0s autopkgtest [00:49:18]: starting date and time: 2025-10-20 00:49:18+0000 0s autopkgtest [00:49:18]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [00:49:18]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.usaw__cu/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:node-jquery --apt-upgrade lammps --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=node-jquery/3.7.1+dfsg+~3.5.33-1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-arm64-4.secgroup --name adt-resolute-arm64-lammps-20251020-004918-juju-7f2275-prod-proposed-migration-environment-15-2a3ed8d6-b5da-4ec2-92cf-5c3be45394d7 --image adt/ubuntu-resolute-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 4s Creating nova instance adt-resolute-arm64-lammps-20251020-004918-juju-7f2275-prod-proposed-migration-environment-15-2a3ed8d6-b5da-4ec2-92cf-5c3be45394d7 from image adt/ubuntu-resolute-arm64-server-20251019.img (UUID 66624775-bb7d-402f-bbba-489c1d649d18)... 67s autopkgtest [00:50:25]: testbed dpkg architecture: arm64 67s autopkgtest [00:50:25]: testbed apt version: 3.1.8ubuntu1 68s autopkgtest [00:50:26]: @@@@@@@@@@@@@@@@@@@@ test bed setup 68s autopkgtest [00:50:26]: testbed release detected to be: None 69s autopkgtest [00:50:27]: updating testbed package index (apt update) 69s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [83.3 kB] 69s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 69s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 69s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 69s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [5028 B] 70s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [47.8 kB] 70s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [396 kB] 70s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [15.8 kB] 70s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 Packages [110 kB] 70s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 Packages [43.8 kB] 70s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 Packages [274 kB] 70s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 Packages [8020 B] 70s Fetched 984 kB in 1s (770 kB/s) 71s Reading package lists... 72s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 72s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 72s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 72s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 73s Reading package lists... 73s Reading package lists... 74s Building dependency tree... 74s Reading state information... 74s Calculating upgrade... 74s The following packages will be upgraded: 74s distro-info-data dpkg dpkg-dev libaudit-common libaudit1 libdpkg-perl 74s libp11-kit0 libseccomp2 python-apt-common python3-apt 74s 10 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 74s Need to get 3273 kB of archives. 74s After this operation, 503 kB of additional disk space will be used. 74s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 dpkg arm64 1.22.21ubuntu4 [1274 kB] 75s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 libaudit-common all 1:4.0.5-1build2 [6596 B] 75s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 libaudit1 arm64 1:4.0.5-1build2 [58.6 kB] 75s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 distro-info-data all 0.68 [7378 B] 75s Get:5 http://ftpmaster.internal/ubuntu resolute/main arm64 libp11-kit0 arm64 0.25.9-2 [283 kB] 75s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 libseccomp2 arm64 2.6.0-2ubuntu3 [56.1 kB] 75s Get:7 http://ftpmaster.internal/ubuntu resolute/main arm64 python-apt-common all 3.0.0ubuntu2 [21.7 kB] 75s Get:8 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-apt arm64 3.0.0ubuntu2 [197 kB] 75s Get:9 http://ftpmaster.internal/ubuntu resolute/main arm64 dpkg-dev all 1.22.21ubuntu4 [1088 kB] 75s Get:10 http://ftpmaster.internal/ubuntu resolute/main arm64 libdpkg-perl all 1.22.21ubuntu4 [280 kB] 76s dpkg-preconfigure: unable to re-open stdin: No such file or directory 76s Fetched 3273 kB in 1s (2473 kB/s) 76s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83359 files and directories currently installed.) 76s Preparing to unpack .../dpkg_1.22.21ubuntu4_arm64.deb ... 76s Unpacking dpkg (1.22.21ubuntu4) over (1.22.21ubuntu3) ... 77s Setting up dpkg (1.22.21ubuntu4) ... 77s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83359 files and directories currently installed.) 77s Preparing to unpack .../libaudit-common_1%3a4.0.5-1build2_all.deb ... 77s Unpacking libaudit-common (1:4.0.5-1build2) over (1:4.0.5-1build1) ... 77s Setting up libaudit-common (1:4.0.5-1build2) ... 77s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83359 files and directories currently installed.) 77s Preparing to unpack .../libaudit1_1%3a4.0.5-1build2_arm64.deb ... 77s Unpacking libaudit1:arm64 (1:4.0.5-1build2) over (1:4.0.5-1build1) ... 77s Setting up libaudit1:arm64 (1:4.0.5-1build2) ... 77s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83359 files and directories currently installed.) 77s Preparing to unpack .../0-distro-info-data_0.68_all.deb ... 77s Unpacking distro-info-data (0.68) over (0.67~ubuntu1) ... 78s Preparing to unpack .../1-libp11-kit0_0.25.9-2_arm64.deb ... 78s Unpacking libp11-kit0:arm64 (0.25.9-2) over (0.25.5-3ubuntu1) ... 78s Preparing to unpack .../2-libseccomp2_2.6.0-2ubuntu3_arm64.deb ... 78s Unpacking libseccomp2:arm64 (2.6.0-2ubuntu3) over (2.6.0-2ubuntu2) ... 78s Preparing to unpack .../3-python-apt-common_3.0.0ubuntu2_all.deb ... 78s Unpacking python-apt-common (3.0.0ubuntu2) over (3.0.0ubuntu1) ... 78s Preparing to unpack .../4-python3-apt_3.0.0ubuntu2_arm64.deb ... 78s Unpacking python3-apt (3.0.0ubuntu2) over (3.0.0ubuntu1) ... 78s Preparing to unpack .../5-dpkg-dev_1.22.21ubuntu4_all.deb ... 78s Unpacking dpkg-dev (1.22.21ubuntu4) over (1.22.21ubuntu3) ... 78s Preparing to unpack .../6-libdpkg-perl_1.22.21ubuntu4_all.deb ... 78s Unpacking libdpkg-perl (1.22.21ubuntu4) over (1.22.21ubuntu3) ... 78s Setting up distro-info-data (0.68) ... 78s Setting up libseccomp2:arm64 (2.6.0-2ubuntu3) ... 78s Setting up libp11-kit0:arm64 (0.25.9-2) ... 78s Setting up libdpkg-perl (1.22.21ubuntu4) ... 78s Setting up python-apt-common (3.0.0ubuntu2) ... 78s Setting up python3-apt (3.0.0ubuntu2) ... 79s Setting up dpkg-dev (1.22.21ubuntu4) ... 79s Processing triggers for man-db (2.13.1-1) ... 80s Processing triggers for libc-bin (2.42-0ubuntu3) ... 81s autopkgtest [00:50:39]: upgrading testbed (apt dist-upgrade and autopurge) 81s Reading package lists... 81s Building dependency tree... 81s Reading state information... 81s Calculating upgrade... 82s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 82s Reading package lists... 82s Building dependency tree... 82s Reading state information... 82s Solving dependencies... 83s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 83s autopkgtest [00:50:41]: rebooting testbed after setup commands that affected boot 111s autopkgtest [00:51:09]: testbed running kernel: Linux 6.17.0-5-generic #5-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 22 09:50:31 UTC 2025 113s autopkgtest [00:51:11]: @@@@@@@@@@@@@@@@@@@@ apt-source lammps 146s Get:1 http://ftpmaster.internal/ubuntu resolute/universe lammps 20250204+dfsg.1-2 (dsc) [3212 B] 146s Get:2 http://ftpmaster.internal/ubuntu resolute/universe lammps 20250204+dfsg.1-2 (tar) [132 MB] 146s Get:3 http://ftpmaster.internal/ubuntu resolute/universe lammps 20250204+dfsg.1-2 (diff) [17.3 kB] 147s gpgv: Signature made Mon Mar 3 06:11:14 2025 UTC 147s gpgv: using RSA key BBBD45EA818AB86FF67E7285D3E17383CFA7FF06 147s gpgv: Can't check signature: No public key 147s dpkg-source: warning: cannot verify inline signature for ./lammps_20250204+dfsg.1-2.dsc: no acceptable signature found 152s autopkgtest [00:51:50]: testing package lammps version 20250204+dfsg.1-2 153s autopkgtest [00:51:51]: build not needed 171s autopkgtest [00:52:09]: test crack: preparing testbed 171s Reading package lists... 171s Building dependency tree... 171s Reading state information... 171s Solving dependencies... 172s The following NEW packages will be installed: 172s fontconfig-config fonts-dejavu-core fonts-dejavu-mono lammps lammps-data 172s libaec0 libamd-comgr2 libamdhip64-5 libblas3 libcairo2 libdeflate0 172s libdouble-conversion3 libdrm-amdgpu1 libevent-core-2.1-7t64 172s libevent-pthreads-2.1-7t64 libfabric1 libfftw3-double3 libfontconfig1 172s libgbm1 libgfortran5 libgl1 libgl1-mesa-dri libgl2ps1.4 libglew2.2 libglvnd0 172s libglx-mesa0 libglx0 libgomp1 libhdf5-310 libhdf5-hl-310 libhsa-runtime64-1 172s libhsakmt1 libhwloc-plugins libhwloc15 libibmad5 libibumad3 libjbig0 172s libjpeg-turbo8 libjpeg8 libjsoncpp26 libkim-api2 liblammps0t64 liblapack3 172s liblerc4 libllvm17t64 libnetcdf22 libogg0 libopengl0 libopenmpi40 172s libpciaccess0 libpixman-1-0 libpnetcdf6 libproj25 librdmacm1t64 libsharpyuv0 172s libsz2 libtbb12 libtbbbind-2-5 libtbbmalloc2 libtcl8.6 libtheoradec1 172s libtheoraenc1 libtiff6 libtk8.6 libucx0 libvoro++1 libvtk9.3 libvulkan1 172s libwebp7 libx11-xcb1 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 172s libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxft2 libxnvctrl0 172s libxrender1 libxshmfence1 libxss1 libxxf86vm1 mesa-libgallium 172s mpi-default-bin ocl-icd-libopencl1 openmpi-bin openmpi-common proj-data 172s x11-common 172s 0 upgraded, 91 newly installed, 0 to remove and 0 not upgraded. 172s Need to get 132 MB of archives. 172s After this operation, 594 MB of additional disk space will be used. 172s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 172s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 173s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 fontconfig-config arm64 2.15.0-2.3ubuntu1 [38.1 kB] 173s Get:4 http://ftpmaster.internal/ubuntu resolute/universe arm64 lammps-data all 20250204+dfsg.1-2 [10.2 MB] 177s Get:5 http://ftpmaster.internal/ubuntu resolute/universe arm64 libaec0 arm64 1.1.3-1 [22.0 kB] 177s Get:6 http://ftpmaster.internal/ubuntu resolute/universe arm64 libllvm17t64 arm64 1:17.0.6-22build1 [24.8 MB] 180s Get:7 http://ftpmaster.internal/ubuntu resolute/universe arm64 libamd-comgr2 arm64 6.0+git20231212.4510c28+dfsg-3build3 [14.0 MB] 181s Get:8 http://ftpmaster.internal/ubuntu resolute/main arm64 libdrm-amdgpu1 arm64 2.4.125-1 [21.6 kB] 181s Get:9 http://ftpmaster.internal/ubuntu resolute/universe arm64 libhsakmt1 arm64 6.2.4+ds-1 [64.7 kB] 181s Get:10 http://ftpmaster.internal/ubuntu resolute/universe arm64 libhsa-runtime64-1 arm64 6.1.2-3 [305 kB] 181s Get:11 http://ftpmaster.internal/ubuntu resolute/universe arm64 libamdhip64-5 arm64 5.7.1-6 [9707 kB] 181s Get:12 http://ftpmaster.internal/ubuntu resolute/main arm64 libblas3 arm64 3.12.1-6build1 [186 kB] 181s Get:13 http://ftpmaster.internal/ubuntu resolute/main arm64 libfontconfig1 arm64 2.15.0-2.3ubuntu1 [144 kB] 181s Get:14 http://ftpmaster.internal/ubuntu resolute/main arm64 libpixman-1-0 arm64 0.44.0-3 [197 kB] 181s Get:15 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-render0 arm64 1.17.0-2build1 [18.1 kB] 181s Get:16 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-shm0 arm64 1.17.0-2build1 [6234 B] 181s Get:17 http://ftpmaster.internal/ubuntu resolute/main arm64 libxrender1 arm64 1:0.9.12-1 [19.5 kB] 181s Get:18 http://ftpmaster.internal/ubuntu resolute/main arm64 libcairo2 arm64 1.18.4-1build1 [592 kB] 181s Get:19 http://ftpmaster.internal/ubuntu resolute/main arm64 libdeflate0 arm64 1.23-2 [46.4 kB] 181s Get:20 http://ftpmaster.internal/ubuntu resolute/universe arm64 libdouble-conversion3 arm64 3.3.1-1build1 [40.6 kB] 181s Get:21 http://ftpmaster.internal/ubuntu resolute/main arm64 libevent-core-2.1-7t64 arm64 2.1.12-stable-10build1 [97.5 kB] 181s Get:22 http://ftpmaster.internal/ubuntu resolute/main arm64 libevent-pthreads-2.1-7t64 arm64 2.1.12-stable-10build1 [8272 B] 181s Get:23 http://ftpmaster.internal/ubuntu resolute/main arm64 librdmacm1t64 arm64 56.1-1ubuntu1 [71.4 kB] 181s Get:24 http://ftpmaster.internal/ubuntu resolute/universe arm64 libfabric1 arm64 2.1.0-1.1 [622 kB] 181s Get:25 http://ftpmaster.internal/ubuntu resolute/main arm64 libgomp1 arm64 15.2.0-5ubuntu1 [148 kB] 181s Get:26 http://ftpmaster.internal/ubuntu resolute/main arm64 libfftw3-double3 arm64 3.3.10-2fakesync1build2 [399 kB] 181s Get:27 http://ftpmaster.internal/ubuntu resolute/main arm64 libx11-xcb1 arm64 2:1.8.12-1build1 [8216 B] 181s Get:28 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-dri3-0 arm64 1.17.0-2build1 [8120 B] 181s Get:29 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-present0 arm64 1.17.0-2build1 [6560 B] 181s Get:30 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-randr0 arm64 1.17.0-2build1 [20.2 kB] 181s Get:31 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-sync1 arm64 1.17.0-2build1 [10.4 kB] 181s Get:32 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-xfixes0 arm64 1.17.0-2build1 [11.4 kB] 181s Get:33 http://ftpmaster.internal/ubuntu resolute/main arm64 libxshmfence1 arm64 1.3.3-1 [5378 B] 181s Get:34 http://ftpmaster.internal/ubuntu resolute/main arm64 mesa-libgallium arm64 25.2.3-1ubuntu1 [12.1 MB] 182s Get:35 http://ftpmaster.internal/ubuntu resolute/main arm64 libgbm1 arm64 25.2.3-1ubuntu1 [34.4 kB] 182s Get:36 http://ftpmaster.internal/ubuntu resolute/main arm64 libgfortran5 arm64 15.2.0-5ubuntu1 [450 kB] 182s Get:37 http://ftpmaster.internal/ubuntu resolute/main arm64 libvulkan1 arm64 1.4.321.0-1 [169 kB] 182s Get:38 http://ftpmaster.internal/ubuntu resolute/main arm64 libgl1-mesa-dri arm64 25.2.3-1ubuntu1 [34.9 kB] 182s Get:39 http://ftpmaster.internal/ubuntu resolute/main arm64 libglvnd0 arm64 1.7.0-1build2 [59.2 kB] 182s Get:40 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-glx0 arm64 1.17.0-2build1 [27.8 kB] 182s Get:41 http://ftpmaster.internal/ubuntu resolute/main arm64 libxxf86vm1 arm64 1:1.1.4-1build4 [9130 B] 182s Get:42 http://ftpmaster.internal/ubuntu resolute/main arm64 libglx-mesa0 arm64 25.2.3-1ubuntu1 [110 kB] 182s Get:43 http://ftpmaster.internal/ubuntu resolute/main arm64 libglx0 arm64 1.7.0-1build2 [34.5 kB] 182s Get:44 http://ftpmaster.internal/ubuntu resolute/main arm64 libgl1 arm64 1.7.0-1build2 [104 kB] 182s Get:45 http://ftpmaster.internal/ubuntu resolute/universe arm64 libgl2ps1.4 arm64 1.4.2+dfsg1-2build1 [40.6 kB] 182s Get:46 http://ftpmaster.internal/ubuntu resolute/universe arm64 libglew2.2 arm64 2.2.0-4build1 [191 kB] 182s Get:47 http://ftpmaster.internal/ubuntu resolute/universe arm64 libsz2 arm64 1.1.3-1 [5254 B] 182s Get:48 http://ftpmaster.internal/ubuntu resolute/universe arm64 libhdf5-310 arm64 1.14.5+repack-3build1 [1331 kB] 183s Get:49 http://ftpmaster.internal/ubuntu resolute/universe arm64 libhdf5-hl-310 arm64 1.14.5+repack-3build1 [59.8 kB] 183s Get:50 http://ftpmaster.internal/ubuntu resolute/universe arm64 libhwloc15 arm64 2.12.2-1 [169 kB] 183s Get:51 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg-turbo8 arm64 2.1.5-4ubuntu2 [165 kB] 183s Get:52 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 183s Get:53 http://ftpmaster.internal/ubuntu resolute/main arm64 libjsoncpp26 arm64 1.9.6-3 [78.7 kB] 183s Get:54 http://ftpmaster.internal/ubuntu resolute/universe arm64 libkim-api2 arm64 2.3.0-1ubuntu1 [565 kB] 183s Get:55 http://ftpmaster.internal/ubuntu resolute/main arm64 liblapack3 arm64 3.12.1-6build1 [2340 kB] 183s Get:56 http://ftpmaster.internal/ubuntu resolute/universe arm64 libnetcdf22 arm64 1:4.9.3-1build1 [555 kB] 183s Get:57 http://ftpmaster.internal/ubuntu resolute/main arm64 libibumad3 arm64 56.1-1ubuntu1 [31.3 kB] 183s Get:58 http://ftpmaster.internal/ubuntu resolute/main arm64 libibmad5 arm64 56.1-1ubuntu1 [44.1 kB] 183s Get:59 http://ftpmaster.internal/ubuntu resolute/universe arm64 libucx0 arm64 1.19.0+ds-1 [1242 kB] 183s Get:60 http://ftpmaster.internal/ubuntu resolute/main arm64 libpciaccess0 arm64 0.18.1-1ubuntu2 [19.4 kB] 183s Get:61 http://ftpmaster.internal/ubuntu resolute/main arm64 libxnvctrl0 arm64 510.47.03-0ubuntu4 [12.4 kB] 183s Get:62 http://ftpmaster.internal/ubuntu resolute/main arm64 ocl-icd-libopencl1 arm64 2.3.3-1 [42.2 kB] 183s Get:63 http://ftpmaster.internal/ubuntu resolute/universe arm64 libhwloc-plugins arm64 2.12.2-1 [16.6 kB] 183s Get:64 http://ftpmaster.internal/ubuntu resolute/universe arm64 libopenmpi40 arm64 5.0.8-8ubuntu1 [3274 kB] 183s Get:65 http://ftpmaster.internal/ubuntu resolute/universe arm64 libpnetcdf6 arm64 1.14.0-2 [971 kB] 183s Get:66 http://ftpmaster.internal/ubuntu resolute/universe arm64 libvoro++1 arm64 0.5+revert-to-0.4.6+dfsg1-1 [101 kB] 183s Get:67 http://ftpmaster.internal/ubuntu resolute/main arm64 libogg0 arm64 1.3.5-3build1 [22.6 kB] 183s Get:68 http://ftpmaster.internal/ubuntu resolute/main arm64 libopengl0 arm64 1.7.0-1build2 [34.7 kB] 183s Get:69 http://ftpmaster.internal/ubuntu resolute/universe arm64 proj-data all 9.6.0-1 [7955 kB] 185s Get:70 http://ftpmaster.internal/ubuntu resolute/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB] 185s Get:71 http://ftpmaster.internal/ubuntu resolute/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB] 185s Get:72 http://ftpmaster.internal/ubuntu resolute/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB] 185s Get:73 http://ftpmaster.internal/ubuntu resolute/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB] 185s Get:74 http://ftpmaster.internal/ubuntu resolute/main arm64 libtiff6 arm64 4.7.0-3ubuntu3 [196 kB] 185s Get:75 http://ftpmaster.internal/ubuntu resolute/universe arm64 libproj25 arm64 9.6.0-1 [1358 kB] 185s Get:76 http://ftpmaster.internal/ubuntu resolute/universe arm64 libtbbbind-2-5 arm64 2022.1.0-1 [14.3 kB] 185s Get:77 http://ftpmaster.internal/ubuntu resolute/universe arm64 libtbbmalloc2 arm64 2022.1.0-1 [39.0 kB] 185s Get:78 http://ftpmaster.internal/ubuntu resolute/universe arm64 libtbb12 arm64 2022.1.0-1 [72.1 kB] 185s Get:79 http://ftpmaster.internal/ubuntu resolute/main arm64 libtcl8.6 arm64 8.6.17+dfsg-1 [1024 kB] 185s Get:80 http://ftpmaster.internal/ubuntu resolute/main arm64 libtheoradec1 arm64 1.2.0~alpha1+dfsg-6 [57.1 kB] 185s Get:81 http://ftpmaster.internal/ubuntu resolute/main arm64 libtheoraenc1 arm64 1.2.0~alpha1+dfsg-6 [107 kB] 185s Get:82 http://ftpmaster.internal/ubuntu resolute/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB] 185s Get:83 http://ftpmaster.internal/ubuntu resolute/main arm64 x11-common all 1:7.7+24ubuntu1 [22.4 kB] 185s Get:84 http://ftpmaster.internal/ubuntu resolute/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B] 185s Get:85 http://ftpmaster.internal/ubuntu resolute/main arm64 libtk8.6 arm64 8.6.17-1 [811 kB] 185s Get:86 http://ftpmaster.internal/ubuntu resolute/universe arm64 libvtk9.3 arm64 9.3.0+dfsg1-4ubuntu2 [24.0 MB] 188s Get:87 http://ftpmaster.internal/ubuntu resolute/universe arm64 liblammps0t64 arm64 20250204+dfsg.1-2 [7457 kB] 189s Get:88 http://ftpmaster.internal/ubuntu resolute/universe arm64 openmpi-common all 5.0.8-8ubuntu1 [108 kB] 189s Get:89 http://ftpmaster.internal/ubuntu resolute/universe arm64 openmpi-bin arm64 5.0.8-8ubuntu1 [209 kB] 189s Get:90 http://ftpmaster.internal/ubuntu resolute/universe arm64 mpi-default-bin arm64 1.18 [2510 B] 189s Get:91 http://ftpmaster.internal/ubuntu resolute/universe arm64 lammps arm64 20250204+dfsg.1-2 [15.3 kB] 190s Fetched 132 MB in 17s (7523 kB/s) 190s Selecting previously unselected package fonts-dejavu-mono. 190s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83363 files and directories currently installed.) 