0s autopkgtest [18:23:36]: starting date and time: 2026-01-22 18:23:36+0000 0s autopkgtest [18:23:36]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [18:23:36]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.tvsmgj5l/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults --apt-upgrade lefse --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=python3-defaults/3.14.2-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-arm64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@sto01-arm64-11.secgroup --name adt-resolute-arm64-lefse-20260122-182336-juju-7f2275-prod-proposed-migration-environment-2-24d96a1f-25ed-45e1-99c3-eca3a8b67939 --image adt/ubuntu-resolute-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-autopkgtest-workers-arm64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 4s Creating nova instance adt-resolute-arm64-lefse-20260122-182336-juju-7f2275-prod-proposed-migration-environment-2-24d96a1f-25ed-45e1-99c3-eca3a8b67939 from image adt/ubuntu-resolute-arm64-server-20260122.img (UUID ed27afc7-5f46-4e8b-ad73-864280a0ddbb)... 57s autopkgtest [18:24:33]: testbed dpkg architecture: arm64 58s autopkgtest [18:24:34]: testbed apt version: 3.1.12 58s autopkgtest [18:24:34]: @@@@@@@@@@@@@@@@@@@@ test bed setup 58s autopkgtest [18:24:34]: testbed release detected to be: None 59s autopkgtest [18:24:35]: updating testbed package index (apt update) 59s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 59s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 59s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 59s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 59s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [80.9 kB] 59s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [2820 B] 59s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [19.2 kB] 59s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [815 kB] 60s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 Packages [103 kB] 60s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 c-n-f Metadata [3316 B] 60s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 Packages [7876 B] 60s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 c-n-f Metadata [120 B] 60s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 Packages [639 kB] 60s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 c-n-f Metadata [16.2 kB] 60s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 Packages [4636 B] 60s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 c-n-f Metadata [460 B] 63s Fetched 1818 kB in 1s (1931 kB/s) 63s Reading package lists... 64s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 64s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 64s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 64s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 65s Reading package lists... 65s Reading package lists... 66s Building dependency tree... 66s Reading state information... 66s Calculating upgrade... 66s The following packages were automatically installed and are no longer required: 66s python3.13 python3.13-minimal 66s Use 'sudo apt autoremove' to remove them. 66s The following NEW packages will be installed: 66s libpython3.14-minimal libpython3.14-stdlib python3.14 python3.14-minimal 66s The following packages will be upgraded: 66s libpython3-stdlib python3 python3-gdbm python3-minimal 67s 4 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. 67s Need to get 6705 kB of archives. 67s After this operation, 26.0 MB of additional disk space will be used. 67s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 libpython3.14-minimal arm64 3.14.2-1 [917 kB] 67s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 python3.14-minimal arm64 3.14.2-1 [2548 kB] 67s Get:3 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 python3-gdbm arm64 3.14.2-1 [11.1 kB] 67s Get:4 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 python3-minimal arm64 3.14.2-1 [28.2 kB] 67s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 python3 arm64 3.14.2-1 [22.9 kB] 67s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 libpython3.14-stdlib arm64 3.14.2-1 [2351 kB] 68s Get:7 http://ftpmaster.internal/ubuntu resolute/main arm64 python3.14 arm64 3.14.2-1 [816 kB] 68s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 libpython3-stdlib arm64 3.14.2-1 [10.9 kB] 68s dpkg-preconfigure: unable to re-open stdin: No such file or directory 68s Fetched 6705 kB in 1s (4571 kB/s) 68s Selecting previously unselected package libpython3.14-minimal:arm64. 68s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 135223 files and directories currently installed.) 68s Preparing to unpack .../libpython3.14-minimal_3.14.2-1_arm64.deb ... 68s Unpacking libpython3.14-minimal:arm64 (3.14.2-1) ... 69s Selecting previously unselected package python3.14-minimal. 69s Preparing to unpack .../python3.14-minimal_3.14.2-1_arm64.deb ... 69s Unpacking python3.14-minimal (3.14.2-1) ... 69s Preparing to unpack .../python3-gdbm_3.14.2-1_arm64.deb ... 69s Unpacking python3-gdbm (3.14.2-1) over (3.13.9-1) ... 69s Setting up libpython3.14-minimal:arm64 (3.14.2-1) ... 69s Setting up python3.14-minimal (3.14.2-1) ... 70s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 135565 files and directories currently installed.) 70s Preparing to unpack .../python3-minimal_3.14.2-1_arm64.deb ... 70s Unpacking python3-minimal (3.14.2-1) over (3.13.7-1) ... 70s Setting up python3-minimal (3.14.2-1) ... 70s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 135565 files and directories currently installed.) 70s Preparing to unpack .../python3_3.14.2-1_arm64.deb ... 71s running python pre-rtupdate hooks for python3.14... 71s Unpacking python3 (3.14.2-1) over (3.13.7-1) ... 71s Selecting previously unselected package libpython3.14-stdlib:arm64. 71s Preparing to unpack .../libpython3.14-stdlib_3.14.2-1_arm64.deb ... 71s Unpacking libpython3.14-stdlib:arm64 (3.14.2-1) ... 71s Selecting previously unselected package python3.14. 71s Preparing to unpack .../python3.14_3.14.2-1_arm64.deb ... 71s Unpacking python3.14 (3.14.2-1) ... 71s Preparing to unpack .../libpython3-stdlib_3.14.2-1_arm64.deb ... 71s Unpacking libpython3-stdlib:arm64 (3.14.2-1) over (3.13.7-1) ... 71s Setting up libpython3.14-stdlib:arm64 (3.14.2-1) ... 71s Setting up python3.14 (3.14.2-1) ... 72s Setting up libpython3-stdlib:arm64 (3.14.2-1) ... 72s Setting up python3-gdbm (3.14.2-1) ... 