4s autopkgtest [03:56:05]: starting date and time: 2026-02-05 03:56:05+0000 4s autopkgtest [03:56:05]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 4s autopkgtest [03:56:05]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.8c4_38_l/out --timeout-copy=6000 --needs-internet=try --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc,src:chiark-tcl --apt-upgrade libssw --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=glibc/2.42-2ubuntu5 chiark-tcl/1.3.7build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-arm64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@sto01-arm64-21.secgroup --name adt-resolute-arm64-libssw-20260205-033935-juju-7f2275-prod-proposed-migration-environment-15-d0f016c3-125e-4361-823e-fd01e39798dc --image adt/ubuntu-resolute-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-autopkgtest-workers-arm64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 23s Creating nova instance adt-resolute-arm64-libssw-20260205-033935-juju-7f2275-prod-proposed-migration-environment-15-d0f016c3-125e-4361-823e-fd01e39798dc from image adt/ubuntu-resolute-arm64-server-20260204.img (UUID f58d981d-b271-4157-b9b1-fd704695563c)... 122s autopkgtest [03:58:03]: testbed dpkg architecture: arm64 124s autopkgtest [03:58:05]: testbed apt version: 3.1.14 134s autopkgtest [03:58:15]: @@@@@@@@@@@@@@@@@@@@ test bed setup 134s autopkgtest [03:58:15]: testbed release detected to be: None 135s autopkgtest [03:58:16]: updating testbed package index (apt update) 137s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 137s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 137s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 137s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 137s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [5260 B] 137s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1719 kB] 140s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [227 kB] 140s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [35.4 kB] 140s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 Packages [265 kB] 140s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 c-n-f Metadata [7328 B] 140s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 Packages [52.9 kB] 141s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 c-n-f Metadata [328 B] 141s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 Packages [1481 kB] 142s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 c-n-f Metadata [40.2 kB] 142s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 Packages [26.0 kB] 142s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 c-n-f Metadata [776 B] 145s Fetched 3984 kB in 5s (807 kB/s) 146s Reading package lists... 148s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 148s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 148s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 148s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 149s Reading package lists... 149s Reading package lists... 150s Building dependency tree... 150s Reading state information... 150s Calculating upgrade... 150s The following packages will be upgraded: 150s libc-bin libc-gconv-modules-extra libc6 locales pollinate python3-linkify-it 150s python3-referencing sed 150s 8 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 150s Need to get 8110 kB of archives. 150s After this operation, 0 B of additional disk space will be used. 150s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 sed arm64 4.9-2build3 [193 kB] 150s Get:2 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 libc-gconv-modules-extra arm64 2.42-2ubuntu5 [1413 kB] 151s Get:3 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 libc6 arm64 2.42-2ubuntu5 [1594 kB] 151s Get:4 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 libc-bin arm64 2.42-2ubuntu5 [599 kB] 151s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 locales all 2.42-2ubuntu5 [4255 kB] 151s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-linkify-it all 2.0.3-1ubuntu3 [19.4 kB] 151s Get:7 http://ftpmaster.internal/ubuntu resolute/main arm64 pollinate all 4.33-4ubuntu5 [14.0 kB] 151s Get:8 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-referencing all 0.36.2-1ubuntu2 [22.2 kB] 152s dpkg-preconfigure: unable to re-open stdin: No such file or directory 152s Fetched 8110 kB in 1s (8356 kB/s) 152s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 89360 files and directories currently installed.) 152s Preparing to unpack .../sed_4.9-2build3_arm64.deb ... 152s Unpacking sed (4.9-2build3) over (4.9-2build2) ... 152s Setting up sed (4.9-2build3) ... 152s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 89360 files and directories currently installed.) 152s Preparing to unpack .../libc-gconv-modules-extra_2.42-2ubuntu5_arm64.deb ... 152s Unpacking libc-gconv-modules-extra:arm64 (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 152s Setting up libc-gconv-modules-extra:arm64 (2.42-2ubuntu5) ... 152s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 89360 files and directories currently installed.) 152s Preparing to unpack .../libc6_2.42-2ubuntu5_arm64.deb ... 153s Unpacking libc6:arm64 (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 153s Setting up libc6:arm64 (2.42-2ubuntu5) ... 153s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 89360 files and directories currently installed.) 153s Preparing to unpack .../libc-bin_2.42-2ubuntu5_arm64.deb ... 153s Unpacking libc-bin (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 153s Setting up libc-bin (2.42-2ubuntu5) ... 153s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 89360 files and directories currently installed.) 153s Preparing to unpack .../locales_2.42-2ubuntu5_all.deb ... 153s Unpacking locales (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 153s Preparing to unpack .../python3-linkify-it_2.0.3-1ubuntu3_all.deb ... 153s Unpacking python3-linkify-it (2.0.3-1ubuntu3) over (2.0.3-1ubuntu2) ... 154s Preparing to unpack .../pollinate_4.33-4ubuntu5_all.deb ... 154s Unpacking pollinate (4.33-4ubuntu5) over (4.33-4ubuntu4) ... 154s Preparing to unpack .../python3-referencing_0.36.2-1ubuntu2_all.deb ... 154s Unpacking python3-referencing (0.36.2-1ubuntu2) over (0.36.2-1ubuntu1) ... 154s Setting up locales (2.42-2ubuntu5) ... 154s Generating locales (this might take a while)... 157s en_US.UTF-8... done 157s Generation complete. 157s Setting up pollinate (4.33-4ubuntu5) ... 167s Setting up python3-linkify-it (2.0.3-1ubuntu3) ... 167s Setting up python3-referencing (0.36.2-1ubuntu2) ... 167s Processing triggers for man-db (2.13.1-1) ... 168s Processing triggers for install-info (7.2-5) ... 169s Processing triggers for systemd (259-1ubuntu3) ... 170s autopkgtest [03:58:51]: upgrading testbed (apt dist-upgrade and autopurge) 172s Reading package lists... 172s Building dependency tree... 172s Reading state information... 172s Calculating upgrade... 173s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 173s Reading package lists... 173s Building dependency tree... 173s Reading state information... 173s Solving dependencies... 174s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 176s autopkgtest [03:58:57]: rebooting testbed after setup commands that affected boot 289s autopkgtest [04:00:50]: testbed running kernel: Linux 6.18.0-9-generic #9-Ubuntu SMP PREEMPT_DYNAMIC Mon Jan 12 16:41:39 UTC 2026 297s autopkgtest [04:00:58]: @@@@@@@@@@@@@@@@@@@@ apt-source libssw 302s Get:1 http://ftpmaster.internal/ubuntu resolute/universe libssw 1.1-15 (dsc) [2509 B] 302s Get:2 http://ftpmaster.internal/ubuntu resolute/universe libssw 1.1-15 (tar) [12.3 MB] 302s Get:3 http://ftpmaster.internal/ubuntu resolute/universe libssw 1.1-15 (diff) [54.3 kB] 302s gpgv: Signature made Tue Jul 23 18:45:44 2024 UTC 302s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 302s gpgv: issuer "emollier@debian.org" 302s gpgv: Can't check signature: No public key 302s dpkg-source: warning: cannot verify inline signature for ./libssw_1.1-15.dsc: no acceptable signature found 302s autopkgtest [04:01:03]: testing package libssw version 1.1-15 307s autopkgtest [04:01:08]: build not needed 311s autopkgtest [04:01:12]: test build-lib: preparing testbed 311s Reading package lists... 312s Building dependency tree... 312s Reading state information... 312s Solving dependencies... 312s The following NEW packages will be installed: 312s build-essential cpp cpp-15 cpp-15-aarch64-linux-gnu cpp-aarch64-linux-gnu 312s g++ g++-15 g++-15-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-15 312s gcc-15-aarch64-linux-gnu gcc-aarch64-linux-gnu libasan8 libc-dev-bin 312s libc6-dev libcc1-0 libcrypt-dev libgcc-15-dev libgomp1 libhwasan0 libisl23 312s libitm1 liblsan0 libmpc3 libssw-dev libssw0 libstdc++-15-dev libtsan2 312s libubsan1 linux-libc-dev rpcsvc-proto zlib1g-dev 312s 0 upgraded, 33 newly installed, 0 to remove and 0 not upgraded. 312s Need to get 69.2 MB of archives. 312s After this operation, 245 MB of additional disk space will be used. 312s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 libc-dev-bin arm64 2.42-2ubuntu5 [22.5 kB] 312s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 linux-libc-dev arm64 6.18.0-9.9 [1834 kB] 313s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 libcrypt-dev arm64 1:4.5.1-1 [123 kB] 313s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 rpcsvc-proto arm64 1.4.3-1build1 [65.6 kB] 313s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 libc6-dev arm64 2.42-2ubuntu5 [1765 kB] 313s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 libisl23 arm64 0.27-1build1 [676 kB] 313s Get:7 http://ftpmaster.internal/ubuntu resolute/main arm64 libmpc3 arm64 1.3.1-2 [55.6 kB] 313s Get:8 http://ftpmaster.internal/ubuntu resolute/main arm64 cpp-15-aarch64-linux-gnu arm64 15.2.0-12ubuntu1 [11.7 MB] 314s Get:9 http://ftpmaster.internal/ubuntu resolute/main arm64 cpp-15 arm64 15.2.0-12ubuntu1 [1030 B] 314s Get:10 http://ftpmaster.internal/ubuntu resolute/main arm64 cpp-aarch64-linux-gnu arm64 4:15.2.0-4ubuntu1 [5736 B] 314s Get:11 http://ftpmaster.internal/ubuntu resolute/main arm64 cpp arm64 4:15.2.0-4ubuntu1 [22.4 kB] 314s Get:12 http://ftpmaster.internal/ubuntu resolute/main arm64 libcc1-0 arm64 15.2.0-12ubuntu1 [49.0 kB] 314s Get:13 http://ftpmaster.internal/ubuntu resolute/main arm64 libgomp1 arm64 15.2.0-12ubuntu1 [147 kB] 314s Get:14 http://ftpmaster.internal/ubuntu resolute/main arm64 libitm1 arm64 15.2.0-12ubuntu1 [27.8 kB] 314s Get:15 http://ftpmaster.internal/ubuntu resolute/main arm64 libasan8 arm64 15.2.0-12ubuntu1 [2920 kB] 314s Get:16 http://ftpmaster.internal/ubuntu resolute/main arm64 liblsan0 arm64 15.2.0-12ubuntu1 [1316 kB] 314s Get:17 http://ftpmaster.internal/ubuntu resolute/main arm64 libtsan2 arm64 15.2.0-12ubuntu1 [2688 kB] 314s Get:18 http://ftpmaster.internal/ubuntu resolute/main arm64 libubsan1 arm64 15.2.0-12ubuntu1 [1175 kB] 314s Get:19 http://ftpmaster.internal/ubuntu resolute/main arm64 libhwasan0 arm64 15.2.0-12ubuntu1 [1638 kB] 314s Get:20 http://ftpmaster.internal/ubuntu resolute/main arm64 libgcc-15-dev arm64 15.2.0-12ubuntu1 [2600 kB] 314s Get:21 http://ftpmaster.internal/ubuntu resolute/main arm64 gcc-15-aarch64-linux-gnu arm64 15.2.0-12ubuntu1 [23.1 MB] 316s Get:22 http://ftpmaster.internal/ubuntu resolute/main arm64 gcc-15 arm64 15.2.0-12ubuntu1 [519 kB] 316s Get:23 http://ftpmaster.internal/ubuntu resolute/main arm64 gcc-aarch64-linux-gnu arm64 4:15.2.0-4ubuntu1 [1206 B] 316s Get:24 http://ftpmaster.internal/ubuntu resolute/main arm64 gcc arm64 4:15.2.0-4ubuntu1 [5016 B] 316s Get:25 http://ftpmaster.internal/ubuntu resolute/main arm64 libstdc++-15-dev arm64 15.2.0-12ubuntu1 [2549 kB] 316s Get:26 http://ftpmaster.internal/ubuntu resolute/main arm64 g++-15-aarch64-linux-gnu arm64 15.2.0-12ubuntu1 [13.2 MB] 317s Get:27 http://ftpmaster.internal/ubuntu resolute/main arm64 g++-15 arm64 15.2.0-12ubuntu1 [25.3 kB] 317s Get:28 http://ftpmaster.internal/ubuntu resolute/main arm64 g++-aarch64-linux-gnu arm64 4:15.2.0-4ubuntu1 [956 B] 317s Get:29 http://ftpmaster.internal/ubuntu resolute/main arm64 g++ arm64 4:15.2.0-4ubuntu1 [1080 B] 317s Get:30 http://ftpmaster.internal/ubuntu resolute/main arm64 build-essential arm64 12.12ubuntu2 [5254 B] 317s Get:31 http://ftpmaster.internal/ubuntu resolute/universe arm64 libssw0 arm64 1.1-15 [21.8 kB] 317s Get:32 http://ftpmaster.internal/ubuntu resolute/universe arm64 libssw-dev arm64 1.1-15 [23.6 kB] 317s Get:33 http://ftpmaster.internal/ubuntu resolute/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu2 [899 kB] 318s Fetched 69.2 MB in 5s (14.1 MB/s) 318s Selecting previously unselected package libc-dev-bin. 318s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 89360 files and directories currently installed.) 