0s autopkgtest [03:49:58]: starting date and time: 2026-02-05 03:49:58+0000 0s autopkgtest [03:49:58]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [03:49:58]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.hjwpzu60/out --timeout-copy=6000 --needs-internet=try --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc,src:chiark-tcl --apt-upgrade libvcflib --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=glibc/2.42-2ubuntu5 chiark-tcl/1.3.7build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-arm64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@sto01-arm64-2.secgroup --name adt-resolute-arm64-libvcflib-20260205-034957-juju-7f2275-prod-proposed-migration-environment-15-5e3023cc-c5fc-46c5-b7a0-5157201d23d7 --image adt/ubuntu-resolute-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-autopkgtest-workers-arm64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 4s Creating nova instance adt-resolute-arm64-libvcflib-20260205-034957-juju-7f2275-prod-proposed-migration-environment-15-5e3023cc-c5fc-46c5-b7a0-5157201d23d7 from image adt/ubuntu-resolute-arm64-server-20260204.img (UUID f58d981d-b271-4157-b9b1-fd704695563c)... 61s autopkgtest [03:50:59]: testbed dpkg architecture: arm64 62s autopkgtest [03:51:00]: testbed apt version: 3.1.14 62s autopkgtest [03:51:00]: @@@@@@@@@@@@@@@@@@@@ test bed setup 62s autopkgtest [03:51:00]: testbed release detected to be: None 63s autopkgtest [03:51:01]: updating testbed package index (apt update) 63s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 63s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 63s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 63s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 63s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [5260 B] 63s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1719 kB] 64s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [35.4 kB] 64s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [227 kB] 64s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 Packages [265 kB] 64s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 c-n-f Metadata [7328 B] 64s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 Packages [52.9 kB] 64s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 c-n-f Metadata [328 B] 64s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 Packages [1481 kB] 64s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 c-n-f Metadata [40.2 kB] 64s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 Packages [26.0 kB] 64s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 c-n-f Metadata [776 B] 68s Fetched 3984 kB in 1s (4067 kB/s) 68s Reading package lists... 69s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 69s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 69s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 69s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 70s Reading package lists... 70s Reading package lists... 71s Building dependency tree... 71s Reading state information... 71s Calculating upgrade... 71s The following packages will be upgraded: 71s libc-bin libc-gconv-modules-extra libc6 locales pollinate python3-linkify-it 71s python3-referencing sed 71s 8 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 71s Need to get 8110 kB of archives. 71s After this operation, 0 B of additional disk space will be used. 71s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 sed arm64 4.9-2build3 [193 kB] 71s Get:2 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 libc-gconv-modules-extra arm64 2.42-2ubuntu5 [1413 kB] 72s Get:3 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 libc6 arm64 2.42-2ubuntu5 [1594 kB] 74s Get:4 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 libc-bin arm64 2.42-2ubuntu5 [599 kB] 74s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 locales all 2.42-2ubuntu5 [4255 kB] 75s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-linkify-it all 2.0.3-1ubuntu3 [19.4 kB] 75s Get:7 http://ftpmaster.internal/ubuntu resolute/main arm64 pollinate all 4.33-4ubuntu5 [14.0 kB] 75s Get:8 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-referencing all 0.36.2-1ubuntu2 [22.2 kB] 75s dpkg-preconfigure: unable to re-open stdin: No such file or directory 75s Fetched 8110 kB in 4s (2221 kB/s) 76s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 89360 files and directories currently installed.) 76s Preparing to unpack .../sed_4.9-2build3_arm64.deb ... 76s Unpacking sed (4.9-2build3) over (4.9-2build2) ... 76s Setting up sed (4.9-2build3) ... 76s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 89360 files and directories currently installed.) 76s Preparing to unpack .../libc-gconv-modules-extra_2.42-2ubuntu5_arm64.deb ... 76s Unpacking libc-gconv-modules-extra:arm64 (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 76s Setting up libc-gconv-modules-extra:arm64 (2.42-2ubuntu5) ... 