72s Setting up python3 (3.14.2-1) ... 72s running python rtupdate hooks for python3.14... 72s running python post-rtupdate hooks for python3.14... 72s Processing triggers for man-db (2.13.1-1) ... 73s Processing triggers for systemd (259-1ubuntu2) ... 73s autopkgtest [18:24:49]: upgrading testbed (apt dist-upgrade and autopurge) 73s Reading package lists... 74s Building dependency tree... 74s Reading state information... 74s Calculating upgrade... 74s The following packages were automatically installed and are no longer required: 74s python3.13 python3.13-minimal 74s Use 'sudo apt autoremove' to remove them. 74s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 75s Reading package lists... 75s Building dependency tree... 75s Reading state information... 75s Solving dependencies... 75s The following packages will be REMOVED: 75s python3.13* python3.13-minimal* 76s 0 upgraded, 0 newly installed, 2 to remove and 0 not upgraded. 76s After this operation, 7766 kB disk space will be freed. 76s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 135995 files and directories currently installed.) 76s Removing python3.13 (3.13.11-1) ... 76s Removing python3.13-minimal (3.13.11-1) ... 77s Processing triggers for man-db (2.13.1-1) ... 77s Processing triggers for systemd (259-1ubuntu2) ... 77s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 135968 files and directories currently installed.) 77s Purging configuration files for python3.13-minimal (3.13.11-1) ... 80s autopkgtest [18:24:56]: testbed running kernel: Linux 6.18.0-9-generic #9-Ubuntu SMP PREEMPT_DYNAMIC Mon Jan 12 16:41:39 UTC 2026 80s autopkgtest [18:24:56]: @@@@@@@@@@@@@@@@@@@@ apt-source lefse 82s Get:1 http://ftpmaster.internal/ubuntu resolute/universe lefse 1.1.2-2 (dsc) [1944 B] 82s Get:2 http://ftpmaster.internal/ubuntu resolute/universe lefse 1.1.2-2 (tar) [64.1 kB] 82s Get:3 http://ftpmaster.internal/ubuntu resolute/universe lefse 1.1.2-2 (diff) [12.9 kB] 82s gpgv: Signature made Wed Dec 4 19:15:55 2024 UTC 82s gpgv: using RSA key 52D5BD0E7D4DB084E34B5865D4A41CFADDB20DB5 82s gpgv: Can't check signature: No public key 82s dpkg-source: warning: cannot verify inline signature for ./lefse_1.1.2-2.dsc: no acceptable signature found 83s autopkgtest [18:24:59]: testing package lefse version 1.1.2-2 83s autopkgtest [18:24:59]: build not needed 83s autopkgtest [18:24:59]: test run-unit-test: preparing testbed 83s Reading package lists... 84s Building dependency tree... 84s Reading state information... 84s Solving dependencies... 84s The following NEW packages will be installed: 84s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lyx 84s lefse libaec0 libblas3 libcairo2 libdatrie1 libdeflate0 libfontconfig1 84s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhdf5-310 84s libhdf5-hl-310 libice6 libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 84s liblapack3 liblcms2-2 liblerc4 liblzf1 libopenjp2-7 libpango-1.0-0 84s libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libpixman-1-0 84s libqhull-r8.0 libraqm0 libsharpyuv0 libsm6 libsz2 libtcl8.6 libthai-data 84s libthai0 libtiff6 libtk8.6 libwebp7 libwebpdemux2 libwebpmux3 libxcb-render0 84s libxcb-shm0 libxft2 libxrender1 libxslt1.1 libxss1 libxt6t64 libzopfli1 84s python-matplotlib-data python3-biom-format python3-brotli python3-click 84s python3-contourpy python3-cycler python3-decorator python3-fonttools 84s python3-h5py python3-h5py-serial python3-kiwisolver python3-lxml python3-lz4 84s python3-matplotlib python3-mpmath python3-numpy python3-numpy-dev 84s python3-pandas python3-pandas-lib python3-pil python3-pil.imagetk 84s python3-pytz python3-rpy2 python3-scipy python3-sympy python3-tk 84s python3-tzlocal python3-ufolib2 python3-unicodedata2 python3-zopfli 84s python3.13-tk python3.14-tk r-base-core r-cran-codetools r-cran-coin 84s r-cran-lattice r-cran-libcoin r-cran-mass r-cran-matrix r-cran-matrixstats 84s r-cran-modeltools r-cran-multcomp r-cran-mvtnorm r-cran-sandwich 84s r-cran-survival r-cran-th.data r-cran-zoo unicode-data unzip x11-common 84s xdg-utils zip 84s 0 upgraded, 107 newly installed, 0 to remove and 0 not upgraded. 84s Need to get 146 MB of archives. 84s After this operation, 504 MB of additional disk space will be used. 84s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-numpy-dev arm64 1:2.3.5+ds-3 [366 kB] 84s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 libblas3 arm64 3.12.1-7ubuntu1 [181 kB] 84s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 libgfortran5 arm64 15.2.0-11ubuntu1 [450 kB] 84s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 liblapack3 arm64 3.12.1-7ubuntu1 [2299 kB] 85s Get:5 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-numpy arm64 1:2.3.5+ds-3 [4569 kB] 85s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-mono all 2.37-8build1 [502 kB] 85s Get:7 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-core all 2.37-8build1 [834 kB] 85s Get:8 http://ftpmaster.internal/ubuntu resolute/main arm64 fontconfig-config arm64 2.15.0-2.4ubuntu1 [38.2 kB] 85s Get:9 http://ftpmaster.internal/ubuntu resolute/main arm64 libfontconfig1 arm64 2.15.0-2.4ubuntu1 [143 kB] 85s Get:10 http://ftpmaster.internal/ubuntu resolute/main arm64 fontconfig arm64 2.15.0-2.4ubuntu1 [191 kB] 85s Get:11 http://ftpmaster.internal/ubuntu resolute/universe arm64 fonts-lyx all 2.5.0~RC2-3 [171 kB] 85s Get:12 http://ftpmaster.internal/ubuntu resolute/universe arm64 libaec0 arm64 1.1.4-2 [22.2 kB] 85s Get:13 http://ftpmaster.internal/ubuntu resolute/universe arm64 libsz2 arm64 1.1.4-2 [5258 B] 85s Get:14 http://ftpmaster.internal/ubuntu resolute/universe arm64 libhdf5-310 arm64 1.14.5+repack-4 [1286 kB] 85s Get:15 http://ftpmaster.internal/ubuntu resolute/universe arm64 libhdf5-hl-310 arm64 1.14.5+repack-4 [58.9 kB] 85s Get:16 http://ftpmaster.internal/ubuntu resolute/universe arm64 liblzf1 arm64 3.6-4build1 [7330 B] 85s Get:17 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-h5py-serial arm64 3.15.1-4 [1483 kB] 85s Get:18 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-h5py all 3.15.1-4 [11.3 kB] 85s Get:19 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-click all 8.2.0+0.really.8.1.8-1build1 [80.2 kB] 85s Get:20 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pytz all 2025.2-5 [32.4 kB] 85s Get:21 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pandas-lib arm64 2.3.3+dfsg-3 [6290 kB] 85s Get:22 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pandas all 2.3.3+dfsg-3 [2948 kB] 85s Get:23 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-decorator all 5.2.1-2 [28.1 kB] 85s Get:24 http://ftpmaster.internal/ubuntu resolute/universe arm64 libqhull-r8.0 arm64 2020.2-8 [191 kB] 85s Get:25 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-scipy arm64 1.16.3-3 [17.4 MB] 85s Get:26 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-biom-format arm64 2.1.17-1 [211 kB] 85s Get:27 http://ftpmaster.internal/ubuntu resolute/universe arm64 python-matplotlib-data all 3.10.7+dfsg1-1 [2930 kB] 85s Get:28 http://ftpmaster.internal/ubuntu resolute/main arm64 libgomp1 arm64 15.2.0-11ubuntu1 [147 kB] 85s Get:29 http://ftpmaster.internal/ubuntu resolute/main arm64 libimagequant0 arm64 2.18.0-1build1 [37.1 kB] 85s Get:30 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg-turbo8 arm64 2.1.5-4ubuntu2 [165 kB] 85s Get:31 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 85s Get:32 http://ftpmaster.internal/ubuntu resolute/main arm64 liblcms2-2 arm64 2.17-1 [170 kB] 85s Get:33 http://ftpmaster.internal/ubuntu resolute/main arm64 libopenjp2-7 arm64 2.5.4-1 [180 kB] 85s Get:34 http://ftpmaster.internal/ubuntu resolute/main arm64 libgraphite2-3 arm64 1.3.14-11ubuntu1 [72.1 kB] 85s Get:35 http://ftpmaster.internal/ubuntu resolute/main arm64 libharfbuzz0b arm64 12.3.0-4 [518 kB] 85s Get:36 http://ftpmaster.internal/ubuntu resolute/main arm64 libraqm0 arm64 0.10.3-1 [15.0 kB] 85s Get:37 http://ftpmaster.internal/ubuntu resolute/main arm64 libdeflate0 arm64 1.23-2 [46.4 kB] 85s Get:38 http://ftpmaster.internal/ubuntu resolute/main arm64 libjbig0 arm64 2.1-6.1ubuntu3 [29.2 kB] 85s Get:39 http://ftpmaster.internal/ubuntu resolute/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu2 [174 kB] 85s Get:40 http://ftpmaster.internal/ubuntu resolute/main arm64 libsharpyuv0 arm64 1.5.0-0.1build1 [16.7 kB] 85s Get:41 http://ftpmaster.internal/ubuntu resolute/main arm64 libwebp7 arm64 1.5.0-0.1build1 [205 kB] 85s Get:42 http://ftpmaster.internal/ubuntu resolute/main arm64 libtiff6 arm64 4.7.0-3ubuntu3 [196 kB] 85s Get:43 http://ftpmaster.internal/ubuntu resolute/main arm64 libwebpdemux2 arm64 1.5.0-0.1build1 [12.5 kB] 85s Get:44 http://ftpmaster.internal/ubuntu resolute/main arm64 libwebpmux3 arm64 1.5.0-0.1build1 [25.2 kB] 85s Get:45 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-pil arm64 12.0.0-1ubuntu1 [486 kB] 85s Get:46 http://ftpmaster.internal/ubuntu resolute/main arm64 libtcl8.6 arm64 8.6.17+dfsg-1 [1024 kB] 85s Get:47 http://ftpmaster.internal/ubuntu resolute/main arm64 libxrender1 arm64 1:0.9.12-1 [19.5 kB] 85s Get:48 http://ftpmaster.internal/ubuntu resolute/main arm64 libxft2 arm64 2.3.6-1build2 [43.2 kB] 85s Get:49 http://ftpmaster.internal/ubuntu resolute/main arm64 x11-common all 1:7.7+24ubuntu1 [22.4 kB] 85s Get:50 http://ftpmaster.internal/ubuntu resolute/main arm64 libxss1 arm64 1:1.2.3-1build4 [7102 B] 85s Get:51 http://ftpmaster.internal/ubuntu resolute/main arm64 libtk8.6 arm64 8.6.17-1 [811 kB] 85s Get:52 http://ftpmaster.internal/ubuntu resolute/main arm64 python3.13-tk arm64 3.13.11-1 [106 kB] 85s Get:53 http://ftpmaster.internal/ubuntu resolute/main arm64 python3.14-tk arm64 3.14.2-1 [108 kB] 85s Get:54 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 python3-tk arm64 3.14.2-1 [11.2 kB] 85s Get:55 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pil.imagetk arm64 12.0.0-1ubuntu1 [9532 B] 85s Get:56 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-contourpy arm64 1.3.3-1 [245 kB] 85s Get:57 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-cycler all 0.12.1-2 [9850 B] 85s Get:58 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-brotli arm64 1.1.0-2build6 [343 kB] 85s Get:59 http://ftpmaster.internal/ubuntu resolute/main arm64 libxslt1.1 arm64 1.1.43-0.3 [172 kB] 86s Get:60 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-lxml arm64 6.0.2-1 [2155 kB] 86s Get:61 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-lz4 arm64 4.4.5+dfsg-1 [27.9 kB] 86s Get:62 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-mpmath all 1.3.0-2 [423 kB] 86s Get:63 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-sympy all 1.14.0-2 [4306 kB] 86s Get:64 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-ufolib2 all 0.18.1+dfsg1-1 [33.7 kB] 86s Get:65 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-unicodedata2 arm64 16.0.0+ds-1build1 [398 kB] 86s Get:66 http://ftpmaster.internal/ubuntu resolute/universe arm64 libzopfli1 arm64 1.0.3-3 [108 kB] 86s Get:67 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-zopfli arm64 0.4.0-1 [10.8 kB] 86s Get:68 http://ftpmaster.internal/ubuntu resolute/universe arm64 unicode-data all 16.0.0-1build1 [9543 kB] 86s Get:69 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-fonttools arm64 4.61.1-3 [1680 kB] 86s Get:70 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-kiwisolver arm64 1.4.10~rc0-1 [60.1 kB] 86s Get:71 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-matplotlib arm64 3.10.7+dfsg1-1 [17.1 MB] 86s Get:72 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-tzlocal all 5.3.1-2 [20.8 kB] 86s Get:73 http://ftpmaster.internal/ubuntu resolute/main arm64 zip arm64 3.0-15ubuntu2 [175 kB] 86s Get:74 http://ftpmaster.internal/ubuntu resolute/main arm64 unzip arm64 6.0-29ubuntu1 [176 kB] 86s Get:75 http://ftpmaster.internal/ubuntu resolute/main arm64 libpaper2 arm64 2.2.5-0.3build1 [17.3 kB] 86s Get:76 http://ftpmaster.internal/ubuntu resolute/main arm64 libpaper-utils arm64 2.2.5-0.3build1 [15.4 kB] 86s Get:77 http://ftpmaster.internal/ubuntu resolute/main arm64 xdg-utils all 1.2.1-2ubuntu2 [66.1 kB] 86s Get:78 http://ftpmaster.internal/ubuntu resolute/main arm64 libpixman-1-0 arm64 0.46.4-1 [204 kB] 86s Get:79 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-render0 arm64 1.17.0-2build1 [18.1 kB] 86s Get:80 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-shm0 arm64 1.17.0-2build1 [6234 B] 86s Get:81 http://ftpmaster.internal/ubuntu resolute/main arm64 libcairo2 arm64 1.18.4-3 [556 kB] 86s Get:82 http://ftpmaster.internal/ubuntu resolute/main arm64 libthai-data all 0.1.30-1 [155 kB] 86s Get:83 http://ftpmaster.internal/ubuntu resolute/main arm64 libdatrie1 arm64 0.2.14-1 [19.6 kB] 86s Get:84 http://ftpmaster.internal/ubuntu resolute/main arm64 libthai0 