318s Preparing to unpack .../00-libc-dev-bin_2.42-2ubuntu5_arm64.deb ... 318s Unpacking libc-dev-bin (2.42-2ubuntu5) ... 318s Selecting previously unselected package linux-libc-dev:arm64. 318s Preparing to unpack .../01-linux-libc-dev_6.18.0-9.9_arm64.deb ... 318s Unpacking linux-libc-dev:arm64 (6.18.0-9.9) ... 318s Selecting previously unselected package libcrypt-dev:arm64. 318s Preparing to unpack .../02-libcrypt-dev_1%3a4.5.1-1_arm64.deb ... 318s Unpacking libcrypt-dev:arm64 (1:4.5.1-1) ... 318s Selecting previously unselected package rpcsvc-proto. 318s Preparing to unpack .../03-rpcsvc-proto_1.4.3-1build1_arm64.deb ... 318s Unpacking rpcsvc-proto (1.4.3-1build1) ... 318s Selecting previously unselected package libc6-dev:arm64. 318s Preparing to unpack .../04-libc6-dev_2.42-2ubuntu5_arm64.deb ... 318s Unpacking libc6-dev:arm64 (2.42-2ubuntu5) ... 318s Selecting previously unselected package libisl23:arm64. 318s Preparing to unpack .../05-libisl23_0.27-1build1_arm64.deb ... 318s Unpacking libisl23:arm64 (0.27-1build1) ... 318s Selecting previously unselected package libmpc3:arm64. 318s Preparing to unpack .../06-libmpc3_1.3.1-2_arm64.deb ... 318s Unpacking libmpc3:arm64 (1.3.1-2) ... 318s Selecting previously unselected package cpp-15-aarch64-linux-gnu. 318s Preparing to unpack .../07-cpp-15-aarch64-linux-gnu_15.2.0-12ubuntu1_arm64.deb ... 318s Unpacking cpp-15-aarch64-linux-gnu (15.2.0-12ubuntu1) ... 319s Selecting previously unselected package cpp-15. 319s Preparing to unpack .../08-cpp-15_15.2.0-12ubuntu1_arm64.deb ... 319s Unpacking cpp-15 (15.2.0-12ubuntu1) ... 319s Selecting previously unselected package cpp-aarch64-linux-gnu. 319s Preparing to unpack .../09-cpp-aarch64-linux-gnu_4%3a15.2.0-4ubuntu1_arm64.deb ... 319s Unpacking cpp-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 319s Selecting previously unselected package cpp. 319s Preparing to unpack .../10-cpp_4%3a15.2.0-4ubuntu1_arm64.deb ... 319s Unpacking cpp (4:15.2.0-4ubuntu1) ... 319s Selecting previously unselected package libcc1-0:arm64. 319s Preparing to unpack .../11-libcc1-0_15.2.0-12ubuntu1_arm64.deb ... 319s Unpacking libcc1-0:arm64 (15.2.0-12ubuntu1) ... 319s Selecting previously unselected package libgomp1:arm64. 319s Preparing to unpack .../12-libgomp1_15.2.0-12ubuntu1_arm64.deb ... 319s Unpacking libgomp1:arm64 (15.2.0-12ubuntu1) ... 319s Selecting previously unselected package libitm1:arm64. 319s Preparing to unpack .../13-libitm1_15.2.0-12ubuntu1_arm64.deb ... 319s Unpacking libitm1:arm64 (15.2.0-12ubuntu1) ... 319s Selecting previously unselected package libasan8:arm64. 319s Preparing to unpack .../14-libasan8_15.2.0-12ubuntu1_arm64.deb ... 319s Unpacking libasan8:arm64 (15.2.0-12ubuntu1) ... 319s Selecting previously unselected package liblsan0:arm64. 319s Preparing to unpack .../15-liblsan0_15.2.0-12ubuntu1_arm64.deb ... 319s Unpacking liblsan0:arm64 (15.2.0-12ubuntu1) ... 319s Selecting previously unselected package libtsan2:arm64. 319s Preparing to unpack .../16-libtsan2_15.2.0-12ubuntu1_arm64.deb ... 319s Unpacking libtsan2:arm64 (15.2.0-12ubuntu1) ... 319s Selecting previously unselected package libubsan1:arm64. 319s Preparing to unpack .../17-libubsan1_15.2.0-12ubuntu1_arm64.deb ... 319s Unpacking libubsan1:arm64 (15.2.0-12ubuntu1) ... 319s Selecting previously unselected package libhwasan0:arm64. 319s Preparing to unpack .../18-libhwasan0_15.2.0-12ubuntu1_arm64.deb ... 319s Unpacking libhwasan0:arm64 (15.2.0-12ubuntu1) ... 319s Selecting previously unselected package libgcc-15-dev:arm64. 319s Preparing to unpack .../19-libgcc-15-dev_15.2.0-12ubuntu1_arm64.deb ... 319s Unpacking libgcc-15-dev:arm64 (15.2.0-12ubuntu1) ... 319s Selecting previously unselected package gcc-15-aarch64-linux-gnu. 319s Preparing to unpack .../20-gcc-15-aarch64-linux-gnu_15.2.0-12ubuntu1_arm64.deb ... 319s Unpacking gcc-15-aarch64-linux-gnu (15.2.0-12ubuntu1) ... 320s Selecting previously unselected package gcc-15. 320s Preparing to unpack .../21-gcc-15_15.2.0-12ubuntu1_arm64.deb ... 320s Unpacking gcc-15 (15.2.0-12ubuntu1) ... 320s Selecting previously unselected package gcc-aarch64-linux-gnu. 320s Preparing to unpack .../22-gcc-aarch64-linux-gnu_4%3a15.2.0-4ubuntu1_arm64.deb ... 320s Unpacking gcc-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 320s Selecting previously unselected package gcc. 320s Preparing to unpack .../23-gcc_4%3a15.2.0-4ubuntu1_arm64.deb ... 320s Unpacking gcc (4:15.2.0-4ubuntu1) ... 320s Selecting previously unselected package libstdc++-15-dev:arm64. 320s Preparing to unpack .../24-libstdc++-15-dev_15.2.0-12ubuntu1_arm64.deb ... 320s Unpacking libstdc++-15-dev:arm64 (15.2.0-12ubuntu1) ... 320s Selecting previously unselected package g++-15-aarch64-linux-gnu. 320s Preparing to unpack .../25-g++-15-aarch64-linux-gnu_15.2.0-12ubuntu1_arm64.deb ... 320s Unpacking g++-15-aarch64-linux-gnu (15.2.0-12ubuntu1) ... 320s Selecting previously unselected package g++-15. 320s Preparing to unpack .../26-g++-15_15.2.0-12ubuntu1_arm64.deb ... 320s Unpacking g++-15 (15.2.0-12ubuntu1) ... 320s Selecting previously unselected package g++-aarch64-linux-gnu. 320s Preparing to unpack .../27-g++-aarch64-linux-gnu_4%3a15.2.0-4ubuntu1_arm64.deb ... 320s Unpacking g++-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 320s Selecting previously unselected package g++. 320s Preparing to unpack .../28-g++_4%3a15.2.0-4ubuntu1_arm64.deb ... 320s Unpacking g++ (4:15.2.0-4ubuntu1) ... 320s Selecting previously unselected package build-essential. 320s Preparing to unpack .../29-build-essential_12.12ubuntu2_arm64.deb ... 320s Unpacking build-essential (12.12ubuntu2) ... 320s Selecting previously unselected package libssw0:arm64. 320s Preparing to unpack .../30-libssw0_1.1-15_arm64.deb ... 320s Unpacking libssw0:arm64 (1.1-15) ... 320s Selecting previously unselected package libssw-dev:arm64. 320s Preparing to unpack .../31-libssw-dev_1.1-15_arm64.deb ... 320s Unpacking libssw-dev:arm64 (1.1-15) ... 320s Selecting previously unselected package zlib1g-dev:arm64. 320s Preparing to unpack .../32-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu2_arm64.deb ... 320s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu2) ... 320s Setting up linux-libc-dev:arm64 (6.18.0-9.9) ... 320s Setting up libgomp1:arm64 (15.2.0-12ubuntu1) ... 320s Setting up rpcsvc-proto (1.4.3-1build1) ... 320s Setting up libmpc3:arm64 (1.3.1-2) ... 320s Setting up libubsan1:arm64 (15.2.0-12ubuntu1) ... 320s Setting up libhwasan0:arm64 (15.2.0-12ubuntu1) ... 320s Setting up libcrypt-dev:arm64 (1:4.5.1-1) ... 320s Setting up libasan8:arm64 (15.2.0-12ubuntu1) ... 320s Setting up libtsan2:arm64 (15.2.0-12ubuntu1) ... 320s Setting up libisl23:arm64 (0.27-1build1) ... 320s Setting up libc-dev-bin (2.42-2ubuntu5) ... 320s Setting up libssw0:arm64 (1.1-15) ... 320s Setting up libcc1-0:arm64 (15.2.0-12ubuntu1) ... 320s Setting up liblsan0:arm64 (15.2.0-12ubuntu1) ... 320s Setting up libitm1:arm64 (15.2.0-12ubuntu1) ... 320s Setting up cpp-15-aarch64-linux-gnu (15.2.0-12ubuntu1) ... 320s Setting up libgcc-15-dev:arm64 (15.2.0-12ubuntu1) ... 320s Setting up libssw-dev:arm64 (1.1-15) ... 320s Setting up cpp-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 320s Setting up cpp-15 (15.2.0-12ubuntu1) ... 320s Setting up cpp (4:15.2.0-4ubuntu1) ... 320s Setting up libc6-dev:arm64 (2.42-2ubuntu5) ... 320s Setting up gcc-15-aarch64-linux-gnu (15.2.0-12ubuntu1) ... 320s Setting up gcc-15 (15.2.0-12ubuntu1) ... 320s Setting up libstdc++-15-dev:arm64 (15.2.0-12ubuntu1) ... 320s Setting up g++-15-aarch64-linux-gnu (15.2.0-12ubuntu1) ... 321s Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu2) ... 321s Setting up g++-15 (15.2.0-12ubuntu1) ... 321s Setting up gcc-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 321s Setting up gcc (4:15.2.0-4ubuntu1) ... 321s Setting up g++-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 321s Setting up g++ (4:15.2.0-4ubuntu1) ... 321s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 321s Setting up build-essential (12.12ubuntu2) ... 321s Processing triggers for man-db (2.13.1-1) ... 322s Processing triggers for libc-bin (2.42-2ubuntu5) ... 325s autopkgtest [04:01:26]: test build-lib: [----------------------- 326s optimal_alignment_score: 21 sub-optimal_alignment_score: 8 target_begin: 9 target_end: 22 query_begin: 1 query_end: 15 326s 326s Target: 9 CTGACCCGG-AAATC 22 326s ||||*||||*||||| 326s Query: 1 CTGAGCCGGTAAATC 15 326s 326s ===== SSW result ===== 326s Best Smith-Waterman score: 21 326s Next-best Smith-Waterman score: 8 326s Reference start: 8 326s Reference end: 21 326s Query start: 0 326s Query end: 14 326s Next-best reference end: 4 326s Number of mismatches: 2 326s Cigar: 4=1X4=1I5= 326s ====================== 327s autopkgtest [04:01:28]: test build-lib: -----------------------] 329s autopkgtest [04:01:30]: test build-lib: - - - - - - - - - - results - - - - - - - - - - 329s build-lib PASS 330s autopkgtest [04:01:31]: test build-lib-java: preparing testbed 354s Creating nova instance adt-resolute-arm64-libssw-20260205-033935-juju-7f2275-prod-proposed-migration-environment-15-d0f016c3-125e-4361-823e-fd01e39798dc from image adt/ubuntu-resolute-arm64-server-20260204.img (UUID f58d981d-b271-4157-b9b1-fd704695563c)... 441s autopkgtest [04:03:22]: testbed dpkg architecture: arm64 441s autopkgtest [04:03:22]: testbed apt version: 3.1.14 442s autopkgtest [04:03:23]: @@@@@@@@@@@@@@@@@@@@ test bed setup 444s autopkgtest [04:03:25]: testbed release detected to be: resolute 452s autopkgtest [04:03:33]: updating testbed package index (apt update) 452s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 452s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 452s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 452s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 452s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1719 kB] 453s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [227 kB] 453s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [5260 B] 453s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [35.4 kB] 453s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 Packages [265 kB] 453s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 c-n-f Metadata [7328 B] 453s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 Packages [52.9 kB] 453s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 c-n-f Metadata [328 B] 453s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 Packages [1481 kB] 453s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 c-n-f Metadata [40.2 kB] 453s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 Packages [26.0 kB] 453s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 c-n-f Metadata [776 B] 457s Fetched 3984 kB in 1s (3981 kB/s) 457s Reading package lists... 460s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 460s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 460s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 460s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 461s Reading package lists... 461s Reading package lists... 461s Building dependency tree... 461s Reading state information... 461s Calculating upgrade... 462s The following packages will be upgraded: 462s libc-bin libc-gconv-modules-extra libc6 locales pollinate python3-linkify-it 462s python3-referencing sed 462s 8 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 462s Need to get 8110 kB of archives. 