76s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 89360 files and directories currently installed.) 76s Preparing to unpack .../libc6_2.42-2ubuntu5_arm64.deb ... 76s Unpacking libc6:arm64 (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 76s Setting up libc6:arm64 (2.42-2ubuntu5) ... 77s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 89360 files and directories currently installed.) 77s Preparing to unpack .../libc-bin_2.42-2ubuntu5_arm64.deb ... 77s Unpacking libc-bin (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 77s Setting up libc-bin (2.42-2ubuntu5) ... 77s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 89360 files and directories currently installed.) 77s Preparing to unpack .../locales_2.42-2ubuntu5_all.deb ... 77s Unpacking locales (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 77s Preparing to unpack .../python3-linkify-it_2.0.3-1ubuntu3_all.deb ... 77s Unpacking python3-linkify-it (2.0.3-1ubuntu3) over (2.0.3-1ubuntu2) ... 77s Preparing to unpack .../pollinate_4.33-4ubuntu5_all.deb ... 77s Unpacking pollinate (4.33-4ubuntu5) over (4.33-4ubuntu4) ... 77s Preparing to unpack .../python3-referencing_0.36.2-1ubuntu2_all.deb ... 77s Unpacking python3-referencing (0.36.2-1ubuntu2) over (0.36.2-1ubuntu1) ... 78s Setting up locales (2.42-2ubuntu5) ... 78s Generating locales (this might take a while)... 80s en_US.UTF-8... done 80s Generation complete. 80s Setting up pollinate (4.33-4ubuntu5) ... 91s Setting up python3-linkify-it (2.0.3-1ubuntu3) ... 91s Setting up python3-referencing (0.36.2-1ubuntu2) ... 91s Processing triggers for man-db (2.13.1-1) ... 92s Processing triggers for install-info (7.2-5) ... 92s Processing triggers for systemd (259-1ubuntu3) ... 93s autopkgtest [03:51:31]: upgrading testbed (apt dist-upgrade and autopurge) 93s Reading package lists... 94s Building dependency tree... 94s Reading state information... 94s Calculating upgrade... 94s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 94s Reading package lists... 95s Building dependency tree... 95s Reading state information... 95s Solving dependencies... 95s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 95s autopkgtest [03:51:33]: rebooting testbed after setup commands that affected boot 133s autopkgtest [03:52:11]: testbed running kernel: Linux 6.18.0-9-generic #9-Ubuntu SMP PREEMPT_DYNAMIC Mon Jan 12 16:41:39 UTC 2026 136s autopkgtest [03:52:14]: @@@@@@@@@@@@@@@@@@@@ apt-source libvcflib 139s Get:1 http://ftpmaster.internal/ubuntu resolute/universe libvcflib 1.0.12+dfsg-1 (dsc) [2408 B] 139s Get:2 http://ftpmaster.internal/ubuntu resolute/universe libvcflib 1.0.12+dfsg-1 (tar) [9047 kB] 139s Get:3 http://ftpmaster.internal/ubuntu resolute/universe libvcflib 1.0.12+dfsg-1 (diff) [74.9 kB] 139s gpgv: Signature made Sun Feb 16 13:58:40 2025 UTC 139s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 139s gpgv: issuer "tille@debian.org" 139s gpgv: Can't check signature: No public key 139s dpkg-source: warning: cannot verify inline signature for ./libvcflib_1.0.12+dfsg-1.dsc: no acceptable signature found 139s autopkgtest [03:52:17]: testing package libvcflib version 1.0.12+dfsg-1 140s autopkgtest [03:52:18]: build not needed 143s autopkgtest [03:52:21]: test command1: preparing testbed 144s Reading package lists... 144s Building dependency tree... 144s Reading state information... 144s Solving dependencies... 144s The following NEW packages will be installed: 144s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono libblas3 144s libcairo2 libdatrie1 libdeflate0 libdisorder0 libfastahack0 libfontconfig1 144s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhts3t64 libhtscodecs2 144s libice6 libjbig0 libjpeg-turbo8 libjpeg8 liblapack3 liblerc4 libpango-1.0-0 144s libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libpixman-1-0 144s libsharpyuv0 libsm6 libsmithwaterman0 libtabixpp0t64 libtcl8.6 libthai-data 144s libthai0 libtiff6 libtk8.6 libvcflib-tools libvcflib2 libwebp7 libwfa2-0 144s libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64 r-base-core 144s r-cran-cli r-cran-fansi r-cran-farver r-cran-ggplot2 r-cran-glue 144s r-cran-gridbase r-cran-gtable r-cran-isoband r-cran-labeling r-cran-lattice 144s r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix 144s r-cran-mgcv r-cran-nlme r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten 144s r-cran-plyr r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-rlang 144s r-cran-scales r-cran-tibble r-cran-utf8 r-cran-vctrs r-cran-viridislite 144s r-cran-withr unzip x11-common xdg-utils zip 144s 0 upgraded, 84 newly installed, 0 to remove and 0 not upgraded. 144s Need to get 71.5 MB of archives. 