arm64 0.1.30-1 [18.3 kB] 86s Get:85 http://ftpmaster.internal/ubuntu resolute/main arm64 libpango-1.0-0 arm64 1.56.4-1 [237 kB] 86s Get:86 http://ftpmaster.internal/ubuntu resolute/main arm64 libpangoft2-1.0-0 arm64 1.56.4-1 [51.4 kB] 86s Get:87 http://ftpmaster.internal/ubuntu resolute/main arm64 libpangocairo-1.0-0 arm64 1.56.4-1 [27.9 kB] 86s Get:88 http://ftpmaster.internal/ubuntu resolute/main arm64 libice6 arm64 2:1.1.1-1build1 [43.0 kB] 86s Get:89 http://ftpmaster.internal/ubuntu resolute/main arm64 libsm6 arm64 2:1.2.6-1 [16.6 kB] 86s Get:90 http://ftpmaster.internal/ubuntu resolute/main arm64 libxt6t64 arm64 1:1.2.1-1.3 [168 kB] 86s Get:91 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-base-core arm64 4.5.2-1ubuntu2 [28.6 MB] 87s Get:92 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-rpy2 arm64 3.6.4-2 [219 kB] 87s Get:93 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-lattice arm64 0.22-7-1 [1365 kB] 87s Get:94 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-matrix arm64 1.7-4-1 [4146 kB] 87s Get:95 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-survival arm64 3.8-3-1 [8213 kB] 87s Get:96 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-mvtnorm arm64 1.3-3-1 [921 kB] 87s Get:97 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-libcoin arm64 1.0-10-1 [766 kB] 87s Get:98 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-matrixstats arm64 1.5.0-1 [496 kB] 87s Get:99 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-modeltools all 0.2-24-1 [224 kB] 87s Get:100 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-mass arm64 7.3-65-1 [1109 kB] 87s Get:101 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-th.data all 1.1-5-1 [8740 kB] 87s Get:102 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-zoo arm64 1.8-15-1 [1025 kB] 87s Get:103 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-sandwich all 3.1-1-1 [1483 kB] 88s Get:104 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-codetools all 0.2-20-1build1 [91.1 kB] 88s Get:105 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-multcomp all 1.4-29-1 [617 kB] 88s Get:106 http://ftpmaster.internal/ubuntu resolute/universe arm64 r-cran-coin arm64 1.4-3-1 [1559 kB] 88s Get:107 http://ftpmaster.internal/ubuntu resolute/universe arm64 lefse all 1.1.2-2 [58.1 kB] 88s Preconfiguring packages ... 88s Fetched 146 MB in 4s (40.6 MB/s) 88s Selecting previously unselected package python3-numpy-dev:arm64. 88s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 135970 files and directories currently installed.) 88s Preparing to unpack .../000-python3-numpy-dev_1%3a2.3.5+ds-3_arm64.deb ... 88s Unpacking python3-numpy-dev:arm64 (1:2.3.5+ds-3) ... 88s Selecting previously unselected package libblas3:arm64. 88s Preparing to unpack .../001-libblas3_3.12.1-7ubuntu1_arm64.deb ... 88s Unpacking libblas3:arm64 (3.12.1-7ubuntu1) ... 88s Selecting previously unselected package libgfortran5:arm64. 88s Preparing to unpack .../002-libgfortran5_15.2.0-11ubuntu1_arm64.deb ... 88s Unpacking libgfortran5:arm64 (15.2.0-11ubuntu1) ... 88s Selecting previously unselected package liblapack3:arm64. 88s Preparing to unpack .../003-liblapack3_3.12.1-7ubuntu1_arm64.deb ... 88s Unpacking liblapack3:arm64 (3.12.1-7ubuntu1) ... 88s Selecting previously unselected package python3-numpy. 88s Preparing to unpack .../004-python3-numpy_1%3a2.3.5+ds-3_arm64.deb ... 89s Unpacking python3-numpy (1:2.3.5+ds-3) ... 89s Selecting previously unselected package fonts-dejavu-mono. 89s Preparing to unpack .../005-fonts-dejavu-mono_2.37-8build1_all.deb ... 89s Unpacking fonts-dejavu-mono (2.37-8build1) ... 89s Selecting previously unselected package fonts-dejavu-core. 89s Preparing to unpack .../006-fonts-dejavu-core_2.37-8build1_all.deb ... 89s Unpacking fonts-dejavu-core (2.37-8build1) ... 89s Selecting previously unselected package fontconfig-config. 89s Preparing to unpack .../007-fontconfig-config_2.15.0-2.4ubuntu1_arm64.deb ... 89s Unpacking fontconfig-config (2.15.0-2.4ubuntu1) ... 89s Selecting previously unselected package libfontconfig1:arm64. 89s Preparing to unpack .../008-libfontconfig1_2.15.0-2.4ubuntu1_arm64.deb ... 89s Unpacking libfontconfig1:arm64 (2.15.0-2.4ubuntu1) ... 89s Selecting previously unselected package fontconfig. 89s Preparing to unpack .../009-fontconfig_2.15.0-2.4ubuntu1_arm64.deb ... 89s Unpacking fontconfig (2.15.0-2.4ubuntu1) ... 89s Selecting previously unselected package fonts-lyx. 89s Preparing to unpack .../010-fonts-lyx_2.5.0~RC2-3_all.deb ... 89s Unpacking fonts-lyx (2.5.0~RC2-3) ... 89s Selecting previously unselected package libaec0:arm64. 89s Preparing to unpack .../011-libaec0_1.1.4-2_arm64.deb ... 89s Unpacking libaec0:arm64 (1.1.4-2) ... 89s Selecting previously unselected package libsz2:arm64. 89s Preparing to unpack .../012-libsz2_1.1.4-2_arm64.deb ... 89s Unpacking libsz2:arm64 (1.1.4-2) ... 89s Selecting previously unselected package libhdf5-310:arm64. 89s Preparing to unpack .../013-libhdf5-310_1.14.5+repack-4_arm64.deb ... 89s Unpacking libhdf5-310:arm64 (1.14.5+repack-4) ... 89s Selecting previously unselected package libhdf5-hl-310:arm64. 89s Preparing to unpack .../014-libhdf5-hl-310_1.14.5+repack-4_arm64.deb ... 89s Unpacking libhdf5-hl-310:arm64 (1.14.5+repack-4) ... 89s Selecting previously unselected package liblzf1:arm64. 89s Preparing to unpack .../015-liblzf1_3.6-4build1_arm64.deb ... 89s Unpacking liblzf1:arm64 (3.6-4build1) ... 90s Selecting previously unselected package python3-h5py-serial. 90s Preparing to unpack .../016-python3-h5py-serial_3.15.1-4_arm64.deb ... 90s Unpacking python3-h5py-serial (3.15.1-4) ... 90s Selecting previously unselected package python3-h5py. 90s Preparing to unpack .../017-python3-h5py_3.15.1-4_all.deb ... 90s Unpacking python3-h5py (3.15.1-4) ... 90s Selecting previously unselected package python3-click. 90s Preparing to unpack .../018-python3-click_8.2.0+0.really.8.1.8-1build1_all.deb ... 90s Unpacking python3-click (8.2.0+0.really.8.1.8-1build1) ... 90s Selecting previously unselected package python3-pytz. 90s Preparing to unpack .../019-python3-pytz_2025.2-5_all.deb ... 90s Unpacking python3-pytz (2025.2-5) ... 90s Selecting previously unselected package python3-pandas-lib:arm64. 90s Preparing to unpack .../020-python3-pandas-lib_2.3.3+dfsg-3_arm64.deb ... 90s Unpacking python3-pandas-lib:arm64 (2.3.3+dfsg-3) ... 