462s After this operation, 0 B of additional disk space will be used. 462s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 sed arm64 4.9-2build3 [193 kB] 462s Get:2 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 libc-gconv-modules-extra arm64 2.42-2ubuntu5 [1413 kB] 463s Get:3 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 libc6 arm64 2.42-2ubuntu5 [1594 kB] 463s Get:4 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 libc-bin arm64 2.42-2ubuntu5 [599 kB] 463s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 locales all 2.42-2ubuntu5 [4255 kB] 463s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-linkify-it all 2.0.3-1ubuntu3 [19.4 kB] 463s Get:7 http://ftpmaster.internal/ubuntu resolute/main arm64 pollinate all 4.33-4ubuntu5 [14.0 kB] 463s Get:8 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-referencing all 0.36.2-1ubuntu2 [22.2 kB] 464s dpkg-preconfigure: unable to re-open stdin: No such file or directory 464s Fetched 8110 kB in 2s (5084 kB/s) 464s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 89360 files and directories currently installed.) 464s Preparing to unpack .../sed_4.9-2build3_arm64.deb ... 464s Unpacking sed (4.9-2build3) over (4.9-2build2) ... 464s Setting up sed (4.9-2build3) ... 464s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 89360 files and directories currently installed.) 464s Preparing to unpack .../libc-gconv-modules-extra_2.42-2ubuntu5_arm64.deb ... 464s Unpacking libc-gconv-modules-extra:arm64 (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 464s Setting up libc-gconv-modules-extra:arm64 (2.42-2ubuntu5) ... 464s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 89360 files and directories currently installed.) 464s Preparing to unpack .../libc6_2.42-2ubuntu5_arm64.deb ... 464s Unpacking libc6:arm64 (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 465s Setting up libc6:arm64 (2.42-2ubuntu5) ... 465s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 89360 files and directories currently installed.) 465s Preparing to unpack .../libc-bin_2.42-2ubuntu5_arm64.deb ... 465s Unpacking libc-bin (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 465s Setting up libc-bin (2.42-2ubuntu5) ... 465s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 89360 files and directories currently installed.) 465s Preparing to unpack .../locales_2.42-2ubuntu5_all.deb ... 465s Unpacking locales (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 465s Preparing to unpack .../python3-linkify-it_2.0.3-1ubuntu3_all.deb ... 465s Unpacking python3-linkify-it (2.0.3-1ubuntu3) over (2.0.3-1ubuntu2) ... 465s Preparing to unpack .../pollinate_4.33-4ubuntu5_all.deb ... 465s Unpacking pollinate (4.33-4ubuntu5) over (4.33-4ubuntu4) ... 465s Preparing to unpack .../python3-referencing_0.36.2-1ubuntu2_all.deb ... 466s Unpacking python3-referencing (0.36.2-1ubuntu2) over (0.36.2-1ubuntu1) ... 466s Setting up locales (2.42-2ubuntu5) ... 466s Generating locales (this might take a while)... 468s en_US.UTF-8... done 468s Generation complete. 468s Setting up pollinate (4.33-4ubuntu5) ... 479s Setting up python3-linkify-it (2.0.3-1ubuntu3) ... 479s Setting up python3-referencing (0.36.2-1ubuntu2) ... 479s Processing triggers for man-db (2.13.1-1) ... 481s Processing triggers for install-info (7.2-5) ... 481s autopkgtest [04:04:02]: upgrading testbed (apt dist-upgrade and autopurge) 481s Processing triggers for systemd (259-1ubuntu3) ... 481s Reading package lists... 481s Building dependency tree... 481s Reading state information... 481s Calculating upgrade... 482s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 483s Reading package lists... 483s Building dependency tree... 483s Reading state information... 483s Solving dependencies... 484s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 484s autopkgtest [04:04:05]: rebooting testbed after setup commands that affected boot 535s Reading package lists... 536s Building dependency tree... 536s Reading state information... 536s Solving dependencies... 536s The following NEW packages will be installed: 536s ca-certificates-java default-jdk-headless default-jre-headless java-common 536s libjpeg-turbo8 libjpeg8 liblcms2-2 libpcsclite1 libssw-java 536s openjdk-21-jdk-headless openjdk-21-jre-headless 536s 0 upgraded, 11 newly installed, 0 to remove and 0 not upgraded. 536s Need to get 128 MB of archives. 536s After this operation, 302 MB of additional disk space will be used. 536s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 ca-certificates-java all 20240118build1 [11.7 kB] 536s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 java-common all 0.76build1 [6956 B] 536s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 liblcms2-2 arm64 2.17-1 [170 kB] 536s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg-turbo8 arm64 2.1.5-4ubuntu2 [165 kB] 536s Get:5 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 536s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 libpcsclite1 arm64 2.4.1-1 [24.7 kB] 537s Get:7 http://ftpmaster.internal/ubuntu resolute/main arm64 openjdk-21-jre-headless arm64 21.0.10+7-1 [45.9 MB] 539s Get:8 http://ftpmaster.internal/ubuntu resolute/main arm64 default-jre-headless arm64 2:1.21-76build1 [3268 B] 539s Get:9 http://ftpmaster.internal/ubuntu resolute/main arm64 openjdk-21-jdk-headless arm64 21.0.10+7-1 [82.2 MB] 545s Get:10 http://ftpmaster.internal/ubuntu resolute/main arm64 default-jdk-headless arm64 2:1.21-76build1 [964 B] 545s Get:11 http://ftpmaster.internal/ubuntu resolute/universe arm64 libssw-java arm64 1.1-15 [18.6 kB] 547s Fetched 128 MB in 9s (14.3 MB/s) 547s Selecting previously unselected package ca-certificates-java. 547s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 89360 files and directories currently installed.) 547s Preparing to unpack .../00-ca-certificates-java_20240118build1_all.deb ... 547s Unpacking ca-certificates-java (20240118build1) ... 547s Selecting previously unselected package java-common. 547s Preparing to unpack .../01-java-common_0.76build1_all.deb ... 547s Unpacking java-common (0.76build1) ... 547s Selecting previously unselected package liblcms2-2:arm64. 547s Preparing to unpack .../02-liblcms2-2_2.17-1_arm64.deb ... 547s Unpacking liblcms2-2:arm64 (2.17-1) ... 547s Selecting previously unselected package libjpeg-turbo8:arm64. 547s Preparing to unpack .../03-libjpeg-turbo8_2.1.5-4ubuntu2_arm64.deb ... 547s Unpacking libjpeg-turbo8:arm64 (2.1.5-4ubuntu2) ... 547s Selecting previously unselected package libjpeg8:arm64. 547s Preparing to unpack .../04-libjpeg8_8c-2ubuntu11_arm64.deb ... 547s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 547s Selecting previously unselected package libpcsclite1:arm64. 547s Preparing to unpack .../05-libpcsclite1_2.4.1-1_arm64.deb ... 547s Unpacking libpcsclite1:arm64 (2.4.1-1) ... 547s Selecting previously unselected package openjdk-21-jre-headless:arm64. 547s Preparing to unpack .../06-openjdk-21-jre-headless_21.0.10+7-1_arm64.deb ... 547s Unpacking openjdk-21-jre-headless:arm64 (21.0.10+7-1) ... 547s Selecting previously unselected package default-jre-headless. 547s Preparing to unpack .../07-default-jre-headless_2%3a1.21-76build1_arm64.deb ... 547s Unpacking default-jre-headless (2:1.21-76build1) ... 547s Selecting previously unselected package openjdk-21-jdk-headless:arm64. 547s Preparing to unpack .../08-openjdk-21-jdk-headless_21.0.10+7-1_arm64.deb ... 547s Unpacking openjdk-21-jdk-headless:arm64 (21.0.10+7-1) ... 547s Selecting previously unselected package default-jdk-headless. 547s Preparing to unpack .../09-default-jdk-headless_2%3a1.21-76build1_arm64.deb ... 547s Unpacking default-jdk-headless (2:1.21-76build1) ... 547s Selecting previously unselected package libssw-java. 547s Preparing to unpack .../10-libssw-java_1.1-15_arm64.deb ... 547s Unpacking libssw-java (1.1-15) ... 547s Setting up liblcms2-2:arm64 (2.17-1) ... 547s Setting up java-common (0.76build1) ... 547s Setting up libssw-java (1.1-15) ... 547s Setting up libpcsclite1:arm64 (2.4.1-1) ... 547s Setting up libjpeg-turbo8:arm64 (2.1.5-4ubuntu2) ... 547s Setting up ca-certificates-java (20240118build1) ... 547s No JRE found. Skipping Java certificates setup. 547s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 547s Setting up openjdk-21-jre-headless:arm64 (21.0.10+7-1) ... 547s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/java to provide /usr/bin/java (java) in auto mode 547s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode 547s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode 547s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode 547s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode 547s Processing triggers for libc-bin (2.42-2ubuntu5) ... 547s Processing triggers for man-db (2.13.1-1) ... 548s Processing triggers for ca-certificates-java (20240118build1) ... 549s Adding debian:ACCVRAIZ1.pem 549s Adding debian:AC_RAIZ_FNMT-RCM.pem 549s Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem 549s Adding debian:ANF_Secure_Server_Root_CA.pem 549s Adding debian:Actalis_Authentication_Root_CA.pem 549s Adding debian:AffirmTrust_Commercial.pem 549s Adding debian:AffirmTrust_Networking.pem 549s Adding debian:AffirmTrust_Premium.pem 549s Adding debian:AffirmTrust_Premium_ECC.pem 549s Adding debian:Amazon_Root_CA_1.pem 549s Adding debian:Amazon_Root_CA_2.pem 549s Adding debian:Amazon_Root_CA_3.pem 549s Adding debian:Amazon_Root_CA_4.pem 549s Adding debian:Atos_TrustedRoot_2011.pem 549s Adding debian:Atos_TrustedRoot_Root_CA_ECC_TLS_2021.pem 549s Adding debian:Atos_TrustedRoot_Root_CA_RSA_TLS_2021.pem 549s Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem 549s Adding debian:BJCA_Global_Root_CA1.pem 549s Adding debian:BJCA_Global_Root_CA2.pem 549s Adding debian:Baltimore_CyberTrust_Root.pem 549s Adding debian:Buypass_Class_2_Root_CA.pem 549s Adding debian:Buypass_Class_3_Root_CA.pem 549s Adding debian:CA_Disig_Root_R2.pem 549s Adding debian:CFCA_EV_ROOT.pem 549s Adding debian:COMODO_Certification_Authority.pem 549s Adding debian:COMODO_ECC_Certification_Authority.pem 549s Adding debian:COMODO_RSA_Certification_Authority.pem 549s Adding debian:Certainly_Root_E1.pem 549s Adding debian:Certainly_Root_R1.pem 549s Adding debian:Certigna.pem 549s Adding debian:Certigna_Root_CA.pem 549s Adding debian:Certum_EC-384_CA.pem 549s Adding debian:Certum_Trusted_Network_CA.pem 549s Adding debian:Certum_Trusted_Network_CA_2.pem 549s Adding debian:Certum_Trusted_Root_CA.pem 549s Adding debian:CommScope_Public_Trust_ECC_Root-01.pem 549s Adding debian:CommScope_Public_Trust_ECC_Root-02.pem 549s Adding debian:CommScope_Public_Trust_RSA_Root-01.pem 549s Adding debian:CommScope_Public_Trust_RSA_Root-02.pem 549s Adding debian:Comodo_AAA_Services_root.pem 549s Adding debian:D-TRUST_BR_Root_CA_1_2020.pem 549s Adding debian:D-TRUST_BR_Root_CA_2_2023.pem 549s Adding debian:D-TRUST_EV_Root_CA_1_2020.pem 549s Adding debian:D-TRUST_EV_Root_CA_2_2023.pem 549s Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem 549s Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem 549s Adding debian:DigiCert_Assured_ID_Root_CA.pem 549s Adding debian:DigiCert_Assured_ID_Root_G2.pem 549s Adding debian:DigiCert_Assured_ID_Root_G3.pem 549s Adding debian:DigiCert_Global_Root_CA.pem 549s Adding debian:DigiCert_Global_Root_G2.pem 549s Adding debian:DigiCert_Global_Root_G3.pem 549s Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem 549s Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem 549s Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem 549s Adding debian:DigiCert_Trusted_Root_G4.pem 549s Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem 549s Adding debian:Entrust_Root_Certification_Authority.pem 549s Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem 549s Adding debian:Entrust_Root_Certification_Authority_-_G2.pem 549s Adding debian:FIRMAPROFESIONAL_CA_ROOT-A_WEB.pem 549s Adding debian:GDCA_TrustAUTH_R5_ROOT.pem 549s Adding debian:GLOBALTRUST_2020.pem 549s Adding debian:GTS_Root_R1.pem 549s Adding debian:GTS_Root_R2.pem 