144s After this operation, 141 MB of additional disk space will be used. 144s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-mono all 2.37-8build1 [502 kB] 144s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-core all 2.37-8build1 [834 kB] 145s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 fontconfig-config arm64 2.17.1-3ubuntu1 [38.5 kB] 145s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 libfontconfig1 arm64 2.17.1-3ubuntu1 [144 kB] 145s Get:5 http://ftpmaster.internal/ubuntu resolute/main arm64 fontconfig arm64 2.17.1-3ubuntu1 [181 kB] 145s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 libblas3 arm64 3.12.1-7ubuntu1 [181 kB] 145s Get:7 http://ftpmaster.internal/ubuntu resolute/main arm64 libpixman-1-0 arm64 0.46.4-1 [204 kB] 145s Get:8 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-render0 arm64 1.17.0-2ubuntu1 [16.4 kB] 145s Get:9 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-shm0 arm64 1.17.0-2ubuntu1 [5938 B] 145s Get:10 http://ftpmaster.internal/ubuntu resolute/main arm64 libxrender1 arm64 1:0.9.12-1 [19.5 kB] 145s Get:11 http://ftpmaster.internal/ubuntu resolute/main arm64 libcairo2 arm64 1.18.4-3 [556 kB] 145s Get:12 http://ftpmaster.internal/ubuntu resolute/main arm64 libdatrie1 arm64 0.2.14-1 [19.6 kB] 145s Get:13 http://ftpmaster.internal/ubuntu resolute/main arm64 libdeflate0 arm64 1.23-2 [46.4 kB] 145s Get:14 http://ftpmaster.internal/ubuntu resolute/universe arm64 libdisorder0 arm64 0.0.2+git20130809.8062ee1-4build2 [4846 B] 145s Get:15 http://ftpmaster.internal/ubuntu resolute/universe arm64 libfastahack0 arm64 1.0.0+dfsg-11build1 [26.8 kB] 145s Get:16 http://ftpmaster.internal/ubuntu resolute/main arm64 libgfortran5 arm64 15.2.0-12ubuntu1 [451 kB] 145s Get:17 http://ftpmaster.internal/ubuntu resolute/main arm64 libgomp1 arm64 15.2.0-12ubuntu1 [147 kB] 145s Get:18 http://ftpmaster.internal/ubuntu resolute/main arm64 libgraphite2-3 arm64 1.3.14-11ubuntu1 [72.1 kB] 145s Get:19 http://ftpmaster.internal/ubuntu resolute/main arm64 libharfbuzz0b arm64 12.3.2-1 [510 kB] 145s Get:20 http://ftpmaster.internal/ubuntu resolute/universe arm64 libhtscodecs2 arm64 1.6.1-2build1 [83.8 kB] 145s Get:21 http://ftpmaster.internal/ubuntu resolute/universe arm64 libhts3t64 arm64 1.22.1+ds2-1 [442 kB] 145s Get:22 http://ftpmaster.internal/ubuntu resolute/main arm64 x11-common all 1:7.7+24ubuntu1 [22.4 kB] 145s Get:23 http://ftpmaster.internal/ubuntu resolute/main arm64 libice6 arm64 2:1.1.1-1build1 [43.0 kB] 145s Get:24 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg-turbo8 arm64 2.1.5-4ubuntu2 [165 kB] 145s Get:25 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 145s Get:26 http://ftpmaster.internal/ubuntu resolute/main arm64 liblapack3 arm64 3.12.1-7ubuntu1 [2299 kB] 145s Get:27 http://ftpmaster.internal/ubuntu resolute/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu2 [174 kB] 145s Get:28 http://ftpmaster.internal/ubuntu resolute/main arm64 libthai-data all 0.1.30-1 [155 kB] 145s Get:29 http://ftpmaster.internal/ubuntu resolute/main arm64 libthai0 arm64 0.1.30-1 [18.3 kB] 145s Get:30 http://ftpmaster.internal/ubuntu resolute/main arm64 libpango-1.0-0 arm64 1.57.0-1 [238 kB] 145s Get:31 http://ftpmaster.internal/ubuntu resolute/main arm64 libpangoft2-1.0-0 arm64 1.57.0-1 [51.5 kB] 145s Get:32 http://ftpmaster.internal/ubuntu resolute/main arm64 libpangocairo-1.0-0 arm64 1.57.0-1 [27.9 kB] 145s Get:33 http://ftpmaster.internal/ubuntu resolute/main arm64 libpaper2 arm64 2.2.5-0.3build1 [17.3 kB] 145s Get:34 http://ftpmaster.internal/ubuntu resolute/main arm64 libpaper-utils arm64 2.2.5-0.3build1 [15.4 kB] 145s Get:35 http://ftpmaster.internal/ubuntu resolute/main arm64 libsharpyuv0 arm64 1.5.0-0.1build1 [16.7 kB] 145s Get:36 http://ftpmaster.internal/ubuntu resolute/main arm64 libsm6 arm64 2:1.2.6-1 [16.6 kB] 145s Get:37 http://ftpmaster.internal/ubuntu resolute/universe arm64 libsmithwaterman0 arm64 0.0+git20160702.2610e25-12build1 [35.5 kB] 145s Get:38 http://ftpmaster.internal/ubuntu resolute/universe arm64 libtabixpp0t64 arm64 1.1.2-2.1build2 [10.0 kB] 145s Get:39 http://ftpmaster.internal/ubuntu resolute/main arm64 libtcl8.6 arm64 8.6.17+dfsg-1build1 [983 kB] 145s Get:40 http://ftpmaster.internal/ubuntu resolute/main arm64 libjbig0 arm64 2.1-6.1ubuntu3 [29.2 kB] 145s Get:41 http://ftpmaster.internal/ubuntu resolute/main arm64 libwebp7 arm64 1.5.0-0.1build1 [205 kB] 145s Get:42 http://ftpmaster.internal/ubuntu resolute/main arm64 libtiff6 arm64 4.7.0-3ubuntu3 [196 kB] 145s Get:43 http://ftpmaster.internal/ubuntu resolute/main arm64 libxft2 arm64 2.3.6-1build2 [43.2 kB] 145s Get:44 http://ftpmaster.internal/ubuntu resolute/main arm64 libxss1 arm64 1:1.2.3-1build4 [7102 B] 145s Get:45 http://ftpmaster.internal/ubuntu resolute/main arm64 libtk8.6 arm64 8.6.17-1 [811 kB] 145s Get:46 http://ftpmaster.internal/ubuntu resolute/universe arm64 libwfa2-0 arm64 2.3.3-4build1 [62.3 kB] 145s Get:47 http://ftpmaster.internal/ubuntu resolute/universe arm64 libvcflib2 arm64 1.0.12+dfsg-1 [228 kB] 145s Get:48 http://ftpmaster.internal/ubuntu resolute/main arm64 zip arm64 3.0-15ubuntu2 [175 kB] 145s Get:49 http://ftpmaster.internal/ubuntu resolute/main arm64 unzip arm64 6.0-29ubuntu1 [176 kB] 145s Get:50 http://ftpmaster.internal/ubuntu resolute/main arm64 xdg-utils all 1.2.1-2ubuntu2 [66.1 kB] 145s Get:51 http://ftpmaster.internal/ubuntu resolute/main arm64 libxt6t64 arm64 1:1.2.1-1.3 [168 kB] 146s Get:52 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-base-core arm64 4.5.2-1ubuntu2 [28.6 MB] 148s Get:53 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-littler arm64 0.3.21-2 [83.6 kB] 148s Get:54 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 148s Get:55 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rcpp arm64 1.1.0-1 [2011 kB] 148s Get:56 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-plyr arm64 1.8.9-1 [831 kB] 148s Get:57 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-cli arm64 3.6.4-1 [1374 kB] 149s Get:58 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-glue arm64 1.8.0-1 [163 kB] 149s Get:59 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rlang arm64 1.1.5-3 [1706 kB] 149s Get:60 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-lifecycle all 1.0.5+dfsg-1 [120 kB] 149s Get:61 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-gtable all 0.3.6+dfsg-1 [199 kB] 149s Get:62 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-isoband arm64 0.2.7-1 [1481 kB] 149s Get:63 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-mass arm64 7.3-65-1 [1109 kB] 150s Get:64 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-lattice arm64 0.22-7-1 [1365 kB] 150s Get:65 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-nlme arm64 3.1.168-1 [2310 kB] 150s Get:66 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-matrix arm64 1.7-4-1 [4146 kB] 150s Get:67 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-mgcv arm64 1.9-4-1 [3546 kB] 150s Get:68 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-farver arm64 2.1.2-1 [1344 kB] 150s Get:69 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-labeling all 0.4.3-1 [62.1 kB] 150s Get:70 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-r6 all 2.6.1-1 [101 kB] 150s Get:71 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build2 [54.0 kB] 150s Get:72 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-viridislite all 0.4.2-2 [1088 kB] 151s Get:73 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-scales all 1.4.0-1 [725 kB] 151s Get:74 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-fansi arm64 1.0.6-2 [627 kB] 151s Get:75 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 151s Get:76 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 151s Get:77 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 151s Get:78 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-pillar all 1.11.1+dfsg-1 [456 kB] 151s Get:79 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-pkgconfig all 2.0.3-2build2 [20.4 kB] 151s Get:80 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-3 [420 kB] 151s Get:81 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 151s Get:82 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-ggplot2 all 3.5.1+dfsg-1 [3940 kB] 151s Get:83 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-gridbase all 0.4-7-5build2 [162 kB] 151s Get:84 http://ftpmaster.internal/ubuntu resolute/universe arm64 libvcflib-tools arm64 1.0.12+dfsg-1 [611 kB] 151s Preconfiguring packages ... 151s Fetched 71.5 MB in 7s (10.8 MB/s) 152s Selecting previously unselected package fonts-dejavu-mono. 152s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 89360 files and directories currently installed.) 152s Preparing to unpack .../00-fonts-dejavu-mono_2.37-8build1_all.deb ... 152s Unpacking fonts-dejavu-mono (2.37-8build1) ... 152s Selecting previously unselected package fonts-dejavu-core. 152s Preparing to unpack .../01-fonts-dejavu-core_2.37-8build1_all.deb ... 152s Unpacking fonts-dejavu-core (2.37-8build1) ... 152s Selecting previously unselected package fontconfig-config. 152s Preparing to unpack .../02-fontconfig-config_2.17.1-3ubuntu1_arm64.deb ... 152s Unpacking fontconfig-config (2.17.1-3ubuntu1) ... 152s Selecting previously unselected package libfontconfig1:arm64. 152s Preparing to unpack .../03-libfontconfig1_2.17.1-3ubuntu1_arm64.deb ... 152s Unpacking libfontconfig1:arm64 (2.17.1-3ubuntu1) ... 152s Selecting previously unselected package fontconfig. 152s Preparing to unpack .../04-fontconfig_2.17.1-3ubuntu1_arm64.deb ... 152s Unpacking fontconfig (2.17.1-3ubuntu1) ... 152s Selecting previously unselected package libblas3:arm64. 152s Preparing to unpack .../05-libblas3_3.12.1-7ubuntu1_arm64.deb ... 152s Unpacking libblas3:arm64 (3.12.1-7ubuntu1) ... 152s Selecting previously unselected package libpixman-1-0:arm64. 152s Preparing to unpack .../06-libpixman-1-0_0.46.4-1_arm64.deb ... 152s Unpacking libpixman-1-0:arm64 (0.46.4-1) ... 152s Selecting previously unselected package libxcb-render0:arm64. 152s Preparing to unpack .../07-libxcb-render0_1.17.0-2ubuntu1_arm64.deb ... 