90s Selecting previously unselected package python3-pandas. 90s Preparing to unpack .../021-python3-pandas_2.3.3+dfsg-3_all.deb ... 90s Unpacking python3-pandas (2.3.3+dfsg-3) ... 90s Selecting previously unselected package python3-decorator. 90s Preparing to unpack .../022-python3-decorator_5.2.1-2_all.deb ... 90s Unpacking python3-decorator (5.2.1-2) ... 90s Selecting previously unselected package libqhull-r8.0:arm64. 90s Preparing to unpack .../023-libqhull-r8.0_2020.2-8_arm64.deb ... 90s Unpacking libqhull-r8.0:arm64 (2020.2-8) ... 90s Selecting previously unselected package python3-scipy. 90s Preparing to unpack .../024-python3-scipy_1.16.3-3_arm64.deb ... 90s Unpacking python3-scipy (1.16.3-3) ... 91s Selecting previously unselected package python3-biom-format. 91s Preparing to unpack .../025-python3-biom-format_2.1.17-1_arm64.deb ... 91s Unpacking python3-biom-format (2.1.17-1) ... 91s Selecting previously unselected package python-matplotlib-data. 91s Preparing to unpack .../026-python-matplotlib-data_3.10.7+dfsg1-1_all.deb ... 91s Unpacking python-matplotlib-data (3.10.7+dfsg1-1) ... 91s Selecting previously unselected package libgomp1:arm64. 91s Preparing to unpack .../027-libgomp1_15.2.0-11ubuntu1_arm64.deb ... 91s Unpacking libgomp1:arm64 (15.2.0-11ubuntu1) ... 91s Selecting previously unselected package libimagequant0:arm64. 91s Preparing to unpack .../028-libimagequant0_2.18.0-1build1_arm64.deb ... 91s Unpacking libimagequant0:arm64 (2.18.0-1build1) ... 91s Selecting previously unselected package libjpeg-turbo8:arm64. 91s Preparing to unpack .../029-libjpeg-turbo8_2.1.5-4ubuntu2_arm64.deb ... 91s Unpacking libjpeg-turbo8:arm64 (2.1.5-4ubuntu2) ... 91s Selecting previously unselected package libjpeg8:arm64. 91s Preparing to unpack .../030-libjpeg8_8c-2ubuntu11_arm64.deb ... 91s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 91s Selecting previously unselected package liblcms2-2:arm64. 91s Preparing to unpack .../031-liblcms2-2_2.17-1_arm64.deb ... 91s Unpacking liblcms2-2:arm64 (2.17-1) ... 91s Selecting previously unselected package libopenjp2-7:arm64. 91s Preparing to unpack .../032-libopenjp2-7_2.5.4-1_arm64.deb ... 91s Unpacking libopenjp2-7:arm64 (2.5.4-1) ... 91s Selecting previously unselected package libgraphite2-3:arm64. 91s Preparing to unpack .../033-libgraphite2-3_1.3.14-11ubuntu1_arm64.deb ... 91s Unpacking libgraphite2-3:arm64 (1.3.14-11ubuntu1) ... 91s Selecting previously unselected package libharfbuzz0b:arm64. 91s Preparing to unpack .../034-libharfbuzz0b_12.3.0-4_arm64.deb ... 91s Unpacking libharfbuzz0b:arm64 (12.3.0-4) ... 91s Selecting previously unselected package libraqm0:arm64. 91s Preparing to unpack .../035-libraqm0_0.10.3-1_arm64.deb ... 91s Unpacking libraqm0:arm64 (0.10.3-1) ... 91s Selecting previously unselected package libdeflate0:arm64. 91s Preparing to unpack .../036-libdeflate0_1.23-2_arm64.deb ... 91s Unpacking libdeflate0:arm64 (1.23-2) ... 91s Selecting previously unselected package libjbig0:arm64. 91s Preparing to unpack .../037-libjbig0_2.1-6.1ubuntu3_arm64.deb ... 91s Unpacking libjbig0:arm64 (2.1-6.1ubuntu3) ... 91s Selecting previously unselected package liblerc4:arm64. 91s Preparing to unpack .../038-liblerc4_4.0.0+ds-5ubuntu2_arm64.deb ... 91s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu2) ... 91s Selecting previously unselected package libsharpyuv0:arm64. 91s Preparing to unpack .../039-libsharpyuv0_1.5.0-0.1build1_arm64.deb ... 91s Unpacking libsharpyuv0:arm64 (1.5.0-0.1build1) ... 91s Selecting previously unselected package libwebp7:arm64. 91s Preparing to unpack .../040-libwebp7_1.5.0-0.1build1_arm64.deb ... 91s Unpacking libwebp7:arm64 (1.5.0-0.1build1) ... 92s Selecting previously unselected package libtiff6:arm64. 92s Preparing to unpack .../041-libtiff6_4.7.0-3ubuntu3_arm64.deb ... 92s Unpacking libtiff6:arm64 (4.7.0-3ubuntu3) ... 92s Selecting previously unselected package libwebpdemux2:arm64. 92s Preparing to unpack .../042-libwebpdemux2_1.5.0-0.1build1_arm64.deb ... 92s Unpacking libwebpdemux2:arm64 (1.5.0-0.1build1) ... 92s Selecting previously unselected package libwebpmux3:arm64. 92s Preparing to unpack .../043-libwebpmux3_1.5.0-0.1build1_arm64.deb ... 92s Unpacking libwebpmux3:arm64 (1.5.0-0.1build1) ... 92s Selecting previously unselected package python3-pil:arm64. 92s Preparing to unpack .../044-python3-pil_12.0.0-1ubuntu1_arm64.deb ... 92s Unpacking python3-pil:arm64 (12.0.0-1ubuntu1) ... 92s Selecting previously unselected package libtcl8.6:arm64. 92s Preparing to unpack .../045-libtcl8.6_8.6.17+dfsg-1_arm64.deb ... 92s Unpacking libtcl8.6:arm64 (8.6.17+dfsg-1) ... 92s Selecting previously unselected package libxrender1:arm64. 92s Preparing to unpack .../046-libxrender1_1%3a0.9.12-1_arm64.deb ... 92s Unpacking libxrender1:arm64 (1:0.9.12-1) ... 92s Selecting previously unselected package libxft2:arm64. 92s Preparing to unpack .../047-libxft2_2.3.6-1build2_arm64.deb ... 92s Unpacking libxft2:arm64 (2.3.6-1build2) ... 92s Selecting previously unselected package x11-common. 92s Preparing to unpack .../048-x11-common_1%3a7.7+24ubuntu1_all.deb ... 92s Unpacking x11-common (1:7.7+24ubuntu1) ... 92s Selecting previously unselected package libxss1:arm64. 92s Preparing to unpack .../049-libxss1_1%3a1.2.3-1build4_arm64.deb ... 92s Unpacking libxss1:arm64 (1:1.2.3-1build4) ... 92s Selecting previously unselected package libtk8.6:arm64. 92s Preparing to unpack .../050-libtk8.6_8.6.17-1_arm64.deb ... 92s Unpacking libtk8.6:arm64 (8.6.17-1) ... 92s Selecting previously unselected package python3.13-tk. 92s Preparing to unpack .../051-python3.13-tk_3.13.11-1_arm64.deb ... 92s Unpacking python3.13-tk (3.13.11-1) ... 92s Selecting previously unselected package python3.14-tk. 92s Preparing to unpack .../052-python3.14-tk_3.14.2-1_arm64.deb ... 92s Unpacking python3.14-tk (3.14.2-1) ... 92s Selecting previously unselected package python3-tk. 92s Preparing to unpack .../053-python3-tk_3.14.2-1_arm64.deb ... 92s Unpacking python3-tk (3.14.2-1) ... 92s Selecting previously unselected package python3-pil.imagetk:arm64. 92s Preparing to unpack .../054-python3-pil.imagetk_12.0.0-1ubuntu1_arm64.deb ... 92s Unpacking python3-pil.imagetk:arm64 (12.0.0-1ubuntu1) ... 92s Selecting previously unselected package python3-contourpy. 92s Preparing to unpack .../055-python3-contourpy_1.3.3-1_arm64.deb ... 