190s Preparing to unpack .../00-fonts-dejavu-mono_2.37-8_all.deb ... 190s Unpacking fonts-dejavu-mono (2.37-8) ... 190s Selecting previously unselected package fonts-dejavu-core. 190s Preparing to unpack .../01-fonts-dejavu-core_2.37-8_all.deb ... 190s Unpacking fonts-dejavu-core (2.37-8) ... 190s Selecting previously unselected package fontconfig-config. 190s Preparing to unpack .../02-fontconfig-config_2.15.0-2.3ubuntu1_arm64.deb ... 190s Unpacking fontconfig-config (2.15.0-2.3ubuntu1) ... 190s Selecting previously unselected package lammps-data. 190s Preparing to unpack .../03-lammps-data_20250204+dfsg.1-2_all.deb ... 190s Unpacking lammps-data (20250204+dfsg.1-2) ... 190s Selecting previously unselected package libaec0:arm64. 190s Preparing to unpack .../04-libaec0_1.1.3-1_arm64.deb ... 190s Unpacking libaec0:arm64 (1.1.3-1) ... 190s Selecting previously unselected package libllvm17t64:arm64. 191s Preparing to unpack .../05-libllvm17t64_1%3a17.0.6-22build1_arm64.deb ... 191s Unpacking libllvm17t64:arm64 (1:17.0.6-22build1) ... 191s Selecting previously unselected package libamd-comgr2:arm64. 191s Preparing to unpack .../06-libamd-comgr2_6.0+git20231212.4510c28+dfsg-3build3_arm64.deb ... 191s Unpacking libamd-comgr2:arm64 (6.0+git20231212.4510c28+dfsg-3build3) ... 192s Selecting previously unselected package libdrm-amdgpu1:arm64. 192s Preparing to unpack .../07-libdrm-amdgpu1_2.4.125-1_arm64.deb ... 192s Unpacking libdrm-amdgpu1:arm64 (2.4.125-1) ... 192s Selecting previously unselected package libhsakmt1:arm64. 192s Preparing to unpack .../08-libhsakmt1_6.2.4+ds-1_arm64.deb ... 192s Unpacking libhsakmt1:arm64 (6.2.4+ds-1) ... 192s Selecting previously unselected package libhsa-runtime64-1:arm64. 192s Preparing to unpack .../09-libhsa-runtime64-1_6.1.2-3_arm64.deb ... 192s Unpacking libhsa-runtime64-1:arm64 (6.1.2-3) ... 192s Selecting previously unselected package libamdhip64-5:arm64. 192s Preparing to unpack .../10-libamdhip64-5_5.7.1-6_arm64.deb ... 192s Unpacking libamdhip64-5:arm64 (5.7.1-6) ... 192s Selecting previously unselected package libblas3:arm64. 192s Preparing to unpack .../11-libblas3_3.12.1-6build1_arm64.deb ... 192s Unpacking libblas3:arm64 (3.12.1-6build1) ... 192s Selecting previously unselected package libfontconfig1:arm64. 192s Preparing to unpack .../12-libfontconfig1_2.15.0-2.3ubuntu1_arm64.deb ... 192s Unpacking libfontconfig1:arm64 (2.15.0-2.3ubuntu1) ... 192s Selecting previously unselected package libpixman-1-0:arm64. 192s Preparing to unpack .../13-libpixman-1-0_0.44.0-3_arm64.deb ... 192s Unpacking libpixman-1-0:arm64 (0.44.0-3) ... 192s Selecting previously unselected package libxcb-render0:arm64. 192s Preparing to unpack .../14-libxcb-render0_1.17.0-2build1_arm64.deb ... 192s Unpacking libxcb-render0:arm64 (1.17.0-2build1) ... 192s Selecting previously unselected package libxcb-shm0:arm64. 192s Preparing to unpack .../15-libxcb-shm0_1.17.0-2build1_arm64.deb ... 192s Unpacking libxcb-shm0:arm64 (1.17.0-2build1) ... 192s Selecting previously unselected package libxrender1:arm64. 192s Preparing to unpack .../16-libxrender1_1%3a0.9.12-1_arm64.deb ... 192s Unpacking libxrender1:arm64 (1:0.9.12-1) ... 192s Selecting previously unselected package libcairo2:arm64. 192s Preparing to unpack .../17-libcairo2_1.18.4-1build1_arm64.deb ... 192s Unpacking libcairo2:arm64 (1.18.4-1build1) ... 192s Selecting previously unselected package libdeflate0:arm64. 192s Preparing to unpack .../18-libdeflate0_1.23-2_arm64.deb ... 192s Unpacking libdeflate0:arm64 (1.23-2) ... 192s Selecting previously unselected package libdouble-conversion3:arm64. 192s Preparing to unpack .../19-libdouble-conversion3_3.3.1-1build1_arm64.deb ... 192s Unpacking libdouble-conversion3:arm64 (3.3.1-1build1) ... 192s Selecting previously unselected package libevent-core-2.1-7t64:arm64. 192s Preparing to unpack .../20-libevent-core-2.1-7t64_2.1.12-stable-10build1_arm64.deb ... 192s Unpacking libevent-core-2.1-7t64:arm64 (2.1.12-stable-10build1) ... 192s Selecting previously unselected package libevent-pthreads-2.1-7t64:arm64. 192s Preparing to unpack .../21-libevent-pthreads-2.1-7t64_2.1.12-stable-10build1_arm64.deb ... 192s Unpacking libevent-pthreads-2.1-7t64:arm64 (2.1.12-stable-10build1) ... 192s Selecting previously unselected package librdmacm1t64:arm64. 192s Preparing to unpack .../22-librdmacm1t64_56.1-1ubuntu1_arm64.deb ... 192s Unpacking librdmacm1t64:arm64 (56.1-1ubuntu1) ... 192s Selecting previously unselected package libfabric1:arm64. 192s Preparing to unpack .../23-libfabric1_2.1.0-1.1_arm64.deb ... 192s Unpacking libfabric1:arm64 (2.1.0-1.1) ... 192s Selecting previously unselected package libgomp1:arm64. 192s Preparing to unpack .../24-libgomp1_15.2.0-5ubuntu1_arm64.deb ... 192s Unpacking libgomp1:arm64 (15.2.0-5ubuntu1) ... 192s Selecting previously unselected package libfftw3-double3:arm64. 192s Preparing to unpack .../25-libfftw3-double3_3.3.10-2fakesync1build2_arm64.deb ... 192s Unpacking libfftw3-double3:arm64 (3.3.10-2fakesync1build2) ... 192s Selecting previously unselected package libx11-xcb1:arm64. 192s Preparing to unpack .../26-libx11-xcb1_2%3a1.8.12-1build1_arm64.deb ... 192s Unpacking libx11-xcb1:arm64 (2:1.8.12-1build1) ... 192s Selecting previously unselected package libxcb-dri3-0:arm64. 192s Preparing to unpack .../27-libxcb-dri3-0_1.17.0-2build1_arm64.deb ... 192s Unpacking libxcb-dri3-0:arm64 (1.17.0-2build1) ... 192s Selecting previously unselected package libxcb-present0:arm64. 192s Preparing to unpack .../28-libxcb-present0_1.17.0-2build1_arm64.deb ... 192s Unpacking libxcb-present0:arm64 (1.17.0-2build1) ... 192s Selecting previously unselected package libxcb-randr0:arm64. 192s Preparing to unpack .../29-libxcb-randr0_1.17.0-2build1_arm64.deb ... 192s Unpacking libxcb-randr0:arm64 (1.17.0-2build1) ... 192s Selecting previously unselected package libxcb-sync1:arm64. 192s Preparing to unpack .../30-libxcb-sync1_1.17.0-2build1_arm64.deb ... 192s Unpacking libxcb-sync1:arm64 (1.17.0-2build1) ... 192s Selecting previously unselected package libxcb-xfixes0:arm64. 192s Preparing to unpack .../31-libxcb-xfixes0_1.17.0-2build1_arm64.deb ... 192s Unpacking libxcb-xfixes0:arm64 (1.17.0-2build1) ... 193s Selecting previously unselected package libxshmfence1:arm64. 193s Preparing to unpack .../32-libxshmfence1_1.3.3-1_arm64.deb ... 193s Unpacking libxshmfence1:arm64 (1.3.3-1) ... 193s Selecting previously unselected package mesa-libgallium:arm64. 193s Preparing to unpack .../33-mesa-libgallium_25.2.3-1ubuntu1_arm64.deb ... 193s Unpacking mesa-libgallium:arm64 (25.2.3-1ubuntu1) ... 193s Selecting previously unselected package libgbm1:arm64. 193s Preparing to unpack .../34-libgbm1_25.2.3-1ubuntu1_arm64.deb ... 193s Unpacking libgbm1:arm64 (25.2.3-1ubuntu1) ... 193s Selecting previously unselected package libgfortran5:arm64. 193s Preparing to unpack .../35-libgfortran5_15.2.0-5ubuntu1_arm64.deb ... 193s Unpacking libgfortran5:arm64 (15.2.0-5ubuntu1) ... 193s Selecting previously unselected package libvulkan1:arm64. 193s Preparing to unpack .../36-libvulkan1_1.4.321.0-1_arm64.deb ... 193s Unpacking libvulkan1:arm64 (1.4.321.0-1) ... 193s Selecting previously unselected package libgl1-mesa-dri:arm64. 193s Preparing to unpack .../37-libgl1-mesa-dri_25.2.3-1ubuntu1_arm64.deb ... 193s Unpacking libgl1-mesa-dri:arm64 (25.2.3-1ubuntu1) ... 193s Selecting previously unselected package libglvnd0:arm64. 193s Preparing to unpack .../38-libglvnd0_1.7.0-1build2_arm64.deb ... 193s Unpacking libglvnd0:arm64 (1.7.0-1build2) ... 193s Selecting previously unselected package libxcb-glx0:arm64. 193s Preparing to unpack .../39-libxcb-glx0_1.17.0-2build1_arm64.deb ... 193s Unpacking libxcb-glx0:arm64 (1.17.0-2build1) ... 193s Selecting previously unselected package libxxf86vm1:arm64. 193s Preparing to unpack .../40-libxxf86vm1_1%3a1.1.4-1build4_arm64.deb ... 193s Unpacking libxxf86vm1:arm64 (1:1.1.4-1build4) ... 193s Selecting previously unselected package libglx-mesa0:arm64. 193s Preparing to unpack .../41-libglx-mesa0_25.2.3-1ubuntu1_arm64.deb ... 193s Unpacking libglx-mesa0:arm64 (25.2.3-1ubuntu1) ... 193s Selecting previously unselected package libglx0:arm64. 193s Preparing to unpack .../42-libglx0_1.7.0-1build2_arm64.deb ... 193s Unpacking libglx0:arm64 (1.7.0-1build2) ... 193s Selecting previously unselected package libgl1:arm64. 193s Preparing to unpack .../43-libgl1_1.7.0-1build2_arm64.deb ... 193s Unpacking libgl1:arm64 (1.7.0-1build2) ... 193s Selecting previously unselected package libgl2ps1.4. 193s Preparing to unpack .../44-libgl2ps1.4_1.4.2+dfsg1-2build1_arm64.deb ... 193s Unpacking libgl2ps1.4 (1.4.2+dfsg1-2build1) ... 193s Selecting previously unselected package libglew2.2:arm64. 193s Preparing to unpack .../45-libglew2.2_2.2.0-4build1_arm64.deb ... 193s Unpacking libglew2.2:arm64 (2.2.0-4build1) ... 193s Selecting previously unselected package libsz2:arm64. 193s Preparing to unpack .../46-libsz2_1.1.3-1_arm64.deb ... 193s Unpacking libsz2:arm64 (1.1.3-1) ... 193s Selecting previously unselected package libhdf5-310:arm64. 193s Preparing to unpack .../47-libhdf5-310_1.14.5+repack-3build1_arm64.deb ... 193s Unpacking libhdf5-310:arm64 (1.14.5+repack-3build1) ... 193s Selecting previously unselected package libhdf5-hl-310:arm64. 193s Preparing to unpack .../48-libhdf5-hl-310_1.14.5+repack-3build1_arm64.deb ... 193s Unpacking libhdf5-hl-310:arm64 (1.14.5+repack-3build1) ... 193s Selecting previously unselected package libhwloc15:arm64. 193s Preparing to unpack .../49-libhwloc15_2.12.2-1_arm64.deb ... 193s Unpacking libhwloc15:arm64 (2.12.2-1) ... 193s Selecting previously unselected package libjpeg-turbo8:arm64. 193s Preparing to unpack .../50-libjpeg-turbo8_2.1.5-4ubuntu2_arm64.deb ... 193s Unpacking libjpeg-turbo8:arm64 (2.1.5-4ubuntu2) ... 193s Selecting previously unselected package libjpeg8:arm64. 193s Preparing to unpack .../51-libjpeg8_8c-2ubuntu11_arm64.deb ... 193s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 193s Selecting previously unselected package libjsoncpp26:arm64. 193s Preparing to unpack .../52-libjsoncpp26_1.9.6-3_arm64.deb ... 193s Unpacking libjsoncpp26:arm64 (1.9.6-3) ... 194s Selecting previously unselected package libkim-api2:arm64. 194s Preparing to unpack .../53-libkim-api2_2.3.0-1ubuntu1_arm64.deb ... 194s Unpacking libkim-api2:arm64 (2.3.0-1ubuntu1) ... 194s Selecting previously unselected package liblapack3:arm64. 194s Preparing to unpack .../54-liblapack3_3.12.1-6build1_arm64.deb ... 194s Unpacking liblapack3:arm64 (3.12.1-6build1) ... 194s Selecting previously unselected package libnetcdf22:arm64. 194s Preparing to unpack .../55-libnetcdf22_1%3a4.9.3-1build1_arm64.deb ... 194s Unpacking libnetcdf22:arm64 (1:4.9.3-1build1) ... 194s Selecting previously unselected package libibumad3:arm64. 194s Preparing to unpack .../56-libibumad3_56.1-1ubuntu1_arm64.deb ... 194s Unpacking libibumad3:arm64 (56.1-1ubuntu1) ... 194s Selecting previously unselected package libibmad5:arm64. 194s Preparing to unpack .../57-libibmad5_56.1-1ubuntu1_arm64.deb ... 194s Unpacking libibmad5:arm64 (56.1-1ubuntu1) ... 194s Selecting previously unselected package libucx0:arm64. 194s Preparing to unpack .../58-libucx0_1.19.0+ds-1_arm64.deb ... 194s Unpacking libucx0:arm64 (1.19.0+ds-1) ... 194s Selecting previously unselected package libpciaccess0:arm64. 194s Preparing to unpack .../59-libpciaccess0_0.18.1-1ubuntu2_arm64.deb ... 194s Unpacking libpciaccess0:arm64 (0.18.1-1ubuntu2) ... 194s Selecting previously unselected package libxnvctrl0:arm64. 194s Preparing to unpack .../60-libxnvctrl0_510.47.03-0ubuntu4_arm64.deb ... 194s Unpacking libxnvctrl0:arm64 (510.47.03-0ubuntu4) ... 194s Selecting previously unselected package ocl-icd-libopencl1:arm64. 194s Preparing to unpack .../61-ocl-icd-libopencl1_2.3.3-1_arm64.deb ... 194s Unpacking ocl-icd-libopencl1:arm64 (2.3.3-1) ... 194s Selecting previously unselected package libhwloc-plugins:arm64. 194s Preparing to unpack .../62-libhwloc-plugins_2.12.2-1_arm64.deb ... 194s Unpacking libhwloc-plugins:arm64 (2.12.2-1) ... 194s Selecting previously unselected package libopenmpi40:arm64. 194s Preparing to unpack .../63-libopenmpi40_5.0.8-8ubuntu1_arm64.deb ... 194s Unpacking libopenmpi40:arm64 (5.0.8-8ubuntu1) ... 194s Selecting previously unselected package libpnetcdf6:arm64. 194s Preparing to unpack .../64-libpnetcdf6_1.14.0-2_arm64.deb ... 194s Unpacking libpnetcdf6:arm64 (1.14.0-2) ... 194s Selecting previously unselected package libvoro++1. 194s Preparing to unpack .../65-libvoro++1_0.5+revert-to-0.4.6+dfsg1-1_arm64.deb ... 194s Unpacking libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ... 194s Selecting previously unselected package libogg0:arm64. 194s Preparing to unpack .../66-libogg0_1.3.5-3build1_arm64.deb ... 194s Unpacking libogg0:arm64 (1.3.5-3build1) ... 194s Selecting previously unselected package libopengl0:arm64. 194s Preparing to unpack .../67-libopengl0_1.7.0-1build2_arm64.deb ... 194s Unpacking libopengl0:arm64 (1.7.0-1build2) ... 194s Selecting previously unselected package proj-data. 194s Preparing to unpack .../68-proj-data_9.6.0-1_all.deb ... 194s Unpacking proj-data (9.6.0-1) ... 194s Selecting previously unselected package libjbig0:arm64. 194s Preparing to unpack .../69-libjbig0_2.1-6.1ubuntu2_arm64.deb ... 194s Unpacking libjbig0:arm64 (2.1-6.1ubuntu2) ... 194s Selecting previously unselected package liblerc4:arm64. 195s Preparing to unpack .../70-liblerc4_4.0.0+ds-5ubuntu1_arm64.deb ... 195s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 195s Selecting previously unselected package libsharpyuv0:arm64. 195s Preparing to unpack .../71-libsharpyuv0_1.5.0-0.1_arm64.deb ... 195s Unpacking libsharpyuv0:arm64 (1.5.0-0.1) ... 195s Selecting previously unselected package libwebp7:arm64. 195s Preparing to unpack .../72-libwebp7_1.5.0-0.1_arm64.deb ... 195s Unpacking libwebp7:arm64 (1.5.0-0.1) ... 195s Selecting previously unselected package libtiff6:arm64. 195s Preparing to unpack .../73-libtiff6_4.7.0-3ubuntu3_arm64.deb ... 195s Unpacking libtiff6:arm64 (4.7.0-3ubuntu3) ... 195s Selecting previously unselected package libproj25:arm64. 195s Preparing to unpack .../74-libproj25_9.6.0-1_arm64.deb ... 195s Unpacking libproj25:arm64 (9.6.0-1) ... 195s Selecting previously unselected package libtbbbind-2-5:arm64. 195s Preparing to unpack .../75-libtbbbind-2-5_2022.1.0-1_arm64.deb ... 195s Unpacking libtbbbind-2-5:arm64 (2022.1.0-1) ... 195s Selecting previously unselected package libtbbmalloc2:arm64. 195s Preparing to unpack .../76-libtbbmalloc2_2022.1.0-1_arm64.deb ... 195s Unpacking libtbbmalloc2:arm64 (2022.1.0-1) ... 195s Selecting previously unselected package libtbb12:arm64. 195s Preparing to unpack .../77-libtbb12_2022.1.0-1_arm64.deb ... 195s Unpacking libtbb12:arm64 (2022.1.0-1) ... 195s Selecting previously unselected package libtcl8.6:arm64. 195s Preparing to unpack .../78-libtcl8.6_8.6.17+dfsg-1_arm64.deb ... 195s Unpacking libtcl8.6:arm64 (8.6.17+dfsg-1) ... 195s Selecting previously unselected package libtheoradec1:arm64. 195s Preparing to unpack .../79-libtheoradec1_1.2.0~alpha1+dfsg-6_arm64.deb ... 195s Unpacking libtheoradec1:arm64 (1.2.0~alpha1+dfsg-6) ... 195s Selecting previously unselected package libtheoraenc1:arm64. 195s Preparing to unpack .../80-libtheoraenc1_1.2.0~alpha1+dfsg-6_arm64.deb ... 195s Unpacking libtheoraenc1:arm64 (1.2.0~alpha1+dfsg-6) ... 195s Selecting previously unselected package libxft2:arm64. 195s Preparing to unpack .../81-libxft2_2.3.6-1build1_arm64.deb ... 195s Unpacking libxft2:arm64 (2.3.6-1build1) ... 195s Selecting previously unselected package x11-common. 195s Preparing to unpack .../82-x11-common_1%3a7.7+24ubuntu1_all.deb ... 195s Unpacking x11-common (1:7.7+24ubuntu1) ... 195s Selecting previously unselected package libxss1:arm64. 195s Preparing to unpack .../83-libxss1_1%3a1.2.3-1build3_arm64.deb ... 195s Unpacking libxss1:arm64 (1:1.2.3-1build3) ... 195s Selecting previously unselected package libtk8.6:arm64. 195s Preparing to unpack .../84-libtk8.6_8.6.17-1_arm64.deb ... 195s Unpacking libtk8.6:arm64 (8.6.17-1) ... 195s Selecting previously unselected package libvtk9.3:arm64. 195s Preparing to unpack .../85-libvtk9.3_9.3.0+dfsg1-4ubuntu2_arm64.deb ... 195s Unpacking libvtk9.3:arm64 (9.3.0+dfsg1-4ubuntu2) ... 196s Selecting previously unselected package liblammps0t64:arm64. 196s Preparing to unpack .../86-liblammps0t64_20250204+dfsg.1-2_arm64.deb ... 196s Unpacking liblammps0t64:arm64 (20250204+dfsg.1-2) ... 196s Selecting previously unselected package openmpi-common. 196s Preparing to unpack .../87-openmpi-common_5.0.8-8ubuntu1_all.deb ... 196s Unpacking openmpi-common (5.0.8-8ubuntu1) ... 196s Selecting previously unselected package openmpi-bin. 196s Preparing to unpack .../88-openmpi-bin_5.0.8-8ubuntu1_arm64.deb ... 196s Unpacking openmpi-bin (5.0.8-8ubuntu1) ... 196s Selecting previously unselected package mpi-default-bin. 196s Preparing to unpack .../89-mpi-default-bin_1.18_arm64.deb ... 196s Unpacking mpi-default-bin (1.18) ... 196s Selecting previously unselected package lammps. 196s Preparing to unpack .../90-lammps_20250204+dfsg.1-2_arm64.deb ... 196s Unpacking lammps (20250204+dfsg.1-2) ... 196s Setting up libxcb-dri3-0:arm64 (1.17.0-2build1) ... 196s Setting up libtbbmalloc2:arm64 (2022.1.0-1) ... 196s Setting up libpixman-1-0:arm64 (0.44.0-3) ... 196s Setting up libsharpyuv0:arm64 (1.5.0-0.1) ... 196s Setting up libx11-xcb1:arm64 (2:1.8.12-1build1) ... 196s Setting up libpciaccess0:arm64 (0.18.1-1ubuntu2) ... 196s Setting up libdouble-conversion3:arm64 (3.3.1-1build1) ... 196s Setting up libxcb-xfixes0:arm64 (1.17.0-2build1) ... 196s Setting up libogg0:arm64 (1.3.5-3build1) ... 196s Setting up liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 196s Setting up proj-data (9.6.0-1) ... 196s Setting up libxrender1:arm64 (1:0.9.12-1) ... 196s Setting up lammps-data (20250204+dfsg.1-2) ... 196s Setting up libxcb-render0:arm64 (1.17.0-2build1) ... 196s Setting up libglvnd0:arm64 (1.7.0-1build2) ... 196s Setting up libxcb-glx0:arm64 (1.17.0-2build1) ... 196s Setting up x11-common (1:7.7+24ubuntu1) ... 197s Setting up libibumad3:arm64 (56.1-1ubuntu1) ... 197s Setting up libdeflate0:arm64 (1.23-2) ... 197s Setting up libxcb-shm0:arm64 (1.17.0-2build1) ... 197s Setting up libibmad5:arm64 (56.1-1ubuntu1) ... 197s Setting up libgomp1:arm64 (15.2.0-5ubuntu1) ... 197s Setting up libjbig0:arm64 (2.1-6.1ubuntu2) ... 197s Setting up libaec0:arm64 (1.1.3-1) ... 197s Setting up libopengl0:arm64 (1.7.0-1build2) ... 197s Setting up libxxf86vm1:arm64 (1:1.1.4-1build4) ... 197s Setting up libxnvctrl0:arm64 (510.47.03-0ubuntu4) ... 197s Setting up libxcb-present0:arm64 (1.17.0-2build1) ... 197s Setting up libtheoraenc1:arm64 (1.2.0~alpha1+dfsg-6) ... 197s Setting up libblas3:arm64 (3.12.1-6build1) ... 197s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 197s Setting up libllvm17t64:arm64 (1:17.0.6-22build1) ... 197s Setting up libxcb-sync1:arm64 (1.17.0-2build1) ... 197s Setting up libjsoncpp26:arm64 (1.9.6-3) ... 197s Setting up fonts-dejavu-mono (2.37-8) ... 197s Setting up libhwloc15:arm64 (2.12.2-1) ... 197s Setting up libtcl8.6:arm64 (8.6.17+dfsg-1) ... 197s Setting up fonts-dejavu-core (2.37-8) ... 