339s Setting up libopenblas-pthread-dev:arm64 (0.3.30+ds-3) ... 339s update-alternatives: using /usr/lib/aarch64-linux-gnu/openblas-pthread/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode 339s update-alternatives: using /usr/lib/aarch64-linux-gnu/openblas-pthread/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode 339s update-alternatives: using /usr/lib/aarch64-linux-gnu/openblas-pthread/libopenblas.so to provide /usr/lib/aarch64-linux-gnu/libopenblas.so (libopenblas.so-aarch64-linux-gnu) in auto mode 339s Setting up fontconfig (2.15.0-2.3ubuntu1) ... 341s Regenerating fonts cache... done. 341s Setting up libxft2:arm64 (2.3.6-1build1) ... 341s Setting up libtk8.6:arm64 (8.6.17-1) ... 341s Setting up libpango-1.0-0:arm64 (1.56.3-2) ... 341s Setting up libcairo2:arm64 (1.18.4-1build1) ... 341s Setting up libopenblas-dev:arm64 (0.3.30+ds-3) ... 341s Setting up libxt6t64:arm64 (1:1.2.1-1.3) ... 341s Setting up libpangoft2-1.0-0:arm64 (1.56.3-2) ... 341s Setting up libpangocairo-1.0-0:arm64 (1.56.3-2) ... 341s Setting up r-base-core (4.5.2-1) ... 342s Creating config file /etc/R/Renviron with new version 342s Setting up r-cran-labeling (0.4.3-1) ... 342s Setting up r-cran-lattice (0.22-7-1) ... 342s Setting up r-cran-nlme (3.1.168-1) ... 342s Setting up r-cran-farver (2.1.2-1) ... 342s Setting up r-cran-viridislite (0.4.2-2) ... 342s Setting up r-cran-r6 (2.6.1-1) ... 342s Setting up r-cran-pkgkitten (0.2.4-1) ... 342s Setting up r-cran-magrittr (2.0.3-1) ... 342s Setting up r-cran-littler (0.3.21-2) ... 342s Setting up r-cran-rcpp (1.1.0-1) ... 342s Setting up r-cran-codetools (0.2-20-1) ... 342s Setting up r-cran-inline (0.3.21-1) ... 342s Setting up r-cran-rlang (1.1.5-3) ... 342s Setting up r-cran-withr (3.0.2+dfsg-1) ... 342s Setting up r-cran-iterators (1.0.14-1build1) ... 342s Setting up r-cran-foreach (1.5.2-1build1) ... 342s Setting up r-cran-fansi (1.0.6-2) ... 342s Setting up r-cran-mass (7.3-65-1) ... 342s Setting up r-cran-glue (1.8.0-1) ... 342s Setting up r-cran-gam (1.22-5-1) ... 342s Setting up r-cran-cli (3.6.4-1) ... 342s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 342s Setting up r-cran-pkgconfig (2.0.3-2build2) ... 342s Setting up r-cran-utf8 (1.2.4-1) ... 342s 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-----------------------] 350s autopkgtest [09:41:06]: test run-r-packages-check: - - - - - - - - - - results - - - - - - - - - - 350s run-r-packages-check PASS 351s autopkgtest [09:41:07]: @@@@@@@@@@@@@@@@@@@@ summary 351s run-unit-test PASS 351s run-r-packages-check PASS