92s Unpacking python3-contourpy (1.3.3-1) ... 92s Selecting previously unselected package python3-cycler. 92s Preparing to unpack .../056-python3-cycler_0.12.1-2_all.deb ... 92s Unpacking python3-cycler (0.12.1-2) ... 92s Selecting previously unselected package python3-brotli. 92s Preparing to unpack .../057-python3-brotli_1.1.0-2build6_arm64.deb ... 92s Unpacking python3-brotli (1.1.0-2build6) ... 92s Selecting previously unselected package libxslt1.1:arm64. 92s Preparing to unpack .../058-libxslt1.1_1.1.43-0.3_arm64.deb ... 92s Unpacking libxslt1.1:arm64 (1.1.43-0.3) ... 92s Selecting previously unselected package python3-lxml:arm64. 92s Preparing to unpack .../059-python3-lxml_6.0.2-1_arm64.deb ... 92s Unpacking python3-lxml:arm64 (6.0.2-1) ... 92s Selecting previously unselected package python3-lz4. 93s Preparing to unpack .../060-python3-lz4_4.4.5+dfsg-1_arm64.deb ... 93s Unpacking python3-lz4 (4.4.5+dfsg-1) ... 93s Selecting previously unselected package python3-mpmath. 93s Preparing to unpack .../061-python3-mpmath_1.3.0-2_all.deb ... 93s Unpacking python3-mpmath (1.3.0-2) ... 93s Selecting previously unselected package python3-sympy. 93s Preparing to unpack .../062-python3-sympy_1.14.0-2_all.deb ... 93s Unpacking python3-sympy (1.14.0-2) ... 93s Selecting previously unselected package python3-ufolib2. 93s Preparing to unpack .../063-python3-ufolib2_0.18.1+dfsg1-1_all.deb ... 93s Unpacking python3-ufolib2 (0.18.1+dfsg1-1) ... 93s Selecting previously unselected package python3-unicodedata2. 93s Preparing to unpack .../064-python3-unicodedata2_16.0.0+ds-1build1_arm64.deb ... 93s Unpacking python3-unicodedata2 (16.0.0+ds-1build1) ... 93s Selecting previously unselected package libzopfli1. 93s Preparing to unpack .../065-libzopfli1_1.0.3-3_arm64.deb ... 93s Unpacking libzopfli1 (1.0.3-3) ... 93s Selecting previously unselected package python3-zopfli. 93s Preparing to unpack .../066-python3-zopfli_0.4.0-1_arm64.deb ... 93s Unpacking python3-zopfli (0.4.0-1) ... 93s Selecting previously unselected package unicode-data. 93s Preparing to unpack .../067-unicode-data_16.0.0-1build1_all.deb ... 93s Unpacking unicode-data (16.0.0-1build1) ... 93s Selecting previously unselected package python3-fonttools. 93s Preparing to unpack .../068-python3-fonttools_4.61.1-3_arm64.deb ... 93s Unpacking python3-fonttools (4.61.1-3) ... 93s Selecting previously unselected package python3-kiwisolver. 93s Preparing to unpack .../069-python3-kiwisolver_1.4.10~rc0-1_arm64.deb ... 93s Unpacking python3-kiwisolver (1.4.10~rc0-1) ... 93s Selecting previously unselected package python3-matplotlib. 93s Preparing to unpack .../070-python3-matplotlib_3.10.7+dfsg1-1_arm64.deb ... 93s Unpacking python3-matplotlib (3.10.7+dfsg1-1) ... 94s Selecting previously unselected package python3-tzlocal. 94s Preparing to unpack .../071-python3-tzlocal_5.3.1-2_all.deb ... 94s Unpacking python3-tzlocal (5.3.1-2) ... 94s Selecting previously unselected package zip. 94s Preparing to unpack .../072-zip_3.0-15ubuntu2_arm64.deb ... 94s Unpacking zip (3.0-15ubuntu2) ... 94s Selecting previously unselected package unzip. 94s Preparing to unpack .../073-unzip_6.0-29ubuntu1_arm64.deb ... 94s Unpacking unzip (6.0-29ubuntu1) ... 94s Selecting previously unselected package libpaper2:arm64. 94s Preparing to unpack .../074-libpaper2_2.2.5-0.3build1_arm64.deb ... 94s Unpacking libpaper2:arm64 (2.2.5-0.3build1) ... 94s Selecting previously unselected package libpaper-utils. 94s Preparing to unpack .../075-libpaper-utils_2.2.5-0.3build1_arm64.deb ... 94s Unpacking libpaper-utils (2.2.5-0.3build1) ... 94s Selecting previously unselected package xdg-utils. 94s Preparing to unpack .../076-xdg-utils_1.2.1-2ubuntu2_all.deb ... 94s Unpacking xdg-utils (1.2.1-2ubuntu2) ... 94s Selecting previously unselected package libpixman-1-0:arm64. 94s Preparing to unpack .../077-libpixman-1-0_0.46.4-1_arm64.deb ... 94s Unpacking libpixman-1-0:arm64 (0.46.4-1) ... 94s Selecting previously unselected package libxcb-render0:arm64. 94s Preparing to unpack .../078-libxcb-render0_1.17.0-2build1_arm64.deb ... 94s Unpacking libxcb-render0:arm64 (1.17.0-2build1) ... 94s Selecting previously unselected package libxcb-shm0:arm64. 94s Preparing to unpack .../079-libxcb-shm0_1.17.0-2build1_arm64.deb ... 94s Unpacking libxcb-shm0:arm64 (1.17.0-2build1) ... 94s Selecting previously unselected package libcairo2:arm64. 94s Preparing to unpack .../080-libcairo2_1.18.4-3_arm64.deb ... 94s Unpacking libcairo2:arm64 (1.18.4-3) ... 94s Selecting previously unselected package libthai-data. 94s Preparing to unpack .../081-libthai-data_0.1.30-1_all.deb ... 94s Unpacking libthai-data (0.1.30-1) ... 94s Selecting previously unselected package libdatrie1:arm64. 94s Preparing to unpack .../082-libdatrie1_0.2.14-1_arm64.deb ... 94s Unpacking libdatrie1:arm64 (0.2.14-1) ... 94s Selecting previously unselected package libthai0:arm64. 94s Preparing to unpack .../083-libthai0_0.1.30-1_arm64.deb ... 94s Unpacking libthai0:arm64 (0.1.30-1) ... 94s Selecting previously unselected package libpango-1.0-0:arm64. 94s Preparing to unpack .../084-libpango-1.0-0_1.56.4-1_arm64.deb ... 94s Unpacking libpango-1.0-0:arm64 (1.56.4-1) ... 95s Selecting previously unselected package libpangoft2-1.0-0:arm64. 95s Preparing to unpack .../085-libpangoft2-1.0-0_1.56.4-1_arm64.deb ... 95s Unpacking libpangoft2-1.0-0:arm64 (1.56.4-1) ... 95s Selecting previously unselected package libpangocairo-1.0-0:arm64. 95s Preparing to unpack .../086-libpangocairo-1.0-0_1.56.4-1_arm64.deb ... 95s Unpacking libpangocairo-1.0-0:arm64 (1.56.4-1) ... 95s Selecting previously unselected package libice6:arm64. 95s Preparing to unpack .../087-libice6_2%3a1.1.1-1build1_arm64.deb ... 95s Unpacking libice6:arm64 (2:1.1.1-1build1) ... 95s Selecting previously unselected package libsm6:arm64. 95s Preparing to unpack .../088-libsm6_2%3a1.2.6-1_arm64.deb ... 95s Unpacking libsm6:arm64 (2:1.2.6-1) ... 95s Selecting previously unselected package libxt6t64:arm64. 95s Preparing to unpack .../089-libxt6t64_1%3a1.2.1-1.3_arm64.deb ... 95s Unpacking libxt6t64:arm64 (1:1.2.1-1.3) ... 95s Selecting previously unselected package r-base-core. 95s Preparing to unpack .../090-r-base-core_4.5.2-1ubuntu2_arm64.deb ... 95s Unpacking r-base-core (4.5.2-1ubuntu2) ... 95s Selecting previously unselected package python3-rpy2. 