152s Unpacking libxcb-render0:arm64 (1.17.0-2ubuntu1) ... 152s Selecting previously unselected package libxcb-shm0:arm64. 152s Preparing to unpack .../08-libxcb-shm0_1.17.0-2ubuntu1_arm64.deb ... 152s Unpacking libxcb-shm0:arm64 (1.17.0-2ubuntu1) ... 152s Selecting previously unselected package libxrender1:arm64. 152s Preparing to unpack .../09-libxrender1_1%3a0.9.12-1_arm64.deb ... 152s Unpacking libxrender1:arm64 (1:0.9.12-1) ... 152s Selecting previously unselected package libcairo2:arm64. 152s Preparing to unpack .../10-libcairo2_1.18.4-3_arm64.deb ... 152s Unpacking libcairo2:arm64 (1.18.4-3) ... 152s Selecting previously unselected package libdatrie1:arm64. 152s Preparing to unpack .../11-libdatrie1_0.2.14-1_arm64.deb ... 152s Unpacking libdatrie1:arm64 (0.2.14-1) ... 152s Selecting previously unselected package libdeflate0:arm64. 152s Preparing to unpack .../12-libdeflate0_1.23-2_arm64.deb ... 152s Unpacking libdeflate0:arm64 (1.23-2) ... 152s Selecting previously unselected package libdisorder0:arm64. 152s Preparing to unpack .../13-libdisorder0_0.0.2+git20130809.8062ee1-4build2_arm64.deb ... 152s Unpacking libdisorder0:arm64 (0.0.2+git20130809.8062ee1-4build2) ... 153s Selecting previously unselected package libfastahack0:arm64. 153s Preparing to unpack .../14-libfastahack0_1.0.0+dfsg-11build1_arm64.deb ... 153s Unpacking libfastahack0:arm64 (1.0.0+dfsg-11build1) ... 153s Selecting previously unselected package libgfortran5:arm64. 153s Preparing to unpack .../15-libgfortran5_15.2.0-12ubuntu1_arm64.deb ... 153s Unpacking libgfortran5:arm64 (15.2.0-12ubuntu1) ... 153s Selecting previously unselected package libgomp1:arm64. 153s Preparing to unpack .../16-libgomp1_15.2.0-12ubuntu1_arm64.deb ... 153s Unpacking libgomp1:arm64 (15.2.0-12ubuntu1) ... 153s Selecting previously unselected package libgraphite2-3:arm64. 153s Preparing to unpack .../17-libgraphite2-3_1.3.14-11ubuntu1_arm64.deb ... 153s Unpacking libgraphite2-3:arm64 (1.3.14-11ubuntu1) ... 153s Selecting previously unselected package libharfbuzz0b:arm64. 153s Preparing to unpack .../18-libharfbuzz0b_12.3.2-1_arm64.deb ... 153s Unpacking libharfbuzz0b:arm64 (12.3.2-1) ... 153s Selecting previously unselected package libhtscodecs2:arm64. 153s Preparing to unpack .../19-libhtscodecs2_1.6.1-2build1_arm64.deb ... 153s Unpacking libhtscodecs2:arm64 (1.6.1-2build1) ... 153s Selecting previously unselected package libhts3t64:arm64. 153s Preparing to unpack .../20-libhts3t64_1.22.1+ds2-1_arm64.deb ... 153s Unpacking libhts3t64:arm64 (1.22.1+ds2-1) ... 153s Selecting previously unselected package x11-common. 153s Preparing to unpack .../21-x11-common_1%3a7.7+24ubuntu1_all.deb ... 153s Unpacking x11-common (1:7.7+24ubuntu1) ... 153s Selecting previously unselected package libice6:arm64. 153s Preparing to unpack .../22-libice6_2%3a1.1.1-1build1_arm64.deb ... 153s Unpacking libice6:arm64 (2:1.1.1-1build1) ... 153s Selecting previously unselected package libjpeg-turbo8:arm64. 153s Preparing to unpack .../23-libjpeg-turbo8_2.1.5-4ubuntu2_arm64.deb ... 153s Unpacking libjpeg-turbo8:arm64 (2.1.5-4ubuntu2) ... 153s Selecting previously unselected package libjpeg8:arm64. 153s Preparing to unpack .../24-libjpeg8_8c-2ubuntu11_arm64.deb ... 153s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 153s Selecting previously unselected package liblapack3:arm64. 153s Preparing to unpack .../25-liblapack3_3.12.1-7ubuntu1_arm64.deb ... 153s Unpacking liblapack3:arm64 (3.12.1-7ubuntu1) ... 153s Selecting previously unselected package liblerc4:arm64. 153s Preparing to unpack .../26-liblerc4_4.0.0+ds-5ubuntu2_arm64.deb ... 153s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu2) ... 153s Selecting previously unselected package libthai-data. 153s Preparing to unpack .../27-libthai-data_0.1.30-1_all.deb ... 153s Unpacking libthai-data (0.1.30-1) ... 153s Selecting previously unselected package libthai0:arm64. 153s Preparing to unpack .../28-libthai0_0.1.30-1_arm64.deb ... 153s Unpacking libthai0:arm64 (0.1.30-1) ... 153s Selecting previously unselected package libpango-1.0-0:arm64. 153s Preparing to unpack .../29-libpango-1.0-0_1.57.0-1_arm64.deb ... 153s Unpacking libpango-1.0-0:arm64 (1.57.0-1) ... 153s Selecting previously unselected package libpangoft2-1.0-0:arm64. 153s Preparing to unpack .../30-libpangoft2-1.0-0_1.57.0-1_arm64.deb ... 153s Unpacking libpangoft2-1.0-0:arm64 (1.57.0-1) ... 153s Selecting previously unselected package libpangocairo-1.0-0:arm64. 153s Preparing to unpack .../31-libpangocairo-1.0-0_1.57.0-1_arm64.deb ... 153s Unpacking libpangocairo-1.0-0:arm64 (1.57.0-1) ... 153s Selecting previously unselected package libpaper2:arm64. 153s Preparing to unpack .../32-libpaper2_2.2.5-0.3build1_arm64.deb ... 153s Unpacking libpaper2:arm64 (2.2.5-0.3build1) ... 153s Selecting previously unselected package libpaper-utils. 153s Preparing to unpack .../33-libpaper-utils_2.2.5-0.3build1_arm64.deb ... 