197s Setting up libjpeg-turbo8:arm64 (2.1.5-4ubuntu2) ... 197s Setting up libfftw3-double3:arm64 (3.3.10-2fakesync1build2) ... 197s Setting up libgfortran5:arm64 (15.2.0-5ubuntu1) ... 197s Setting up libvulkan1:arm64 (1.4.321.0-1) ... 197s Setting up libwebp7:arm64 (1.5.0-0.1) ... 197s Setting up ocl-icd-libopencl1:arm64 (2.3.3-1) ... 197s Setting up libxshmfence1:arm64 (1.3.3-1) ... 197s Setting up libxcb-randr0:arm64 (1.17.0-2build1) ... 197s Setting up openmpi-common (5.0.8-8ubuntu1) ... 197s Setting up librdmacm1t64:arm64 (56.1-1ubuntu1) ... 197s Setting up libevent-core-2.1-7t64:arm64 (2.1.12-stable-10build1) ... 197s Setting up libamd-comgr2:arm64 (6.0+git20231212.4510c28+dfsg-3build3) ... 197s Setting up libxss1:arm64 (1:1.2.3-1build3) ... 197s Setting up libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ... 197s Setting up libsz2:arm64 (1.1.3-1) ... 197s Setting up libdrm-amdgpu1:arm64 (2.4.125-1) ... 197s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 197s Setting up libfabric1:arm64 (2.1.0-1.1) ... 197s Setting up mesa-libgallium:arm64 (25.2.3-1ubuntu1) ... 197s Setting up liblapack3:arm64 (3.12.1-6build1) ... 197s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 197s Setting up libgbm1:arm64 (25.2.3-1ubuntu1) ... 197s Setting up libevent-pthreads-2.1-7t64:arm64 (2.1.12-stable-10build1) ... 197s Setting up fontconfig-config (2.15.0-2.3ubuntu1) ... 197s Setting up libgl1-mesa-dri:arm64 (25.2.3-1ubuntu1) ... 197s Setting up libkim-api2:arm64 (2.3.0-1ubuntu1) ... 197s Setting up libhwloc-plugins:arm64 (2.12.2-1) ... 197s Setting up libtbbbind-2-5:arm64 (2022.1.0-1) ... 197s Setting up libhdf5-310:arm64 (1.14.5+repack-3build1) ... 197s Setting up libtiff6:arm64 (4.7.0-3ubuntu3) ... 197s Setting up libfontconfig1:arm64 (2.15.0-2.3ubuntu1) ... 197s Setting up libhsakmt1:arm64 (6.2.4+ds-1) ... 197s Setting up libhdf5-hl-310:arm64 (1.14.5+repack-3build1) ... 197s Setting up libxft2:arm64 (2.3.6-1build1) ... 197s Setting up libglx-mesa0:arm64 (25.2.3-1ubuntu1) ... 197s Setting up libglx0:arm64 (1.7.0-1build2) ... 197s Setting up libproj25:arm64 (9.6.0-1) ... 197s Setting up libtk8.6:arm64 (8.6.17-1) ... 197s Setting up libnetcdf22:arm64 (1:4.9.3-1build1) ... 197s Setting up libtbb12:arm64 (2022.1.0-1) ... 197s Setting up libcairo2:arm64 (1.18.4-1build1) ... 197s Setting up libgl1:arm64 (1.7.0-1build2) ... 197s Setting up libtheoradec1:arm64 (1.2.0~alpha1+dfsg-6) ... 197s Setting up libglew2.2:arm64 (2.2.0-4build1) ... 197s Setting up libhsa-runtime64-1:arm64 (6.1.2-3) ... 197s Setting up libgl2ps1.4 (1.4.2+dfsg1-2build1) ... 197s Setting up libamdhip64-5:arm64 (5.7.1-6) ... 197s Setting up libucx0:arm64 (1.19.0+ds-1) ... 197s Setting up libopenmpi40:arm64 (5.0.8-8ubuntu1) ... 197s Setting up libpnetcdf6:arm64 (1.14.0-2) ... 197s Setting up libvtk9.3:arm64 (9.3.0+dfsg1-4ubuntu2) ... 197s Setting up openmpi-bin (5.0.8-8ubuntu1) ... 197s update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode 197s update-alternatives: warning: skip creation of /usr/share/man/man1/mpiexec.1.gz because associated file /usr/share/man/man1/mpiexec.openmpi.1.gz (of link group mpirun) doesn't exist 197s update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode 197s Setting up mpi-default-bin (1.18) ... 197s Setting up liblammps0t64:arm64 (20250204+dfsg.1-2) ... 197s Setting up lammps (20250204+dfsg.1-2) ... 197s Processing triggers for man-db (2.13.1-1) ... 198s Processing triggers for libc-bin (2.42-0ubuntu3) ... 199s autopkgtest [00:52:37]: test crack: [----------------------- 199s LAMMPS (4 Feb 2025) 199s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 199s using 1 OpenMP thread(s) per MPI task 199s Lattice spacing in x,y,z = 1.1142771 1.9299846 1.1142771 199s Created orthogonal box = (0 0 -0.27856928) to (111.42771 77.199383 0.27856928) 199s 2 by 1 by 1 MPI processor grid 199s Created 8141 atoms 199s using lattice units in orthogonal box = (-0.011142771 -0.0077199383 -0.27856928) to (111.43885 77.207103 0.27856928) 199s create_atoms CPU = 0.001 seconds 199s 302 atoms in group lower 199s 302 atoms in group upper 199s 604 atoms in group boundary 199s 7537 atoms in group mobile 199s 841 atoms in group leftupper 199s 841 atoms in group leftlower 199s Setting atom values ... 199s 841 settings made for type 199s Setting atom values ... 199s 841 settings made for type 199s Setting atom values ... 199s 302 settings made for type 199s Setting atom values ... 199s 302 settings made for type 199s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:551) 199s Generated 0 of 10 mixed pair_coeff terms from geometric mixing rule 199s Neighbor list info ... 199s update: every = 1 steps, delay = 5 steps, check = yes 199s max neighbors/atom: 2000, page size: 100000 199s master list distance cutoff = 2.8 199s ghost atom cutoff = 2.8 199s binsize = 1.4, bins = 80 56 1 199s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 199s (1) pair lj/cut, perpetual 199s attributes: half, newton on 199s pair build: half/bin/atomonly/newton 199s stencil: half/bin/2d 199s bin: standard 199s Setting up Verlet run ... 199s Unit style : lj 199s Current step : 0 199s Time step : 0.003 199s Per MPI rank memory allocation (min/avg/max) = 3.097 | 3.097 | 3.097 Mbytes 199s Step Temp E_pair E_mol TotEng Press Volume 199s 0 0.065993465 -3.2595015 0 -3.1984123 -0.035939913 8605.5917 200s 200 0.060035253 -3.2531886 0 -3.1976149 -0.22757684 8638.5331 200s 400 0.06054278 -3.2510706 0 -3.1950271 -0.42811733 8677.8288 200s 600 0.060576995 -3.246816 0 -3.1907408 -0.60017647 8717.6131 200s 800 0.060802753 -3.2413477 0 -3.1850635 -0.74499308 8756.4512 200s 1000 0.061812114 -3.2349942 0 -3.1777756 -0.87130079 8796.9575 200s 1200 0.06317147 -3.2277552 0 -3.1692783 -0.98010628 8823.1488 200s 1400 0.065125405 -3.2198031 0 -3.1595175 -1.0690179 8858.8358 201s 1600 0.06725411 -3.2111272 0 -3.148871 -1.1440993 8892.6607 201s 1800 0.069389572 -3.2019689 0 -3.137736 -1.199078 8933.7591 201s 2000 0.071276448 -3.1921621 0 -3.1261826 -1.239553 8969.0463 201s 2200 0.073243486 -3.1818809 0 -3.1140805 -1.264839 8997.6559 201s 2400 0.075063494 -3.1711703 0 -3.1016851 -1.2772278 9038.4932 201s 2600 0.076789207 -3.1600658 0 -3.0889832 -1.2754953 9073.4997 201s 2800 0.07875979 -3.1487143 0 -3.0758075 -1.2637926 9106.2245 201s 3000 0.080591853 -3.1372361 0 -3.0626334 -1.2388824 9142.7862 201s 3200 0.08227693 -3.125423 0 -3.0492605 -1.2055283 9169.4322 202s 3400 0.084289444 -3.1136554 0 -3.03563 -1.1672422 9204.8205 202s 3600 0.086720297 -3.1021183 0 -3.0218427 -1.126381 9233.2656 202s 3800 0.089264018 -3.0909262 0 -3.0082959 -1.0899774 9265.4143 202s 4000 0.091377688 -3.0795096 0 -2.9949227 -1.0580229 9297.6799 202s 4200 0.092665135 -3.0678736 0 -2.9820949 -1.0390124 9331.6135 202s 4400 0.09055434 -3.0560482 0 -2.9722234 -1.0323741 9362.2075 202s 4600 0.088763719 -3.0446018 0 -2.9624346 -1.027693 9391.6949 202s 4800 0.089467982 -3.0337452 0 -2.950926 -1.0232092 9427.4155 203s 5000 0.089910902 -3.0237571 0 -2.9405279 -1.0174796 9452.031 203s Loop time of 3.12983 on 2 procs for 5000 steps with 8141 atoms 203s 203s Performance: 414080.240 tau/day, 1597.532 timesteps/s, 13.006 Matom-step/s 203s 97.4% CPU use with 2 MPI tasks x 1 OpenMP threads 203s 203s MPI task timing breakdown: 203s Section | min time | avg time | max time |%varavg| %total 203s --------------------------------------------------------------- 203s Pair | 2.2267 | 2.2748 | 2.3229 | 3.2 | 72.68 203s Neigh | 0.11178 | 0.1142 | 0.11662 | 0.7 | 3.65 203s Comm | 0.33194 | 0.37931 | 0.42668 | 7.7 | 12.12 203s Output | 0.0011781 | 0.0039293 | 0.0066806 | 4.4 | 0.13 203s Modify | 0.2251 | 0.23568 | 0.24625 | 2.2 | 7.53 203s Other | | 0.1219 | | | 3.89 203s 203s Nlocal: 4070.5 ave 4085 max 4056 min 203s Histogram: 1 0 0 0 0 0 0 0 0 1 203s Nghost: 207 ave 208 max 206 min 203s Histogram: 1 0 0 0 0 0 0 0 0 1 203s Neighs: 35700 ave 35927 max 35473 min 203s Histogram: 1 0 0 0 0 0 0 0 0 1 203s 203s Total # of neighbors = 71400 203s Ave neighs/atom = 8.7704213 203s Neighbor list builds = 106 203s Dangerous builds = 0 203s Total wall time: 0:00:03 203s LAMMPS (4 Feb 2025) 208s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 208s using 1 OpenMP thread(s) per MPI task 208s Lattice spacing in x,y,z = 1.1142771 1.9299846 1.1142771 208s Created orthogonal box = (0 0 -0.27856928) to (111.42771 77.199383 0.27856928) 208s 1 by 1 by 1 MPI processor grid 208s Created 8141 atoms 208s using lattice units in orthogonal box = (-0.011142771 -0.0077199383 -0.27856928) to (111.43885 77.207103 0.27856928) 208s create_atoms CPU = 0.001 seconds 208s 302 atoms in group lower 208s 302 atoms in group upper 208s 604 atoms in group boundary 208s 7537 atoms in group mobile 208s 841 atoms in group leftupper 208s 841 atoms in group leftlower 208s Setting atom values ... 208s 841 settings made for type 208s Setting atom values ... 208s 841 settings made for type 208s Setting atom values ... 208s 302 settings made for type 208s Setting atom values ... 208s 302 settings made for type 208s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:551) 208s Generated 0 of 10 mixed pair_coeff terms from geometric mixing rule 208s Neighbor list info ... 208s update: every = 1 steps, delay = 5 steps, check = yes 208s max neighbors/atom: 2000, page size: 100000 208s master list distance cutoff = 2.8 208s ghost atom cutoff = 2.8 208s binsize = 1.4, bins = 80 56 1 208s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 208s (1) pair lj/cut, perpetual 208s attributes: half, newton on 208s pair build: half/bin/atomonly/newton 208s stencil: half/bin/2d 208s bin: standard 208s Setting up Verlet run ... 208s Unit style : lj 208s Current step : 0 208s Time step : 0.003 208s Per MPI rank memory allocation (min/avg/max) = 3.112 | 3.112 | 3.112 Mbytes 208s Step Temp E_pair E_mol TotEng Press Volume 208s 0 0.065651733 -3.2595015 0 -3.1987287 -0.036239172 8605.5917 208s 200 0.060086376 -3.2531936 0 -3.1975725 -0.23125026 8638.8101 208s 400 0.060533553 -3.2509973 0 -3.1949623 -0.4305406 8679.2464 208s 600 0.06082965 -3.2466949 0 -3.1903858 -0.6028531 8716.7569 208s 800 0.061677224 -3.2413215 0 -3.1842278 -0.7482749 8756.226 208s 1000 0.062383731 -3.2349273 0 -3.1771796 -0.87425132 8793.1116 208s 1200 0.063709246 -3.2276094 0 -3.1686347 -0.98020161 8828.8863 208s 1400 0.065404552 -3.2196608 0 -3.1591168 -1.0695384 8866.4893 208s 1600 0.067579602 -3.2110378 0 -3.1484804 -1.1456387 8900.6772 208s 1800 0.069324241 -3.2018536 0 -3.1376812 -1.2020999 8933.017 208s 2000 0.071014927 -3.1921108 0 -3.1263733 -1.2430105 8963.9853 208s 2200 0.072992881 -3.1818701 0 -3.1143017 -1.2701297 9004.4136 208s 2400 0.075000723 -3.1712313 0 -3.1018043 -1.2830866 9034.9991 208s 2600 0.076843477 -3.1601004 0 -3.0889675 -1.27924 9072.1325 208s 2800 0.078671706 -3.1487747 0 -3.0759495 -1.2659604 9103.9526 208s 3000 0.080713586 -3.1373277 0 -3.0626123 -1.2440673 9134.552 208s 3200 0.08309469 -3.1260242 0 -3.0491047 -1.214547 9169.0003 208s 3400 0.085424766 -3.1146623 0 -3.0355859 -1.1839326 9206.909 208s 3600 0.087396485 -3.1029493 0 -3.0220477 -1.143412 9233.783 208s 3800 0.089007987 -3.090822 0 -3.0084286 -1.1000791 9259.0348 208s 4000 0.089813071 -3.0794078 0 -2.9962692 -1.062847 9281.82 208s 4200 0.08584753 -3.0668559 0 -2.9873882 -1.037972 9308.8113 208s 4400 0.086197517 -3.0559678 0 -2.9761761 -1.028843 9328.9666 208s 4600 0.086766447 -3.0437627 0 -2.9634443 -1.0208785 9361.9925 208s 4800 0.088195149 -3.0328502 0 -2.9512093 -1.0272063 9395.6122 208s 5000 0.089415266 -3.0228825 0 -2.9401122 -1.0215336 9436.1637 208s Loop time of 5.24596 on 1 procs for 5000 steps with 8141 atoms 208s 208s Performance: 247047.120 tau/day, 953.114 timesteps/s, 7.759 Matom-step/s 208s 99.8% CPU use with 1 MPI tasks x 1 OpenMP threads 208s 208s MPI task timing breakdown: 208s Section | min time | avg time | max time |%varavg| %total 208s --------------------------------------------------------------- 208s Pair | 4.4366 | 4.4366 | 4.4366 | 0.0 | 84.57 208s Neigh | 0.2074 | 0.2074 | 0.2074 | 0.0 | 3.95 208s Comm | 0.0041658 | 0.0041658 | 0.0041658 | 0.0 | 0.08 208s Output | 0.0012496 | 0.0012496 | 0.0012496 | 0.0 | 0.02 208s Modify | 0.46905 | 0.46905 | 0.46905 | 0.0 | 8.94 208s Other | | 0.1275 | | | 2.43 208s 208s Nlocal: 8141 ave 8141 max 8141 min 208s Histogram: 1 0 0 0 0 0 0 0 0 0 208s Nghost: 0 ave 0 max 0 min 208s Histogram: 1 0 0 0 0 0 0 0 0 0 208s Neighs: 71389 ave 71389 max 71389 min 208s Histogram: 1 0 0 0 0 0 0 0 0 0 208s 208s Total # of neighbors = 71389 208s Ave neighs/atom = 8.7690701 208s Neighbor list builds = 100 208s Dangerous builds = 0 208s Total wall time: 0:00:05 208s run: OK 208s autopkgtest [00:52:46]: test crack: -----------------------] 209s crack PASS 209s autopkgtest [00:52:47]: test crack: - - - - - - - - - - results - - - - - - - - - - 209s autopkgtest [00:52:47]: test dipole: preparing testbed 209s Reading package lists... 210s Building dependency tree... 210s Reading state information... 210s Solving dependencies... 210s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 211s autopkgtest [00:52:49]: test dipole: [----------------------- 211s LAMMPS (4 Feb 2025) 211s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 211s using 1 OpenMP thread(s) per MPI task 211s WARNING: Atom style hybrid defines both, per-type and per-atom masses; both must be set, but only per-atom masses will be used (src/atom_vec_hybrid.cpp:132) 211s Lattice spacing in x,y,z = 1.6903085 1.6903085 1.6903085 211s Created orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 211s 2 by 1 by 1 MPI processor grid 211s Created 200 atoms 211s using lattice units in orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 211s create_atoms CPU = 0.001 seconds 211s Setting atom values ... 211s 200 settings made for mass 211s Setting atom values ... 211s 200 settings made for dipole/random 211s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 211s Neighbor list info ... 211s update: every = 1 steps, delay = 0 steps, check = yes 211s max neighbors/atom: 2000, page size: 100000 211s master list distance cutoff = 2.8 211s ghost atom cutoff = 2.8 211s binsize = 1.4, bins = 13 13 2 211s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 211s (1) pair lj/cut/dipole/cut, perpetual 211s attributes: half, newton on 211s pair build: half/bin/atomonly/newton 211s stencil: half/bin/2d 211s bin: standard 211s Setting up Verlet run ... 211s Unit style : lj 211s Current step : 0 211s Time step : 0.005 211s Per MPI rank memory allocation (min/avg/max) = 5.049 | 5.049 | 5.049 Mbytes 211s Step Temp E_pair c_erot TotEng Press 211s 0 0 -2.0965715 0 -2.0965715 -2.4759659 211s 500 0.37155664 -2.7150631 0.22689419 -2.3453642 -0.33510922 211s 1000 0.42354552 -2.749888 0.21162528 -2.3284602 -0.11120147 211s 1500 0.39778312 -2.7597475 0.24737266 -2.3639533 -0.33856086 211s 2000 0.44906518 -2.8037483 0.24422519 -2.3569284 0.15010152 211s 2500 0.46056435 -2.8144144 0.25015831 -2.3561529 -0.38358808 212s 3000 0.4348415 -2.7856362 0.24988108 -2.3529689 0.086257242 212s 3500 0.41528069 -2.7415634 0.22418981 -2.3283591 0.13066802 212s 4000 0.40006774 -2.7153553 0.22170678 -2.3172879 -0.17425321 212s 4500 0.45764976 -2.7751555 0.2288386 -2.319794 -0.22228559 212s 5000 0.45119236 -2.7437941 0.21642728 -2.2948577 0.086840364 212s 5500 0.41805158 -2.7191643 0.2405108 -2.303203 -0.20373032 212s 6000 0.41353959 -2.73374 0.26555768 -2.3222681 0.013197521 212s 6500 0.46952638 -2.7206692 0.19356607 -2.2534905 -0.32099423 212s 7000 0.4308564 -2.6963241 0.21298331 -2.2676219 0.11638995 212s 7500 0.44328381 -2.767933 0.28845767 -2.3268656 -0.055714929 212s 8000 0.48149201 -2.7648936 0.25607634 -2.2858091 -0.24833472 212s 8500 0.44641155 -2.735761 0.26866772 -2.2915815 -0.11006786 212s 9000 0.45443104 -2.70388 0.2307522 -2.2517211 -0.077100374 212s 9500 0.42544663 -2.6959692 0.25023057 -2.2726498 -0.04183171 212s 10000 0.42622279 -2.6434464 0.2125908 -2.2193547 0.052056849 212s Loop time of 0.485589 on 2 procs for 10000 steps with 200 atoms 212s 212s Performance: 8896416.392 tau/day, 20593.556 timesteps/s, 4.119 Matom-step/s 212s 98.5% CPU use with 2 MPI tasks x 1 OpenMP threads 212s 212s MPI task timing breakdown: 212s Section | min time | avg time | max time |%varavg| %total 212s --------------------------------------------------------------- 212s Pair | 0.26006 | 0.29181 | 0.32356 | 5.9 | 60.09 212s Neigh | 0.014481 | 0.015702 | 0.016922 | 1.0 | 3.23 212s Comm | 0.10141 | 0.13371 | 0.16601 | 8.8 | 27.54 212s Output | 0.00035984 | 0.0013063 | 0.0022528 | 2.6 | 0.27 212s Modify | 0.023507 | 0.025445 | 0.027382 | 1.2 | 5.24 212s Other | | 0.01761 | | | 3.63 212s 212s Nlocal: 100 ave 104 max 96 min 212s Histogram: 1 0 0 0 0 0 0 0 0 1 212s Nghost: 123.5 ave 124 max 123 min 212s Histogram: 1 0 0 0 0 0 0 0 0 1 212s Neighs: 820 ave 885 max 755 min 212s Histogram: 1 0 0 0 0 0 0 0 0 1 212s 212s Total # of neighbors = 1640 212s Ave neighs/atom = 8.2 212s Neighbor list builds = 697 212s Dangerous builds = 0 212s Total wall time: 0:00:00 212s LAMMPS (4 Feb 2025) 213s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 213s using 1 OpenMP thread(s) per MPI task 213s WARNING: Atom style hybrid defines both, per-type and per-atom masses; both must be set, but only per-atom masses will be used (src/atom_vec_hybrid.cpp:132) 213s Lattice spacing in x,y,z = 1.6903085 1.6903085 1.6903085 213s Created orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 213s 1 by 1 by 1 MPI processor grid 213s Created 200 atoms 213s using lattice units in orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 213s create_atoms CPU = 0.000 seconds 213s Setting atom values ... 213s 200 settings made for mass 213s Setting atom values ... 213s 200 settings made for dipole/random 213s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 213s Neighbor list info ... 213s update: every = 1 steps, delay = 0 steps, check = yes 213s max neighbors/atom: 2000, page size: 100000 213s master list distance cutoff = 2.8 213s ghost atom cutoff = 2.8 213s binsize = 1.4, bins = 13 13 2 213s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 213s (1) pair lj/cut/dipole/cut, perpetual 213s attributes: half, newton on 213s pair build: half/bin/atomonly/newton 213s stencil: half/bin/2d 213s bin: standard 213s Setting up Verlet run ... 