95s Preparing to unpack .../091-python3-rpy2_3.6.4-2_arm64.deb ... 95s Unpacking python3-rpy2 (3.6.4-2) ... 95s Selecting previously unselected package r-cran-lattice. 95s Preparing to unpack .../092-r-cran-lattice_0.22-7-1_arm64.deb ... 95s Unpacking r-cran-lattice (0.22-7-1) ... 95s Selecting previously unselected package r-cran-matrix. 95s Preparing to unpack .../093-r-cran-matrix_1.7-4-1_arm64.deb ... 95s Unpacking r-cran-matrix (1.7-4-1) ... 95s Selecting previously unselected package r-cran-survival. 95s Preparing to unpack .../094-r-cran-survival_3.8-3-1_arm64.deb ... 95s Unpacking r-cran-survival (3.8-3-1) ... 95s Selecting previously unselected package r-cran-mvtnorm. 95s Preparing to unpack .../095-r-cran-mvtnorm_1.3-3-1_arm64.deb ... 95s Unpacking r-cran-mvtnorm (1.3-3-1) ... 95s Selecting previously unselected package r-cran-libcoin. 95s Preparing to unpack .../096-r-cran-libcoin_1.0-10-1_arm64.deb ... 95s Unpacking r-cran-libcoin (1.0-10-1) ... 95s Selecting previously unselected package r-cran-matrixstats. 96s Preparing to unpack .../097-r-cran-matrixstats_1.5.0-1_arm64.deb ... 96s Unpacking r-cran-matrixstats (1.5.0-1) ... 96s Selecting previously unselected package r-cran-modeltools. 96s Preparing to unpack .../098-r-cran-modeltools_0.2-24-1_all.deb ... 96s Unpacking r-cran-modeltools (0.2-24-1) ... 96s Selecting previously unselected package r-cran-mass. 96s Preparing to unpack .../099-r-cran-mass_7.3-65-1_arm64.deb ... 96s Unpacking r-cran-mass (7.3-65-1) ... 96s Selecting previously unselected package r-cran-th.data. 96s Preparing to unpack .../100-r-cran-th.data_1.1-5-1_all.deb ... 96s Unpacking r-cran-th.data (1.1-5-1) ... 96s Selecting previously unselected package r-cran-zoo. 96s Preparing to unpack .../101-r-cran-zoo_1.8-15-1_arm64.deb ... 96s Unpacking r-cran-zoo (1.8-15-1) ... 96s Selecting previously unselected package r-cran-sandwich. 96s Preparing to unpack .../102-r-cran-sandwich_3.1-1-1_all.deb ... 96s Unpacking r-cran-sandwich (3.1-1-1) ... 96s Selecting previously unselected package r-cran-codetools. 96s Preparing to unpack .../103-r-cran-codetools_0.2-20-1build1_all.deb ... 96s Unpacking r-cran-codetools (0.2-20-1build1) ... 96s Selecting previously unselected package r-cran-multcomp. 96s Preparing to unpack .../104-r-cran-multcomp_1.4-29-1_all.deb ... 96s Unpacking r-cran-multcomp (1.4-29-1) ... 96s Selecting previously unselected package r-cran-coin. 96s Preparing to unpack .../105-r-cran-coin_1.4-3-1_arm64.deb ... 96s Unpacking r-cran-coin (1.4-3-1) ... 96s Selecting previously unselected package lefse. 96s Preparing to unpack .../106-lefse_1.1.2-2_all.deb ... 96s Unpacking lefse (1.1.2-2) ... 96s Setting up libgraphite2-3:arm64 (1.3.14-11ubuntu1) ... 96s Setting up liblcms2-2:arm64 (2.17-1) ... 96s Setting up libpixman-1-0:arm64 (0.46.4-1) ... 96s Setting up libsharpyuv0:arm64 (1.5.0-0.1build1) ... 96s Setting up liblerc4:arm64 (4.0.0+ds-5ubuntu2) ... 96s Setting up libxrender1:arm64 (1:0.9.12-1) ... 96s Setting up libdatrie1:arm64 (0.2.14-1) ... 96s Setting up python3-lz4 (4.4.5+dfsg-1) ... 96s Setting up libxcb-render0:arm64 (1.17.0-2build1) ... 96s Setting up python3-unicodedata2 (16.0.0+ds-1build1) ... 96s Setting up fonts-lyx (2.5.0~RC2-3) ... 96s Setting up unzip (6.0-29ubuntu1) ... 96s Setting up x11-common (1:7.7+24ubuntu1) ... 97s Setting up libdeflate0:arm64 (1.23-2) ... 97s Setting up libqhull-r8.0:arm64 (2020.2-8) ... 97s Setting up python3-pytz (2025.2-5) ... 97s Setting up libxcb-shm0:arm64 (1.17.0-2build1) ... 97s Setting up libgomp1:arm64 (15.2.0-11ubuntu1) ... 97s Setting up python3-click (8.2.0+0.really.8.1.8-1build1) ... 97s Setting up libjbig0:arm64 (2.1-6.1ubuntu3) ... 97s Setting up libaec0:arm64 (1.1.4-2) ... 97s Setting up unicode-data (16.0.0-1build1) ... 97s Setting up python3-decorator (5.2.1-2) ... 97s Setting up zip (3.0-15ubuntu2) ... 97s Setting up libblas3:arm64 (3.12.1-7ubuntu1) ... 97s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 97s Setting up libzopfli1 (1.0.3-3) ... 97s Setting up python3-brotli (1.1.0-2build6) ... 97s Setting up liblzf1:arm64 (3.6-4build1) ... 97s Setting up python3-cycler (0.12.1-2) ... 98s Setting up libimagequant0:arm64 (2.18.0-1build1) ... 98s Setting up fonts-dejavu-mono (2.37-8build1) ... 98s Setting up python3-kiwisolver (1.4.10~rc0-1) ... 98s Setting up python3-numpy-dev:arm64 (1:2.3.5+ds-3) ... 98s Setting up libtcl8.6:arm64 (8.6.17+dfsg-1) ... 98s Setting up fonts-dejavu-core (2.37-8build1) ... 98s Setting up libjpeg-turbo8:arm64 (2.1.5-4ubuntu2) ... 98s Setting up libgfortran5:arm64 (15.2.0-11ubuntu1) ... 98s Setting up libwebp7:arm64 (1.5.0-0.1build1) ... 98s Setting up libxslt1.1:arm64 (1.1.43-0.3) ... 98s Setting up libopenjp2-7:arm64 (2.5.4-1) ... 98s Setting up libharfbuzz0b:arm64 (12.3.0-4) ... 98s Setting up libthai-data (0.1.30-1) ... 98s Setting up libxss1:arm64 (1:1.2.3-1build4) ... 98s Setting up libpaper2:arm64 (2.2.5-0.3build1) ... 98s Setting up python3-mpmath (1.3.0-2) ... 99s Setting up python3-tzlocal (5.3.1-2) ... 99s Setting up python-matplotlib-data (3.10.7+dfsg1-1) ... 99s Setting up libwebpmux3:arm64 (1.5.0-0.1build1) ... 99s Setting up xdg-utils (1.2.1-2ubuntu2) ... 99s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 99s Setting up libsz2:arm64 (1.1.4-2) ... 99s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 99s Setting up python3-sympy (1.14.0-2) ... 106s /usr/lib/python3/dist-packages/sympy/testing/runtests.py:283: SyntaxWarning: 'return' in a 'finally' block 106s return p.returncode 108s Setting up libice6:arm64 (2:1.1.1-1build1) ... 108s Setting up liblapack3:arm64 (3.12.1-7ubuntu1) ... 108s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 108s Setting up fontconfig-config (2.15.0-2.4ubuntu1) ... 108s Setting up libwebpdemux2:arm64 (1.5.0-0.1build1) ... 108s Setting up libpaper-utils (2.2.5-0.3build1) ... 108s Setting up python3-zopfli (0.4.0-1) ... 108s Setting up libthai0:arm64 (0.1.30-1) ... 108s Setting up libraqm0:arm64 (0.10.3-1) ... 108s Setting up python3-numpy (1:2.3.5+ds-3) ... 110s Setting up libhdf5-310:arm64 (1.14.5+repack-4) ... 110s Setting up python3-lxml:arm64 (6.0.2-1) ... 110s Setting up libtiff6:arm64 (4.7.0-3ubuntu3) ... 110s Setting up python3-contourpy (1.3.3-1) ... 110s Setting up libfontconfig1:arm64 (2.15.0-2.4ubuntu1) ... 110s Setting up libsm6:arm64 (2:1.2.6-1) ... 110s Setting up libhdf5-hl-310:arm64 (1.14.5+repack-4) ... 