549s Adding debian:GTS_Root_R3.pem 549s Adding debian:GTS_Root_R4.pem 549s Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem 549s Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem 549s Adding debian:GlobalSign_Root_CA.pem 549s Adding debian:GlobalSign_Root_CA_-_R3.pem 549s Adding debian:GlobalSign_Root_CA_-_R6.pem 549s Adding debian:GlobalSign_Root_E46.pem 549s Adding debian:GlobalSign_Root_R46.pem 549s Adding debian:Go_Daddy_Class_2_CA.pem 549s Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem 549s Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem 549s Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem 549s Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem 549s Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem 549s Adding debian:HiPKI_Root_CA_-_G1.pem 549s Adding debian:Hongkong_Post_Root_CA_3.pem 549s Adding debian:ISRG_Root_X1.pem 549s Adding debian:ISRG_Root_X2.pem 549s Adding debian:IdenTrust_Commercial_Root_CA_1.pem 549s Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem 549s Adding debian:Izenpe.com.pem 549s Adding debian:Microsec_e-Szigno_Root_CA_2009.pem 549s Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem 549s Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem 549s Adding debian:NAVER_Global_Root_Certification_Authority.pem 549s Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem 549s Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem 549s Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem 549s Adding debian:QuoVadis_Root_CA_1_G3.pem 549s Adding debian:QuoVadis_Root_CA_2.pem 549s Adding debian:QuoVadis_Root_CA_2_G3.pem 549s Adding debian:QuoVadis_Root_CA_3.pem 549s Adding debian:QuoVadis_Root_CA_3_G3.pem 549s Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem 549s Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem 549s Adding debian:SSL.com_Root_Certification_Authority_ECC.pem 549s Adding debian:SSL.com_Root_Certification_Authority_RSA.pem 549s Adding debian:SSL.com_TLS_ECC_Root_CA_2022.pem 549s Adding debian:SSL.com_TLS_RSA_Root_CA_2022.pem 549s Adding debian:SZAFIR_ROOT_CA2.pem 549s Adding debian:Sectigo_Public_Server_Authentication_Root_E46.pem 549s Adding debian:Sectigo_Public_Server_Authentication_Root_R46.pem 549s Adding debian:SecureSign_Root_CA12.pem 549s Adding debian:SecureSign_Root_CA14.pem 549s Adding debian:SecureSign_Root_CA15.pem 549s Adding debian:SecureTrust_CA.pem 549s Adding debian:Secure_Global_CA.pem 549s Adding debian:Security_Communication_ECC_RootCA1.pem 549s Adding debian:Security_Communication_RootCA2.pem 549s Adding debian:Starfield_Class_2_CA.pem 549s Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem 549s Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem 549s Adding debian:SwissSign_Gold_CA_-_G2.pem 549s Adding debian:T-TeleSec_GlobalRoot_Class_2.pem 549s Adding debian:T-TeleSec_GlobalRoot_Class_3.pem 549s Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem 549s Adding debian:TWCA_CYBER_Root_CA.pem 549s Adding debian:TWCA_Global_Root_CA.pem 549s Adding debian:TWCA_Root_Certification_Authority.pem 549s Adding debian:Telekom_Security_TLS_ECC_Root_2020.pem 549s Adding debian:Telekom_Security_TLS_RSA_Root_2023.pem 549s Adding debian:TeliaSonera_Root_CA_v1.pem 549s Adding debian:Telia_Root_CA_v2.pem 549s Adding debian:TrustAsia_Global_Root_CA_G3.pem 549s Adding debian:TrustAsia_Global_Root_CA_G4.pem 549s Adding debian:Trustwave_Global_Certification_Authority.pem 549s Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem 549s Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem 549s Adding debian:TunTrust_Root_CA.pem 549s Adding debian:UCA_Extended_Validation_Root.pem 549s Adding debian:UCA_Global_G2_Root.pem 549s Adding debian:USERTrust_ECC_Certification_Authority.pem 549s Adding debian:USERTrust_RSA_Certification_Authority.pem 549s Adding debian:XRamp_Global_CA_Root.pem 549s Adding debian:certSIGN_ROOT_CA.pem 549s Adding debian:certSIGN_Root_CA_G2.pem 549s Adding debian:e-Szigno_Root_CA_2017.pem 549s Adding debian:ePKI_Root_Certification_Authority.pem 549s Adding debian:emSign_ECC_Root_CA_-_C3.pem 549s Adding debian:emSign_ECC_Root_CA_-_G3.pem 549s Adding debian:emSign_Root_CA_-_C1.pem 549s Adding debian:emSign_Root_CA_-_G1.pem 549s Adding debian:vTrus_ECC_Root_CA.pem 549s Adding debian:vTrus_Root_CA.pem 549s done. 549s Setting up openjdk-21-jdk-headless:arm64 (21.0.10+7-1) ... 549s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jar to provide /usr/bin/jar (jar) in auto mode 549s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode 549s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/javac to provide /usr/bin/javac (javac) in auto mode 549s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode 549s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/javap to provide /usr/bin/javap (javap) in auto mode 549s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jcmd to provide /usr/bin/jcmd (jcmd) in auto mode 549s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode 549s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jdeprscan to provide /usr/bin/jdeprscan (jdeprscan) in auto mode 549s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jdeps to provide /usr/bin/jdeps (jdeps) in auto mode 549s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jfr to provide /usr/bin/jfr (jfr) in auto mode 549s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jimage to provide /usr/bin/jimage (jimage) in auto mode 549s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode 549s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jlink to provide /usr/bin/jlink (jlink) in auto mode 549s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode 549s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jmod to provide /usr/bin/jmod (jmod) in auto mode 549s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jps to provide /usr/bin/jps (jps) in auto mode 549s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode 549s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jshell to provide /usr/bin/jshell (jshell) in auto mode 549s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode 549s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode 549s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode 549s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jwebserver to provide /usr/bin/jwebserver (jwebserver) in auto mode 549s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode 549s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jhsdb to provide /usr/bin/jhsdb (jhsdb) in auto mode 549s Setting up default-jre-headless (2:1.21-76build1) ... 549s Setting up default-jdk-headless (2:1.21-76build1) ... 561s autopkgtest [04:05:22]: test build-lib-java: [----------------------- 566s Aligning nucleotides 566s score1=21 score2=8 ref_begin1=8 ref_end1=21 read_begin1=0 read_end1=14 ref_end2=4 cigar=9M1I5M 566s autopkgtest [04:05:27]: test build-lib-java: -----------------------] 568s autopkgtest [04:05:29]: test build-lib-java: - - - - - - - - - - results - - - - - - - - - - 568s build-lib-java PASS 569s autopkgtest [04:05:30]: test run-example: preparing testbed 608s Creating nova instance adt-resolute-arm64-libssw-20260205-033935-juju-7f2275-prod-proposed-migration-environment-15-d0f016c3-125e-4361-823e-fd01e39798dc from image adt/ubuntu-resolute-arm64-server-20260204.img (UUID f58d981d-b271-4157-b9b1-fd704695563c)... 692s autopkgtest [04:07:33]: testbed dpkg architecture: arm64 693s autopkgtest [04:07:34]: testbed apt version: 3.1.14 693s autopkgtest [04:07:34]: @@@@@@@@@@@@@@@@@@@@ test bed setup 693s autopkgtest [04:07:34]: testbed release detected to be: resolute 694s autopkgtest [04:07:35]: updating testbed package index (apt update) 694s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 694s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 694s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 694s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 694s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [227 kB] 694s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [5260 B] 694s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [35.4 kB] 695s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1719 kB] 695s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 Packages [265 kB] 695s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 c-n-f Metadata [7328 B] 695s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 Packages [52.9 kB] 695s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 c-n-f Metadata [328 B] 695s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 Packages [1481 kB] 695s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 c-n-f Metadata [40.2 kB] 695s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 Packages [26.0 kB] 695s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 c-n-f Metadata [776 B] 699s Fetched 3984 kB in 1s (4162 kB/s) 699s Reading package lists... 700s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 700s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 700s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 700s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 701s Reading package lists... 701s Reading package lists... 702s Building dependency tree... 702s Reading state information... 702s Calculating upgrade... 702s The following packages will be upgraded: 702s libc-bin libc-gconv-modules-extra libc6 locales pollinate python3-linkify-it 702s python3-referencing sed 703s 8 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 703s Need to get 8110 kB of archives. 703s After this operation, 0 B of additional disk space will be used. 703s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 sed arm64 4.9-2build3 [193 kB] 703s Get:2 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 libc-gconv-modules-extra arm64 2.42-2ubuntu5 [1413 kB] 704s Get:3 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 libc6 arm64 2.42-2ubuntu5 [1594 kB] 706s Get:4 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 libc-bin arm64 2.42-2ubuntu5 [599 kB] 706s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 locales all 2.42-2ubuntu5 [4255 kB] 708s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-linkify-it all 2.0.3-1ubuntu3 [19.4 kB] 708s Get:7 http://ftpmaster.internal/ubuntu resolute/main arm64 pollinate all 4.33-4ubuntu5 [14.0 kB] 708s Get:8 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-referencing all 0.36.2-1ubuntu2 [22.2 kB] 709s dpkg-preconfigure: unable to re-open stdin: No such file or directory 709s Fetched 8110 kB in 6s (1393 kB/s) 709s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 89360 files and directories currently installed.) 709s Preparing to unpack .../sed_4.9-2build3_arm64.deb ... 709s Unpacking sed (4.9-2build3) over (4.9-2build2) ... 709s Setting up sed (4.9-2build3) ... 709s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 89360 files and directories currently installed.) 709s Preparing to unpack .../libc-gconv-modules-extra_2.42-2ubuntu5_arm64.deb ... 709s Unpacking libc-gconv-modules-extra:arm64 (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 709s Setting up libc-gconv-modules-extra:arm64 (2.42-2ubuntu5) ... 709s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 89360 files and directories currently installed.) 709s Preparing to unpack .../libc6_2.42-2ubuntu5_arm64.deb ... 710s Unpacking libc6:arm64 (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 710s Setting up libc6:arm64 (2.42-2ubuntu5) ... 710s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 89360 files and directories currently installed.) 710s Preparing to unpack .../libc-bin_2.42-2ubuntu5_arm64.deb ... 710s Unpacking libc-bin (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 710s Setting up libc-bin (2.42-2ubuntu5) ... 710s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 89360 files and directories currently installed.) 710s Preparing to unpack .../locales_2.42-2ubuntu5_all.deb ... 710s Unpacking locales (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 710s Preparing to unpack .../python3-linkify-it_2.0.3-1ubuntu3_all.deb ... 