213s Unit style : lj 213s Current step : 0 213s Time step : 0.005 213s Per MPI rank memory allocation (min/avg/max) = 5.05 | 5.05 | 5.05 Mbytes 213s Step Temp E_pair c_erot TotEng Press 213s 0 0 -2.0965715 0 -2.0965715 -2.4759659 213s 500 0.37155664 -2.7150631 0.22689419 -2.3453642 -0.33510922 213s 1000 0.42354552 -2.749888 0.21162528 -2.3284602 -0.11120147 213s 1500 0.39778312 -2.7597475 0.24737266 -2.3639533 -0.33856087 213s 2000 0.44906137 -2.8037446 0.24422529 -2.3569285 0.15012276 213s 2500 0.46036094 -2.8144628 0.25011505 -2.3564037 -0.37955581 213s 3000 0.44916796 -2.7986738 0.24197589 -2.3517517 -0.23759595 213s 3500 0.43708892 -2.7404913 0.20046667 -2.3055878 -0.068108938 213s 4000 0.4277424 -2.7516171 0.22285533 -2.3260134 -0.38856067 213s 4500 0.41051154 -2.7253155 0.22244047 -2.3168566 -0.56435269 213s 5000 0.3930005 -2.7393881 0.26645487 -2.3483526 -0.14501759 213s 5500 0.48374634 -2.7361451 0.17785357 -2.2548175 -0.23588662 213s 6000 0.44341889 -2.7200909 0.2049925 -2.2788891 0.30169398 213s 6500 0.45604374 -2.7449044 0.23816385 -2.2911408 -0.02615159 213s 7000 0.41178901 -2.7023053 0.24691126 -2.2925752 -0.089298567 213s 7500 0.49214202 -2.7631906 0.22991178 -2.2735093 -0.21670068 213s 8000 0.51272822 -2.7861027 0.23867667 -2.2759381 -0.054576195 213s 8500 0.3942697 -2.6555823 0.23621182 -2.263284 -0.15323416 213s 9000 0.44393797 -2.7051517 0.23305036 -2.2634334 -0.32144821 213s 9500 0.49155958 -2.757627 0.23397146 -2.2685252 0.083278026 213s 10000 0.49343489 -2.7193593 0.19771681 -2.2283916 -0.10873755 213s Loop time of 0.698983 on 1 procs for 10000 steps with 200 atoms 213s 213s Performance: 6180408.237 tau/day, 14306.501 timesteps/s, 2.861 Matom-step/s 213s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads 213s 213s MPI task timing breakdown: 213s Section | min time | avg time | max time |%varavg| %total 213s --------------------------------------------------------------- 213s Pair | 0.57261 | 0.57261 | 0.57261 | 0.0 | 81.92 213s Neigh | 0.030917 | 0.030917 | 0.030917 | 0.0 | 4.42 213s Comm | 0.034314 | 0.034314 | 0.034314 | 0.0 | 4.91 213s Output | 0.00033096 | 0.00033096 | 0.00033096 | 0.0 | 0.05 213s Modify | 0.048877 | 0.048877 | 0.048877 | 0.0 | 6.99 213s Other | | 0.01193 | | | 1.71 213s 213s Nlocal: 200 ave 200 max 200 min 213s Histogram: 1 0 0 0 0 0 0 0 0 0 213s Nghost: 155 ave 155 max 155 min 213s Histogram: 1 0 0 0 0 0 0 0 0 0 213s Neighs: 1664 ave 1664 max 1664 min 213s Histogram: 1 0 0 0 0 0 0 0 0 0 213s 213s Total # of neighbors = 1664 213s Ave neighs/atom = 8.32 213s Neighbor list builds = 697 213s Dangerous builds = 0 213s Total wall time: 0:00:00 213s run: OK 213s autopkgtest [00:52:51]: test dipole: -----------------------] 214s autopkgtest [00:52:52]: test dipole: - - - - - - - - - - results - - - - - - - - - - 214s dipole PASS 214s autopkgtest [00:52:52]: test ellipse: preparing testbed 214s Reading package lists... 214s Building dependency tree... 214s Reading state information... 215s Solving dependencies... 215s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 216s autopkgtest [00:52:54]: test ellipse: [----------------------- 216s LAMMPS (4 Feb 2025) 216s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 216s using 1 OpenMP thread(s) per MPI task 216s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 216s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 216s 2 by 1 by 1 MPI processor grid 216s Created 400 atoms 216s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 216s create_atoms CPU = 0.000 seconds 216s Setting atom values ... 216s 29 settings made for type/fraction 216s Setting atom values ... 216s 371 settings made for mass 216s Setting atom values ... 216s 29 settings made for mass 216s Setting atom values ... 216s 371 settings made for shape 216s Setting atom values ... 216s 29 settings made for shape 216s Setting atom values ... 216s 400 settings made for quat/random 216s 371 atoms in group spheroid 216s 216s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 216s 216s Your simulation uses code contributions which should be cited: 216s - pair gayberne command: doi:10.1063/1.3058435 216s The log file lists these citations in BibTeX format. 216s 216s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 216s 216s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 216s Neighbor list info ... 216s update: every = 1 steps, delay = 0 steps, check = yes 216s max neighbors/atom: 2000, page size: 100000 216s master list distance cutoff = 4.8 216s ghost atom cutoff = 4.8 216s binsize = 2.4, bins = 59 59 3 216s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 216s (1) pair gayberne, perpetual 216s attributes: half, newton on 216s pair build: half/bin/atomonly/newton 216s stencil: half/bin/2d 216s bin: standard 216s Setting up Verlet run ... 216s Unit style : lj 216s Current step : 0 216s Time step : 0.002 216s Per MPI rank memory allocation (min/avg/max) = 4.744 | 4.744 | 4.744 Mbytes 216s Step c_rot E_pair TotEng Press Volume 216s 0 2.3158404 0 2.394 0.04788 20000 216s 100 1.7101139 0 1.7678302 0.034413192 20548.286 216s 200 2.3115592 0 2.3895743 0.04649702 20556.796 216s 300 1.831333 0 1.8931405 0.041256922 18354.646 216s 400 2.1838099 -0.00017499954 2.2573384 0.066506278 13574.023 216s 500 1.9604824 -0.024753591 2.0018228 0.09726581 8392.5882 216s 600 1.983652 -0.13957983 1.858954 0.28044314 4590.4733 216s 700 2.0349282 -0.7537042 1.2545559 0.45904399 2452.437 216s 800 2.1883376 -1.7033514 0.37402366 1.4284826 1377.0458 216s 900 1.8893439 -3.2012297 -1.3190748 3.1235376 889.49388 216s 1000 1.5818588 -4.6980931 -3.1320854 3.6494701 700.71079 216s 1100 1.743968 -5.3117051 -3.573368 1.7907876 666.1204 216s 1200 2.1788951 -5.0690852 -2.8893841 1.0317884 697.08645 216s 1300 2.0067166 -4.6588703 -2.6387448 -0.19855863 763.72651 216s 1400 2.1020191 -4.2786372 -2.1756186 0.5410189 815.37712 216s 1500 1.805494 -4.1713612 -2.3732785 0.88817983 855.41486 216s 1600 2.1414975 -3.9792878 -1.8690882 0.79530679 899.00645 217s 1700 1.9971755 -3.8166601 -1.8380659 0.41343091 945.60821 217s 1800 2.0033499 -3.7524192 -1.7481879 0.76104974 973.71402 217s 1900 2.0083456 -3.7603247 -1.7442111 0.74095065 988.03964 217s 2000 1.952518 -3.6531717 -1.7078819 0.50248125 989.96894 217s Loop time of 0.369758 on 2 procs for 2000 steps with 400 atoms 217s 217s Performance: 934666.121 tau/day, 5408.947 timesteps/s, 2.164 Matom-step/s 217s 95.8% CPU use with 2 MPI tasks x 1 OpenMP threads 217s 217s MPI task timing breakdown: 217s Section | min time | avg time | max time |%varavg| %total 217s --------------------------------------------------------------- 217s Pair | 0.17186 | 0.19495 | 0.21805 | 5.2 | 52.72 217s Neigh | 0.01052 | 0.010533 | 0.010547 | 0.0 | 2.85 217s Comm | 0.035311 | 0.058556 | 0.081802 | 9.6 | 15.84 217s Output | 0.016506 | 0.01664 | 0.016773 | 0.1 | 4.50 217s Modify | 0.080543 | 0.080763 | 0.080983 | 0.1 | 21.84 217s Other | | 0.008315 | | | 2.25 217s 217s Nlocal: 200 ave 211 max 189 min 217s Histogram: 1 0 0 0 0 0 0 0 0 1 217s Nghost: 215 ave 217 max 213 min 217s Histogram: 1 0 0 0 0 0 0 0 0 1 217s Neighs: 1561 ave 1651 max 1471 min 217s Histogram: 1 0 0 0 0 0 0 0 0 1 217s 217s Total # of neighbors = 3122 217s Ave neighs/atom = 7.805 217s Neighbor list builds = 346 217s Dangerous builds = 0 217s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 217s Setting up Verlet run ... 217s Unit style : lj 217s Current step : 2000 217s Time step : 0.002 217s Per MPI rank memory allocation (min/avg/max) = 6.899 | 6.899 | 6.899 Mbytes 217s Step c_rot E_pair TotEng Press Volume 217s 2000 1.952518 -3.6531717 -1.7078819 0.50248125 989.96894 217s 2100 1.9040485 -3.6005672 -1.6802923 0.39862439 989.96894 217s 2200 1.8951971 -3.5921565 -1.6947174 1.0260215 989.96894 217s 2300 2.0029242 -3.7081932 -1.6838651 0.66970247 989.96894 217s 2400 2.0271892 -3.7314226 -1.7100026 0.89700311 989.96894 217s 2500 2.0661249 -3.7753498 -1.7024133 0.57670823 989.96894 217s 2600 2.0610735 -3.7707906 -1.7111976 0.90913324 989.96894 217s 2700 2.0505182 -3.759913 -1.7337449 0.65661806 989.96894 217s 2800 2.1106611 -3.8219493 -1.7370736 0.55275858 989.96894 217s 2900 2.0346954 -3.7427335 -1.7135138 0.69791414 989.96894 217s 3000 2.0331857 -3.7398391 -1.751581 0.051416398 989.96894 217s 3100 1.9983775 -3.7074162 -1.7156494 0.75643227 989.96894 217s 3200 2.1297315 -3.8450391 -1.7173438 1.0595574 989.96894 217s 3300 2.0798058 -3.793496 -1.6857257 1.1572151 989.96894 217s 3400 2.1441179 -3.8596018 -1.7011723 0.61261295 989.96894 217s 3500 2.1035108 -3.8190033 -1.6997662 0.99653756 989.96894 217s 3600 2.0856923 -3.7988484 -1.7184312 1.1264485 989.96894 217s 3700 2.1029212 -3.8148833 -1.7096948 0.96828131 989.96894 217s 3800 2.0253659 -3.7349822 -1.7382292 0.56254829 989.96894 217s 3900 1.9686055 -3.6775217 -1.7283017 1.2472863 989.96894 217s 4000 2.0951026 -3.8095594 -1.6876041 0.79798093 989.96894 217s Loop time of 0.357838 on 2 procs for 2000 steps with 400 atoms 217s 217s Performance: 965799.422 tau/day, 5589.117 timesteps/s, 2.236 Matom-step/s 217s 98.4% CPU use with 2 MPI tasks x 1 OpenMP threads 217s 217s MPI task timing breakdown: 217s Section | min time | avg time | max time |%varavg| %total 217s --------------------------------------------------------------- 217s Pair | 0.24707 | 0.24802 | 0.24898 | 0.2 | 69.31 217s Neigh | 0.0026373 | 0.0029549 | 0.0032725 | 0.6 | 0.83 217s Comm | 0.038455 | 0.039045 | 0.039634 | 0.3 | 10.91 217s Output | 0.016864 | 0.01701 | 0.017157 | 0.1 | 4.75 217s Modify | 0.03768 | 0.041891 | 0.046103 | 2.1 | 11.71 217s Other | | 0.008916 | | | 2.49 217s 217s Nlocal: 200 ave 227 max 173 min 217s Histogram: 1 0 0 0 0 0 0 0 0 1 217s Nghost: 211 ave 219 max 203 min 217s Histogram: 1 0 0 0 0 0 0 0 0 1 217s Neighs: 1650.5 ave 1950 max 1351 min 217s Histogram: 1 0 0 0 0 0 0 0 0 1 217s 217s Total # of neighbors = 3301 217s Ave neighs/atom = 8.2525 217s Neighbor list builds = 49 217s Dangerous builds = 0 217s Total wall time: 0:00:00 217s LAMMPS (4 Feb 2025) 218s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 218s using 1 OpenMP thread(s) per MPI task 218s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 218s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 218s 1 by 1 by 1 MPI processor grid 218s Created 400 atoms 218s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 218s create_atoms CPU = 0.000 seconds 218s Setting atom values ... 218s 29 settings made for type/fraction 218s Setting atom values ... 218s 371 settings made for mass 218s Setting atom values ... 218s 29 settings made for mass 218s Setting atom values ... 218s 371 settings made for shape 218s Setting atom values ... 218s 29 settings made for shape 218s Setting atom values ... 218s 400 settings made for quat/random 218s 371 atoms in group spheroid 218s 218s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 218s 218s Your simulation uses code contributions which should be cited: 218s - pair gayberne command: doi:10.1063/1.3058435 218s The log file lists these citations in BibTeX format. 218s 218s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 218s 218s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 218s Neighbor list info ... 218s update: every = 1 steps, delay = 0 steps, check = yes 218s max neighbors/atom: 2000, page size: 100000 218s master list distance cutoff = 4.8 218s ghost atom cutoff = 4.8 218s binsize = 2.4, bins = 59 59 3 218s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 218s (1) pair gayberne, perpetual 218s attributes: half, newton on 218s pair build: half/bin/atomonly/newton 218s stencil: half/bin/2d 218s bin: standard 218s Setting up Verlet run ... 218s Unit style : lj 218s Current step : 0 218s Time step : 0.002 218s Per MPI rank memory allocation (min/avg/max) = 4.753 | 4.753 | 4.753 Mbytes 218s Step c_rot E_pair TotEng Press Volume 218s 0 2.3158404 0 2.394 0.04788 20000 218s 100 1.7101139 0 1.7678302 0.034413192 20548.286 218s 200 2.3115592 0 2.3895743 0.04649702 20556.796 218s 300 1.831333 0 1.8931405 0.041256922 18354.646 218s 400 2.1838099 -0.00017499954 2.2573384 0.066506278 13574.023 218s 500 1.9604824 -0.024753591 2.0018228 0.09726581 8392.5882 218s 600 1.983652 -0.13957983 1.858954 0.28044314 4590.4733 218s 700 2.0349282 -0.7537042 1.2545559 0.45904399 2452.437 218s 800 2.1883376 -1.7033514 0.37402366 1.4284826 1377.0458 218s 900 1.8893439 -3.2012297 -1.3190748 3.1235376 889.49388 218s 1000 1.5818588 -4.6980931 -3.1320854 3.6494701 700.71079 218s 1100 1.743968 -5.3117051 -3.573368 1.7907876 666.1204 218s 1200 2.1788951 -5.0690852 -2.8893841 1.0317884 697.08645 218s 1300 2.0067166 -4.6588703 -2.6387448 -0.19855863 763.72651 218s 1400 2.1020191 -4.2786372 -2.1756186 0.5410189 815.37712 218s 1500 1.805494 -4.1713612 -2.3732785 0.88817983 855.41486 218s 1600 2.1414975 -3.9792878 -1.8690882 0.79530679 899.00645 218s 1700 1.9971755 -3.8166601 -1.8380659 0.41343092 945.60821 218s 1800 2.0033499 -3.7524192 -1.7481879 0.76104975 973.71402 218s 1900 2.0083456 -3.7603247 -1.7442111 0.74095064 988.03964 218s 2000 1.952518 -3.6531717 -1.7078819 0.50248128 989.96894 218s Loop time of 0.572693 on 1 procs for 2000 steps with 400 atoms 218s 218s Performance: 603465.094 tau/day, 3492.275 timesteps/s, 1.397 Matom-step/s 218s 99.3% CPU use with 1 MPI tasks x 1 OpenMP threads 218s 218s MPI task timing breakdown: 218s Section | min time | avg time | max time |%varavg| %total 218s --------------------------------------------------------------- 218s Pair | 0.38378 | 0.38378 | 0.38378 | 0.0 | 67.01 218s Neigh | 0.020234 | 0.020234 | 0.020234 | 0.0 | 3.53 218s Comm | 0.010405 | 0.010405 | 0.010405 | 0.0 | 1.82 218s Output | 0.019594 | 0.019594 | 0.019594 | 0.0 | 3.42 218s Modify | 0.13391 | 0.13391 | 0.13391 | 0.0 | 23.38 218s Other | | 0.00477 | | | 0.83 218s 218s Nlocal: 400 ave 400 max 400 min 218s Histogram: 1 0 0 0 0 0 0 0 0 0 218s Nghost: 276 ave 276 max 276 min 218s Histogram: 1 0 0 0 0 0 0 0 0 0 218s Neighs: 3122 ave 3122 max 3122 min 218s Histogram: 1 0 0 0 0 0 0 0 0 0 218s 218s Total # of neighbors = 3122 218s Ave neighs/atom = 7.805 218s Neighbor list builds = 346 218s Dangerous builds = 0 218s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 218s Setting up Verlet run ... 218s Unit style : lj 218s Current step : 2000 218s Time step : 0.002 218s Per MPI rank memory allocation (min/avg/max) = 6.926 | 6.926 | 6.926 Mbytes 218s Step c_rot E_pair TotEng Press Volume 218s 2000 1.952518 -3.6531717 -1.7078819 0.50248128 989.96894 218s 2100 1.9040485 -3.6005672 -1.6802923 0.39862438 989.96894 218s 2200 1.8951971 -3.5921566 -1.6947174 1.0260215 989.96894 218s 2300 2.0029244 -3.7081934 -1.6838652 0.66970135 989.96894 218s 2400 2.0271885 -3.731422 -1.7100022 0.89700608 989.96894 218s 2500 2.066122 -3.7753468 -1.7024127 0.57671483 989.96894 218s 2600 2.0610701 -3.7707871 -1.7111979 0.90915268 989.96894 218s 2700 2.0505226 -3.7599192 -1.7337496 0.65661546 989.96894 218s 2800 2.1106391 -3.8219307 -1.7370733 0.55280503 989.96894 218s 2900 2.0347598 -3.7428025 -1.7135189 0.69781833 989.96894 218s 3000 2.0330208 -3.7396616 -1.7515118 0.052338568 989.96894 218s 3100 1.9979524 -3.7070895 -1.715955 0.75689837 989.96894 218s 3200 2.1279004 -3.8431144 -1.7172074 1.0681978 989.96894 218s 3300 2.0795122 -3.7933999 -1.6843677 1.160141 989.96894 218s 3400 2.1458506 -3.8618217 -1.7011471 0.60302387 989.96894 218s 3500 2.0922186 -3.8066733 -1.7042032 1.020929 989.96894 218s 3600 2.0923687 -3.8049721 -1.7151823 0.97720853 989.96894 218s 3700 2.1082732 -3.8201734 -1.6945215 0.97495003 989.96894 218s 3800 2.0883146 -3.8011237 -1.6897726 0.59373082 989.96894 218s 3900 2.1821449 -3.8971145 -1.6976484 0.53241288 989.96894 218s 4000 2.103916 -3.8154046 -1.6865256 0.96939819 989.96894 218s Loop time of 0.618312 on 1 procs for 2000 steps with 400 atoms 218s 218s Performance: 558940.937 tau/day, 3234.612 timesteps/s, 1.294 Matom-step/s 218s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads 218s 218s MPI task timing breakdown: 218s Section | min time | avg time | max time |%varavg| %total 218s --------------------------------------------------------------- 218s Pair | 0.49561 | 0.49561 | 0.49561 | 0.0 | 80.15 218s Neigh | 0.0059877 | 0.0059877 | 0.0059877 | 0.0 | 0.97 218s Comm | 0.0116 | 0.0116 | 0.0116 | 0.0 | 1.88 218s Output | 0.019322 | 0.019322 | 0.019322 | 0.0 | 3.13 218s Modify | 0.081764 | 0.081764 | 0.081764 | 0.0 | 13.22 218s Other | | 0.004032 | | | 0.65 218s 218s Nlocal: 400 ave 400 max 400 min 218s Histogram: 1 0 0 0 0 0 0 0 0 0 218s Nghost: 284 ave 284 max 284 min 218s Histogram: 1 0 0 0 0 0 0 0 0 0 218s Neighs: 3287 ave 3287 max 3287 min 218s Histogram: 1 0 0 0 0 0 0 0 0 0 218s 218s Total # of neighbors = 3287 218s Ave neighs/atom = 8.2175 218s Neighbor list builds = 51 218s Dangerous builds = 0 218s Total wall time: 0:00:01 218s LAMMPS (4 Feb 2025) 218s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 218s using 1 OpenMP thread(s) per MPI task 218s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 218s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 218s 2 by 1 by 1 MPI processor grid 218s Created 400 atoms 218s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 218s create_atoms CPU = 0.000 seconds 218s Setting atom values ... 218s 29 settings made for type/fraction 218s Setting atom values ... 218s 371 settings made for mass 218s Setting atom values ... 218s 29 settings made for mass 218s Setting atom values ... 218s 371 settings made for shape 218s Setting atom values ... 218s 29 settings made for shape 218s Setting atom values ... 218s 400 settings made for quat/random 218s 371 atoms in group spheroid 218s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 218s Neighbor list info ... 218s update: every = 1 steps, delay = 0 steps, check = yes 218s max neighbors/atom: 2000, page size: 100000 218s master list distance cutoff = 4.8 218s ghost atom cutoff = 4.8 218s binsize = 2.4, bins = 59 59 3 218s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 218s (1) pair resquared, perpetual 218s attributes: half, newton on 218s pair build: half/bin/atomonly/newton 218s stencil: half/bin/2d 218s bin: standard 218s Setting up Verlet run ... 218s Unit style : lj 218s Current step : 0 218s Time step : 0.002 218s Per MPI rank memory allocation (min/avg/max) = 4.744 | 4.744 | 4.744 Mbytes 218s Step c_rot E_pair TotEng Press Volume 218s 0 2.3158404 0 2.394 0.04788 20000 218s 100 1.7101139 0 1.7678302 0.034413192 20548.286 218s 200 2.3115592 0 2.3895743 0.04649702 20556.796 218s 300 1.831333 0 1.8931405 0.041256922 18354.646 218s 400 2.1837684 -8.9738883e-06 2.2574616 0.066522186 13574.035 218s 500 1.9709471 0.0022832653 2.017568 0.098398099 8395.6884 218s 600 2.1312025 0.15575534 2.2465639 0.43878461 4664.4094 218s 700 1.9768729 0.20704026 2.1544534 0.85727857 2661.7782 219s 800 1.8049358 0.20410493 1.965827 1.2647972 1769.9195 219s 900 1.8115555 0.2163004 1.9984639 1.6554526 1443.3838 219s 1000 1.9171641 0.2328859 2.1621182 1.7795638 1436.7766 219s 1100 1.9523886 0.09158383 2.0589755 0.91188602 1668.1861 219s 1200 2.0844678 0.062228051 2.0997798 0.63282414 2088.0586 219s 1300 1.9225253 0.052820284 1.9484124 0.44379326 2643.4175 219s 1400 2.1265088 0.033305088 2.1345672 0.34979266 3172.6223 219s 1500 1.9551661 0.053995306 2.0077177 0.34810901 3444.8372 219s 1600 2.15222 0.057084004 2.1910214 0.39212275 3290.66 219s 1700 2.0126393 0.092807299 2.0739086 0.53567035 2812.2166 219s 1800 2.1109716 0.18678852 2.2572287 1.0092292 2267.5536 219s 1900 1.9107655 0.26801333 2.1635401 1.5374301 1862.3897 219s 2000 1.9034522 0.24431156 2.1576939 1.5998792 1639.6982 219s Loop time of 0.545209 on 2 procs for 2000 steps with 400 atoms 219s 219s Performance: 633885.627 tau/day, 3668.320 timesteps/s, 1.467 Matom-step/s 219s 98.3% CPU use with 2 MPI tasks x 1 OpenMP threads 219s 219s MPI task timing breakdown: 219s Section | min time | avg time | max time |%varavg| %total 219s --------------------------------------------------------------- 219s Pair | 0.38207 | 0.39079 | 0.39951 | 1.4 | 71.68 219s Neigh | 0.010844 | 0.01091 | 0.010977 | 0.1 | 2.00 219s Comm | 0.03225 | 0.040761 | 0.049272 | 4.2 | 7.48 219s Output | 0.01607 | 0.016215 | 0.016361 | 0.1 | 2.97 219s Modify | 0.077955 | 0.078752 | 0.079549 | 0.3 | 14.44 219s Other | | 0.007779 | | | 1.43 219s 219s Nlocal: 200 ave 210 max 190 min 219s Histogram: 1 0 0 0 0 0 0 0 0 1 219s Nghost: 164 ave 168 max 160 min 219s Histogram: 1 0 0 0 0 0 0 0 0 1 219s Neighs: 910 ave 958 max 862 min 219s Histogram: 1 0 0 0 0 0 0 0 0 1 219s 219s Total # of neighbors = 1820 219s Ave neighs/atom = 4.55 219s Neighbor list builds = 420 219s Dangerous builds = 0 219s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 219s Setting up Verlet run ... 