153s Unpacking libpaper-utils (2.2.5-0.3build1) ... 153s Selecting previously unselected package libsharpyuv0:arm64. 153s Preparing to unpack .../34-libsharpyuv0_1.5.0-0.1build1_arm64.deb ... 153s Unpacking libsharpyuv0:arm64 (1.5.0-0.1build1) ... 153s Selecting previously unselected package libsm6:arm64. 153s Preparing to unpack .../35-libsm6_2%3a1.2.6-1_arm64.deb ... 153s Unpacking libsm6:arm64 (2:1.2.6-1) ... 153s Selecting previously unselected package libsmithwaterman0:arm64. 153s Preparing to unpack .../36-libsmithwaterman0_0.0+git20160702.2610e25-12build1_arm64.deb ... 153s Unpacking libsmithwaterman0:arm64 (0.0+git20160702.2610e25-12build1) ... 153s Selecting previously unselected package libtabixpp0t64:arm64. 153s Preparing to unpack .../37-libtabixpp0t64_1.1.2-2.1build2_arm64.deb ... 153s Unpacking libtabixpp0t64:arm64 (1.1.2-2.1build2) ... 153s Selecting previously unselected package libtcl8.6:arm64. 153s Preparing to unpack .../38-libtcl8.6_8.6.17+dfsg-1build1_arm64.deb ... 153s Unpacking libtcl8.6:arm64 (8.6.17+dfsg-1build1) ... 153s Selecting previously unselected package libjbig0:arm64. 153s Preparing to unpack .../39-libjbig0_2.1-6.1ubuntu3_arm64.deb ... 153s Unpacking libjbig0:arm64 (2.1-6.1ubuntu3) ... 153s Selecting previously unselected package libwebp7:arm64. 153s Preparing to unpack .../40-libwebp7_1.5.0-0.1build1_arm64.deb ... 153s Unpacking libwebp7:arm64 (1.5.0-0.1build1) ... 153s Selecting previously unselected package libtiff6:arm64. 154s Preparing to unpack .../41-libtiff6_4.7.0-3ubuntu3_arm64.deb ... 154s Unpacking libtiff6:arm64 (4.7.0-3ubuntu3) ... 154s Selecting previously unselected package libxft2:arm64. 154s Preparing to unpack .../42-libxft2_2.3.6-1build2_arm64.deb ... 154s Unpacking libxft2:arm64 (2.3.6-1build2) ... 154s Selecting previously unselected package libxss1:arm64. 154s Preparing to unpack .../43-libxss1_1%3a1.2.3-1build4_arm64.deb ... 154s Unpacking libxss1:arm64 (1:1.2.3-1build4) ... 154s Selecting previously unselected package libtk8.6:arm64. 154s Preparing to unpack .../44-libtk8.6_8.6.17-1_arm64.deb ... 154s Unpacking libtk8.6:arm64 (8.6.17-1) ... 154s Selecting previously unselected package libwfa2-0:arm64. 154s Preparing to unpack .../45-libwfa2-0_2.3.3-4build1_arm64.deb ... 154s Unpacking libwfa2-0:arm64 (2.3.3-4build1) ... 154s Selecting previously unselected package libvcflib2:arm64. 154s Preparing to unpack .../46-libvcflib2_1.0.12+dfsg-1_arm64.deb ... 154s Unpacking libvcflib2:arm64 (1.0.12+dfsg-1) ... 154s Selecting previously unselected package zip. 154s Preparing to unpack .../47-zip_3.0-15ubuntu2_arm64.deb ... 154s Unpacking zip (3.0-15ubuntu2) ... 154s Selecting previously unselected package unzip. 154s Preparing to unpack .../48-unzip_6.0-29ubuntu1_arm64.deb ... 154s Unpacking unzip (6.0-29ubuntu1) ... 154s Selecting previously unselected package xdg-utils. 154s Preparing to unpack .../49-xdg-utils_1.2.1-2ubuntu2_all.deb ... 154s Unpacking xdg-utils (1.2.1-2ubuntu2) ... 154s Selecting previously unselected package libxt6t64:arm64. 154s Preparing to unpack .../50-libxt6t64_1%3a1.2.1-1.3_arm64.deb ... 154s Unpacking libxt6t64:arm64 (1:1.2.1-1.3) ... 154s Selecting previously unselected package r-base-core. 154s Preparing to unpack .../51-r-base-core_4.5.2-1ubuntu2_arm64.deb ... 154s Unpacking r-base-core (4.5.2-1ubuntu2) ... 154s Selecting previously unselected package r-cran-littler. 154s Preparing to unpack .../52-r-cran-littler_0.3.21-2_arm64.deb ... 154s Unpacking r-cran-littler (0.3.21-2) ... 154s Selecting previously unselected package r-cran-pkgkitten. 154s Preparing to unpack .../53-r-cran-pkgkitten_0.2.4-1_all.deb ... 154s Unpacking r-cran-pkgkitten (0.2.4-1) ... 154s Selecting previously unselected package r-cran-rcpp. 154s Preparing to unpack .../54-r-cran-rcpp_1.1.0-1_arm64.deb ... 154s Unpacking r-cran-rcpp (1.1.0-1) ... 154s Selecting previously unselected package r-cran-plyr. 154s Preparing to unpack .../55-r-cran-plyr_1.8.9-1_arm64.deb ... 154s Unpacking r-cran-plyr (1.8.9-1) ... 154s Selecting previously unselected package r-cran-cli. 154s Preparing to unpack .../56-r-cran-cli_3.6.4-1_arm64.deb ... 154s Unpacking r-cran-cli (3.6.4-1) ... 154s Selecting previously unselected package r-cran-glue. 154s Preparing to unpack .../57-r-cran-glue_1.8.0-1_arm64.deb ... 154s Unpacking r-cran-glue (1.8.0-1) ... 154s Selecting previously unselected package r-cran-rlang. 154s Preparing to unpack .../58-r-cran-rlang_1.1.5-3_arm64.deb ... 154s Unpacking r-cran-rlang (1.1.5-3) ... 154s Selecting previously unselected package r-cran-lifecycle. 155s Preparing to unpack .../59-r-cran-lifecycle_1.0.5+dfsg-1_all.deb ... 155s Unpacking r-cran-lifecycle (1.0.5+dfsg-1) ... 155s Selecting previously unselected package r-cran-gtable. 155s Preparing to unpack .../60-r-cran-gtable_0.3.6+dfsg-1_all.deb ... 155s Unpacking r-cran-gtable (0.3.6+dfsg-1) ... 155s Selecting previously unselected package r-cran-isoband. 