710s Unpacking python3-linkify-it (2.0.3-1ubuntu3) over (2.0.3-1ubuntu2) ... 711s Preparing to unpack .../pollinate_4.33-4ubuntu5_all.deb ... 711s Unpacking pollinate (4.33-4ubuntu5) over (4.33-4ubuntu4) ... 711s Preparing to unpack .../python3-referencing_0.36.2-1ubuntu2_all.deb ... 711s Unpacking python3-referencing (0.36.2-1ubuntu2) over (0.36.2-1ubuntu1) ... 711s Setting up locales (2.42-2ubuntu5) ... 711s Generating locales (this might take a while)... 713s en_US.UTF-8... done 713s Generation complete. 713s Setting up pollinate (4.33-4ubuntu5) ... 724s Setting up python3-linkify-it (2.0.3-1ubuntu3) ... 724s Setting up python3-referencing (0.36.2-1ubuntu2) ... 724s Processing triggers for man-db (2.13.1-1) ... 726s Processing triggers for install-info (7.2-5) ... 726s Processing triggers for systemd (259-1ubuntu3) ... 727s autopkgtest [04:08:08]: upgrading testbed (apt dist-upgrade and autopurge) 727s Reading package lists... 727s Building dependency tree... 727s Reading state information... 727s Calculating upgrade... 728s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 728s Reading package lists... 728s Building dependency tree... 728s Reading state information... 728s Solving dependencies... 729s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 729s autopkgtest [04:08:10]: rebooting testbed after setup commands that affected boot 770s Reading package lists... 771s Building dependency tree... 771s Reading state information... 771s Solving dependencies... 771s The following NEW packages will be installed: 771s libssw0 ssw-align 771s 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. 771s Need to get 42.5 kB of archives. 771s After this operation, 170 kB of additional disk space will be used. 771s Get:1 http://ftpmaster.internal/ubuntu resolute/universe arm64 libssw0 arm64 1.1-15 [21.8 kB] 771s Get:2 http://ftpmaster.internal/ubuntu resolute/universe arm64 ssw-align arm64 1.1-15 [20.7 kB] 772s Fetched 42.5 kB in 0s (547 kB/s) 772s Selecting previously unselected package libssw0:arm64. 772s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 89360 files and directories currently installed.) 772s Preparing to unpack .../libssw0_1.1-15_arm64.deb ... 772s Unpacking libssw0:arm64 (1.1-15) ... 772s Selecting previously unselected package ssw-align. 772s Preparing to unpack .../ssw-align_1.1-15_arm64.deb ... 772s Unpacking ssw-align (1.1-15) ... 772s Setting up libssw0:arm64 (1.1-15) ... 772s Setting up ssw-align (1.1-15) ... 772s Processing triggers for libc-bin (2.42-2ubuntu5) ... 772s Processing triggers for man-db (2.13.1-1) ... 776s autopkgtest [04:08:57]: test run-example: [----------------------- 776s target_name: chr1 776s query_name: chr1 776s optimal_alignment_score: 2002 suboptimal_alignment_score: 1000 strand: + target_begin: 1 target_end: 1001 query_begin: 1 query_end: 1001 776s 776s Target: 1 TAAACAGGTTAATCGCCACGACATAGTAGTATTTAGAGTTACTAGTAAGCCTGATGCCAC 60 776s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 776s Query: 1 TAAACAGGTTAATCGCCACGACATAGTAGTATTTAGAGTTACTAGTAAGCCTGATGCCAC 60 776s 776s Target: 61 TACACAATTCTAGCTTTTCTCTTTAGGATGATTGTTTCATTCAGTCTTATCTCTTTTAGA 120 776s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 776s Query: 61 TACACAATTCTAGCTTTTCTCTTTAGGATGATTGTTTCATTCAGTCTTATCTCTTTTAGA 120 776s 776s Target: 121 AAACATAGGAAAAAATTATTTAATAATAAAATTTAATTGGCAAAATGAAGGTATGGCTTA 180 776s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 776s Query: 121 AAACATAGGAAAAAATTATTTAATAATAAAATTTAATTGGCAAAATGAAGGTATGGCTTA 180 776s 776s Target: 181 TAAGAGTGTTTTCCTATTGTTTTCAGTGTAGGACTCACTGTTCTAAATAACTGGGACACC 240 776s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 776s Query: 181 TAAGAGTGTTTTCCTATTGTTTTCAGTGTAGGACTCACTGTTCTAAATAACTGGGACACC 240 776s 776s Target: 241 CAAGGATTCTGTAAAATGCCATCCAGTTATCATTTATATTCCCTAACTCAAAATTCATTC 300 776s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 776s Query: 241 CAAGGATTCTGTAAAATGCCATCCAGTTATCATTTATATTCCCTAACTCAAAATTCATTC 300 776s 776s Target: 301 ACATGTATTCATTTTTTTCTAAACAAATTAGCATGTAGAATTCTGGTTAAAATTTGGCAT 360 776s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 776s Query: 301 ACATGTATTCATTTTTTTCTAAACAAATTAGCATGTAGAATTCTGGTTAAAATTTGGCAT 360 776s 776s Target: 361 AGAACACCCGGGTATTTTTTCATAATGCACCCAATAACTGTCATTCACTAATTGAGAATG 420 776s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 776s Query: 361 AGAACACCCGGGTATTTTTTCATAATGCACCCAATAACTGTCATTCACTAATTGAGAATG 420 776s 776s Target: 421 GTGATTTAACAAAGGATAATAAAGTTATGAAACCAATGCCACAAAACATCTGTCTCTAAC 480 776s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 776s Query: 421 GTGATTTAACAAAGGATAATAAAGTTATGAAACCAATGCCACAAAACATCTGTCTCTAAC 480 776s 776s Target: 481 TGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGAGGGAGAGAGAGAAAATTTCACT 540 776s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 776s Query: 481 TGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGAGGGAGAGAGAGAAAATTTCACT 540 776s 776s Target: 541 CCCTCCATAAATCTCACAGTATTCTTTTCTTTTTCCTTTCCTTTCCTTGCTCTTCTTTCT 600 776s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 776s Query: 541 CCCTCCATAAATCTCACAGTATTCTTTTCTTTTTCCTTTCCTTTCCTTGCTCTTCTTTCT 600 776s 776s Target: 601 CTCCTATTGCTTTCCTTTCATTTCCTTCTCATAAAAGAAAAATAACAATATAGAAAATAA 660 776s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 776s Query: 601 CTCCTATTGCTTTCCTTTCATTTCCTTCTCATAAAAGAAAAATAACAATATAGAAAATAA 660 776s 776s Target: 661 CAAAATATAGATGGTCAACCTTTTTAATATTAAGGTTACCTAAAATGCCATTATCCAAAG 720 776s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 776s Query: 661 CAAAATATAGATGGTCAACCTTTTTAATATTAAGGTTACCTAAAATGCCATTATCCAAAG 720 776s 776s Target: 721 TGGTTCTCTAGAGATGCTGATGTATATACTTACATATTTTACAGTGTATTCAAATAAAGA 780 776s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 776s Query: 721 TGGTTCTCTAGAGATGCTGATGTATATACTTACATATTTTACAGTGTATTCAAATAAAGA 780 776s 776s Target: 781 GTATATTACATAAGACATATCCTTTTGTAACCAACTTTTGTCATTAACAATTTACTGGAC 840 776s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 776s Query: 781 GTATATTACATAAGACATATCCTTTTGTAACCAACTTTTGTCATTAACAATTTACTGGAC 840 776s 776s Target: 841 TTGTCAACAAACCTAAATCTGTATCGTCTATAATGGCTACGTTCATTTTGGTATGAATCT 900 776s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 776s Query: 841 TTGTCAACAAACCTAAATCTGTATCGTCTATAATGGCTACGTTCATTTTGGTATGAATCT 900 776s 780s Target: 901 TAATTACCCCTTTCTGCATTATTTAATGATTTTCTCATATGTCACTCTTAAATGTACTTC 960 780s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 780s Query: 901 TAATTACCCCTTTCTGCATTATTTAATGATTTTCTCATATGTCACTCTTAAATGTACTTC 960 780s 780s Target: 961 TAATTTTTCACTTTACATCACATAATGAATGGATCCAAATA 1001 780s ||||||||||||||||||||||||||||||||||||||||| 780s Query: 961 TAATTTTTCACTTTACATCACATAATGAATGGATCCAAATA 1001 780s 780s target_name: chr2 780s query_name: chr1 780s optimal_alignment_score: 312 suboptimal_alignment_score: 311 strand: + target_begin: 4437430 target_end: 4438470 query_begin: 9 query_end: 971 780s 780s Target: 4437430 TTGAT-TCCACAGATTCCAATAGAATAGTTTGAAGATGGAACAATTGAGAATTCTGAATG 4437488 780s ||*|| *|||| || | |||| ||||*|**||| |**||*|*| ||**||| ||| 780s Query: 9 TTAATCGCCAC-GA--C--ATAG--TAGTATTTAGA-GTTACTAGT---AAGCCTG-ATG 56 780s 780s Target: 4437489 ---CTAAGCTAAT--TAGATATGTTTTCTTTGAAGGAAAACTACATTGTATTATTTTGCC 4437543 780s |||**| ||| |||*| | ||*||||| |||| | *|||||*|*|||**| 780s Query: 57 CCACTACAC-AATTCTAGCT-T-TTCTCTTT--AGGA----T-GATTGTTTCATTCAG-- 104 780s 780s Target: 4437544 TCCTCCCTCCTCCTAGAAGCCTT----TAAAATTCATGCATCATTTTAAAAGTTTTGAAA 4437599 780s ||*|**|| ||**|||||**|*| *|||||| || *|*||**||||| ||| || 780s Query: 105 TCTTATCT-CTTTTAGAAAACATAGGAAAAAATT-AT--TTAATAATAAAA-TTT--AA- 156 780s 780s Target: 4437600 TTTTTCAAGATTATGTTTAA-GTAT--ATTA-AATATTTTGTTCAGTCATCCCAATTAGT 4437655 780s ||**||| | ||| || |||| *||| ||*| *|||| |*||*||| || 780s Query: 157 -TTGGCAA-A--ATG---AAGGTATGGCTTATAAGA--GTGTT------TTCCTATT-GT 200 780s 780s Target: 4437656 TTTCAATG--G----CCCT-TTCCATTTAAAGAGTTTGGACATTCCATATAAAAAAG-AC 4437707 780s |||||*|| | |*|| ||| ||||*|**|*||||| *||| |**|****| |* 780s Query: 201 TTTCAGTGTAGGACTCACTGTTC----TAAATAACTGGGACA-CCCA-AGGATTCTGTAA 254 780s 780s Target: 4437708 AATGTCATCTACA-TTTTC-TTTGTTTT--CT---T---AATT-AT----ATCTTTTCCT 4437752 780s ||||*|||| || ||*|| |||*|*|| || | |||| || ||*|*|||*| 780s Query: 255 AATGCCATC--CAGTTATCATTTATATTCCCTAACTCAAAATTCATTCACATGTATTCAT 312 780s 780s Target: 4437753 TTTTACAAATTTCTTAA-AAA-TAG-GTGTAAGATCTCTGATTTAACCTATGTGCGT--- 4437806 780s ||| |||||*|| ||| ||| *||| |||**|||| *||||**|*|| ||*| 780s Query: 313 TTT------TTTCTAAACAAATTAGCATGT-AGAATTCTG-GTTAAAATTTG-GCATAGA 363 780s 780s Target: 4437807 -C------TTAATTTTTCA----GCTTC---T--CTGTCATT---TTATT-AGATGTTTT 4437846 780s | *||*||||||| ||**| | |||||||| |*||| ||| 780s Query: 364 ACACCCGGGTATTTTTTCATAATGCACCCAATAACTGTCATTCACTAATTGAGA------ 417 780s 780s Target: 4437847 TATTGT-TTTTAA------TTACTAAATTAATCTTAATCTATG-CTTATTATATCATTCT 4437898 780s ||*|| *||||| *||*||||*|*|| **||*|*||| |**|**|*|||**||| 780s Query: 418 -ATGGTGATTTAACAAAGGATAATAAAGTTAT-GAAACCAATGCCACAAAACATCTGTCT 475 780s 780s Target: 4437899 CCATTAC--GT-TATGGATACAACAACT-TG-GTGAATGTTTCTG----AGATTAACACT 4437949 780s | |*|| || |*||**| *| || |||**|||*|*|| |||***|*|** 780s Query: 476 C--TAACTGGTGTGTGTGT-------GTGTGTGTGTGTGTGTGTGTGTAAGAGGGAGAGA 526 780s 780s Target: 4437950 AAAAATATTTAACAATCTCTCTCATTTTTATC----TTTTC-TTTCTTTTTCTCTTTGTC 4438004 780s *|*||*|||| ||*||*||| |||***|*|| |*||| |||||||||| |||| *| 780s Query: 527 GAGAAAATTT--CACTCCCTC-CATAAATCTCACAGTATTCTTTTCTTTTTC-CTTT-CC 581 780s 780s Target: 4438005 TTT-CTCACTCTCTATTTATCCTGTTACATCTTTGCTTCTATCTCTTTCTCTGTTTTTTT 4438063 780s ||| ||**|||| |*|||*| ||**|| |||||| || ||||| *|||**|| 780s Query: 582 TTTCCTTGCTCT-TCTTTCT-CTCCTA-----TTGCTT---TC-CTTTC---ATTTCCTT 627 780s 780s Target: 4438064 TTTTTAATATTTAAATAATGCTTCTGTCTGAGGAGGTTAAGAAGTGAAAGAAGACATTGT 4438123 780s *|**|||*|***|||||| |**|*| || || || | ||*||*|*|| 780s Query: 628 CTCATAAAAGAAAAATAA-----CAATAT-AG------AA-AA-T--AACAAAATAT--- 668 780s 780s Target: 4438124 GAGATGGAGAATCTTTATTAAGATAGAAG---AC--AAAGAGGGGATGAT-----GTGGA 4438173 780s ||||||**||*|||| ||||*|| *||| || ||| |*|**||*|| |||| 780s Query: 669 -AGATGGTCAACCTTT-TTAATAT-TAAGGTTACCTAAA-ATGCCATTATCCAAAGTGG- 723 780s 780s Target: 4438174 CACTT-TC-AG-GATG-TGGAATGGT---TACATACATTATT---CTGT-TA-TCACAAG 4438221 780s || || || |||| || || || |||*|||| |||| |*|| || ||| || 780s Query: 724 ---TTCTCTAGAGATGCTG--AT-GTATATACTTACA-TATTTTACAGTGTATTCA-AA- 774 780s 780s Target: 4438222 GTTAGCTAA-ACTCTCTTTCATAA-A-ATCTCTCTTGTTTCTTACTCCCTAAATCTCAAA 4438278 780s || || |*|*|*||*||||| | ||*|| || |||*|*|| | || || 780s Query: 775 --TA---AAGAGTATATTACATAAGACATATC-CT--TTTGTAAC-C---AA--CT---- 816 780s 780s Target: 4438279 TAAGTGACTAAAAAATGCCTGGA--TGACCCCAAACAGTAAGAATAGCTTGTA-GGTCTC 4438335 780s |**||*|*|||*||*|**||||| ||*|**||||| *|| ||| | |||| *||||* 780s Query: 817 TTTGTCATTAACAATTTACTGGACTTGTCAACAAAC-CTA--AAT--C-TGTATCGTCTA 870 780s 780s Target: 4438336 TGAAG---ATGTTATCTTTTGCCCTGGGAAGGTGGATTCCTATACTAACACCTGCACTTG 4438392 780s |*|*| |*|| ||*||| |||*| ||*|| || ||*|*||*||| || 780s Query: 871 TAATGGCTACGT--TCATTT----TGGTA---TGAAT--CT-TAATTACCCCT----TT- 913 780s 780s Target: 4438393 AAAAGGTGAACAAGATAATTTTGTATTTATTTTCTCACTA--CCACTGCAGGTAGCATGG 4438450 780s *|| | ||*||| ||*|*||||||||| || *|||| | *|| *||| 780s Query: 914 -----CTG--C---ATTATT---TAATGATTTTCTCA-TATGTCACT-C--TTA-AATG- 954 780s 780s Target: 4438451 GACACTTCTTTATTATTCAC 4438470 780s *||||| |*|||*||||| 780s Query: 955 --TACTTC-TAATTTTTCAC 971 780s 780s target_name: chr3 780s query_name: chr1 780s optimal_alignment_score: 291 suboptimal_alignment_score: 289 strand: + target_begin: 680970 target_end: 682002 query_begin: 9 query_end: 998 780s 780s Target: 680970 TTAAATTGTCA--ACATGGTA-TATATGAAATGAATTGGGTTTATAATAGTAAACCAATC 681026 780s || |||*|*|| ||||*||| ||| |*| || || ||*||||||*|| |* 780s Query: 9 TT-AATCGCCACGACATAGTAGTAT-TTA---GA-----GT---TACTAGTAAGCC--TG 53 780s 780s Target: 681027 TTG-CATTCCTAAAA---TA--AATCCTATTTAG--TTATCGT--------GTGTTATTT 681070 780s *|| ||*|*| |*|| || **|*||*||||| |*||*|| ||*||| |* 780s Query: 54 ATGCCACTAC-ACAATTCTAGCTTTTCTCTTTAGGATGATTGTTTCATTCAGTCTTA-TC 111 780s 780s Target: 681071 