219s Unit style : lj 219s Current step : 2000 219s Time step : 0.002 219s Per MPI rank memory allocation (min/avg/max) = 6.89 | 6.89 | 6.89 Mbytes 219s Step c_rot E_pair TotEng Press Volume 219s 2000 1.9034522 0.24431156 2.1576939 1.5998792 1639.6982 219s 2100 1.9990056 0.14555548 2.132148 1.1813518 1639.6982 219s 2200 1.9913934 0.15343329 2.1279388 1.2079524 1639.6982 219s 2300 1.9931915 0.15156716 2.1646511 1.1963228 1639.6982 219s 2400 1.9969018 0.14779678 2.1413044 1.1999441 1639.6982 219s 2500 1.9401284 0.20640998 2.168038 1.4643778 1639.6982 219s 2600 1.9492999 0.19710633 2.136292 1.3812079 1639.6982 219s 2700 2.0106221 0.13364602 2.1384766 1.1322764 1639.6982 219s 2800 1.9890373 0.15589592 2.1204126 1.2343376 1639.6982 219s 2900 1.9922852 0.15256975 2.0956529 1.2419165 1639.6982 219s 3000 1.9618081 0.18405955 2.1392907 1.3468024 1639.6982 219s 3100 1.920815 0.22640753 2.1223513 1.6487874 1639.6982 219s 3200 1.9201455 0.22718151 2.1360379 1.537008 1639.6982 219s 3300 2.0073207 0.13690691 2.1185858 1.1973827 1639.6982 220s 3400 2.0179674 0.12601938 2.1227815 1.0847666 1639.6982 220s 3500 1.9561038 0.18991636 2.11504 1.3377604 1639.6982 220s 3600 1.9971208 0.14756321 2.1401442 1.2026471 1639.6982 220s 3700 1.9731986 0.17227975 2.1472974 1.2730305 1639.6982 220s 3800 2.0000945 0.1444447 2.0994588 1.1502433 1639.6982 220s 3900 1.9911415 0.15372488 2.1423535 1.227966 1639.6982 220s 4000 1.9822293 0.16299254 2.0899439 1.2166942 1639.6982 220s Loop time of 0.836152 on 2 procs for 2000 steps with 400 atoms 220s 220s Performance: 413322.128 tau/day, 2391.910 timesteps/s, 956.764 katom-step/s 220s 99.4% CPU use with 2 MPI tasks x 1 OpenMP threads 220s 220s MPI task timing breakdown: 220s Section | min time | avg time | max time |%varavg| %total 220s --------------------------------------------------------------- 220s Pair | 0.67204 | 0.70618 | 0.74031 | 4.1 | 84.46 220s Neigh | 0.0020864 | 0.0022172 | 0.002348 | 0.3 | 0.27 220s Comm | 0.028096 | 0.062505 | 0.096914 | 13.8 | 7.48 220s Output | 0.016186 | 0.01632 | 0.016454 | 0.1 | 1.95 220s Modify | 0.03969 | 0.041745 | 0.043799 | 1.0 | 4.99 220s Other | | 0.007188 | | | 0.86 220s 220s Nlocal: 200 ave 212 max 188 min 220s Histogram: 1 0 0 0 0 0 0 0 0 1 220s Nghost: 171.5 ave 173 max 170 min 220s Histogram: 1 0 0 0 0 0 0 0 0 1 220s Neighs: 880.5 ave 946 max 815 min 220s Histogram: 1 0 0 0 0 0 0 0 0 1 220s 220s Total # of neighbors = 1761 220s Ave neighs/atom = 4.4025 220s Neighbor list builds = 49 220s Dangerous builds = 0 220s Total wall time: 0:00:01 220s LAMMPS (4 Feb 2025) 221s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 221s using 1 OpenMP thread(s) per MPI task 221s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 221s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 221s 1 by 1 by 1 MPI processor grid 221s Created 400 atoms 221s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 221s create_atoms CPU = 0.000 seconds 221s Setting atom values ... 221s 29 settings made for type/fraction 221s Setting atom values ... 221s 371 settings made for mass 221s Setting atom values ... 221s 29 settings made for mass 221s Setting atom values ... 221s 371 settings made for shape 221s Setting atom values ... 221s 29 settings made for shape 221s Setting atom values ... 221s 400 settings made for quat/random 221s 371 atoms in group spheroid 221s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 221s Neighbor list info ... 221s update: every = 1 steps, delay = 0 steps, check = yes 221s max neighbors/atom: 2000, page size: 100000 221s master list distance cutoff = 4.8 221s ghost atom cutoff = 4.8 221s binsize = 2.4, bins = 59 59 3 221s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 221s (1) pair resquared, perpetual 221s attributes: half, newton on 221s pair build: half/bin/atomonly/newton 221s stencil: half/bin/2d 221s bin: standard 221s Setting up Verlet run ... 221s Unit style : lj 221s Current step : 0 221s Time step : 0.002 221s Per MPI rank memory allocation (min/avg/max) = 4.753 | 4.753 | 4.753 Mbytes 221s Step c_rot E_pair TotEng Press Volume 221s 0 2.3158404 0 2.394 0.04788 20000 221s 100 1.7101139 0 1.7678302 0.034413192 20548.286 221s 200 2.3115592 0 2.3895743 0.04649702 20556.796 221s 300 1.831333 0 1.8931405 0.041256922 18354.646 221s 400 2.1837684 -8.9738883e-06 2.2574616 0.066522186 13574.035 221s 500 1.9709471 0.0022832653 2.017568 0.098398099 8395.6884 221s 600 2.1312025 0.15575534 2.2465639 0.43878461 4664.4094 221s 700 1.9768729 0.20704026 2.1544534 0.85727857 2661.7782 221s 800 1.8049358 0.20410493 1.965827 1.2647972 1769.9195 221s 900 1.8115555 0.2163004 1.9984639 1.6554526 1443.3838 221s 1000 1.9171641 0.2328859 2.1621182 1.7795638 1436.7766 221s 1100 1.9523886 0.09158383 2.0589755 0.91188602 1668.1861 221s 1200 2.0844678 0.062228051 2.0997798 0.63282414 2088.0586 221s 1300 1.9225253 0.052820284 1.9484124 0.44379326 2643.4175 221s 1400 2.1265088 0.033305088 2.1345672 0.34979266 3172.6223 221s 1500 1.9551661 0.053995306 2.0077177 0.34810901 3444.8372 221s 1600 2.15222 0.057084004 2.1910214 0.39212275 3290.66 221s 1700 2.0126393 0.092807299 2.0739086 0.53567035 2812.2166 221s 1800 2.1109716 0.18678852 2.2572287 1.0092292 2267.5536 221s 1900 1.9107655 0.26801333 2.1635401 1.5374301 1862.3897 221s 2000 1.9034522 0.24431156 2.1576939 1.5998792 1639.6982 221s Loop time of 0.968269 on 1 procs for 2000 steps with 400 atoms 221s 221s Performance: 356925.446 tau/day, 2065.541 timesteps/s, 826.216 katom-step/s 221s 99.2% CPU use with 1 MPI tasks x 1 OpenMP threads 221s 221s MPI task timing breakdown: 221s Section | min time | avg time | max time |%varavg| %total 221s --------------------------------------------------------------- 221s Pair | 0.77736 | 0.77736 | 0.77736 | 0.0 | 80.28 221s Neigh | 0.021525 | 0.021525 | 0.021525 | 0.0 | 2.22 221s Comm | 0.0082318 | 0.0082318 | 0.0082318 | 0.0 | 0.85 221s Output | 0.019878 | 0.019878 | 0.019878 | 0.0 | 2.05 221s Modify | 0.13602 | 0.13602 | 0.13602 | 0.0 | 14.05 222s Other | | 0.005257 | | | 0.54 222s 222s Nlocal: 400 ave 400 max 400 min 222s Histogram: 1 0 0 0 0 0 0 0 0 0 222s Nghost: 206 ave 206 max 206 min 222s Histogram: 1 0 0 0 0 0 0 0 0 0 222s Neighs: 1820 ave 1820 max 1820 min 222s Histogram: 1 0 0 0 0 0 0 0 0 0 222s 222s Total # of neighbors = 1820 222s Ave neighs/atom = 4.55 222s Neighbor list builds = 420 222s Dangerous builds = 0 222s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 222s Setting up Verlet run ... 222s Unit style : lj 222s Current step : 2000 222s Time step : 0.002 222s Per MPI rank memory allocation (min/avg/max) = 6.917 | 6.917 | 6.917 Mbytes 222s Step c_rot E_pair TotEng Press Volume 222s 2000 1.9034522 0.24431156 2.1576939 1.5998792 1639.6982 222s 2100 1.9990056 0.14555548 2.132148 1.1813518 1639.6982 222s 2200 1.9913934 0.15343329 2.1279388 1.2079524 1639.6982 222s 2300 1.9931915 0.15156716 2.1646511 1.1963228 1639.6982 222s 2400 1.9969018 0.14779678 2.1413044 1.1999441 1639.6982 222s 2500 1.9401284 0.20640998 2.168038 1.4643778 1639.6982 222s 2600 1.9492999 0.19710633 2.136292 1.3812079 1639.6982 222s 2700 2.0106221 0.13364602 2.1384766 1.1322764 1639.6982 222s 2800 1.9890373 0.15589593 2.1204126 1.2343376 1639.6982 222s 2900 1.9922852 0.15256971 2.0956529 1.2419163 1639.6982 222s 3000 1.9618081 0.18405956 2.1392907 1.3468024 1639.6982 222s 3100 1.9208147 0.22640783 2.1223514 1.6487893 1639.6982 222s 3200 1.9201454 0.2271816 2.136038 1.5370083 1639.6982 222s 3300 2.0073199 0.13690769 2.1185864 1.1973892 1639.6982 222s 3400 2.0179674 0.12601938 2.1227814 1.0847667 1639.6982 222s 3500 1.9561059 0.1899142 2.1150384 1.3377509 1639.6982 222s 3600 1.9971218 0.14756225 2.1401434 1.2026401 1639.6982 222s 3700 1.9731874 0.17229133 2.1473283 1.2730808 1639.6982 222s 3800 2.0000992 0.14443988 2.0994807 1.1502356 1639.6982 222s 3900 1.9911429 0.15372349 2.1424035 1.227982 1639.6982 222s 4000 1.9823333 0.16288519 2.0899581 1.2162824 1639.6982 222s Loop time of 1.52872 on 1 procs for 2000 steps with 400 atoms 222s 222s Performance: 226070.831 tau/day, 1308.280 timesteps/s, 523.312 katom-step/s 222s 99.6% CPU use with 1 MPI tasks x 1 OpenMP threads 222s 222s MPI task timing breakdown: 222s Section | min time | avg time | max time |%varavg| %total 222s --------------------------------------------------------------- 222s Pair | 1.4077 | 1.4077 | 1.4077 | 0.0 | 92.08 222s Neigh | 0.0043223 | 0.0043223 | 0.0043223 | 0.0 | 0.28 222s Comm | 0.0092917 | 0.0092917 | 0.0092917 | 0.0 | 0.61 222s Output | 0.020053 | 0.020053 | 0.020053 | 0.0 | 1.31 222s Modify | 0.082878 | 0.082878 | 0.082878 | 0.0 | 5.42 222s Other | | 0.004493 | | | 0.29 222s 222s Nlocal: 400 ave 400 max 400 min 222s Histogram: 1 0 0 0 0 0 0 0 0 0 222s Nghost: 215 ave 215 max 215 min 222s Histogram: 1 0 0 0 0 0 0 0 0 0 222s Neighs: 1761 ave 1761 max 1761 min 222s Histogram: 1 0 0 0 0 0 0 0 0 0 222s 222s Total # of neighbors = 1761 222s Ave neighs/atom = 4.4025 222s Neighbor list builds = 49 222s Dangerous builds = 0 222s Total wall time: 0:00:02 222s run: OK 223s autopkgtest [00:53:01]: test ellipse: -----------------------] 223s ellipse PASS 223s autopkgtest [00:53:01]: test ellipse: - - - - - - - - - - results - - - - - - - - - - 224s autopkgtest [00:53:02]: test flow: preparing testbed 224s Reading package lists... 224s Building dependency tree... 224s Reading state information... 224s Solving dependencies... 225s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 226s autopkgtest [00:53:04]: test flow: [----------------------- 226s LAMMPS (4 Feb 2025) 226s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 226s using 1 OpenMP thread(s) per MPI task 226s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 226s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 226s 2 by 1 by 1 MPI processor grid 226s Created 420 atoms 226s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 226s create_atoms CPU = 0.000 seconds 226s 60 atoms in group lower 226s 60 atoms in group upper 226s 120 atoms in group boundary 226s 300 atoms in group flow 226s Setting atom values ... 226s 60 settings made for type 226s Setting atom values ... 226s 60 settings made for type 226s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:551) 226s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 226s Neighbor list info ... 226s update: every = 1 steps, delay = 5 steps, check = yes 226s max neighbors/atom: 2000, page size: 100000 226s master list distance cutoff = 1.42246 226s ghost atom cutoff = 1.42246 226s binsize = 0.71123, bins = 37 32 1 226s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 226s (1) pair lj/cut, perpetual 226s attributes: half, newton on 226s pair build: half/bin/atomonly/newton 226s stencil: half/bin/2d 226s bin: standard 226s Setting up Verlet run ... 226s Unit style : lj 226s Current step : 0 226s Time step : 0.003 226s Per MPI rank memory allocation (min/avg/max) = 3.044 | 3.044 | 3.044 Mbytes 226s Step Temp E_pair E_mol TotEng Press Volume 226s 0 1 0 0 0.71190476 0.52314537 571.54286 226s 500 1.0951876 -0.33403931 0 0.44562996 3.2502319 571.54286 226s 1000 1 -0.3731019 0 0.33880286 2.8561715 571.54286 226s 1500 1.0366879 -0.36031105 0 0.37771198 3.0196355 571.54286 226s 2000 1 -0.41053025 0 0.30137451 2.8651905 571.54286 226s 2500 1.1226126 -0.37018872 0 0.42900451 2.9459225 571.54286 226s 3000 1 -0.40149829 0 0.31040647 2.7056256 571.54286 226s 3500 1.071429 -0.46774125 0 0.29501417 2.5582838 571.54286 226s 4000 1 -0.39054248 0 0.32136228 2.4314528 571.54286 226s 4500 1.029458 -0.40311018 0 0.32976584 2.5012442 571.54286 226s 5000 1 -0.44252019 0 0.26938457 2.3566317 571.54286 226s 5500 1.0715559 -0.4771158 0 0.28572997 2.420979 571.54286 226s 6000 1 -0.42490153 0 0.28700323 2.4032097 571.54286 226s 6500 1.1729217 -0.43515146 0 0.39985708 2.3670704 571.54286 226s 7000 1 -0.4539943 0 0.25791046 2.36148 571.54286 226s 7500 1.1676524 -0.40784405 0 0.42341328 2.699336 571.54286 226s 8000 1 -0.37626352 0 0.33564124 2.8174026 571.54286 226s 8500 1.1583539 -0.41258281 0 0.41205487 2.6617634 571.54286 226s 9000 1 -0.42918407 0 0.28272069 2.3090418 571.54286 226s 9500 1.0432103 -0.39042315 0 0.3522432 2.6910698 571.54286 226s 10000 1 -0.4676995 0 0.24420526 2.3898708 571.54286 226s Loop time of 0.161735 on 2 procs for 10000 steps with 420 atoms 226s 226s Performance: 16026201.157 tau/day, 61829.480 timesteps/s, 25.968 Matom-step/s 226s 97.6% CPU use with 2 MPI tasks x 1 OpenMP threads 226s 226s MPI task timing breakdown: 226s Section | min time | avg time | max time |%varavg| %total 226s --------------------------------------------------------------- 226s Pair | 0.035391 | 0.035722 | 0.036052 | 0.2 | 22.09 226s Neigh | 0.020695 | 0.020768 | 0.020841 | 0.1 | 12.84 226s Comm | 0.060615 | 0.061604 | 0.062593 | 0.4 | 38.09 226s Output | 0.00033496 | 0.0011561 | 0.0019773 | 2.4 | 0.71 226s Modify | 0.025774 | 0.026144 | 0.026514 | 0.2 | 16.16 226s Other | | 0.01634 | | | 10.10 226s 226s Nlocal: 210 ave 214 max 206 min 226s Histogram: 1 0 0 0 0 0 0 0 0 1 226s Nghost: 51 ave 52 max 50 min 226s Histogram: 1 0 0 0 0 0 0 0 0 1 226s Neighs: 472 ave 494 max 450 min 226s Histogram: 1 0 0 0 0 0 0 0 0 1 226s 226s Total # of neighbors = 944 226s Ave neighs/atom = 2.247619 226s Neighbor list builds = 994 226s Dangerous builds = 0 226s Total wall time: 0:00:00 226s LAMMPS (4 Feb 2025) 226s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 226s using 1 OpenMP thread(s) per MPI task 226s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 226s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 226s 1 by 1 by 1 MPI processor grid 226s Created 420 atoms 226s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 226s create_atoms CPU = 0.000 seconds 226s 60 atoms in group lower 226s 60 atoms in group upper 226s 120 atoms in group boundary 226s 300 atoms in group flow 226s Setting atom values ... 226s 60 settings made for type 226s Setting atom values ... 226s 60 settings made for type 226s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:551) 226s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 226s Neighbor list info ... 226s update: every = 1 steps, delay = 5 steps, check = yes 226s max neighbors/atom: 2000, page size: 100000 226s master list distance cutoff = 1.42246 226s ghost atom cutoff = 1.42246 226s binsize = 0.71123, bins = 37 32 1 226s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 226s (1) pair lj/cut, perpetual 226s attributes: half, newton on 226s pair build: half/bin/atomonly/newton 226s stencil: half/bin/2d 226s bin: standard 226s Setting up Verlet run ... 226s Unit style : lj 226s Current step : 0 226s Time step : 0.003 226s Per MPI rank memory allocation (min/avg/max) = 3.048 | 3.048 | 3.048 Mbytes 226s Step Temp E_pair E_mol TotEng Press Volume 226s 0 1 0 0 0.71190476 0.52314537 571.54286 226s 500 1.0644427 -0.31382888 0 0.44395296 3.0013076 571.54286 226s 1000 1 -0.42965445 0 0.28225032 2.9612165 571.54286 226s 1500 1.0739874 -0.41189772 0 0.35267901 2.5621951 571.54286 226s 2000 1 -0.40814262 0 0.30376214 2.9229597 571.54286 226s 2500 1.193035 -0.38493995 0 0.46438736 2.8340607 571.54286 226s 3000 1 -0.45564537 0 0.2562594 2.7506498 571.54286 226s 3500 1.0626882 -0.45013361 0 0.30639918 2.5530157 571.54286 226s 4000 1 -0.39613722 0 0.31576755 2.4669827 571.54286 226s 4500 1.0832856 -0.43003699 0 0.34115919 2.2569491 571.54286 226s 5000 1 -0.42733451 0 0.28457025 2.4685826 571.54286 226s 5500 1.0413391 -0.39346589 0 0.34786835 2.6348761 571.54286 226s 6000 1 -0.42845926 0 0.2834455 2.4988125 571.54286 226s 6500 1.0890296 -0.43775517 0 0.33753016 2.4384217 571.54286 226s 7000 1 -0.46023483 0 0.25166993 2.4429964 571.54286 226s 7500 1.0644341 -0.45175861 0 0.3060171 2.4324515 571.54286 226s 8000 1 -0.43920605 0 0.27269871 2.6469713 571.54286 226s 8500 1.0647184 -0.45399641 0 0.3039817 2.5748114 571.54286 226s 9000 1 -0.46453995 0 0.24736482 2.6591355 571.54286 226s 9500 1.0123 -0.44029216 0 0.28036906 2.413597 571.54286 226s 10000 1 -0.43826448 0 0.27364028 2.3699706 571.54286 226s Loop time of 0.180687 on 1 procs for 10000 steps with 420 atoms 226s 226s Performance: 14345268.576 tau/day, 55344.400 timesteps/s, 23.245 Matom-step/s 226s 98.8% CPU use with 1 MPI tasks x 1 OpenMP threads 226s 226s MPI task timing breakdown: 226s Section | min time | avg time | max time |%varavg| %total 226s --------------------------------------------------------------- 226s Pair | 0.072478 | 0.072478 | 0.072478 | 0.0 | 40.11 226s Neigh | 0.038663 | 0.038663 | 0.038663 | 0.0 | 21.40 226s Comm | 0.0059048 | 0.0059048 | 0.0059048 | 0.0 | 3.27 226s Output | 0.00025312 | 0.00025312 | 0.00025312 | 0.0 | 0.14 226s Modify | 0.049145 | 0.049145 | 0.049145 | 0.0 | 27.20 226s Other | | 0.01424 | | | 7.88 226s 226s Nlocal: 420 ave 420 max 420 min 226s Histogram: 1 0 0 0 0 0 0 0 0 0 226s Nghost: 50 ave 50 max 50 min 226s Histogram: 1 0 0 0 0 0 0 0 0 0 226s Neighs: 946 ave 946 max 946 min 226s Histogram: 1 0 0 0 0 0 0 0 0 0 226s 226s Total # of neighbors = 946 226s Ave neighs/atom = 2.252381 226s Neighbor list builds = 979 226s Dangerous builds = 0 226s Total wall time: 0:00:00 227s LAMMPS (4 Feb 2025) 227s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 227s using 1 OpenMP thread(s) per MPI task 227s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 227s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 227s 2 by 1 by 1 MPI processor grid 227s Created 420 atoms 227s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 227s create_atoms CPU = 0.001 seconds 227s 60 atoms in group lower 227s 60 atoms in group upper 227s 120 atoms in group boundary 227s 300 atoms in group flow 227s Setting atom values ... 227s 60 settings made for type 227s Setting atom values ... 227s 60 settings made for type 227s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:551) 227s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 227s Neighbor list info ... 227s update: every = 1 steps, delay = 5 steps, check = yes 227s max neighbors/atom: 2000, page size: 100000 227s master list distance cutoff = 1.42246 227s ghost atom cutoff = 1.42246 227s binsize = 0.71123, bins = 37 32 1 227s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 227s (1) pair lj/cut, perpetual 227s attributes: half, newton on 227s pair build: half/bin/atomonly/newton 227s stencil: half/bin/2d 227s bin: standard 227s Setting up Verlet run ... 