155s Preparing to unpack .../61-r-cran-isoband_0.2.7-1_arm64.deb ... 155s Unpacking r-cran-isoband (0.2.7-1) ... 155s Selecting previously unselected package r-cran-mass. 155s Preparing to unpack .../62-r-cran-mass_7.3-65-1_arm64.deb ... 155s Unpacking r-cran-mass (7.3-65-1) ... 155s Selecting previously unselected package r-cran-lattice. 155s Preparing to unpack .../63-r-cran-lattice_0.22-7-1_arm64.deb ... 155s Unpacking r-cran-lattice (0.22-7-1) ... 155s Selecting previously unselected package r-cran-nlme. 155s Preparing to unpack .../64-r-cran-nlme_3.1.168-1_arm64.deb ... 155s Unpacking r-cran-nlme (3.1.168-1) ... 155s Selecting previously unselected package r-cran-matrix. 155s Preparing to unpack .../65-r-cran-matrix_1.7-4-1_arm64.deb ... 155s Unpacking r-cran-matrix (1.7-4-1) ... 155s Selecting previously unselected package r-cran-mgcv. 155s Preparing to unpack .../66-r-cran-mgcv_1.9-4-1_arm64.deb ... 155s Unpacking r-cran-mgcv (1.9-4-1) ... 155s Selecting previously unselected package r-cran-farver. 155s Preparing to unpack .../67-r-cran-farver_2.1.2-1_arm64.deb ... 155s Unpacking r-cran-farver (2.1.2-1) ... 155s Selecting previously unselected package r-cran-labeling. 155s Preparing to unpack .../68-r-cran-labeling_0.4.3-1_all.deb ... 155s Unpacking r-cran-labeling (0.4.3-1) ... 155s Selecting previously unselected package r-cran-r6. 155s Preparing to unpack .../69-r-cran-r6_2.6.1-1_all.deb ... 155s Unpacking r-cran-r6 (2.6.1-1) ... 155s Selecting previously unselected package r-cran-rcolorbrewer. 155s Preparing to unpack .../70-r-cran-rcolorbrewer_1.1-3-1build2_all.deb ... 155s Unpacking r-cran-rcolorbrewer (1.1-3-1build2) ... 155s Selecting previously unselected package r-cran-viridislite. 155s Preparing to unpack .../71-r-cran-viridislite_0.4.2-2_all.deb ... 155s Unpacking r-cran-viridislite (0.4.2-2) ... 155s Selecting previously unselected package r-cran-scales. 155s Preparing to unpack .../72-r-cran-scales_1.4.0-1_all.deb ... 155s Unpacking r-cran-scales (1.4.0-1) ... 155s Selecting previously unselected package r-cran-fansi. 155s Preparing to unpack .../73-r-cran-fansi_1.0.6-2_arm64.deb ... 155s Unpacking r-cran-fansi (1.0.6-2) ... 155s Selecting previously unselected package r-cran-magrittr. 155s Preparing to unpack .../74-r-cran-magrittr_2.0.3-1_arm64.deb ... 155s Unpacking r-cran-magrittr (2.0.3-1) ... 155s Selecting previously unselected package r-cran-utf8. 155s Preparing to unpack .../75-r-cran-utf8_1.2.4-1_arm64.deb ... 155s Unpacking r-cran-utf8 (1.2.4-1) ... 155s Selecting previously unselected package r-cran-vctrs. 155s Preparing to unpack .../76-r-cran-vctrs_0.6.5-1_arm64.deb ... 155s Unpacking r-cran-vctrs (0.6.5-1) ... 155s Selecting previously unselected package r-cran-pillar. 155s Preparing to unpack .../77-r-cran-pillar_1.11.1+dfsg-1_all.deb ... 155s Unpacking r-cran-pillar (1.11.1+dfsg-1) ... 155s Selecting previously unselected package r-cran-pkgconfig. 155s Preparing to unpack .../78-r-cran-pkgconfig_2.0.3-2build2_all.deb ... 155s Unpacking r-cran-pkgconfig (2.0.3-2build2) ... 155s Selecting previously unselected package r-cran-tibble. 155s Preparing to unpack .../79-r-cran-tibble_3.2.1+dfsg-3_arm64.deb ... 155s Unpacking r-cran-tibble (3.2.1+dfsg-3) ... 155s Selecting previously unselected package r-cran-withr. 155s Preparing to unpack .../80-r-cran-withr_3.0.2+dfsg-1_all.deb ... 155s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 155s Selecting previously unselected package r-cran-ggplot2. 155s Preparing to unpack .../81-r-cran-ggplot2_3.5.1+dfsg-1_all.deb ... 155s Unpacking r-cran-ggplot2 (3.5.1+dfsg-1) ... 156s Selecting previously unselected package r-cran-gridbase. 156s Preparing to unpack .../82-r-cran-gridbase_0.4-7-5build2_all.deb ... 156s Unpacking r-cran-gridbase (0.4-7-5build2) ... 156s Selecting previously unselected package libvcflib-tools. 156s Preparing to unpack .../83-libvcflib-tools_1.0.12+dfsg-1_arm64.deb ... 156s Unpacking libvcflib-tools (1.0.12+dfsg-1) ... 156s Setting up libhtscodecs2:arm64 (1.6.1-2build1) ... 156s Setting up libgraphite2-3:arm64 (1.3.14-11ubuntu1) ... 156s Setting up libdisorder0:arm64 (0.0.2+git20130809.8062ee1-4build2) ... 156s Setting up libpixman-1-0:arm64 (0.46.4-1) ... 156s Setting up libwfa2-0:arm64 (2.3.3-4build1) ... 156s Setting up libsharpyuv0:arm64 (1.5.0-0.1build1) ... 156s Setting up liblerc4:arm64 (4.0.0+ds-5ubuntu2) ... 156s Setting up libxrender1:arm64 (1:0.9.12-1) ... 156s Setting up libdatrie1:arm64 (0.2.14-1) ... 156s Setting up libxcb-render0:arm64 (1.17.0-2ubuntu1) ... 156s Setting up unzip (6.0-29ubuntu1) ... 156s Setting up x11-common (1:7.7+24ubuntu1) ... 156s Setting up libsmithwaterman0:arm64 (0.0+git20160702.2610e25-12build1) ... 156s Setting up libdeflate0:arm64 (1.23-2) ... 156s Setting up libxcb-shm0:arm64 (1.17.0-2ubuntu1) ... 156s Setting up libgomp1:arm64 (15.2.0-12ubuntu1) ... 