TCTT----AATACAGTGTTGGATTAAGTTTGCTATTTTTTATTTTAAAATTTTACATTAT 681126 780s |||| ||*||| |*|||**||*| || |||*||**||||| |||| || 780s Query: 112 TCTTTTAGAAAACA---TAGGAAAAAAT----TA--TTTAATAATAAAA-TTTA----AT 157 780s 780s Target: 681127 TTTCTTCAGTGA---TATTGACCTGT---AGTTTTCTTTCATTATACTGTTTTATCAGAT 681180 780s |**| **|*||| || ||*|*|*| |||*| |||| *||| ||||| |||| | 780s Query: 158 TGGC-AAAATGAAGGTA-TGGCTTATAAGAGTGT--TTTC-CTAT--TGTTT--TCAG-T 207 780s 780s Target: 681181 TTAGGTATCAGTGTTAT-AGTTTCT---TCATGAAAGGAAT---TAAGATGTTTTCCTTC 681233 780s *||||**|||*||||*| |*|**|| *||***|||||*| |||*||| ||*|| 780s Query: 208 GTAGGACTCACTGTTCTAAATAACTGGGACACCCAAGGATTCTGTAAAATG----CCATC 263 780s 780s Target: 681234 C-CTT-TCA---ATGTT------CTGAATAATCATACAGCAT-TA-TGACTATCTGCCAT 681280 780s | *|| ||| ||*|| ||*||*|*||||*|| ||| || |*|*|*|*| | 780s Query: 264 CAGTTATCATTTATATTCCCTAACTCAAAATTCATTCA-CATGTATTCATTTTTT----T 318 780s 780s Target: 681281 TTAAATC--TTTAGAAT----AATTACCTTGTGAAACTATGTGGGCTTGGTGCTATTTTG 681334 780s *|||| | *||||*|| |||| ||*||*||| || |*|||*|*|**| | ***| 780s Query: 319 CTAAA-CAAATTAGCATGTAGAATT--CTGGTTAAA--AT-TTGGCATAGAAC-A-CCCG 370 780s 780s Target: 681335 TGTAGTATTTATC-TAATTGTTTCCTATA--TTTC-TT--CTA--TGAAATTGGTTGATT 681386 780s *||| | |||*|| ||| ||***||*||| |*|| || ||| |||*|*||| ||||| 780s Query: 371 GGTA-T-TTTTTCATAA-TGCACCCAATAACTGTCATTCACTAATTGAGAATGG-TGATT 426 780s 780s Target: 681387 TAATCTTTCTAACACTAATAAGATTAATTTGAGTAAACTTCATTTCTCTAGAAAATAATT 681446 780s ||| |*||***||||||**||| || |||| ||*|*| | |*||||*| | 780s Query: 427 TAA-----CAAAGGATAATAAAGTTA---TG---AAAC--CAATGC-C-ACAAAACA--T 469 780s 780s Target: 681447 AATTCATCAAATTAAATCAAATTTGAAATTTGATTTCAAATTTATTTGTGTCAAAGTAA- 681505 780s ***|| || |||*|****|*|| |*|| |*| *|*|*|*|||||****|||| 780s Query: 470 CTGTC-TC----TAACTGGTGTGTG---TGTG-TGT---GTGTGTGTGTGTGTGTGTAAG 517 780s 780s Target: 681506 A-GGAG-G--------TTTC-CT--GT-CATTTTAAAATTCTC----TGTTGTTTTAATA 681547 780s | |||| | |||| || *| || |||| |||| |*||*|||| *|* 780s Query: 518 AGGGAGAGAGAGAAAATTTCACTCCCTCCA---TAAA--TCTCACAGTATTCTTTT-CTT 571 780s 780s Target: 681548 GTAACTT--GTTT-CTTATTATTTATAACTTTAT---ATATT--TGTACTT---TTTCCT 681596 780s *|**||| *||| |||**|*|| ||||*| *|||| |*|*||| ||||| 780s Query: 572 TTTCCTTTCCTTTCCTTGCTCTT-----CTTTCTCTCCTATTGCTTTCCTTTCATTTCC- 625 780s 780s Target: 681597 TTTTTATCAAATG--AACT--GAGTTT------TAAC-----ATCGCAT--TTAA---TT 681636 780s ||*|*|| |||*| ||*| *|*|*| |||| ||*| || |*|| || 780s Query: 626 TTCTCAT-AAAAGAAAAATAACAATATAGAAAATAACAAAATATAG-ATGGTCAACCTTT 683 780s 780s Target: 681637 TTAATTATCTAATCTAAATCTAAAAGCTGATATTTGATTCAA-----TTGTC-AGAAATC 681690 780s |||| ||| |||**| *|*|||||| ||**||| ||*||| ||*|| |||*|| 780s Query: 684 TTAA-TAT-TAAGGT-TACCTAAAA--TGCCATT--ATCCAAAGTGGTTCTCTAGAGAT- 735 780s 780s Target: 681691 TCTTAAGTATATTGGGATCAACTTGGAAAAGTAAATTGACTTTAAACAGTACACTT--TA 681748 780s *||*|*|||||| |||| |*| | ||| || |||||**| || *| 780s Query: 736 GCTGATGTATAT--------ACTT--ACA--T--ATT---TT---ACAGTGTA-TTCAAA 774 780s 780s Target: 681749 TGAACTTTAAATTACAGATCAGATAT--TTTTAGTAA--AA-TTTTATCCAAACTAAGAT 681803 780s |*||***||*||||||*|**|*|||| |||| |||| || ||||*|| |*||| 780s Query: 775 TAAAGAGTATATTACATAAGACATATCCTTTT-GTAACCAACTTTTGTC---ATTAA--- 827 780s 780s Target: 681804 GCAATATGAGTATAATCACTGATTCAA-AAAGCTTCCTTTAGTGAGCATGAAATATC-TC 681861 780s |||| |*|*|**|*| || |||| ||| || || *|*| || |||| | 780s Query: 828 -CAAT-TTACTGGACT---TG--TCAACAAA----CC--TA--AATC-TG---TATCGT- 867 780s 780s Target: 681862 ACTATTTTAAT---T---TTAATATTGATTGTGTGTTAAAATAATAATAATTGCATTAT- 681914 780s ||| |||| | ||*||*||| ||*|| |||**||||*|***|*||*| 780s Query: 868 -CTA---TAATGGCTACGTTCATTTTG---GTATG----AATCTTAATTACCCCTTTCTG 916 780s 780s Target: 681915 -ATTATTGATAATGTGTATTCTTGTCATGTTTCCATTCTTACTGGAAATG--CCTCCAGT 681971 780s |||||| ||||| ||| ||*||||*|*| ||*|||| ||||| |*||*|*| 780s Query: 917 CATTATT--TAATG---ATT-TTCTCATATGT-CACTCTT-----AAATGTACTTCTAAT 964 780s 780s Target: 681972 GTTTC----TCCATCAAATAGTAT-ACTGGCTCTAA 682002 780s *|||| |*|||||*||| || |*|||*||*|| 780s Query: 965 TTTTCACTTTACATCACATA--ATGAATGGATCCAA 998 780s 780s target_name: chr4 780s query_name: chr1 780s optimal_alignment_score: 280 suboptimal_alignment_score: 273 strand: + target_begin: 47000 target_end: 48059 query_begin: 2 query_end: 1001 780s 780s Target: 47000 AAACATCTT-ATAGCTACTGGATTCTTTTTTGCCTATGTATTTA----TA-TATGT--G- 47050 780s |||||**|| ||*||*|| || | *|*| || ||||||| || || || | 780s Query: 2 AAACAGGTTAATCGCCAC--GA--C---ATAG--TA-GTATTTAGAGTTACTA-GTAAGC 50 780s 780s Target: 47051 CTGTAT----CTATGTAATGTCTA--TTTTTATAAAGCTCTAATTGACCTAGAGGAAAAT 47104 780s ||| || |||***||| |||| |||| |||| || ||| || 780s Query: 51 CTG-ATGCCACTACACAAT-TCTAGCTTTT-------CTCT--TT-------AGG---AT 89 780s 780s Target: 47105 GA--GTTT--TTGAATCAAATAT-TTTTTGAAGGGAAAGTAAAAACTGTGGTACATTGAA 47159 780s || |||| ||*|*||**||*| ||||*|||***|*||*||||| ||| | 780s Query: 90 GATTGTTTCATTCAGTCTTATCTCTTTTAGAAAACATAGGAAAAA---------ATT-A- 138 780s 780s Target: 47160 GTTCACATGACTAATCATTGAGAAATAAAAACAGACTTAGCAATTATTGGTAAAAAGCAG 47219 780s || |||| ||||||| || |*|||||*||||*|*|| 780s Query: 139 -TT--------TAAT--------AATAAAA------TT-----TAATTGGCAAAATGAAG 170 780s 780s Target: 47220 --ATG--TTAAAA-----TATAC--ATTTTTGTTCAGGGTTAAAGGA-T---TGTTCTGA 47264 780s ||| |||*|| |*|*| |||*|| |||||*|| |||| | ||||||*| 780s Query: 171 GTATGGCTTATAAGAGTGTTTTCCTATTGTT-TTCAGTGT---AGGACTCACTGTTCTAA 226 780s 780s Target: 47265 ATTA----GATA---A--GATAAAGCTAAAAGTTTAAACAAGTTATAA---AAAGTTTCT 47312 780s ||*| ||*| | |||***| ||||| |***|*|*||||||*| |*|*|**|| 780s Query: 227 ATAACTGGGACACCCAAGGATTCTG-TAAAA-TGCCATCCAGTTATCATTTATATTCCCT 284 780s 780s Target: 47313 A--T-AAAATTCATCTTGCCA-AAGAA---ATTTTGTCCATGAACATTAAATTACGAAAG 47365 780s | | ||||||||| | || |*|*| |||||*|*| |*||| |||||| |*|*| 780s Query: 285 AACTCAAAATTCAT-T---CACATGTATTCATTTTTTTC-TAAAC---AAATTA-GCATG 335 780s 780s Target: 47366 GTATTATATGTTTTTTTGGT--AAATTAAGCATTTAAATAATAGCACAACAAGGTA---- 47419 780s ||*| *||*|||| |||||**|| ||||*|||*|**|||| 780s Query: 336 ----TAGA----ATTCTGGTTAAAATTTGGC---------ATAGAACACCCGGGTATTTT 378 780s 780s Target: 47420 CTCTTAAGGCAC----TAATCTGCTCTTTAGCAAAATTTGTAAA--GTG--TTATAAACG 47471 780s *||*|||*|||| ||| ||| ||*|| ||**|*|||**|| ||| |||**||*| 780s Query: 379 TTCATAATGCACCCAATAA-CTG-TCATT--CACTAATTGAGAATGGTGATTTAACAAAG 434 780s 780s Target: 47472 GGTTTTACTTTTGTAAATTTTTTGAAACAATTGTGGCAAAA------TAAATAACATGGT 47525 780s | | |**|||| *||*||||||*|*||***||||| |***|||| |||| 780s Query: 435 G-----A---TAATAAA-GTTATGAAACCAATGCCACAAAACATCTGTCTCTAAC-TGGT 484 780s 780s Target: 47526 AATCTG-GAAT-TCTATTTCATAACATCAAGTGT-TTTAA-------ACCTCTAACATTT 47575 780s *|*|| |**| |*|*|*| *| *| |||| |*||| |*****||*|||| 780s Query: 485 -GTGTGTGTGTGTGTGTGT-GT---GT---GTGTGTGTAAGAGGGAGAGAGAGAAAATTT 536 780s 780s Target: 47576 C-TTC---CCA-AAATCAAAC----TTCAGTTTCAAAATTGT--CTTTCCT---CGTGC- 47620 780s | *|| ||| |||||**|| ||| *|||| ||*| ||||||| |*||| 780s Query: 537 CACTCCCTCCATAAATCTCACAGTATTC-TTTTC----TTTTTCCTTTCCTTTCCTTGCT 591 780s 780s Target: 47621 CTGACTTT-TGAATGCTACAGAGGGC---CCCTGGAGTATCC-------AAAAGAGAGGT 47669 780s || *|||| | || |**|**|| ||*|**| |*||| ||||||*|**| 780s Query: 592 CT-TCTTTCT-----CT-CCTATTGCTTTCCTTTCA-TTTCCTTCTCATAAAAGAAAAAT 643 780s 780s Target: 47670 AAACTGGATTATTTGACATATTTAGTTACATGGGATTGCCAATCTTCTTTAGGTTATAT- 47728 780s ||| |*|||***|*|||***|**||*| |||*|*|||*||| |||| |||| 780s Query: 644 -AAC---AATATAGAAAATAACAAAATATA---GATGGTCAACCTT-TTTA----ATATT 691 780s 780s Target: 47729 -AGGTTA--TATTTTG--AT-----AAA-T-ATTCTATAGGTTATATTTTGATAAATGAT 47776 780s |||||| ||***|| || ||| | *||||*||| |*||**||||**|| || 780s Query: 692 AAGGTTACCTAAAATGCCATTATCCAAAGTGGTTCTCTAG---AGATGCTGATGTAT-AT 747 780s 780s Target: 47777 ACTAATATATGTTCCAAAATTGTATGAGATTTCTAATGTCTGAGTATATGCTATCAAAAT 47836 780s |||*|*||||*|| |*|*|||| |||*||| ***|||||||| || || 780s Query: 748 ACTTACATATTTT---ACAGTGTA------TTCAAAT-AAAGAGTATAT--TA-CA---- 790 780s 780s Target: 47837 TAAG--GTTT--TTATGT---TAAGTTATTGT-A--AAC----CACAGAGA-TT---ATC 47878 780s |||| *|*| ||*||| *||*|| |||| | ||| *||*| || || |*| 780s Query: 791 TAAGACATATCCTTTTGTAACCAACTT-TTGTCATTAACAATTTACTG-GACTTGTCAAC 848 780s 780s Target: 47879 AAACTTCTTTGTCAACTGTGTTTCTGACTATAA---CTACCCTGGACATTTTGTTATTCA 47935 780s |||| || ||*|*|||*|| |*|||||| |||| |**|||||||*||| 780s Query: 849 AAAC--CT-----AAATCTGTATC-GTCTATAATGGCTAC---GTTCATTTTGGTAT--- 894 780s 780s Target: 47936 AAGACAATTGTCTTGTTTAGATCCTTTTCAAGAGATAGTTTATAAGA--AGCTACAGAAC 47993 780s || | ||||**|| |*||*|||| *| *||**|||| |*|| **|| ||*| 780s Query: 895 --GA-A----TCTTAATT--ACCCCTTTC-TG-CATTATTTA-ATGATTTTCT-CATA-- 939 780s 780s Target: 47994 TGTGACAGGTGCTCTCAAATGCAGTTTTCCAA---ATAACTTTGGAGATCATGACAT--T 48048 780s ||| || ||||*|||||*| *|||*|| *|*||||| | |||*|||| | 780s Query: 940 TGT--CA----CTCTTAAATGTA--CTTCTAATTTTTCACTTT--A---CATCACATAAT 986 780s 780s Target: 48049 GAA---AT--AAAGTA 48059 780s ||| || ||| || 780s Query: 987 GAATGGATCCAAA-TA 1001 780s 780s target_name: chr5 780s query_name: chr1 780s optimal_alignment_score: 230 suboptimal_alignment_score: 199 strand: + target_begin: 8806 target_end: 9723 query_begin: 11 query_end: 974 780s 780s Target: 8806 AATGGCCAGGGCACTGAGGAG-CTGTGGAAGAACTGGGGAAATCACCGAAACCCAGTAC- 8863 780s |||*||||*|*|| | ||*|| *|*|*||***||| *|*||*| |*| |**|||*||| 780s Query: 11 AATCGCCACGACA-T-AGTAGTATTTAGAGTTACT--AGTAAGC-CTG-ATGCCACTACA 64 780s 780s Target: 8864 CATTTCAGTGAGGCCATTCTC--CA--AAAACTCTCTC---CA-TCTTATTTCTT---G- 8911 780s ||*||| | | ||**||||| *| |**|*|*|*|| || ||||||*|||| | 780s Query: 65 CAATTC--T-A-GCTTTTCTCTTTAGGATGATTGTTTCATTCAGTCTTATCTCTTTTAGA 120 780s 780s Target: 8912 ------GGGAAAGAGTTCTTCTACT--TACAATATGAT---CAACCTGA--TTAAG---A 8955 780s *|||||*|*||*|| ||*| ||*|||*|*|| |||**||| *||*| * 780s Query: 121 AAACATAGGAAAAAATTATT-TAATAATAAAATTTAATTGGCAAAATGAAGGTATGGCTT 179 780s 780s Target: 8956 AT-ATATTGGTTT-CTATAACTGTGATGCAGATTATAACTATACAAATGCCAATTACCAG 9013 780s || |*|*||*||| |||| ||| *|*|||**||**||| | |*|| || |*|* 780s Query: 180 ATAAGAGTGTTTTCCTAT---TGT-TTTCAGTGTAGGACT---C-ACTG----TT-CTAA 226 780s 780s Target: 9014 A-AGCTAAGCCACCC--TGATTC--CAAAAT---AT--AGTCTCACATTTCATGGTTTCC 9063 780s | |*||**|*||||| *||||| *||||| || ||| |**||||| || *|||| 780s Query: 227 ATAACTGGGACACCCAAGGATTCTGTAAAATGCCATCCAGT-TATCATTT-AT--ATTCC 282 780s 780s Target: 9064 TGGTA--TCAGAAATCCCTATGAGCCTG-A--GATTTTTTCCCTTAA-------AGCA-- 9109 780s *|| ||| ||||*|*| |*| |*|| | *|||||||*| ||| |||| 780s Query: 283 --CTAACTCA-AAATTCAT-TCA-CATGTATTCATTTTTTTC--TAAACAAATTAGCATG 335 780s 780s Target: 9110 ---AATACTG---AAGAT-----A-AGAA-ACC----AATTAATTTCATTGTTGC----- 9147 780s |||*||| ||*|| | |||| ||| *||| *||||| |**||| 780s Query: 336 TAGAATTCTGGTTAAAATTTGGCATAGAACACCCGGGTATT-TTTTCA-TAATGCACCCA 393 780s 780s Target: 9148 -TATCTTGT-AT---CCAATGGCATAA----AATCTATACTAACTTGATTAGAAA-TTCT 9197 780s ||*| ||| || |*|||*| |*|| *||*|| ||*|| *|||*|*||| ||*| 780s Query: 394 ATAAC-TGTCATTCACTAATTG-AGAATGGTGATTTA-ACAAA--GGATAATAAAGTTAT 448 780s 780s Target: 9198 G---CCAATG------AACAACT-T---TA--T--TGT-TTTGAGTGATG---------- 9229 780s | |||||| ||||*|| | || | ||| |*||*||| || 780s Query: 449 GAAACCAATGCCACAAAACATCTGTCTCTAACTGGTGTGTGTGTGTG-TGTGTGTGTGTG 507 780s 780s Target: 9230 -------AAGCCCCATTTGAGA-ATATAGGCTCAATGGCCTTGC-----TCT-----TA- 9270 780s |||****| |||| |*|*|***|||*| ||*|*| ||| || 780s Query: 508 TGTGTGTAAGAGGGA---GAGAGAGAAAATTTCACT--CCCTCCATAAATCTCACAGTAT 562 780s 780s Target: 9271 ACTGTTCTCTATGCAGTCACTTTCTTCTGCACTAAAGTGCCAATACAGATACTG-AATAC 9329 780s *||*||||*|*|*|**|| |||||*| |||*|| **|**|**|*| ||*|| **|*| 780s Query: 563 TCTTTTCTTTTTCCTTTC-CTTTCCT-TGCTCT--TCTTTCTCTCC---TATTGCTTTCC 615 780s 780s Target: 9330 ATTGATTTAAAT-ACATAGATATATAAATA--GATAT-TTAAATATGC--AATATATATG 9383 780s *||*||||***| *|||| |*|*|*||||| *|||| **||||| *| ||||||*||| 780s Query: 616 TTTCATTTCCTTCTCATA-AAAGAAAAATAACAATATAGAAAATA-ACAAAATATAGATG 673 780s 780s Target: 9384 G--ATAC---TTTATATATT--GATT---TAAA----CATTTTCC--------TCTCATA 9421 780s | | || |||| ||||| |*|| |||| ||||*||| |||| || 780s Query: 674 GTCA-ACCTTTTTA-ATATTAAGGTTACCTAAAATGCCATTATCCAAAGTGGTTCTC-TA 730 780s 780s Target: 9422 GA-----TGA--AAAATCACTCTAACATGTATTGATGGCTTCACA-AGAAATCATTTACA 9473 780s || ||| *|*|| ||| | ||| |||| || ||| *|*|*|||**||*| 780s Query: 731 GAGATGCTGATGTATAT-ACT-T-ACA--TATT------TT-ACAGTGTATTCAAATAAA 778 780s 780s Target: 9474 GAAAATAATTGCATATGATACAGT--GTTTGTGCCAAAATGTATTCATGGCTTTAAAAAC 9531 780s ||**|| |||*||||*||*|*| | *|||||**|*||*| || ||*|*||||*|| 780s Query: 779 GAGTAT-ATTACATAAGACATA-TCCTTTTGTAACCAACT---TT--TGTCATTAACAA- 830 780s 780s Target: 9532 TTCAGTGGAAATGTCTATTCAGATCCCTAGCCCATTGTTAAATTGGTTTCTGTTTTCTTG 9591 780s ||*|*||||**||||*| || |*|| |||||**||*|| | ||| 780s Query: 831 TTTACTGGACTTGTCAA--CA-AACC------------TAAATCTGTATC-G---TCT-- 869 780s 780s Target: 9592 CTAAGTTTGAGCTGC-TTATAGATGATGGATATTGACCCCTTATAGATGTTGGATATTGA 9650 780s *||| || |||*| || *||**||| || ||| ||*|| | ||| | 780s Query: 870 ATAA---TG-GCTACGTT---CATTTTGG-TA-TGA----------ATCTT--A-ATT-A 906 780s 780s Target: 9651 CCCC-TTGTGGATGTATGGCCGGTGCTTTTCCCAGTATTTAGGTCATCTCTGCA---CAC 9706 780s |||| ||*||*|| ||| ****||*|||||*|| ||| |||| ||||**| *|| 780s Query: 907 CCCCTTTCTGCAT-TAT--TTAATGATTTTCTCA-TAT----GTCA-CTCTTAAATGTAC 957 780s 780s Target: 9707 TGTTGATTGTTTC-CTTT 9723 780s |**|*||| |||| |||| 780s Query: 958 TTCTAATT-TTTCACTTT 974 780s 780s CPU time: 4.082437 seconds 780s target_name: chr1 780s query_name: chr1 780s optimal_alignment_score: 2002 suboptimal_alignment_score: 1000 strand: + target_begin: 1 target_end: 1001 query_begin: 1 query_end: 1001 780s 780s Target: 1 TAAACAGGTTAATCGCCACGACATAGTAGTATTTAGAGTTACTAGTAAGCCTGATGCCAC 60 780s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 780s Query: 1 TAAACAGGTTAATCGCCACGACATAGTAGTATTTAGAGTTACTAGTAAGCCTGATGCCAC 60 780s 780s Target: 61 TACACAATTCTAGCTTTTCTCTTTAGGATGATTGTTTCATTCAGTCTTATCTCTTTTAGA 120 780s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 780s Query: 61 TACACAATTCTAGCTTTTCTCTTTAGGATGATTGTTTCATTCAGTCTTATCTCTTTTAGA 120 780s 780s Target: 121 AAACATAGGAAAAAATTATTTAATAATAAAATTTAATTGGCAAAATGAAGGTATGGCTTA 180 780s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 780s Query: 121 AAACATAGGAAAAAATTATTTAATAATAAAATTTAATTGGCAAAATGAAGGTATGGCTTA 180 780s 780s Target: 181 TAAGAGTGTTTTCCTATTGTTTTCAGTGTAGGACTCACTGTTCTAAATAACTGGGACACC 240 780s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 780s Query: 181 TAAGAGTGTTTTCCTATTGTTTTCAGTGTAGGACTCACTGTTCTAAATAACTGGGACACC 240 780s 780s Target: 241 CAAGGATTCTGTAAAATGCCATCCAGTTATCATTTATATTCCCTAACTCAAAATTCATTC 300 780s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 780s Query: 241 CAAGGATTCTGTAAAATGCCATCCAGTTATCATTTATATTCCCTAACTCAAAATTCATTC 300 780s 780s Target: 301 ACATGTATTCATTTTTTTCTAAACAAATTAGCATGTAGAATTCTGGTTAAAATTTGGCAT 360 780s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 780s Query: 301 ACATGTATTCATTTTTTTCTAAACAAATTAGCATGTAGAATTCTGGTTAAAATTTGGCAT 360 780s 780s Target: 361 AGAACACCCGGGTATTTTTTCATAATGCACCCAATAACTGTCATTCACTAATTGAGAATG 420 780s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 780s Query: 361 AGAACACCCGGGTATTTTTTCATAATGCACCCAATAACTGTCATTCACTAATTGAGAATG 420 780s 780s Target: 421 GTGATTTAACAAAGGATAATAAAGTTATGAAACCAATGCCACAAAACATCTGTCTCTAAC 480 780s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 780s Query: 421 GTGATTTAACAAAGGATAATAAAGTTATGAAACCAATGCCACAAAACATCTGTCTCTAAC 480 780s 780s Target: 481 TGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGAGGGAGAGAGAGAAAATTTCACT 540 780s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 780s Query: 481 TGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGAGGGAGAGAGAGAAAATTTCACT 540 780s 780s Target: 541 CCCTCCATAAATCTCACAGTATTCTTTTCTTTTTCCTTTCCTTTCCTTGCTCTTCTTTCT 600 780s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 780s Query: 541 CCCTCCATAAATCTCACAGTATTCTTTTCTTTTTCCTTTCCTTTCCTTGCTCTTCTTTCT 600 780s 780s Target: 601 CTCCTATTGCTTTCCTTTCATTTCCTTCTCATAAAAGAAAAATAACAATATAGAAAATAA 660 780s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 780s Query: 601 CTCCTATTGCTTTCCTTTCATTTCCTTCTCATAAAAGAAAAATAACAATATAGAAAATAA 660 780s 780s Target: 661 CAAAATATAGATGGTCAACCTTTTTAATATTAAGGTTACCTAAAATGCCATTATCCAAAG 720 780s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 780s Query: 661 CAAAATATAGATGGTCAACCTTTTTAATATTAAGGTTACCTAAAATGCCATTATCCAAAG 720 780s 780s Target: 721 TGGTTCTCTAGAGATGCTGATGTATATACTTACATATTTTACAGTGTATTCAAATAAAGA 780 780s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 780s Query: 721 TGGTTCTCTAGAGATGCTGATGTATATACTTACATATTTTACAGTGTATTCAAATAAAGA 780 780s 780s Target: 781 GTATATTACATAAGACATATCCTTTTGTAACCAACTTTTGTCATTAACAATTTACTGGAC 840 780s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 780s Query: 781 GTATATTACATAAGACATATCCTTTTGTAACCAACTTTTGTCATTAACAATTTACTGGAC 840 780s 780s Target: 841 TTGTCAACAAACCTAAATCTGTATCGTCTATAATGGCTACGTTCATTTTGGTATGAATCT 900 780s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 780s Query: 841 TTGTCAACAAACCTAAATCTGTATCGTCTATAATGGCTACGTTCATTTTGGTATGAATCT 900 780s 784s Target: 901 TAATTACCCCTTTCTGCATTATTTAATGATTTTCTCATATGTCACTCTTAAATGTACTTC 960 784s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 784s Query: 901 TAATTACCCCTTTCTGCATTATTTAATGATTTTCTCATATGTCACTCTTAAATGTACTTC 960 784s 784s Target: 961 TAATTTTTCACTTTACATCACATAATGAATGGATCCAAATA 1001 784s ||||||||||||||||||||||||||||||||||||||||| 784s Query: 961 TAATTTTTCACTTTACATCACATAATGAATGGATCCAAATA 1001 784s 784s target_name: chr2 784s query_name: chr1 784s optimal_alignment_score: 312 suboptimal_alignment_score: 311 strand: + target_begin: 4437430 target_end: 4438470 query_begin: 9 query_end: 971 784s 784s Target: 4437430 TTGAT-TCCACAGATTCCAATAGAATAGTTTGAAGATGGAACAATTGAGAATTCTGAATG 4437488 784s ||*|| *|||| || | |||| ||||*|**||| |**||*|*| ||**||| ||| 784s Query: 9 TTAATCGCCAC-GA--C--ATAG--TAGTATTTAGA-GTTACTAGT---AAGCCTG-ATG 56 784s 784s Target: 4437489 ---CTAAGCTAAT--TAGATATGTTTTCTTTGAAGGAAAACTACATTGTATTATTTTGCC 4437543 784s |||**| ||| |||*| | ||*||||| |||| | *|||||*|*|||**| 784s Query: 57 CCACTACAC-AATTCTAGCT-T-TTCTCTTT--AGGA----T-GATTGTTTCATTCAG-- 104 784s 784s Target: 4437544 TCCTCCCTCCTCCTAGAAGCCTT----TAAAATTCATGCATCATTTTAAAAGTTTTGAAA 4437599 784s ||*|**|| ||**|||||**|*| *|||||| || *|*||**||||| ||| || 784s Query: 105 TCTTATCT-CTTTTAGAAAACATAGGAAAAAATT-AT--TTAATAATAAAA-TTT--AA- 156 784s 784s Target: 4437600 TTTTTCAAGATTATGTTTAA-GTAT--ATTA-AATATTTTGTTCAGTCATCCCAATTAGT 4437655 784s ||**||| | ||| || |||| *||| ||*| *|||| |*||*||| || 784s Query: 157 -TTGGCAA-A--ATG---AAGGTATGGCTTATAAGA--GTGTT------TTCCTATT-GT 200 784s 784s Target: 4437656 TTTCAATG--G----CCCT-TTCCATTTAAAGAGTTTGGACATTCCATATAAAAAAG-AC 4437707 784s |||||*|| | |*|| ||| ||||*|**|*||||| *||| |**|****| |* 784s Query: 201 TTTCAGTGTAGGACTCACTGTTC----TAAATAACTGGGACA-CCCA-AGGATTCTGTAA 254 784s 784s Target: 4437708 AATGTCATCTACA-TTTTC-TTTGTTTT--CT---T---AATT-AT----ATCTTTTCCT 4437752 784s ||||*|||| || ||*|| |||*|*|| || | |||| || ||*|*|||*| 784s Query: 255 AATGCCATC--CAGTTATCATTTATATTCCCTAACTCAAAATTCATTCACATGTATTCAT 312 784s 784s Target: 4437753 TTTTACAAATTTCTTAA-AAA-TAG-GTGTAAGATCTCTGATTTAACCTATGTGCGT--- 4437806 784s ||| |||||*|| ||| ||| *||| |||**|||| *||||**|*|| ||*| 784s Query: 313 TTT------TTTCTAAACAAATTAGCATGT-AGAATTCTG-GTTAAAATTTG-GCATAGA 363 784s 784s Target: 4437807 -C------TTAATTTTTCA----GCTTC---T--CTGTCATT---TTATT-AGATGTTTT 4437846 784s | *||*||||||| ||**| | |||||||| |*||| ||| 784s Query: 364 ACACCCGGGTATTTTTTCATAATGCACCCAATAACTGTCATTCACTAATTGAGA------ 417 784s 784s Target: 4437847 TATTGT-TTTTAA------TTACTAAATTAATCTTAATCTATG-CTTATTATATCATTCT 4437898 784s ||*|| *||||| *||*||||*|*|| **||*|*||| |**|**|*|||**||| 784s Query: 418 -ATGGTGATTTAACAAAGGATAATAAAGTTAT-GAAACCAATGCCACAAAACATCTGTCT 475 784s 784s Target: 4437899 CCATTAC--GT-TATGGATACAACAACT-TG-GTGAATGTTTCTG----AGATTAACACT 4437949 784s | |*|| || |*||**| *| || |||**|||*|*|| |||***|*|** 784s Query: 476 C--TAACTGGTGTGTGTGT-------GTGTGTGTGTGTGTGTGTGTGTAAGAGGGAGAGA 526 784s 784s Target: 4437950 AAAAATATTTAACAATCTCTCTCATTTTTATC----TTTTC-TTTCTTTTTCTCTTTGTC 4438004 784s *|*||*|||| ||*||*||| |||***|*|| |*||| |||||||||| |||| *| 784s Query: 527 GAGAAAATTT--CACTCCCTC-CATAAATCTCACAGTATTCTTTTCTTTTTC-CTTT-CC 581 784s 784s Target: 4438005 TTT-CTCACTCTCTATTTATCCTGTTACATCTTTGCTTCTATCTCTTTCTCTGTTTTTTT 4438063 784s ||| ||**|||| |*|||*| ||**|| |||||| || ||||| *|||**|| 784s Query: 582 TTTCCTTGCTCT-TCTTTCT-CTCCTA-----TTGCTT---TC-CTTTC---ATTTCCTT 627 784s 784s Target: 4438064 TTTTTAATATTTAAATAATGCTTCTGTCTGAGGAGGTTAAGAAGTGAAAGAAGACATTGT 4438123 784s *|**|||*|***|||||| |**|*| || || || | ||*||*|*|| 784s Query: 628 CTCATAAAAGAAAAATAA-----CAATAT-AG------AA-AA-T--AACAAAATAT--- 668 784s 784s Target: 4438124 GAGATGGAGAATCTTTATTAAGATAGAAG---AC--AAAGAGGGGATGAT-----GTGGA 4438173 784s ||||||**||*|||| ||||*|| *||| || ||| |*|**||*|| |||| 784s Query: 669 -AGATGGTCAACCTTT-TTAATAT-TAAGGTTACCTAAA-ATGCCATTATCCAAAGTGG- 723 784s 784s Target: 4438174 CACTT-TC-AG-GATG-TGGAATGGT---TACATACATTATT---CTGT-TA-TCACAAG 4438221 784s || || || |||| || || || |||*|||| |||| |*|| || ||| || 784s Query: 724 ---TTCTCTAGAGATGCTG--AT-GTATATACTTACA-TATTTTACAGTGTATTCA-AA- 774 784s 784s Target: 4438222 GTTAGCTAA-ACTCTCTTTCATAA-A-ATCTCTCTTGTTTCTTACTCCCTAAATCTCAAA 4438278 784s || || |*|*|*||*||||| | ||*|| || |||*|*|| | || || 784s Query: 775 --TA---AAGAGTATATTACATAAGACATATC-CT--TTTGTAAC-C---AA--CT---- 816 784s 784s Target: 4438279 TAAGTGACTAAAAAATGCCTGGA--TGACCCCAAACAGTAAGAATAGCTTGTA-GGTCTC 4438335 784s |**||*|*|||*||*|**||||| ||*|**||||| *|| ||| | |||| *||||* 784s Query: 817 TTTGTCATTAACAATTTACTGGACTTGTCAACAAAC-CTA--AAT--C-TGTATCGTCTA 870 784s 784s Target: 4438336 TGAAG---ATGTTATCTTTTGCCCTGGGAAGGTGGATTCCTATACTAACACCTGCACTTG 4438392 784s |*|*| |*|| ||*||| |||*| ||*|| || ||*|*||*||| || 784s Query: 871 TAATGGCTACGT--TCATTT----TGGTA---TGAAT--CT-TAATTACCCCT----TT- 913 784s 784s Target: 4438393 AAAAGGTGAACAAGATAATTTTGTATTTATTTTCTCACTA--CCACTGCAGGTAGCATGG 4438450 784s *|| | ||*||| ||*|*||||||||| || *|||| | *|| *||| 784s Query: 914 -----CTG--C---ATTATT---TAATGATTTTCTCA-TATGTCACT-C--TTA-AATG- 954 784s 784s Target: 4438451 GACACTTCTTTATTATTCAC 4438470 784s *||||| |*|||*||||| 784s Query: 955 --TACTTC-TAATTTTTCAC 971 784s 784s target_name: chr3 784s query_name: chr1 784s optimal_alignment_score: 291 suboptimal_alignment_score: 289 strand: + target_begin: 680970 target_end: 682002 query_begin: 9 query_end: 998 784s 784s Target: 680970 TTAAATTGTCA--ACATGGTA-TATATGAAATGAATTGGGTTTATAATAGTAAACCAATC 681026 784s || |||*|*|| ||||*||| ||| |*| || || ||*||||||*|| |* 784s Query: 9 TT-AATCGCCACGACATAGTAGTAT-TTA---GA-----GT---TACTAGTAAGCC--TG 53 784s 784s Target: 681027 TTG-CATTCCTAAAA---TA--AATCCTATTTAG--TTATCGT--------GTGTTATTT 681070 784s *|| ||*|*| |*|| || **|*||*||||| |*||*|| ||*||| |* 784s Query: 54 ATGCCACTAC-ACAATTCTAGCTTTTCTCTTTAGGATGATTGTTTCATTCAGTCTTA-TC 111 784s 784s Target: 681071 TCTT----AATACAGTGTTGGATTAAGTTTGCTATTTTTTATTTTAAAATTTTACATTAT 681126 784s |||| ||*||| |*|||**||*| || |||*||**||||| |||| || 784s Query: 112 TCTTTTAGAAAACA---TAGGAAAAAAT----TA--TTTAATAATAAAA-TTTA----AT 157 784s 784s Target: 681127 TTTCTTCAGTGA---TATTGACCTGT---AGTTTTCTTTCATTATACTGTTTTATCAGAT 681180 784s |**| **|*||| || ||*|*|*| |||*| |||| *||| ||||| |||| | 784s Query: 158 TGGC-AAAATGAAGGTA-TGGCTTATAAGAGTGT--TTTC-CTAT--TGTTT--TCAG-T 207 784s 784s Target: 681181 TTAGGTATCAGTGTTAT-AGTTTCT---TCATGAAAGGAAT---TAAGATGTTTTCCTTC 681233 784s *||||**|||*||||*| |*|**|| *||***|||||*| |||*||| ||*|| 784s Query: 208 GTAGGACTCACTGTTCTAAATAACTGGGACACCCAAGGATTCTGTAAAATG----CCATC 263 784s 784s Target: 681234 C-CTT-TCA---ATGTT------CTGAATAATCATACAGCAT-TA-TGACTATCTGCCAT 681280 784s | *|| ||| ||*|| ||*||*|*||||*|| ||| || |*|*|*|*| | 784s Query: 264 CAGTTATCATTTATATTCCCTAACTCAAAATTCATTCA-CATGTATTCATTTTTT----T 318 784s 784s Target: 681281 TTAAATC--TTTAGAAT----AATTACCTTGTGAAACTATGTGGGCTTGGTGCTATTTTG 681334 784s *|||| | *||||*|| |||| ||*||*||| || |*|||*|*|**| | ***| 784s Query: 319 CTAAA-CAAATTAGCATGTAGAATT--CTGGTTAAA--AT-TTGGCATAGAAC-A-CCCG 370 784s 784s Target: 681335 TGTAGTATTTATC-TAATTGTTTCCTATA--TTTC-TT--CTA--TGAAATTGGTTGATT 681386 784s *||| | |||*|| ||| ||***||*||| |*|| || ||| |||*|*||| ||||| 784s Query: 371 GGTA-T-TTTTTCATAA-TGCACCCAATAACTGTCATTCACTAATTGAGAATGG-TGATT 426 784s 784s Target: 681387 TAATCTTTCTAACACTAATAAGATTAATTTGAGTAAACTTCATTTCTCTAGAAAATAATT 681446 784s ||| |*||***||||||**||| || |||| ||*|*| | |*||||*| | 