227s Unit style : lj 227s Current step : 0 227s Time step : 0.003 227s Per MPI rank memory allocation (min/avg/max) = 3.044 | 3.044 | 3.044 Mbytes 227s Step Temp E_pair E_mol TotEng Press Volume 227s 0 1 0 0 0.71190476 0.52314537 571.54286 227s 500 1.0758737 -0.36090417 0 0.40501541 2.7822308 575.0659 227s 1000 1 -0.35701441 0 0.35489035 2.0575313 585.71407 227s 1500 1.2368663 -0.37709732 0 0.50343367 1.4865879 587.193 227s 2000 1 -0.39362939 0 0.31827537 1.4236 578.9418 227s 2500 1.2272957 -0.42381901 0 0.44989865 1.4544608 570.15856 227s 3000 1 -0.4914342 0 0.22047056 1.534595 554.98633 227s 3500 1.2444794 -0.59760758 0 0.2883432 1.8754993 537.01599 227s 4000 1 -0.69890444 0 0.013000318 2.1406234 521.49815 227s 4500 1.2188346 -0.74991278 0 0.1177814 2.7508733 507.73977 227s 5000 1 -0.7445329 0 -0.032628135 3.1054873 501.68859 227s 5500 1.1836415 -0.76775125 0 0.074888789 2.6990153 506.01181 227s 6000 1 -0.7575268 0 -0.04562204 2.4858442 508.26846 227s 6500 1.2076032 -0.68884147 0 0.17085699 2.3143206 512.291 227s 7000 1 -0.66241571 0 0.049489051 2.0686009 516.38744 227s 7500 1.2123711 -0.71994819 0 0.14314459 2.1753937 513.88371 227s 8000 1 -0.71001477 0 0.0018899921 2.0630419 509.80458 227s 8500 1.1991563 -0.78355267 0 0.070132412 2.493712 504.22835 227s 9000 1 -0.72719051 0 -0.015285749 2.27793 505.75742 227s 9500 1.2073739 -0.76518329 0 0.094351911 2.5653732 503.29071 227s 10000 1 -0.78638614 0 -0.074481378 2.3564468 504.38491 227s Loop time of 0.183629 on 2 procs for 10000 steps with 420 atoms 227s 227s Performance: 14115388.366 tau/day, 54457.517 timesteps/s, 22.872 Matom-step/s 227s 97.6% CPU use with 2 MPI tasks x 1 OpenMP threads 227s 227s MPI task timing breakdown: 227s Section | min time | avg time | max time |%varavg| %total 227s --------------------------------------------------------------- 227s Pair | 0.038717 | 0.039019 | 0.039321 | 0.2 | 21.25 227s Neigh | 0.011595 | 0.011821 | 0.012047 | 0.2 | 6.44 227s Comm | 0.053291 | 0.055553 | 0.057814 | 1.0 | 30.25 227s Output | 0.00029272 | 0.0010935 | 0.0018943 | 2.4 | 0.60 227s Modify | 0.054768 | 0.056923 | 0.059079 | 0.9 | 31.00 227s Other | | 0.01922 | | | 10.47 227s 227s Nlocal: 210 ave 211 max 209 min 227s Histogram: 1 0 0 0 0 0 0 0 0 1 227s Nghost: 50 ave 51 max 49 min 227s Histogram: 1 0 0 0 0 0 0 0 0 1 227s Neighs: 563.5 ave 569 max 558 min 227s Histogram: 1 0 0 0 0 0 0 0 0 1 227s 227s Total # of neighbors = 1127 227s Ave neighs/atom = 2.6833333 227s Neighbor list builds = 560 227s Dangerous builds = 0 227s Total wall time: 0:00:00 227s LAMMPS (4 Feb 2025) 227s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 227s using 1 OpenMP thread(s) per MPI task 227s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 227s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 227s 1 by 1 by 1 MPI processor grid 227s Created 420 atoms 227s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 227s create_atoms CPU = 0.000 seconds 227s 60 atoms in group lower 227s 60 atoms in group upper 227s 120 atoms in group boundary 227s 300 atoms in group flow 227s Setting atom values ... 227s 60 settings made for type 227s Setting atom values ... 227s 60 settings made for type 227s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:551) 227s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 227s Neighbor list info ... 227s update: every = 1 steps, delay = 5 steps, check = yes 227s max neighbors/atom: 2000, page size: 100000 227s master list distance cutoff = 1.42246 227s ghost atom cutoff = 1.42246 227s binsize = 0.71123, bins = 37 32 1 227s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 227s (1) pair lj/cut, perpetual 227s attributes: half, newton on 227s pair build: half/bin/atomonly/newton 227s stencil: half/bin/2d 227s bin: standard 227s Setting up Verlet run ... 227s Unit style : lj 227s Current step : 0 227s Time step : 0.003 227s Per MPI rank memory allocation (min/avg/max) = 3.048 | 3.048 | 3.048 Mbytes 227s Step Temp E_pair E_mol TotEng Press Volume 227s 0 1 0 0 0.71190476 0.52314537 571.54286 227s 500 1.0990751 -0.36396768 0 0.41846911 2.522517 575.55806 227s 1000 1 -0.34609791 0 0.36580685 1.9736175 584.67179 227s 1500 1.2112861 -0.39062708 0 0.47169327 1.521881 587.24778 227s 2000 1 -0.39956949 0 0.31233527 1.2496669 583.00676 227s 2500 1.2236323 -0.40128447 0 0.46982521 1.427689 570.03729 227s 3000 1 -0.48849374 0 0.22341102 1.5091345 553.64637 227s 3500 1.2404604 -0.63017693 0 0.25291274 1.7681156 535.22588 227s 4000 1 -0.71303348 0 -0.001128721 2.2083475 516.7312 227s 4500 1.2316246 -0.77421749 0 0.10258194 2.5788522 503.1817 227s 5000 1 -0.7999552 0 -0.088050433 3.1546066 498.48431 227s 5500 1.2347442 -0.74592478 0 0.13309548 2.695455 502.87799 227s 6000 1 -0.67044678 0 0.041457981 2.2074541 513.82275 227s 6500 1.2102356 -0.63751404 0 0.22405846 1.9921588 517.21223 227s 7000 1 -0.65043667 0 0.061468095 1.8816222 517.22883 227s 7500 1.2366099 -0.68011129 0 0.20023717 2.0387578 515.33777 227s 8000 1 -0.72046833 0 -0.0085635721 2.1380846 510.42066 227s 8500 1.2219154 -0.79786917 0 0.072018214 2.2824348 503.99311 227s 9000 1 -0.78517366 0 -0.073268895 2.6920699 500.15016 227s 9500 1.1934208 -0.7468438 0 0.10275813 2.4971524 501.17896 227s 10000 1 -0.67478993 0 0.037114833 2.3681765 504.37054 227s Loop time of 0.213183 on 1 procs for 10000 steps with 420 atoms 227s 227s Performance: 12158593.656 tau/day, 46908.155 timesteps/s, 19.701 Matom-step/s 227s 99.2% CPU use with 1 MPI tasks x 1 OpenMP threads 227s 227s MPI task timing breakdown: 227s Section | min time | avg time | max time |%varavg| %total 227s --------------------------------------------------------------- 227s Pair | 0.077302 | 0.077302 | 0.077302 | 0.0 | 36.26 227s Neigh | 0.022266 | 0.022266 | 0.022266 | 0.0 | 10.44 227s Comm | 0.0049944 | 0.0049944 | 0.0049944 | 0.0 | 2.34 227s Output | 0.00028008 | 0.00028008 | 0.00028008 | 0.0 | 0.13 227s Modify | 0.09457 | 0.09457 | 0.09457 | 0.0 | 44.36 227s Other | | 0.01377 | | | 6.46 227s 227s Nlocal: 420 ave 420 max 420 min 227s Histogram: 1 0 0 0 0 0 0 0 0 0 227s Nghost: 51 ave 51 max 51 min 227s Histogram: 1 0 0 0 0 0 0 0 0 0 227s Neighs: 1150 ave 1150 max 1150 min 227s Histogram: 1 0 0 0 0 0 0 0 0 0 227s 227s Total # of neighbors = 1150 227s Ave neighs/atom = 2.7380952 227s Neighbor list builds = 563 227s Dangerous builds = 0 227s Total wall time: 0:00:00 227s run: OK 227s autopkgtest [00:53:05]: test flow: -----------------------] 228s flow PASS 228s autopkgtest [00:53:06]: test flow: - - - - - - - - - - results - - - - - - - - - - 228s autopkgtest [00:53:06]: test friction: preparing testbed 228s Reading package lists... 229s Building dependency tree... 229s Reading state information... 229s Solving dependencies... 229s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 230s autopkgtest [00:53:08]: test friction: [----------------------- 230s LAMMPS (4 Feb 2025) 230s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 230s using 1 OpenMP thread(s) per MPI task 230s Lattice spacing in x,y,z = 1.1326962 1.9618873 1.1326962 230s Created orthogonal box = (0 0 -0.28317404) to (56.634808 43.161521 0.28317404) 230s 2 by 1 by 1 MPI processor grid 230s Created 750 atoms 230s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 230s create_atoms CPU = 0.000 seconds 230s Created 750 atoms 230s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 230s create_atoms CPU = 0.000 seconds 230s Created 112 atoms 230s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 230s create_atoms CPU = 0.000 seconds 230s Created 112 atoms 230s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 230s create_atoms CPU = 0.000 seconds 230s 750 atoms in group lo 230s 862 atoms in group lo 230s 750 atoms in group hi 230s 862 atoms in group hi 230s 150 atoms in group lo-fixed 230s 150 atoms in group hi-fixed 230s 300 atoms in group boundary 230s 1424 atoms in group mobile 230s Setting atom values ... 230s 150 settings made for type 230s Setting atom values ... 230s 150 settings made for type 230s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:551) 230s Generated 0 of 6 mixed pair_coeff terms from geometric mixing rule 230s Neighbor list info ... 230s update: every = 1 steps, delay = 5 steps, check = yes 230s max neighbors/atom: 2000, page size: 100000 230s master list distance cutoff = 2.8 230s ghost atom cutoff = 2.8 230s binsize = 1.4, bins = 41 31 1 230s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 230s (1) pair lj/cut, perpetual 230s attributes: half, newton on 230s pair build: half/bin/atomonly/newton 230s stencil: half/bin/2d 230s bin: standard 230s Setting up Verlet run ... 230s Unit style : lj 230s Current step : 0 230s Time step : 0.0025 230s Per MPI rank memory allocation (min/avg/max) = 3.05 | 3.05 | 3.05 Mbytes 230s Step Temp E_pair E_mol TotEng Press Volume 230s 0 0.1 -3.1333672 0 -3.0920969 -1.1437663 2444.9333 231s 1000 0.081091635 -3.0930924 0 -3.0596257 -0.030127914 2444.9333 231s 2000 0.082087761 -3.0850474 0 -3.0511696 -0.44306626 2444.9333 231s 3000 0.088948343 -3.08139 0 -3.0446807 -0.25586469 2444.9333 231s 4000 0.091186493 -3.0656845 0 -3.0280515 -0.10060397 2444.9333 231s 5000 0.10802896 -3.0566391 0 -3.0120553 -0.13618814 2444.9333 231s 6000 0.1 -3.0489246 0 -3.0076543 -0.20314788 2444.9333 231s 7000 0.11587085 -3.0413277 0 -2.9935075 -0.37543775 2444.9333 231s 8000 0.1 -3.029647 0 -2.9883767 -0.41884104 2444.9333 232s 9000 0.11588457 -3.0253422 0 -2.9775163 -0.43584065 2444.9333 232s 10000 0.1 -3.0293042 0 -2.9880339 -0.36809832 2444.9333 232s 11000 0.11830962 -3.029318 0 -2.9804913 -0.44710474 2444.9333 232s 12000 0.1 -3.0283785 0 -2.9871082 -0.20225766 2444.9333 232s 13000 0.11646107 -3.0351824 0 -2.9871185 -0.46506235 2444.9333 232s 14000 0.11264391 -3.0399048 0 -2.9934163 -0.23851225 2444.9333 232s 15000 0.11397557 -3.0400714 0 -2.9930333 -0.27494778 2444.9333 232s 16000 0.11527553 -3.0423634 0 -2.9947889 -0.27314794 2444.9333 233s 17000 0.11820003 -3.0419531 0 -2.9931715 -0.39533728 2444.9333 233s 18000 0.11165087 -3.0494285 0 -3.0033499 -0.25447692 2444.9333 233s 19000 0.11450729 -3.0488755 0 -3.0016179 -0.27183418 2444.9333 233s 20000 0.1090499 -3.0490281 0 -3.0040229 -0.39612969 2444.9333 233s Loop time of 2.48776 on 2 procs for 20000 steps with 1724 atoms 233s 233s Performance: 1736499.266 tau/day, 8039.348 timesteps/s, 13.860 Matom-step/s 233s 99.4% CPU use with 2 MPI tasks x 1 OpenMP threads 233s 233s MPI task timing breakdown: 233s Section | min time | avg time | max time |%varavg| %total 233s --------------------------------------------------------------- 233s Pair | 1.6016 | 1.7326 | 1.8637 | 10.0 | 69.65 233s Neigh | 0.10006 | 0.11118 | 0.12229 | 3.3 | 4.47 233s Comm | 0.19535 | 0.34078 | 0.48621 | 24.9 | 13.70 233s Output | 0.00041824 | 0.00098756 | 0.0015569 | 0.0 | 0.04 233s Modify | 0.19711 | 0.21232 | 0.22752 | 3.3 | 8.53 233s Other | | 0.08986 | | | 3.61 233s 233s Nlocal: 862 ave 874 max 850 min 233s Histogram: 1 0 0 0 0 0 0 0 0 1 233s Nghost: 165.5 ave 166 max 165 min 233s Histogram: 1 0 0 0 0 0 0 0 0 1 233s Neighs: 7198 ave 7283 max 7113 min 233s Histogram: 1 0 0 0 0 0 0 0 0 1 233s 233s Total # of neighbors = 14396 233s Ave neighs/atom = 8.350348 233s Neighbor list builds = 720 233s Dangerous builds = 0 233s Total wall time: 0:00:02 233s LAMMPS (4 Feb 2025) 237s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 237s using 1 OpenMP thread(s) per MPI task 237s Lattice spacing in x,y,z = 1.1326962 1.9618873 1.1326962 237s Created orthogonal box = (0 0 -0.28317404) to (56.634808 43.161521 0.28317404) 237s 1 by 1 by 1 MPI processor grid 237s Created 750 atoms 237s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 237s create_atoms CPU = 0.000 seconds 237s Created 750 atoms 237s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 237s create_atoms CPU = 0.000 seconds 237s Created 112 atoms 237s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 237s create_atoms CPU = 0.000 seconds 237s Created 112 atoms 237s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 237s create_atoms CPU = 0.000 seconds 237s 750 atoms in group lo 237s 862 atoms in group lo 237s 750 atoms in group hi 237s 862 atoms in group hi 237s 150 atoms in group lo-fixed 237s 150 atoms in group hi-fixed 237s 300 atoms in group boundary 237s 1424 atoms in group mobile 237s Setting atom values ... 237s 150 settings made for type 237s Setting atom values ... 237s 150 settings made for type 237s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:551) 237s Generated 0 of 6 mixed pair_coeff terms from geometric mixing rule 237s Neighbor list info ... 237s update: every = 1 steps, delay = 5 steps, check = yes 237s max neighbors/atom: 2000, page size: 100000 237s master list distance cutoff = 2.8 237s ghost atom cutoff = 2.8 237s binsize = 1.4, bins = 41 31 1 237s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 237s (1) pair lj/cut, perpetual 237s attributes: half, newton on 237s pair build: half/bin/atomonly/newton 237s stencil: half/bin/2d 237s bin: standard 237s Setting up Verlet run ... 237s Unit style : lj 237s Current step : 0 237s Time step : 0.0025 237s Per MPI rank memory allocation (min/avg/max) = 3.059 | 3.059 | 3.059 Mbytes 237s Step Temp E_pair E_mol TotEng Press Volume 237s 0 0.1 -3.1333672 0 -3.0920969 -1.1437663 2444.9333 237s 1000 0.1 -3.0915072 0 -3.0502369 0.0099866805 2444.9333 237s 2000 0.1 -3.0826007 0 -3.0413304 -0.41998885 2444.9333 237s 3000 0.08982505 -3.0757908 0 -3.0387197 -0.25244271 2444.9333 237s 4000 0.098727892 -3.0666371 0 -3.0258918 -0.25382683 2444.9333 237s 5000 0.11345478 -3.0506905 0 -3.0038674 -0.029177812 2444.9333 237s 6000 0.11386723 -3.0515296 0 -3.0045363 -0.32135016 2444.9333 237s 7000 0.11555642 -3.0379879 0 -2.9902974 -0.40431662 2444.9333 237s 8000 0.10658321 -3.036405 0 -2.9924178 -0.4572299 2444.9333 237s 9000 0.11648934 -3.0271687 0 -2.9790932 -0.45898613 2444.9333 237s 10000 0.10677611 -3.0303232 0 -2.9862564 -0.35269781 2444.9333 237s 11000 0.11746006 -3.0346344 0 -2.9861583 -0.46341365 2444.9333 237s 12000 0.112074 -3.036913 0 -2.9906597 -0.21768573 2444.9333 237s 13000 0.11249017 -3.0395382 0 -2.9931132 -0.44391864 2444.9333 237s 14000 0.11381248 -3.0362108 0 -2.9892401 -0.30885868 2444.9333 237s 15000 0.10964575 -3.0436265 0 -2.9983754 -0.26625672 2444.9333 237s 16000 0.10798733 -3.0460787 0 -3.001512 -0.27971711 2444.9333 237s 17000 0.11191725 -3.0455618 0 -2.9993732 -0.36993854 2444.9333 237s 18000 0.11418143 -3.0485595 0 -3.0014364 -0.24776847 2444.9333 237s 19000 0.11028213 -3.0473558 0 -3.001842 -0.30249398 2444.9333 237s 20000 0.11512925 -3.0504969 0 -3.0029827 -0.36022205 2444.9333 237s Loop time of 4.22628 on 1 procs for 20000 steps with 1724 atoms 237s 237s Performance: 1022176.500 tau/day, 4732.299 timesteps/s, 8.158 Matom-step/s 237s 99.8% CPU use with 1 MPI tasks x 1 OpenMP threads 237s 237s MPI task timing breakdown: 237s Section | min time | avg time | max time |%varavg| %total 237s --------------------------------------------------------------- 237s Pair | 3.4543 | 3.4543 | 3.4543 | 0.0 | 81.73 237s Neigh | 0.21043 | 0.21043 | 0.21043 | 0.0 | 4.98 237s Comm | 0.028537 | 0.028537 | 0.028537 | 0.0 | 0.68 237s Output | 0.0006608 | 0.0006608 | 0.0006608 | 0.0 | 0.02 237s Modify | 0.43029 | 0.43029 | 0.43029 | 0.0 | 10.18 237s Other | | 0.1021 | | | 2.42 237s 237s Nlocal: 1724 ave 1724 max 1724 min 237s Histogram: 1 0 0 0 0 0 0 0 0 0 237s Nghost: 145 ave 145 max 145 min 237s Histogram: 1 0 0 0 0 0 0 0 0 0 237s Neighs: 14397 ave 14397 max 14397 min 237s Histogram: 1 0 0 0 0 0 0 0 0 0 237s 237s Total # of neighbors = 14397 237s Ave neighs/atom = 8.3509281 237s Neighbor list builds = 723 237s Dangerous builds = 0 237s Total wall time: 0:00:04 237s run: OK 238s autopkgtest [00:53:16]: test friction: -----------------------] 238s autopkgtest [00:53:16]: test friction: - - - - - - - - - - results - - - - - - - - - - 238s friction PASS 239s autopkgtest [00:53:17]: test hugo: preparing testbed 239s Reading package lists... 239s Building dependency tree... 239s Reading state information... 239s Solving dependencies... 240s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 240s autopkgtest [00:53:18]: test hugo: [----------------------- 241s LAMMPS (4 Feb 2025) 241s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 241s using 1 OpenMP thread(s) per MPI task 241s Lattice spacing in x,y,z = 1.4142135 2 2 241s Created orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 241s 1 by 1 by 2 MPI processor grid 241s Created 1000 atoms 241s using lattice units in orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 241s create_atoms CPU = 0.000 seconds 241s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 241s Neighbor list info ... 241s update: every = 1 steps, delay = 0 steps, check = yes 241s max neighbors/atom: 2000, page size: 100000 241s master list distance cutoff = 1.8475372 241s ghost atom cutoff = 1.8475372 241s binsize = 0.92376862, bins = 8 11 11 241s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 241s (1) pair lj/cubic, perpetual 241s attributes: half, newton on 241s pair build: half/bin/atomonly/newton 241s stencil: half/bin/3d 241s bin: standard 241s Setting up cg style minimization ... 241s Unit style : lj 241s Current step : 0 241s WARNING: Energy due to 3 extra global DOFs will be included in minimizer energies 241s (src/min.cpp:219) 241s Per MPI rank memory allocation (min/avg/max) = 4.237 | 4.237 | 4.237 Mbytes 241s Step Temp PotEng TotEng Pxx Pyy Pzz Lx Ly Lz 241s 0 0 -6.2937536 -6.2937536 -2.7722424 -2.7722424 -2.7722424 7.0710677 9.9999999 9.9999999 241s 100 0 -6.3319014 -6.3319014 -0.75971257 -0.75971257 -0.75971257 7.0003571 9.8999999 9.8999999 241s 134 0 -6.3344253 -6.3344253 -4.2957391e-13 -4.6556764e-13 -4.6545223e-13 6.9780267 9.8684199 9.8684199 241s Loop time of 0.0356802 on 2 procs for 134 steps with 1000 atoms 241s 241s 91.3% CPU use with 2 MPI tasks x 1 OpenMP threads 241s 241s Minimization stats: 241s Stopping criterion = force tolerance 241s Energy initial, next-to-last, final = 241s -6.29375358358574 -6.33442531515467 -6.33442531515467 241s Force two-norm initial, final = 3395.2895 5.526433e-10 241s Force max component initial, final = 1960.2713 3.2059964e-10 241s Final line search alpha, max atom move = 1 3.2059964e-10 241s Iterations, force evaluations = 134 137 241s 241s MPI task timing breakdown: 241s Section | min time | avg time | max time |%varavg| %total 241s --------------------------------------------------------------- 241s Pair | 0.020079 | 0.021904 | 0.023729 | 1.2 | 61.39 241s Neigh | 0.00038576 | 0.00041999 | 0.00045421 | 0.0 | 1.18 241s Comm | 0.0046568 | 0.0064679 | 0.008279 | 2.3 | 18.13 241s Output | 2.02e-05 | 4.836e-05 | 7.6521e-05 | 0.0 | 0.14 241s Modify | 0 | 0 | 0 | 0.0 | 0.00 241s Other | | 0.00684 | | | 19.17 241s 241s Nlocal: 500 ave 550 max 450 min 241s Histogram: 1 0 0 0 0 0 0 0 0 1 241s Nghost: 1214 ave 1264 max 1164 min 241s Histogram: 1 0 0 0 0 0 0 0 0 1 241s Neighs: 10500 ave 11550 max 9450 min 241s Histogram: 1 0 0 0 0 0 0 0 0 1 241s 241s Total # of neighbors = 21000 241s Ave neighs/atom = 21 241s Neighbor list builds = 1 241s Dangerous builds = 0 241s System init for write_restart ... 241s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 241s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 241s using 1 OpenMP thread(s) per MPI task 241s Reading restart file ... 241s restart file = 4 Feb 2025, LAMMPS = 4 Feb 2025 241s restoring atom style atomic from restart 241s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 241s 1 by 1 by 2 MPI processor grid 241s restoring pair style lj/cubic from restart 241s 1000 atoms 241s read_restart CPU = 0.001 seconds 241s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 241s Neighbor list info ... 241s update: every = 1 steps, delay = 0 steps, check = yes 241s max neighbors/atom: 2000, page size: 100000 241s master list distance cutoff = 1.7475372 241s ghost atom cutoff = 1.7475372 241s binsize = 0.87376862, bins = 8 12 12 241s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 241s (1) pair lj/cubic, perpetual 241s attributes: half, newton on 241s pair build: half/bin/atomonly/newton 241s stencil: half/bin/3d 241s bin: standard 241s Setting up Verlet run ... 