156s Setting up libfastahack0:arm64 (1.0.0+dfsg-11build1) ... 156s Setting up libjbig0:arm64 (2.1-6.1ubuntu3) ... 156s Setting up zip (3.0-15ubuntu2) ... 156s Setting up libblas3:arm64 (3.12.1-7ubuntu1) ... 156s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 156s Setting up fonts-dejavu-mono (2.37-8build1) ... 156s Setting up libtcl8.6:arm64 (8.6.17+dfsg-1build1) ... 156s Setting up fonts-dejavu-core (2.37-8build1) ... 156s Setting up libjpeg-turbo8:arm64 (2.1.5-4ubuntu2) ... 156s Setting up libgfortran5:arm64 (15.2.0-12ubuntu1) ... 156s Setting up libwebp7:arm64 (1.5.0-0.1build1) ... 156s Setting up libhts3t64:arm64 (1.22.1+ds2-1) ... 156s Setting up libharfbuzz0b:arm64 (12.3.2-1) ... 156s Setting up libthai-data (0.1.30-1) ... 156s Setting up libxss1:arm64 (1:1.2.3-1build4) ... 156s Setting up libpaper2:arm64 (2.2.5-0.3build1) ... 156s Setting up xdg-utils (1.2.1-2ubuntu2) ... 156s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 156s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 156s Setting up libice6:arm64 (2:1.1.1-1build1) ... 156s Setting up liblapack3:arm64 (3.12.1-7ubuntu1) ... 156s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 156s Setting up fontconfig-config (2.17.1-3ubuntu1) ... 157s Setting up libpaper-utils (2.2.5-0.3build1) ... 157s Setting up libthai0:arm64 (0.1.30-1) ... 157s Setting up libtiff6:arm64 (4.7.0-3ubuntu3) ... 157s Setting up libtabixpp0t64:arm64 (1.1.2-2.1build2) ... 157s Setting up libfontconfig1:arm64 (2.17.1-3ubuntu1) ... 157s Setting up libsm6:arm64 (2:1.2.6-1) ... 157s Setting up fontconfig (2.17.1-3ubuntu1) ... 159s Regenerating fonts cache... done. 159s Setting up libxft2:arm64 (2.3.6-1build2) ... 159s Setting up libtk8.6:arm64 (8.6.17-1) ... 159s Setting up libpango-1.0-0:arm64 (1.57.0-1) ... 159s Setting up libcairo2:arm64 (1.18.4-3) ... 159s Setting up libvcflib2:arm64 (1.0.12+dfsg-1) ... 159s Setting up libxt6t64:arm64 (1:1.2.1-1.3) ... 159s Setting up libpangoft2-1.0-0:arm64 (1.57.0-1) ... 159s Setting up libpangocairo-1.0-0:arm64 (1.57.0-1) ... 159s Setting up r-base-core (4.5.2-1ubuntu2) ... 159s Creating config file /etc/R/Renviron with new version 159s Setting up r-cran-labeling (0.4.3-1) ... 159s Setting up r-cran-lattice (0.22-7-1) ... 159s Setting up r-cran-nlme (3.1.168-1) ... 159s Setting up r-cran-farver (2.1.2-1) ... 159s Setting up r-cran-viridislite (0.4.2-2) ... 159s Setting up r-cran-r6 (2.6.1-1) ... 159s Setting up r-cran-pkgkitten (0.2.4-1) ... 159s Setting up r-cran-magrittr (2.0.3-1) ... 159s Setting up r-cran-littler (0.3.21-2) ... 159s Setting up r-cran-rcpp (1.1.0-1) ... 159s Setting up r-cran-rlang (1.1.5-3) ... 159s Setting up r-cran-gridbase (0.4-7-5build2) ... 159s Setting up r-cran-withr (3.0.2+dfsg-1) ... 159s Setting up r-cran-fansi (1.0.6-2) ... 159s Setting up r-cran-mass (7.3-65-1) ... 159s Setting up r-cran-glue (1.8.0-1) ... 159s Setting up r-cran-cli (3.6.4-1) ... 159s Setting up r-cran-lifecycle (1.0.5+dfsg-1) ... 159s Setting up r-cran-pkgconfig (2.0.3-2build2) ... 159s Setting up r-cran-utf8 (1.2.4-1) ... 159s Setting up r-cran-plyr (1.8.9-1) ... 159s Setting up r-cran-rcolorbrewer (1.1-3-1build2) ... 159s Setting up r-cran-isoband (0.2.7-1) ... 159s Setting up r-cran-scales (1.4.0-1) ... 159s Setting up r-cran-gtable (0.3.6+dfsg-1) ... 159s Setting up r-cran-matrix (1.7-4-1) ... 159s Setting up r-cran-mgcv (1.9-4-1) ... 159s Setting up r-cran-vctrs (0.6.5-1) ... 159s Setting up r-cran-pillar (1.11.1+dfsg-1) ... 159s Setting up r-cran-tibble (3.2.1+dfsg-3) ... 159s Setting up r-cran-ggplot2 (3.5.1+dfsg-1) ... 159s Setting up libvcflib-tools (1.0.12+dfsg-1) ... 159s Processing triggers for install-info (7.2-5) ... 159s Processing triggers for libc-bin (2.42-2ubuntu5) ... 159s Processing triggers for man-db (2.13.1-1) ... 161s autopkgtest [03:52:39]: test command1: vcffilter -f 'AC > 10' samples/1kg-phaseIII-v5a.20130502.genotypes.chr22-16-16.5mb.vcf.gz | wc -l | grep 1471 161s autopkgtest [03:52:39]: test command1: [----------------------- 168s 1471 168s autopkgtest [03:52:46]: test command1: -----------------------] 169s autopkgtest [03:52:47]: test command1: - - - - - - - - - - results - - - - - - - - - - 169s command1 PASS 169s autopkgtest [03:52:47]: test command2: preparing testbed 169s Reading package lists... 170s Building dependency tree... 170s Reading state information... 170s Solving dependencies... 170s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 171s autopkgtest [03:52:49]: test command2: vcffilter -f 'AC > 100' samples/1kg-phaseIII-v5a.20130502.genotypes.chr22-16-16.5mb.vcf.gz | wc -l | grep 748 171s autopkgtest [03:52:49]: test command2: [----------------------- 177s 748 177s autopkgtest [03:52:55]: test command2: -----------------------] 178s command2 PASS 178s autopkgtest [03:52:56]: test command2: - - - - - - - - - - results - - - - - - - - - - 178s autopkgtest [03:52:56]: @@@@@@@@@@@@@@@@@@@@ summary 178s command1 PASS 178s command2 PASS