110s Setting up fontconfig (2.15.0-2.4ubuntu1) ... 110s Regenerating fonts cache... done. 110s Setting up libxft2:arm64 (2.3.6-1build2) ... 110s Setting up python3-scipy (1.16.3-3) ... 115s Setting up libtk8.6:arm64 (8.6.17-1) ... 115s Setting up python3-pandas-lib:arm64 (2.3.3+dfsg-3) ... 115s Setting up libpango-1.0-0:arm64 (1.56.4-1) ... 115s Setting up python3-h5py-serial (3.15.1-4) ... 115s Setting up libcairo2:arm64 (1.18.4-3) ... 115s Setting up python3.13-tk (3.13.11-1) ... 115s Setting up python3-pil:arm64 (12.0.0-1ubuntu1) ... 115s Setting up python3-pandas (2.3.3+dfsg-3) ... 120s Setting up libxt6t64:arm64 (1:1.2.1-1.3) ... 121s Setting up python3-h5py (3.15.1-4) ... 121s Setting up libpangoft2-1.0-0:arm64 (1.56.4-1) ... 121s Setting up libpangocairo-1.0-0:arm64 (1.56.4-1) ... 121s Setting up python3.14-tk (3.14.2-1) ... 121s Setting up python3-tk (3.14.2-1) ... 121s Setting up python3-biom-format (2.1.17-1) ... 121s /usr/lib/python3/dist-packages/doc/sphinxext/numpydoc/numpydoc/docscrape.py:274: SyntaxWarning: "\w" is an invalid escape sequence. Such sequences will not work in the future. Did you mean "\\w"? A raw string is also an option. 121s if re.compile('^([\w., ]+=)?\s*[\w\.]+\(.*\)$').match(summary_str): 121s /usr/lib/python3/dist-packages/doc/sphinxext/numpydoc/numpydoc/docscrape.py:316: SyntaxWarning: "\*" is an invalid escape sequence. Such sequences will not work in the future. Did you mean "\\*"? A raw string is also an option. 121s return [self['Signature'].replace('*','\*')] + [''] 121s /usr/lib/python3/dist-packages/doc/sphinxext/numpydoc/numpydoc/docscrape.py:438: SyntaxWarning: "\*" is an invalid escape sequence. Such sequences will not work in the future. Did you mean "\\*"? A raw string is also an option. 121s argspec = argspec.replace('*','\*') 121s /usr/lib/python3/dist-packages/doc/sphinxext/numpydoc/numpydoc/docscrape.py:456: SyntaxWarning: "\*" is an invalid escape sequence. Such sequences will not work in the future. Did you mean "\\*"? A raw string is also an option. 121s signature = self['Signature'].replace('*', '\*') 121s Setting up python3-pil.imagetk:arm64 (12.0.0-1ubuntu1) ... 121s Setting up r-base-core (4.5.2-1ubuntu2) ... 121s Creating config file /etc/R/Renviron with new version 121s Setting up r-cran-lattice (0.22-7-1) ... 121s Setting up r-cran-modeltools (0.2-24-1) ... 121s Setting up python3-rpy2 (3.6.4-2) ... 122s Setting up r-cran-codetools (0.2-20-1build1) ... 122s Setting up r-cran-matrixstats (1.5.0-1) ... 122s Setting up r-cran-mass (7.3-65-1) ... 122s Setting up r-cran-mvtnorm (1.3-3-1) ... 122s Setting up r-cran-zoo (1.8-15-1) ... 122s Setting up r-cran-matrix (1.7-4-1) ... 122s Setting up r-cran-libcoin (1.0-10-1) ... 122s Setting up r-cran-sandwich (3.1-1-1) ... 122s Setting up r-cran-survival (3.8-3-1) ... 122s Setting up r-cran-th.data (1.1-5-1) ... 122s Setting up r-cran-multcomp (1.4-29-1) ... 122s Setting up r-cran-coin (1.4-3-1) ... 122s Setting up python3-fonttools (4.61.1-3) ... 123s Setting up python3-ufolib2 (0.18.1+dfsg1-1) ... 123s Setting up python3-matplotlib (3.10.7+dfsg1-1) ... 124s Setting up lefse (1.1.2-2) ... 125s Processing triggers for libc-bin (2.42-2ubuntu4) ... 125s Processing triggers for man-db (2.13.1-1) ... 125s Processing triggers for install-info (7.2-5) ... 126s autopkgtest [18:25:42]: test run-unit-test: [----------------------- 129s lefse_run.py comparative pass 129s lefse2circlader.py comparative pass 131s lefse_plot_cladogram.py comparative fail. Instead, I get: 131s /usr/lib/python3/dist-packages/pyparsing/core.py:5637: SyntaxWarning: 'return' in a 'finally' block 131s return f"{type(self).__name__}: {retString}" 132s usage: lefse_plot_cladogram.py [-h] [--clade_sep CLADE_SEP] 132s [--max_lev MAX_LEV] 132s [--max_point_size MAX_POINT_SIZE] 132s [--min_point_size MIN_POINT_SIZE] 132s [--point_edge_width MARKEREDGEWIDTH] 132s [--siblings_connector_width SIBLINGS_CONNECTOR_WIDTH] 132s [--parents_connector_width PARENTS_CONNECTOR_WIDTH] 132s [--radial_start_lev RADIAL_START_LEV] 132s [--labeled_start_lev LABELED_START_LEV] 132s [--labeled_stop_lev LABELED_STOP_LEV] 132s [--abrv_start_lev ABRV_START_LEV] 132s [--abrv_stop_lev ABRV_STOP_LEV] 132s [--expand_void_lev EXPAND_VOID_LEV] 132s [--class_legend_vis CLASS_LEGEND_VIS] 132s [--colored_connector COLORED_CONNECTORS] 132s [--alpha ALPHA] [--title TITLE] 132s [--sub_clade SUB_CLADE] 132s [--title_font_size TITLE_FONT_SIZE] 132s [--right_space_prop R_PROP] 132s [--left_space_prop L_PROP] 132s [--label_font_size LABEL_FONT_SIZE] 132s [--background_color {k,w}] 132s [--colored_labels {0,1}] 132s [--class_legend_font_size CLASS_LEGEND_FONT_SIZE] 132s [--dpi DPI] [--format {png,svg,pdf}] 132s [--all_feats ALL_FEATS] 132s INPUT_FILE OUTPUT_FILE 132s 132s Cladoplot 132s 132s positional arguments: 132s INPUT_FILE tab delimited input file 132s OUTPUT_FILE the file for the output image 132s 132s options: 132s -h, --help show this help message and exit 132s --clade_sep CLADE_SEP 132s --max_lev MAX_LEV 132s --max_point_size MAX_POINT_SIZE 132s --min_point_size MIN_POINT_SIZE 132s --point_edge_width MARKEREDGEWIDTH 132s --siblings_connector_width SIBLINGS_CONNECTOR_WIDTH 132s --parents_connector_width PARENTS_CONNECTOR_WIDTH 132s --radial_start_lev RADIAL_START_LEV 132s --labeled_start_lev LABELED_START_LEV 132s --labeled_stop_lev LABELED_STOP_LEV 132s --abrv_start_lev ABRV_START_LEV 132s --abrv_stop_lev ABRV_STOP_LEV 132s --expand_void_lev EXPAND_VOID_LEV 132s --class_legend_vis CLASS_LEGEND_VIS 132s --colored_connector COLORED_CONNECTORS 132s --alpha ALPHA 132s --title TITLE 132s --sub_clade SUB_CLADE 132s --title_font_size TITLE_FONT_SIZE 132s --right_space_prop R_PROP 132s --left_space_prop L_PROP 132s --label_font_size LABEL_FONT_SIZE 132s --background_color {k,w} 132s set the color of the background 132s --colored_labels {0,1} 132s draw the label with class color (1) or in black (0) 132s --class_legend_font_size CLASS_LEGEND_FONT_SIZE 132s --dpi DPI 132s --format {png,svg,pdf} 132s the format for the output file 132s --all_feats ALL_FEATS 133s autopkgtest [18:25:49]: test run-unit-test: -----------------------] 133s run-unit-test FAIL non-zero exit status 1 133s autopkgtest [18:25:49]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 133s autopkgtest [18:25:49]: @@@@@@@@@@@@@@@@@@@@ summary 133s run-unit-test FAIL non-zero exit status 1