241s Unit style : lj 241s Current step : 0 241s Time step : 0.001 241s Per MPI rank memory allocation (min/avg/max) = 3.112 | 3.112 | 3.112 Mbytes 241s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 241s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014355329 -0.00025901829 9.8684199 0 -0.0048552721 2.3792932 0.0041071767 241s 1000 0.010266754 0.015384732 -2.1717334 -4183.9192 129.07798 58.489025 8.3141524 -4.1817628 0.9362044 23.511491 3.7372332 241s 2000 0.40259797 0.60329306 -5.627962 -1085.8312 12.843116 1.8560907 9.4470663 -1.0808065 -0.37219276 14.040385 0.6226867 242s 3000 0.47352764 0.70958118 -3.847268 -3270.82 65.659321 23.910002 8.6682025 -3.2676824 -0.14827512 19.052005 2.3460318 242s 4000 0.51027892 0.76465296 -4.3666607 -2668.4808 36.299422 5.4253511 8.7365217 -2.6648788 -0.43242827 14.580921 1.6947004 242s 5000 0.27107084 0.40619965 -4.8148544 -1808.6901 35.499158 7.8616668 8.7438741 -1.8042815 -0.17683868 14.465657 1.6705446 243s 6000 0.14589565 0.21862463 -4.1603429 -2363.5903 43.618418 5.9789884 8.3935297 -2.3596486 -0.050591412 14.026367 2.1169125 243s 7000 0.085822195 0.12860456 -4.2874019 -2281.4454 40.483746 3.874914 8.3489633 -2.2772866 -0.011160894 13.315551 2.0696635 243s 8000 0.039594243 0.059331974 -4.3555951 -2176.8532 39.840893 3.7201608 8.3381853 -2.1725569 0.028292259 13.163321 2.0603537 244s 9000 0.025376486 0.038026664 -4.2983996 -2330.0794 39.628092 2.631482 8.2935294 -2.3258191 0.032864503 12.942681 2.084285 244s 10000 0.020305022 0.030427075 -4.2090968 -1864.3718 42.005843 3.1326248 8.2404246 -1.8601931 0.074717463 13.108473 2.1814026 244s Loop time of 3.12195 on 2 procs for 10000 steps with 1000 atoms 244s 244s Performance: 276750.228 tau/day, 3203.128 timesteps/s, 3.203 Matom-step/s 244s 94.1% CPU use with 2 MPI tasks x 1 OpenMP threads 244s 244s MPI task timing breakdown: 244s Section | min time | avg time | max time |%varavg| %total 244s --------------------------------------------------------------- 244s Pair | 2.0785 | 2.1007 | 2.1229 | 1.5 | 67.29 244s Neigh | 0.089017 | 0.092239 | 0.09546 | 1.1 | 2.95 244s Comm | 0.42687 | 0.45088 | 0.4749 | 3.6 | 14.44 244s Output | 0.00056225 | 0.00080301 | 0.0010438 | 0.0 | 0.03 244s Modify | 0.42449 | 0.42524 | 0.42598 | 0.1 | 13.62 244s Other | | 0.05212 | | | 1.67 244s 244s Nlocal: 500 ave 509 max 491 min 244s Histogram: 1 0 0 0 0 0 0 0 0 1 244s Nghost: 1346.5 ave 1369 max 1324 min 244s Histogram: 1 0 0 0 0 0 0 0 0 1 244s Neighs: 10311.5 ave 10391 max 10232 min 244s Histogram: 1 0 0 0 0 0 0 0 0 1 244s 244s Total # of neighbors = 20623 244s Ave neighs/atom = 20.623 244s Neighbor list builds = 205 244s Dangerous builds = 0 244s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 244s using 1 OpenMP thread(s) per MPI task 244s Reading restart file ... 244s restart file = 4 Feb 2025, LAMMPS = 4 Feb 2025 244s restoring atom style atomic from restart 244s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 244s 1 by 1 by 2 MPI processor grid 244s restoring pair style lj/cubic from restart 244s 1000 atoms 244s read_restart CPU = 0.000 seconds 244s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 244s Neighbor list info ... 244s update: every = 1 steps, delay = 0 steps, check = yes 244s max neighbors/atom: 2000, page size: 100000 244s master list distance cutoff = 1.7475372 244s ghost atom cutoff = 1.7475372 244s binsize = 0.87376862, bins = 8 12 12 244s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 244s (1) pair lj/cubic, perpetual 244s attributes: half, newton on 244s pair build: half/bin/atomonly/newton 244s stencil: half/bin/3d 244s bin: standard 244s Setting up Verlet run ... 244s Unit style : lj 244s Current step : 0 244s Time step : 0.001 244s Per MPI rank memory allocation (min/avg/max) = 3.112 | 3.112 | 3.112 Mbytes 244s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 244s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014355329 -0.00025901829 9.8684199 0 -0.0048552721 2.3792932 0.0041071767 244s 1000 0.0062790167 0.0094091065 -5.989181 -1670.9917 18.916499 7.5833446 9.2337867 -1.6650119 0.023434204 13.976079 0.92136905 244s 2000 0.0066373266 0.0099460339 -5.4562974 -2537.9609 37.066673 15.536927 8.9495838 -2.5325146 0.10236546 16.325445 1.5455989 245s 3000 0.006890427 0.010325305 -5.3657707 -2643.943 39.911802 16.807453 8.9154493 -2.6385876 0.11827588 16.639682 1.6328058 245s 4000 0.0073314031 0.010986107 -5.3630545 -2655.872 40.003435 16.849611 8.9144058 -2.6505199 0.11864983 16.649819 1.6355581 245s 5000 0.0075004567 0.011239434 -5.3630119 -2664.6029 39.9983 16.845885 8.9144863 -2.6592512 0.11845678 16.649441 1.6353853 245s 6000 0.0078159402 0.011712186 -5.3629866 -2673.5606 39.999501 16.84634 8.9144972 -2.6682093 0.11829898 16.649784 1.6354006 246s 7000 0.0078365866 0.011743125 -5.3625076 -2682.4138 40.001112 16.844623 8.9145083 -2.6770631 0.11814173 16.650214 1.6354243 246s 8000 0.0075482436 0.011311043 -5.3616205 -2690.9824 39.996485 16.835974 8.9145436 -2.6856321 0.11792207 16.649554 1.6352999 246s 9000 0.0083133885 0.012457613 -5.362258 -2700.1342 39.99904 16.841287 8.9145642 -2.6947844 0.11777124 16.650263 1.6353348 247s 10000 0.0086355586 0.012940385 -5.3622381 -2709.0315 39.997759 16.839976 8.9145913 -2.7036822 0.11757678 16.650228 1.6352858 247s Loop time of 2.64543 on 2 procs for 10000 steps with 1000 atoms 247s 247s Performance: 326601.574 tau/day, 3780.111 timesteps/s, 3.780 Matom-step/s 247s 93.8% CPU use with 2 MPI tasks x 1 OpenMP threads 247s 247s MPI task timing breakdown: 247s Section | min time | avg time | max time |%varavg| %total 247s --------------------------------------------------------------- 247s Pair | 1.8229 | 1.8328 | 1.8427 | 0.7 | 69.28 247s Neigh | 0.004403 | 0.0044091 | 0.0044152 | 0.0 | 0.17 247s Comm | 0.34348 | 0.35386 | 0.36424 | 1.7 | 13.38 247s Output | 0.00053229 | 0.0015587 | 0.0025852 | 2.6 | 0.06 247s Modify | 0.40352 | 0.40631 | 0.40911 | 0.4 | 15.36 247s Other | | 0.04647 | | | 1.76 247s 247s Nlocal: 500 ave 508 max 492 min 247s Histogram: 1 0 0 0 0 0 0 0 0 1 247s Nghost: 1214 ave 1222 max 1206 min 247s Histogram: 1 0 0 0 0 0 0 0 0 1 247s Neighs: 10500 ave 10668 max 10332 min 247s Histogram: 1 0 0 0 0 0 0 0 0 1 247s 247s Total # of neighbors = 21000 247s Ave neighs/atom = 21 247s Neighbor list builds = 10 247s Dangerous builds = 0 247s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 247s using 1 OpenMP thread(s) per MPI task 247s Reading restart file ... 247s restart file = 4 Feb 2025, LAMMPS = 4 Feb 2025 247s restoring atom style atomic from restart 247s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 247s 1 by 1 by 2 MPI processor grid 247s restoring pair style lj/cubic from restart 247s 1000 atoms 247s read_restart CPU = 0.001 seconds 247s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 247s Neighbor list info ... 247s update: every = 1 steps, delay = 0 steps, check = yes 247s max neighbors/atom: 2000, page size: 100000 247s master list distance cutoff = 1.7475372 247s ghost atom cutoff = 1.7475372 247s binsize = 0.87376862, bins = 8 12 12 247s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 247s (1) pair lj/cubic, perpetual 247s attributes: half, newton on 247s pair build: half/bin/atomonly/newton 247s stencil: half/bin/3d 247s bin: standard 247s Setting up Verlet run ... 247s Unit style : lj 247s Current step : 0 247s Time step : 0.001 247s Per MPI rank memory allocation (min/avg/max) = 3.112 | 3.112 | 3.112 Mbytes 247s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 247s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014355329 -0.00025901829 9.8684199 0 -0.0048552721 2.3792932 0.0041071767 247s 1000 0.0079519127 0.011915941 -5.50188 -838.80672 35.61641 14.888864 8.9677618 -0.83331675 0.093886135 16.160598 1.5002751 247s 2000 0.019411054 0.029087464 -5.2936665 -1019.5497 41.77353 17.564044 8.8958463 -1.0142851 0.11811209 16.853902 1.687248 247s 3000 0.047492482 0.071167484 -5.3441861 -971.66654 39.02349 16.097707 8.9321705 -0.96639352 0.073376741 16.597136 1.600557 248s 4000 0.12096417 0.18126481 -5.2102393 -1315.5664 40.846153 16.436163 8.9200987 -1.3105374 0.017574117 16.873813 1.6478442 248s 5000 0.1272463 0.19067858 -5.2517864 -1192.2753 39.105833 15.560562 8.9406854 -1.1872142 -0.00025457398 16.689339 1.5950732 248s 6000 0.14515651 0.21751704 -5.1820215 -1372.0064 40.682715 16.119979 8.9220924 -1.3670419 -0.0066818447 16.857436 1.6428451 249s 7000 0.12286771 0.18411727 -5.2596973 -1200.0518 39.255412 15.703071 8.938111 -1.1949762 0.0073588891 16.698492 1.6002966 249s 8000 0.1428801 0.21410583 -5.1748689 -1340.8702 40.704199 16.116121 8.9238602 -1.3359094 -0.0085191302 16.877378 1.6417704 249s 9000 0.12012635 0.18000933 -5.2541332 -1187.2981 39.322347 15.708304 8.9368444 -1.182224 0.0081737382 16.701561 1.6027307 249s 10000 0.1485814 0.22264922 -5.184468 -1359.9408 40.542555 16.055637 8.9246711 -1.3549789 -0.010330357 16.85094 1.6378163 249s Loop time of 2.76004 on 2 procs for 10000 steps with 1000 atoms 249s 249s Performance: 313038.547 tau/day, 3623.131 timesteps/s, 3.623 Matom-step/s 249s 93.2% CPU use with 2 MPI tasks x 1 OpenMP threads 249s 249s MPI task timing breakdown: 249s Section | min time | avg time | max time |%varavg| %total 249s --------------------------------------------------------------- 249s Pair | 1.8674 | 1.869 | 1.8705 | 0.1 | 67.72 249s Neigh | 0.043239 | 0.043386 | 0.043533 | 0.1 | 1.57 249s Comm | 0.36915 | 0.37056 | 0.37197 | 0.2 | 13.43 249s Output | 0.00055737 | 0.0022473 | 0.0039373 | 3.6 | 0.08 249s Modify | 0.41725 | 0.42288 | 0.42852 | 0.9 | 15.32 249s Other | | 0.05199 | | | 1.88 249s 249s Nlocal: 500 ave 510 max 490 min 249s Histogram: 1 0 0 0 0 0 0 0 0 1 249s Nghost: 1216.5 ave 1227 max 1206 min 249s Histogram: 1 0 0 0 0 0 0 0 0 1 249s Neighs: 10311 ave 10520 max 10102 min 249s Histogram: 1 0 0 0 0 0 0 0 0 1 249s 249s Total # of neighbors = 20622 249s Ave neighs/atom = 20.622 249s Neighbor list builds = 95 249s Dangerous builds = 0 249s Total wall time: 0:00:08 249s LAMMPS (4 Feb 2025) 250s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 250s using 1 OpenMP thread(s) per MPI task 250s Lattice spacing in x,y,z = 1.4142135 2 2 250s Created orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 250s 1 by 1 by 1 MPI processor grid 250s Created 1000 atoms 250s using lattice units in orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 250s create_atoms CPU = 0.000 seconds 250s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 250s Neighbor list info ... 250s update: every = 1 steps, delay = 0 steps, check = yes 250s max neighbors/atom: 2000, page size: 100000 250s master list distance cutoff = 1.8475372 250s ghost atom cutoff = 1.8475372 250s binsize = 0.92376862, bins = 8 11 11 250s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 250s (1) pair lj/cubic, perpetual 250s attributes: half, newton on 250s pair build: half/bin/atomonly/newton 250s stencil: half/bin/3d 250s bin: standard 250s Setting up cg style minimization ... 250s Unit style : lj 250s Current step : 0 250s WARNING: Energy due to 3 extra global DOFs will be included in minimizer energies 250s (src/min.cpp:219) 250s Per MPI rank memory allocation (min/avg/max) = 4.247 | 4.247 | 4.247 Mbytes 250s Step Temp PotEng TotEng Pxx Pyy Pzz Lx Ly Lz 250s 0 0 -6.2937536 -6.2937536 -2.7722424 -2.7722424 -2.7722424 7.0710677 9.9999999 9.9999999 250s 100 0 -6.3319014 -6.3319014 -0.75971257 -0.75971257 -0.75971257 7.0003571 9.8999999 9.8999999 250s 134 0 -6.3344253 -6.3344253 -4.3566216e-13 -4.7438184e-13 -4.6860149e-13 6.9780267 9.8684199 9.8684199 250s Loop time of 0.0545298 on 1 procs for 134 steps with 1000 atoms 250s 250s 98.3% CPU use with 1 MPI tasks x 1 OpenMP threads 250s 250s Minimization stats: 250s Stopping criterion = force tolerance 250s Energy initial, next-to-last, final = 250s -6.29375358358556 -6.33442531515503 -6.33442531515503 250s Force two-norm initial, final = 3395.2895 5.6047601e-10 250s Force max component initial, final = 1960.2713 3.2666928e-10 250s Final line search alpha, max atom move = 1 3.2666928e-10 250s Iterations, force evaluations = 134 137 250s 250s MPI task timing breakdown: 250s Section | min time | avg time | max time |%varavg| %total 250s --------------------------------------------------------------- 250s Pair | 0.043587 | 0.043587 | 0.043587 | 0.0 | 79.93 250s Neigh | 0.00083157 | 0.00083157 | 0.00083157 | 0.0 | 1.52 250s Comm | 0.0012135 | 0.0012135 | 0.0012135 | 0.0 | 2.23 250s Output | 2.384e-05 | 2.384e-05 | 2.384e-05 | 0.0 | 0.04 250s Modify | 0 | 0 | 0 | 0.0 | 0.00 250s Other | | 0.008873 | | | 16.27 250s 250s Nlocal: 1000 ave 1000 max 1000 min 250s Histogram: 1 0 0 0 0 0 0 0 0 0 250s Nghost: 1724 ave 1724 max 1724 min 250s Histogram: 1 0 0 0 0 0 0 0 0 0 250s Neighs: 21000 ave 21000 max 21000 min 250s Histogram: 1 0 0 0 0 0 0 0 0 0 250s 250s Total # of neighbors = 21000 250s Ave neighs/atom = 21 250s Neighbor list builds = 1 250s Dangerous builds = 0 250s System init for write_restart ... 250s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 250s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 250s using 1 OpenMP thread(s) per MPI task 250s Reading restart file ... 250s restart file = 4 Feb 2025, LAMMPS = 4 Feb 2025 250s restoring atom style atomic from restart 250s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 250s 1 by 1 by 1 MPI processor grid 250s restoring pair style lj/cubic from restart 250s 1000 atoms 250s read_restart CPU = 0.000 seconds 250s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 250s Neighbor list info ... 250s update: every = 1 steps, delay = 0 steps, check = yes 250s max neighbors/atom: 2000, page size: 100000 250s master list distance cutoff = 1.7475372 250s ghost atom cutoff = 1.7475372 250s binsize = 0.87376862, bins = 8 12 12 250s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 255s (1) pair lj/cubic, perpetual 255s attributes: half, newton on 255s pair build: half/bin/atomonly/newton 255s stencil: half/bin/3d 255s bin: standard 255s Setting up Verlet run ... 255s Unit style : lj 255s Current step : 0 255s Time step : 0.001 255s Per MPI rank memory allocation (min/avg/max) = 3.124 | 3.124 | 3.124 Mbytes 255s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 255s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014381062 -0.00023971829 9.8684199 0 -0.004855267 2.3814248 0.0041108563 255s 1000 0.0093381492 0.013993217 -2.1704431 -4183.8284 129.15284 58.544409 8.3142517 -4.1816719 0.93744212 23.519052 3.7381985 255s 2000 0.24794859 0.37155095 -5.8915826 -528.38691 8.3849811 1.3744297 9.5938806 -0.52286688 -0.24350394 13.910493 0.41033425 255s 3000 0.3892042 0.5832225 -3.7686896 -3442.3257 72.742382 28.486576 8.6238082 -3.4391402 0.0038227739 19.697354 2.5139569 255s 4000 0.67010303 1.0041494 -4.2080956 -2935.8105 35.596234 3.9346859 8.7508489 -2.9326065 -0.58038927 14.529876 1.6677093 255s 5000 0.41845028 0.62704774 -4.8392822 -1894.6664 30.624319 4.6370699 8.7827304 -1.8904542 -0.31998377 13.670423 1.5249748 255s 6000 0.22409652 0.33580864 -3.7653422 -2666.4156 50.804071 7.220865 8.25496 -2.6629861 -0.017448126 14.48017 2.3883779 255s 7000 0.094832865 0.14210705 -4.5432169 -2337.0271 35.853414 3.4750842 8.4475655 -2.332626 -0.052659777 12.95347 1.8841809 255s 8000 0.043338745 0.06494311 -4.6249402 -1687.4892 39.679004 6.7256868 8.4321684 -1.6829292 0.070571417 13.554654 1.9927395 255s 9000 0.018233343 0.027322664 -4.425909 -1916.4941 41.680023 5.9079935 8.3470382 -1.9120955 0.090887676 13.502397 2.1013348 255s 10000 0.0082616415 0.01238007 -4.6221264 -1723.6542 39.842157 6.5678795 8.41093 -1.7190444 0.099616538 13.484322 2.0113699 255s Loop time of 5.0295 on 1 procs for 10000 steps with 1000 atoms 255s 255s Performance: 171786.296 tau/day, 1988.267 timesteps/s, 1.988 Matom-step/s 255s 99.4% CPU use with 1 MPI tasks x 1 OpenMP threads 255s 255s MPI task timing breakdown: 255s Section | min time | avg time | max time |%varavg| %total 255s --------------------------------------------------------------- 255s Pair | 4.128 | 4.128 | 4.128 | 0.0 | 82.08 255s Neigh | 0.16366 | 0.16366 | 0.16366 | 0.0 | 3.25 255s Comm | 0.094593 | 0.094593 | 0.094593 | 0.0 | 1.88 255s Output | 0.00060961 | 0.00060961 | 0.00060961 | 0.0 | 0.01 255s Modify | 0.60141 | 0.60141 | 0.60141 | 0.0 | 11.96 255s Other | | 0.0412 | | | 0.82 255s 255s Nlocal: 1000 ave 1000 max 1000 min 255s Histogram: 1 0 0 0 0 0 0 0 0 0 255s Nghost: 1886 ave 1886 max 1886 min 255s Histogram: 1 0 0 0 0 0 0 0 0 0 255s Neighs: 20874 ave 20874 max 20874 min 255s Histogram: 1 0 0 0 0 0 0 0 0 0 255s 255s Total # of neighbors = 20874 255s Ave neighs/atom = 20.874 255s Neighbor list builds = 188 255s Dangerous builds = 0 255s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 255s using 1 OpenMP thread(s) per MPI task 255s Reading restart file ... 255s restart file = 4 Feb 2025, LAMMPS = 4 Feb 2025 255s restoring atom style atomic from restart 255s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 255s 1 by 1 by 1 MPI processor grid 255s restoring pair style lj/cubic from restart 255s 1000 atoms 255s read_restart CPU = 0.001 seconds 255s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 255s Neighbor list info ... 259s update: every = 1 steps, delay = 0 steps, check = yes 259s max neighbors/atom: 2000, page size: 100000 259s master list distance cutoff = 1.7475372 259s ghost atom cutoff = 1.7475372 259s binsize = 0.87376862, bins = 8 12 12 259s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 259s (1) pair lj/cubic, perpetual 259s attributes: half, newton on 259s pair build: half/bin/atomonly/newton 259s stencil: half/bin/3d 259s bin: standard 259s Setting up Verlet run ... 259s Unit style : lj 259s Current step : 0 259s Time step : 0.001 259s Per MPI rank memory allocation (min/avg/max) = 3.124 | 3.124 | 3.124 Mbytes 259s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 259s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014381062 -0.00023971829 9.8684199 0 -0.004855267 2.3814248 0.0041108563 259s 1000 0.0062572988 0.0093765623 -5.989087 -1670.9191 18.918118 7.5844401 9.2338165 -1.6649394 0.023419337 13.976997 0.92138738 259s 2000 0.0068451081 0.010257394 -5.456581 -2537.81 37.064253 15.537266 8.9496405 -2.5323637 0.10230605 16.325406 1.5455016 259s 3000 0.0073276099 0.010980423 -5.3663421 -2643.8751 39.907292 16.807489 8.9154852 -2.6385198 0.11818116 16.63905 1.6326832 259s 4000 0.0069296906 0.010384141 -5.36234 -2655.7228 40.010742 16.851482 8.9144328 -2.6503709 0.11868137 16.651571 1.6356847 259s 5000 0.0076142461 0.011409948 -5.3631443 -2664.4499 39.997648 16.846756 8.9145416 -2.6590982 0.1184114 16.649779 1.6353254 259s 6000 0.0077053831 0.011546517 -5.3628538 -2673.2444 39.991598 16.840314 8.9145803 -2.667893 0.11818361 16.648852 1.6351691 259s 7000 0.0077405663 0.011599239 -5.3623531 -2682.1589 40.000448 16.844009 8.9145774 -2.6768081 0.11809899 16.650669 1.6353525 259s 8000 0.0080673569 0.012088934 -5.3623755 -2691.0104 39.995327 16.840134 8.9146099 -2.6856601 0.11787103 16.649882 1.6352204 259s 9000 0.0083223083 0.012470979 -5.3622988 -2699.8929 40.00571 16.847764 8.9146503 -2.6945431 0.11781523 16.652389 1.6353987 259s 10000 0.0091249116 0.01367368 -5.3630138 -2708.966 39.987197 16.837314 8.9146848 -2.7036167 0.11743014 16.648832 1.6349911 259s Loop time of 4.37547 on 1 procs for 10000 steps with 1000 atoms 259s 259s Performance: 197464.388 tau/day, 2285.467 timesteps/s, 2.285 Matom-step/s 259s 99.0% CPU use with 1 MPI tasks x 1 OpenMP threads 259s 259s MPI task timing breakdown: 259s Section | min time | avg time | max time |%varavg| %total 259s --------------------------------------------------------------- 259s Pair | 3.644 | 3.644 | 3.644 | 0.0 | 83.28 259s Neigh | 0.0099626 | 0.0099626 | 0.0099626 | 0.0 | 0.23 259s Comm | 0.084613 | 0.084613 | 0.084613 | 0.0 | 1.93 259s Output | 0.00052373 | 0.00052373 | 0.00052373 | 0.0 | 0.01 259s Modify | 0.59709 | 0.59709 | 0.59709 | 0.0 | 13.65 259s Other | | 0.03925 | | | 0.90 259s 259s Nlocal: 1000 ave 1000 max 1000 min 259s Histogram: 1 0 0 0 0 0 0 0 0 0 259s Nghost: 1724 ave 1724 max 1724 min 259s Histogram: 1 0 0 0 0 0 0 0 0 0 259s Neighs: 21000 ave 21000 max 21000 min 259s Histogram: 1 0 0 0 0 0 0 0 0 0 259s 259s Total # of neighbors = 21000 259s Ave neighs/atom = 21 259s Neighbor list builds = 11 259s Dangerous builds = 0 259s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 259s using 1 OpenMP thread(s) per MPI task 259s Reading restart file ... 