784s Query: 427 TAA-----CAAAGGATAATAAAGTTA---TG---AAAC--CAATGC-C-ACAAAACA--T 469 784s 784s Target: 681447 AATTCATCAAATTAAATCAAATTTGAAATTTGATTTCAAATTTATTTGTGTCAAAGTAA- 681505 784s ***|| || |||*|****|*|| |*|| |*| *|*|*|*|||||****|||| 784s Query: 470 CTGTC-TC----TAACTGGTGTGTG---TGTG-TGT---GTGTGTGTGTGTGTGTGTAAG 517 784s 784s Target: 681506 A-GGAG-G--------TTTC-CT--GT-CATTTTAAAATTCTC----TGTTGTTTTAATA 681547 784s | |||| | |||| || *| || |||| |||| |*||*|||| *|* 784s Query: 518 AGGGAGAGAGAGAAAATTTCACTCCCTCCA---TAAA--TCTCACAGTATTCTTTT-CTT 571 784s 784s Target: 681548 GTAACTT--GTTT-CTTATTATTTATAACTTTAT---ATATT--TGTACTT---TTTCCT 681596 784s *|**||| *||| |||**|*|| ||||*| *|||| |*|*||| ||||| 784s Query: 572 TTTCCTTTCCTTTCCTTGCTCTT-----CTTTCTCTCCTATTGCTTTCCTTTCATTTCC- 625 784s 784s Target: 681597 TTTTTATCAAATG--AACT--GAGTTT------TAAC-----ATCGCAT--TTAA---TT 681636 784s ||*|*|| |||*| ||*| *|*|*| |||| ||*| || |*|| || 784s Query: 626 TTCTCAT-AAAAGAAAAATAACAATATAGAAAATAACAAAATATAG-ATGGTCAACCTTT 683 784s 784s Target: 681637 TTAATTATCTAATCTAAATCTAAAAGCTGATATTTGATTCAA-----TTGTC-AGAAATC 681690 784s |||| ||| |||**| *|*|||||| ||**||| ||*||| ||*|| |||*|| 784s Query: 684 TTAA-TAT-TAAGGT-TACCTAAAA--TGCCATT--ATCCAAAGTGGTTCTCTAGAGAT- 735 784s 784s Target: 681691 TCTTAAGTATATTGGGATCAACTTGGAAAAGTAAATTGACTTTAAACAGTACACTT--TA 681748 784s *||*|*|||||| |||| |*| | ||| || |||||**| || *| 784s Query: 736 GCTGATGTATAT--------ACTT--ACA--T--ATT---TT---ACAGTGTA-TTCAAA 774 784s 784s Target: 681749 TGAACTTTAAATTACAGATCAGATAT--TTTTAGTAA--AA-TTTTATCCAAACTAAGAT 681803 784s |*||***||*||||||*|**|*|||| |||| |||| || ||||*|| |*||| 784s Query: 775 TAAAGAGTATATTACATAAGACATATCCTTTT-GTAACCAACTTTTGTC---ATTAA--- 827 784s 784s Target: 681804 GCAATATGAGTATAATCACTGATTCAA-AAAGCTTCCTTTAGTGAGCATGAAATATC-TC 681861 784s |||| |*|*|**|*| || |||| ||| || || *|*| || |||| | 784s Query: 828 -CAAT-TTACTGGACT---TG--TCAACAAA----CC--TA--AATC-TG---TATCGT- 867 784s 784s Target: 681862 ACTATTTTAAT---T---TTAATATTGATTGTGTGTTAAAATAATAATAATTGCATTAT- 681914 784s ||| |||| | ||*||*||| ||*|| |||**||||*|***|*||*| 784s Query: 868 -CTA---TAATGGCTACGTTCATTTTG---GTATG----AATCTTAATTACCCCTTTCTG 916 784s 784s Target: 681915 -ATTATTGATAATGTGTATTCTTGTCATGTTTCCATTCTTACTGGAAATG--CCTCCAGT 681971 784s |||||| ||||| ||| ||*||||*|*| ||*|||| ||||| |*||*|*| 784s Query: 917 CATTATT--TAATG---ATT-TTCTCATATGT-CACTCTT-----AAATGTACTTCTAAT 964 784s 784s Target: 681972 GTTTC----TCCATCAAATAGTAT-ACTGGCTCTAA 682002 784s *|||| |*|||||*||| || |*|||*||*|| 784s Query: 965 TTTTCACTTTACATCACATA--ATGAATGGATCCAA 998 784s 784s target_name: chr4 784s query_name: chr1 784s optimal_alignment_score: 280 suboptimal_alignment_score: 273 strand: + target_begin: 47000 target_end: 48059 query_begin: 2 query_end: 1001 784s 784s Target: 47000 AAACATCTT-ATAGCTACTGGATTCTTTTTTGCCTATGTATTTA----TA-TATGT--G- 47050 784s |||||**|| ||*||*|| || | *|*| || ||||||| || || || | 784s Query: 2 AAACAGGTTAATCGCCAC--GA--C---ATAG--TA-GTATTTAGAGTTACTA-GTAAGC 50 784s 784s Target: 47051 CTGTAT----CTATGTAATGTCTA--TTTTTATAAAGCTCTAATTGACCTAGAGGAAAAT 47104 784s ||| || |||***||| |||| |||| |||| || ||| || 784s Query: 51 CTG-ATGCCACTACACAAT-TCTAGCTTTT-------CTCT--TT-------AGG---AT 89 784s 784s Target: 47105 GA--GTTT--TTGAATCAAATAT-TTTTTGAAGGGAAAGTAAAAACTGTGGTACATTGAA 47159 784s || |||| ||*|*||**||*| ||||*|||***|*||*||||| ||| | 784s Query: 90 GATTGTTTCATTCAGTCTTATCTCTTTTAGAAAACATAGGAAAAA---------ATT-A- 138 784s 784s Target: 47160 GTTCACATGACTAATCATTGAGAAATAAAAACAGACTTAGCAATTATTGGTAAAAAGCAG 47219 784s || |||| ||||||| || |*|||||*||||*|*|| 784s Query: 139 -TT--------TAAT--------AATAAAA------TT-----TAATTGGCAAAATGAAG 170 784s 784s Target: 47220 --ATG--TTAAAA-----TATAC--ATTTTTGTTCAGGGTTAAAGGA-T---TGTTCTGA 47264 784s ||| |||*|| |*|*| |||*|| |||||*|| |||| | ||||||*| 784s Query: 171 GTATGGCTTATAAGAGTGTTTTCCTATTGTT-TTCAGTGT---AGGACTCACTGTTCTAA 226 784s 784s Target: 47265 ATTA----GATA---A--GATAAAGCTAAAAGTTTAAACAAGTTATAA---AAAGTTTCT 47312 784s ||*| ||*| | |||***| ||||| |***|*|*||||||*| |*|*|**|| 784s Query: 227 ATAACTGGGACACCCAAGGATTCTG-TAAAA-TGCCATCCAGTTATCATTTATATTCCCT 284 784s 784s Target: 47313 A--T-AAAATTCATCTTGCCA-AAGAA---ATTTTGTCCATGAACATTAAATTACGAAAG 47365 784s | | ||||||||| | || |*|*| |||||*|*| |*||| |||||| |*|*| 784s Query: 285 AACTCAAAATTCAT-T---CACATGTATTCATTTTTTTC-TAAAC---AAATTA-GCATG 335 784s 784s Target: 47366 GTATTATATGTTTTTTTGGT--AAATTAAGCATTTAAATAATAGCACAACAAGGTA---- 47419 784s ||*| *||*|||| |||||**|| ||||*|||*|**|||| 784s Query: 336 ----TAGA----ATTCTGGTTAAAATTTGGC---------ATAGAACACCCGGGTATTTT 378 784s 784s Target: 47420 CTCTTAAGGCAC----TAATCTGCTCTTTAGCAAAATTTGTAAA--GTG--TTATAAACG 47471 784s *||*|||*|||| ||| ||| ||*|| ||**|*|||**|| ||| |||**||*| 784s Query: 379 TTCATAATGCACCCAATAA-CTG-TCATT--CACTAATTGAGAATGGTGATTTAACAAAG 434 784s 784s Target: 47472 GGTTTTACTTTTGTAAATTTTTTGAAACAATTGTGGCAAAA------TAAATAACATGGT 47525 784s | | |**|||| *||*||||||*|*||***||||| |***|||| |||| 784s Query: 435 G-----A---TAATAAA-GTTATGAAACCAATGCCACAAAACATCTGTCTCTAAC-TGGT 484 784s 784s Target: 47526 AATCTG-GAAT-TCTATTTCATAACATCAAGTGT-TTTAA-------ACCTCTAACATTT 47575 784s *|*|| |**| |*|*|*| *| *| |||| |*||| |*****||*|||| 784s Query: 485 -GTGTGTGTGTGTGTGTGT-GT---GT---GTGTGTGTAAGAGGGAGAGAGAGAAAATTT 536 784s 784s Target: 47576 C-TTC---CCA-AAATCAAAC----TTCAGTTTCAAAATTGT--CTTTCCT---CGTGC- 47620 784s | *|| ||| |||||**|| ||| *|||| ||*| ||||||| |*||| 784s Query: 537 CACTCCCTCCATAAATCTCACAGTATTC-TTTTC----TTTTTCCTTTCCTTTCCTTGCT 591 784s 784s Target: 47621 CTGACTTT-TGAATGCTACAGAGGGC---CCCTGGAGTATCC-------AAAAGAGAGGT 47669 784s || *|||| | || |**|**|| ||*|**| |*||| ||||||*|**| 784s Query: 592 CT-TCTTTCT-----CT-CCTATTGCTTTCCTTTCA-TTTCCTTCTCATAAAAGAAAAAT 643 784s 784s Target: 47670 AAACTGGATTATTTGACATATTTAGTTACATGGGATTGCCAATCTTCTTTAGGTTATAT- 47728 784s ||| |*|||***|*|||***|**||*| |||*|*|||*||| |||| |||| 784s Query: 644 -AAC---AATATAGAAAATAACAAAATATA---GATGGTCAACCTT-TTTA----ATATT 691 784s 784s Target: 47729 -AGGTTA--TATTTTG--AT-----AAA-T-ATTCTATAGGTTATATTTTGATAAATGAT 47776 784s |||||| ||***|| || ||| | *||||*||| |*||**||||**|| || 784s Query: 692 AAGGTTACCTAAAATGCCATTATCCAAAGTGGTTCTCTAG---AGATGCTGATGTAT-AT 747 784s 784s Target: 47777 ACTAATATATGTTCCAAAATTGTATGAGATTTCTAATGTCTGAGTATATGCTATCAAAAT 47836 784s |||*|*||||*|| |*|*|||| |||*||| ***|||||||| || || 784s Query: 748 ACTTACATATTTT---ACAGTGTA------TTCAAAT-AAAGAGTATAT--TA-CA---- 790 784s 784s Target: 47837 TAAG--GTTT--TTATGT---TAAGTTATTGT-A--AAC----CACAGAGA-TT---ATC 47878 784s |||| *|*| ||*||| *||*|| |||| | ||| *||*| || || |*| 784s Query: 791 TAAGACATATCCTTTTGTAACCAACTT-TTGTCATTAACAATTTACTG-GACTTGTCAAC 848 784s 784s Target: 47879 AAACTTCTTTGTCAACTGTGTTTCTGACTATAA---CTACCCTGGACATTTTGTTATTCA 47935 784s |||| || ||*|*|||*|| |*|||||| |||| |**|||||||*||| 784s Query: 849 AAAC--CT-----AAATCTGTATC-GTCTATAATGGCTAC---GTTCATTTTGGTAT--- 894 784s 784s Target: 47936 AAGACAATTGTCTTGTTTAGATCCTTTTCAAGAGATAGTTTATAAGA--AGCTACAGAAC 47993 784s || | ||||**|| |*||*|||| *| *||**|||| |*|| **|| ||*| 784s Query: 895 --GA-A----TCTTAATT--ACCCCTTTC-TG-CATTATTTA-ATGATTTTCT-CATA-- 939 784s 784s Target: 47994 TGTGACAGGTGCTCTCAAATGCAGTTTTCCAA---ATAACTTTGGAGATCATGACAT--T 48048 784s ||| || ||||*|||||*| *|||*|| *|*||||| | |||*|||| | 784s Query: 940 TGT--CA----CTCTTAAATGTA--CTTCTAATTTTTCACTTT--A---CATCACATAAT 986 784s 784s Target: 48049 GAA---AT--AAAGTA 48059 784s ||| || ||| || 784s Query: 987 GAATGGATCCAAA-TA 1001 784s 784s target_name: chr5 784s query_name: chr1 784s optimal_alignment_score: 230 suboptimal_alignment_score: 199 strand: + target_begin: 8806 target_end: 9723 query_begin: 11 query_end: 974 784s 784s Target: 8806 AATGGCCAGGGCACTGAGGAG-CTGTGGAAGAACTGGGGAAATCACCGAAACCCAGTAC- 8863 784s |||*||||*|*|| | ||*|| *|*|*||***||| *|*||*| |*| |**|||*||| 784s Query: 11 AATCGCCACGACA-T-AGTAGTATTTAGAGTTACT--AGTAAGC-CTG-ATGCCACTACA 64 784s 784s Target: 8864 CATTTCAGTGAGGCCATTCTC--CA--AAAACTCTCTC---CA-TCTTATTTCTT---G- 8911 784s ||*||| | | ||**||||| *| |**|*|*|*|| || ||||||*|||| | 784s Query: 65 CAATTC--T-A-GCTTTTCTCTTTAGGATGATTGTTTCATTCAGTCTTATCTCTTTTAGA 120 784s 784s Target: 8912 ------GGGAAAGAGTTCTTCTACT--TACAATATGAT---CAACCTGA--TTAAG---A 8955 784s *|||||*|*||*|| ||*| ||*|||*|*|| |||**||| *||*| * 784s Query: 121 AAACATAGGAAAAAATTATT-TAATAATAAAATTTAATTGGCAAAATGAAGGTATGGCTT 179 784s 784s Target: 8956 AT-ATATTGGTTT-CTATAACTGTGATGCAGATTATAACTATACAAATGCCAATTACCAG 9013 784s || |*|*||*||| |||| ||| *|*|||**||**||| | |*|| || |*|* 784s Query: 180 ATAAGAGTGTTTTCCTAT---TGT-TTTCAGTGTAGGACT---C-ACTG----TT-CTAA 226 784s 784s Target: 9014 A-AGCTAAGCCACCC--TGATTC--CAAAAT---AT--AGTCTCACATTTCATGGTTTCC 9063 784s | |*||**|*||||| *||||| *||||| || ||| |**||||| || *|||| 784s Query: 227 ATAACTGGGACACCCAAGGATTCTGTAAAATGCCATCCAGT-TATCATTT-AT--ATTCC 282 784s 784s Target: 9064 TGGTA--TCAGAAATCCCTATGAGCCTG-A--GATTTTTTCCCTTAA-------AGCA-- 9109 784s *|| ||| ||||*|*| |*| |*|| | *|||||||*| ||| |||| 784s Query: 283 --CTAACTCA-AAATTCAT-TCA-CATGTATTCATTTTTTTC--TAAACAAATTAGCATG 335 784s 784s Target: 9110 ---AATACTG---AAGAT-----A-AGAA-ACC----AATTAATTTCATTGTTGC----- 9147 784s |||*||| ||*|| | |||| ||| *||| *||||| |**||| 784s Query: 336 TAGAATTCTGGTTAAAATTTGGCATAGAACACCCGGGTATT-TTTTCA-TAATGCACCCA 393 784s 784s Target: 9148 -TATCTTGT-AT---CCAATGGCATAA----AATCTATACTAACTTGATTAGAAA-TTCT 9197 784s ||*| ||| || |*|||*| |*|| *||*|| ||*|| *|||*|*||| ||*| 784s Query: 394 ATAAC-TGTCATTCACTAATTG-AGAATGGTGATTTA-ACAAA--GGATAATAAAGTTAT 448 784s 784s Target: 9198 G---CCAATG------AACAACT-T---TA--T--TGT-TTTGAGTGATG---------- 9229 784s | |||||| ||||*|| | || | ||| |*||*||| || 784s Query: 449 GAAACCAATGCCACAAAACATCTGTCTCTAACTGGTGTGTGTGTGTG-TGTGTGTGTGTG 507 784s 784s Target: 9230 -------AAGCCCCATTTGAGA-ATATAGGCTCAATGGCCTTGC-----TCT-----TA- 9270 784s |||****| |||| |*|*|***|||*| ||*|*| ||| || 784s Query: 508 TGTGTGTAAGAGGGA---GAGAGAGAAAATTTCACT--CCCTCCATAAATCTCACAGTAT 562 784s 784s Target: 9271 ACTGTTCTCTATGCAGTCACTTTCTTCTGCACTAAAGTGCCAATACAGATACTG-AATAC 9329 784s *||*||||*|*|*|**|| |||||*| |||*|| **|**|**|*| ||*|| **|*| 784s Query: 563 TCTTTTCTTTTTCCTTTC-CTTTCCT-TGCTCT--TCTTTCTCTCC---TATTGCTTTCC 615 784s 784s Target: 9330 ATTGATTTAAAT-ACATAGATATATAAATA--GATAT-TTAAATATGC--AATATATATG 9383 784s *||*||||***| *|||| |*|*|*||||| *|||| **||||| *| ||||||*||| 784s Query: 616 TTTCATTTCCTTCTCATA-AAAGAAAAATAACAATATAGAAAATA-ACAAAATATAGATG 673 784s 784s Target: 9384 G--ATAC---TTTATATATT--GATT---TAAA----CATTTTCC--------TCTCATA 9421 784s | | || |||| ||||| |*|| |||| ||||*||| |||| || 784s Query: 674 GTCA-ACCTTTTTA-ATATTAAGGTTACCTAAAATGCCATTATCCAAAGTGGTTCTC-TA 730 784s 784s Target: 9422 GA-----TGA--AAAATCACTCTAACATGTATTGATGGCTTCACA-AGAAATCATTTACA 9473 784s || ||| *|*|| ||| | ||| |||| || ||| *|*|*|||**||*| 784s Query: 731 GAGATGCTGATGTATAT-ACT-T-ACA--TATT------TT-ACAGTGTATTCAAATAAA 778 784s 784s Target: 9474 GAAAATAATTGCATATGATACAGT--GTTTGTGCCAAAATGTATTCATGGCTTTAAAAAC 9531 784s ||**|| |||*||||*||*|*| | *|||||**|*||*| || ||*|*||||*|| 784s Query: 779 GAGTAT-ATTACATAAGACATA-TCCTTTTGTAACCAACT---TT--TGTCATTAACAA- 830 784s 784s Target: 9532 TTCAGTGGAAATGTCTATTCAGATCCCTAGCCCATTGTTAAATTGGTTTCTGTTTTCTTG 9591 784s ||*|*||||**||||*| || |*|| |||||**||*|| | ||| 784s Query: 831 TTTACTGGACTTGTCAA--CA-AACC------------TAAATCTGTATC-G---TCT-- 869 784s 784s Target: 9592 CTAAGTTTGAGCTGC-TTATAGATGATGGATATTGACCCCTTATAGATGTTGGATATTGA 9650 784s *||| || |||*| || *||**||| || ||| ||*|| | ||| | 784s Query: 870 ATAA---TG-GCTACGTT---CATTTTGG-TA-TGA----------ATCTT--A-ATT-A 906 784s 784s Target: 9651 CCCC-TTGTGGATGTATGGCCGGTGCTTTTCCCAGTATTTAGGTCATCTCTGCA---CAC 9706 784s |||| ||*||*|| ||| ****||*|||||*|| ||| |||| ||||**| *|| 784s Query: 907 CCCCTTTCTGCAT-TAT--TTAATGATTTTCTCA-TAT----GTCA-CTCTTAAATGTAC 957 784s 784s Target: 9707 TGTTGATTGTTTC-CTTT 9723 784s |**|*||| |||| |||| 784s Query: 958 TTCTAATT-TTTCACTTT 974 784s 784s CPU time: 4.076786 seconds 784s autopkgtest [04:09:05]: test run-example: -----------------------] 785s autopkgtest [04:09:06]: test run-example: - - - - - - - - - - results - - - - - - - - - - 785s run-example PASS 786s autopkgtest [04:09:07]: @@@@@@@@@@@@@@@@@@@@ summary 786s build-lib PASS 786s build-lib-java PASS 786s run-example PASS