259s restart file = 4 Feb 2025, LAMMPS = 4 Feb 2025 259s restoring atom style atomic from restart 264s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 264s 1 by 1 by 1 MPI processor grid 264s restoring pair style lj/cubic from restart 264s 1000 atoms 264s read_restart CPU = 0.000 seconds 264s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 264s Neighbor list info ... 264s update: every = 1 steps, delay = 0 steps, check = yes 264s max neighbors/atom: 2000, page size: 100000 264s master list distance cutoff = 1.7475372 264s ghost atom cutoff = 1.7475372 264s binsize = 0.87376862, bins = 8 12 12 264s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 264s (1) pair lj/cubic, perpetual 264s attributes: half, newton on 264s pair build: half/bin/atomonly/newton 264s stencil: half/bin/3d 264s bin: standard 264s Setting up Verlet run ... 264s Unit style : lj 264s Current step : 0 264s Time step : 0.001 264s Per MPI rank memory allocation (min/avg/max) = 3.124 | 3.124 | 3.124 Mbytes 264s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 264s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014381062 -0.00023971829 9.8684199 0 -0.004855267 2.3814248 0.0041108563 264s 1000 0.0083300318 0.012482553 -5.5023183 -838.99233 35.610078 14.886668 8.9677982 -0.83350249 0.093761717 16.159482 1.500112 264s 2000 0.020386436 0.030549075 -5.294934 -1021.4347 41.760404 17.563313 8.8960328 -1.0161703 0.1178086 16.852842 1.6868239 264s 3000 0.049693082 0.074465084 -5.3469418 -982.1922 39.030412 16.123502 8.9325589 -0.97691972 0.073097533 16.601991 1.6003728 264s 4000 0.11859524 0.17771497 -5.207074 -1299.948 40.941639 16.507821 8.9213137 -1.2949186 0.018189971 16.904165 1.6487306 264s 5000 0.130146 0.19502378 -5.261025 -1208.3405 39.059595 15.609328 8.9431689 -1.2032745 -0.00023811036 16.701434 1.5920334 264s 6000 0.13812959 0.20698719 -5.1710048 -1334.1421 40.904888 16.242199 8.9222846 -1.329178 -0.0044756362 16.90509 1.6471606 264s 7000 0.12107441 0.18143001 -5.2602562 -1170.0585 39.060849 15.577606 8.9397535 -1.1649797 0.005587398 16.671517 1.5949415 264s 8000 0.14333426 0.21478639 -5.1717109 -1352.635 40.876285 16.205871 8.9218128 -1.3476781 -0.0069373292 16.895041 1.6469877 264s 9000 0.12159783 0.18221435 -5.2591928 -1186.8604 39.22852 15.6778 8.9376658 -1.1817834 0.0077335044 16.68885 1.6001243 264s 10000 0.15321647 0.22959488 -5.188176 -1391.2245 40.666599 16.146259 8.9228489 -1.3862659 -0.0091900905 16.860718 1.6418747 264s Loop time of 4.54683 on 1 procs for 10000 steps with 1000 atoms 264s 264s Performance: 190022.323 tau/day, 2199.332 timesteps/s, 2.199 Matom-step/s 264s 99.2% CPU use with 1 MPI tasks x 1 OpenMP threads 264s 264s MPI task timing breakdown: 264s Section | min time | avg time | max time |%varavg| %total 264s --------------------------------------------------------------- 264s Pair | 3.7313 | 3.7313 | 3.7313 | 0.0 | 82.06 264s Neigh | 0.084796 | 0.084796 | 0.084796 | 0.0 | 1.86 264s Comm | 0.087779 | 0.087779 | 0.087779 | 0.0 | 1.93 264s Output | 0.00052969 | 0.00052969 | 0.00052969 | 0.0 | 0.01 264s Modify | 0.60206 | 0.60206 | 0.60206 | 0.0 | 13.24 264s Other | | 0.04034 | | | 0.89 264s 264s Nlocal: 1000 ave 1000 max 1000 min 264s Histogram: 1 0 0 0 0 0 0 0 0 0 264s Nghost: 1724 ave 1724 max 1724 min 264s Histogram: 1 0 0 0 0 0 0 0 0 0 264s Neighs: 20654 ave 20654 max 20654 min 264s Histogram: 1 0 0 0 0 0 0 0 0 0 264s 264s Total # of neighbors = 20654 264s Ave neighs/atom = 20.654 264s Neighbor list builds = 94 264s Dangerous builds = 0 264s Total wall time: 0:00:14 264s run: OK 264s autopkgtest [00:53:42]: test hugo: -----------------------] 264s hugo PASS 264s autopkgtest [00:53:42]: test hugo: - - - - - - - - - - results - - - - - - - - - - 265s autopkgtest [00:53:43]: test command1: preparing testbed 273s Creating nova instance adt-resolute-arm64-lammps-20251020-004918-juju-7f2275-prod-proposed-migration-environment-15-2a3ed8d6-b5da-4ec2-92cf-5c3be45394d7 from image adt/ubuntu-resolute-arm64-server-20251019.img (UUID 66624775-bb7d-402f-bbba-489c1d649d18)... 357s autopkgtest [00:55:15]: testbed dpkg architecture: arm64 357s autopkgtest [00:55:15]: testbed apt version: 3.1.8ubuntu1 357s autopkgtest [00:55:15]: @@@@@@@@@@@@@@@@@@@@ test bed setup 357s autopkgtest [00:55:15]: testbed release detected to be: resolute 358s autopkgtest [00:55:16]: updating testbed package index (apt update) 359s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [83.3 kB] 359s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 360s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 360s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 360s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [396 kB] 360s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [5028 B] 360s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [15.8 kB] 360s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [47.8 kB] 361s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 Packages [110 kB] 361s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 Packages [43.8 kB] 361s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 Packages [274 kB] 361s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 Packages [8020 B] 361s Fetched 984 kB in 2s (426 kB/s) 362s Reading package lists... 362s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 363s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 363s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 363s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 363s Reading package lists... 363s Reading package lists... 364s Building dependency tree... 364s Reading state information... 364s Calculating upgrade... 364s The following packages will be upgraded: 364s distro-info-data dpkg dpkg-dev libaudit-common libaudit1 libdpkg-perl 364s libp11-kit0 libseccomp2 python-apt-common python3-apt 365s 10 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 365s Need to get 3273 kB of archives. 365s After this operation, 503 kB of additional disk space will be used. 365s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 dpkg arm64 1.22.21ubuntu4 [1274 kB] 366s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 libaudit-common all 1:4.0.5-1build2 [6596 B] 366s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 libaudit1 arm64 1:4.0.5-1build2 [58.6 kB] 366s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 distro-info-data all 0.68 [7378 B] 366s Get:5 http://ftpmaster.internal/ubuntu resolute/main arm64 libp11-kit0 arm64 0.25.9-2 [283 kB] 366s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 libseccomp2 arm64 2.6.0-2ubuntu3 [56.1 kB] 366s Get:7 http://ftpmaster.internal/ubuntu resolute/main arm64 python-apt-common all 3.0.0ubuntu2 [21.7 kB] 366s Get:8 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-apt arm64 3.0.0ubuntu2 [197 kB] 366s Get:9 http://ftpmaster.internal/ubuntu resolute/main arm64 dpkg-dev all 1.22.21ubuntu4 [1088 kB] 367s Get:10 http://ftpmaster.internal/ubuntu resolute/main arm64 libdpkg-perl all 1.22.21ubuntu4 [280 kB] 368s dpkg-preconfigure: unable to re-open stdin: No such file or directory 368s Fetched 3273 kB in 3s (1167 kB/s) 368s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83359 files and directories currently installed.) 368s Preparing to unpack .../dpkg_1.22.21ubuntu4_arm64.deb ... 368s Unpacking dpkg (1.22.21ubuntu4) over (1.22.21ubuntu3) ... 368s Setting up dpkg (1.22.21ubuntu4) ... 369s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83359 files and directories currently installed.) 369s Preparing to unpack .../libaudit-common_1%3a4.0.5-1build2_all.deb ... 369s Unpacking libaudit-common (1:4.0.5-1build2) over (1:4.0.5-1build1) ... 369s Setting up libaudit-common (1:4.0.5-1build2) ... 369s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83359 files and directories currently installed.) 369s Preparing to unpack .../libaudit1_1%3a4.0.5-1build2_arm64.deb ... 369s Unpacking libaudit1:arm64 (1:4.0.5-1build2) over (1:4.0.5-1build1) ... 369s Setting up libaudit1:arm64 (1:4.0.5-1build2) ... 369s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83359 files and directories currently installed.) 369s Preparing to unpack .../0-distro-info-data_0.68_all.deb ... 369s Unpacking distro-info-data (0.68) over (0.67~ubuntu1) ... 369s Preparing to unpack .../1-libp11-kit0_0.25.9-2_arm64.deb ... 369s Unpacking libp11-kit0:arm64 (0.25.9-2) over (0.25.5-3ubuntu1) ... 369s Preparing to unpack .../2-libseccomp2_2.6.0-2ubuntu3_arm64.deb ... 369s Unpacking libseccomp2:arm64 (2.6.0-2ubuntu3) over (2.6.0-2ubuntu2) ... 369s Preparing to unpack .../3-python-apt-common_3.0.0ubuntu2_all.deb ... 369s Unpacking python-apt-common (3.0.0ubuntu2) over (3.0.0ubuntu1) ... 369s Preparing to unpack .../4-python3-apt_3.0.0ubuntu2_arm64.deb ... 369s Unpacking python3-apt (3.0.0ubuntu2) over (3.0.0ubuntu1) ... 369s Preparing to unpack .../5-dpkg-dev_1.22.21ubuntu4_all.deb ... 369s Unpacking dpkg-dev (1.22.21ubuntu4) over (1.22.21ubuntu3) ... 369s Preparing to unpack .../6-libdpkg-perl_1.22.21ubuntu4_all.deb ... 369s Unpacking libdpkg-perl (1.22.21ubuntu4) over (1.22.21ubuntu3) ... 370s Setting up distro-info-data (0.68) ... 370s Setting up libseccomp2:arm64 (2.6.0-2ubuntu3) ... 370s Setting up libp11-kit0:arm64 (0.25.9-2) ... 370s Setting up libdpkg-perl (1.22.21ubuntu4) ... 370s Setting up python-apt-common (3.0.0ubuntu2) ... 370s Setting up python3-apt (3.0.0ubuntu2) ... 370s Setting up dpkg-dev (1.22.21ubuntu4) ... 370s Processing triggers for man-db (2.13.1-1) ... 372s Processing triggers for libc-bin (2.42-0ubuntu3) ... 372s autopkgtest [00:55:30]: upgrading testbed (apt dist-upgrade and autopurge) 372s Reading package lists... 372s Building dependency tree... 372s Reading state information... 372s Calculating upgrade... 373s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 373s Reading package lists... 373s Building dependency tree... 373s Reading state information... 373s Solving dependencies... 374s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 374s autopkgtest [00:55:32]: rebooting testbed after setup commands that affected boot 403s Reading package lists... 403s Building dependency tree... 403s Reading state information... 403s Solving dependencies... 404s The following NEW packages will be installed: 404s autoconf automake autotools-dev cpp-15 cpp-15-aarch64-linux-gnu 404s fontconfig-config fonts-dejavu-core fonts-dejavu-mono gcc-15 404s gcc-15-aarch64-linux-gnu gfortran-15 gfortran-15-aarch64-linux-gnu libaec0 404s libamd-comgr2 libamdhip64-5 libasan8 libblas3 libcairo2 libcc1-0 libdeflate0 404s libdouble-conversion3 libdrm-amdgpu1 libevent-2.1-7t64 404s libevent-core-2.1-7t64 libevent-dev libevent-extra-2.1-7t64 404s libevent-openssl-2.1-7t64 libevent-pthreads-2.1-7t64 libfabric1 404s libfftw3-double3 libfontconfig1 libgbm1 libgcc-15-dev libgfortran-15-dev 404s libgfortran5 libgl1 libgl1-mesa-dri libgl2ps1.4 libglew2.2 libglvnd0 404s libglx-mesa0 libglx0 libgomp1 libhdf5-310 libhdf5-hl-310 libhsa-runtime64-1 404s libhsakmt1 libhwasan0 libhwloc-dev libhwloc-plugins libhwloc15 libibmad5 404s libibumad3 libibverbs-dev libisl23 libitm1 libjbig0 libjpeg-turbo8 libjpeg8 404s libjs-jquery libjs-jquery-ui libjsoncpp26 libkim-api2 liblammps-dev 404s liblammps0t64 liblapack3 liblerc4 libllvm17t64 liblsan0 libltdl-dev libltdl7 404s libmpc3 libnetcdf22 libnl-3-dev libnl-route-3-dev libnuma-dev libogg0 404s libopengl0 libopenmpi-dev libopenmpi40 libpciaccess0 libpixman-1-0 404s libpnetcdf6 libproj25 librdmacm1t64 libsharpyuv0 libsz2 libtbb12 404s libtbbbind-2-5 libtbbmalloc2 libtcl8.6 libtheoradec1 libtheoraenc1 libtiff6 404s libtk8.6 libtsan2 libubsan1 libucx0 libvoro++1 libvtk9.3 libvulkan1 libwebp7 404s libx11-xcb1 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 404s libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxft2 libxnvctrl0 404s libxrender1 libxshmfence1 libxss1 libxxf86vm1 m4 mesa-libgallium 404s mpi-default-bin mpi-default-dev ocl-icd-libopencl1 openmpi-bin 404s openmpi-common proj-data python3-lammps x11-common zlib1g-dev 404s 0 upgraded, 128 newly installed, 0 to remove and 0 not upgraded. 404s Need to get 189 MB of archives. 404s After this operation, 768 MB of additional disk space will be used. 404s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 m4 arm64 1.4.19-8 [244 kB] 404s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 autoconf all 2.72-3.1ubuntu1 [384 kB] 405s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 autotools-dev all 20240727.1 [43.4 kB] 405s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 automake all 1:1.17-4ubuntu1 [572 kB] 405s Get:5 http://ftpmaster.internal/ubuntu resolute/main arm64 libisl23 arm64 0.27-1 [676 kB] 406s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 libmpc3 arm64 1.3.1-1build3 [58.9 kB] 406s Get:7 http://ftpmaster.internal/ubuntu resolute/main arm64 cpp-15-aarch64-linux-gnu arm64 15.2.0-5ubuntu1 [11.7 MB] 409s Get:8 http://ftpmaster.internal/ubuntu resolute/main arm64 cpp-15 arm64 15.2.0-5ubuntu1 [1028 B] 409s Get:9 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 409s Get:10 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 409s Get:11 http://ftpmaster.internal/ubuntu resolute/main arm64 fontconfig-config arm64 2.15.0-2.3ubuntu1 [38.1 kB] 409s Get:12 http://ftpmaster.internal/ubuntu resolute/main arm64 libcc1-0 arm64 15.2.0-5ubuntu1 [49.2 kB] 409s Get:13 http://ftpmaster.internal/ubuntu resolute/main arm64 libgomp1 arm64 15.2.0-5ubuntu1 [148 kB] 409s Get:14 http://ftpmaster.internal/ubuntu resolute/main arm64 libitm1 arm64 15.2.0-5ubuntu1 [28.1 kB] 409s Get:15 http://ftpmaster.internal/ubuntu resolute/main arm64 libasan8 arm64 15.2.0-5ubuntu1 [2922 kB] 409s Get:16 http://ftpmaster.internal/ubuntu resolute/main arm64 liblsan0 arm64 15.2.0-5ubuntu1 [1316 kB] 409s Get:17 http://ftpmaster.internal/ubuntu resolute/main arm64 libtsan2 arm64 15.2.0-5ubuntu1 [2689 kB] 409s Get:18 http://ftpmaster.internal/ubuntu resolute/main arm64 libubsan1 arm64 15.2.0-5ubuntu1 [1176 kB] 411s Get:19 http://ftpmaster.internal/ubuntu resolute/main arm64 libhwasan0 arm64 15.2.0-5ubuntu1 [1639 kB] 412s Get:20 http://ftpmaster.internal/ubuntu resolute/main arm64 libgcc-15-dev arm64 15.2.0-5ubuntu1 [2601 kB] 413s Get:21 http://ftpmaster.internal/ubuntu resolute/main arm64 gcc-15-aarch64-linux-gnu arm64 15.2.0-5ubuntu1 [23.1 MB] 420s Get:22 http://ftpmaster.internal/ubuntu resolute/main arm64 gcc-15 arm64 15.2.0-5ubuntu1 [512 kB] 420s Get:23 http://ftpmaster.internal/ubuntu resolute/main arm64 libgfortran5 arm64 15.2.0-5ubuntu1 [450 kB] 420s Get:24 http://ftpmaster.internal/ubuntu resolute/main arm64 libgfortran-15-dev arm64 15.2.0-5ubuntu1 [489 kB] 420s Get:25 http://ftpmaster.internal/ubuntu resolute/main arm64 gfortran-15-aarch64-linux-gnu arm64 15.2.0-5ubuntu1 [12.5 MB] 424s Get:26 http://ftpmaster.internal/ubuntu resolute/main arm64 gfortran-15 arm64 15.2.0-5ubuntu1 [17.7 kB] 424s Get:27 http://ftpmaster.internal/ubuntu resolute/universe arm64 libaec0 arm64 1.1.3-1 [22.0 kB] 424s Get:28 http://ftpmaster.internal/ubuntu resolute/universe arm64 libllvm17t64 arm64 1:17.0.6-22build1 [24.8 MB] 430s Get:29 http://ftpmaster.internal/ubuntu resolute/universe arm64 libamd-comgr2 arm64 6.0+git20231212.4510c28+dfsg-3build3 [14.0 MB] 434s Get:30 http://ftpmaster.internal/ubuntu resolute/main arm64 libdrm-amdgpu1 arm64 2.4.125-1 [21.6 kB] 434s Get:31 http://ftpmaster.internal/ubuntu resolute/universe arm64 libhsakmt1 arm64 6.2.4+ds-1 [64.7 kB] 434s Get:32 http://ftpmaster.internal/ubuntu resolute/universe arm64 libhsa-runtime64-1 arm64 6.1.2-3 [305 kB] 434s Get:33 http://ftpmaster.internal/ubuntu resolute/universe arm64 libamdhip64-5 arm64 5.7.1-6 [9707 kB] 437s Get:34 http://ftpmaster.internal/ubuntu resolute/main arm64 libblas3 arm64 3.12.1-6build1 [186 kB] 437s Get:35 http://ftpmaster.internal/ubuntu resolute/main arm64 libfontconfig1 arm64 2.15.0-2.3ubuntu1 [144 kB] 437s Get:36 http://ftpmaster.internal/ubuntu resolute/main arm64 libpixman-1-0 arm64 0.44.0-3 [197 kB] 437s Get:37 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-render0 arm64 1.17.0-2build1 [18.1 kB] 437s Get:38 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-shm0 arm64 1.17.0-2build1 [6234 B] 438s Get:39 http://ftpmaster.internal/ubuntu resolute/main arm64 libxrender1 arm64 1:0.9.12-1 [19.5 kB] 438s Get:40 http://ftpmaster.internal/ubuntu resolute/main arm64 libcairo2 arm64 1.18.4-1build1 [592 kB] 438s Get:41 http://ftpmaster.internal/ubuntu resolute/main arm64 libdeflate0 arm64 1.23-2 [46.4 kB] 438s Get:42 http://ftpmaster.internal/ubuntu resolute/universe arm64 libdouble-conversion3 arm64 3.3.1-1build1 [40.6 kB] 438s Get:43 http://ftpmaster.internal/ubuntu resolute/main arm64 libevent-2.1-7t64 arm64 2.1.12-stable-10build1 [152 kB] 438s Get:44 http://ftpmaster.internal/ubuntu resolute/main arm64 libevent-core-2.1-7t64 arm64 2.1.12-stable-10build1 [97.5 kB] 438s Get:45 http://ftpmaster.internal/ubuntu resolute/main arm64 libevent-extra-2.1-7t64 arm64 2.1.12-stable-10build1 [67.1 kB] 438s Get:46 http://ftpmaster.internal/ubuntu resolute/main arm64 libevent-pthreads-2.1-7t64 arm64 2.1.12-stable-10build1 [8272 B] 438s Get:47 http://ftpmaster.internal/ubuntu resolute/main arm64 libevent-openssl-2.1-7t64 arm64 2.1.12-stable-10build1 [15.9 kB] 439s Get:48 http://ftpmaster.internal/ubuntu resolute/main arm64 libevent-dev arm64 2.1.12-stable-10build1 [295 kB] 439s Get:49 http://ftpmaster.internal/ubuntu resolute/main arm64 librdmacm1t64 arm64 56.1-1ubuntu1 [71.4 kB] 439s Get:50 http://ftpmaster.internal/ubuntu resolute/universe arm64 libfabric1 arm64 2.1.0-1.1 [622 kB] 439s Get:51 http://ftpmaster.internal/ubuntu resolute/main arm64 libfftw3-double3 arm64 3.3.10-2fakesync1build2 [399 kB] 439s Get:52 http://ftpmaster.internal/ubuntu resolute/main arm64 libx11-xcb1 arm64 2:1.8.12-1build1 [8216 B] 439s Get:53 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-dri3-0 arm64 1.17.0-2build1 [8120 B] 439s Get:54 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-present0 arm64 1.17.0-2build1 [6560 B] 439s Get:55 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-randr0 arm64 1.17.0-2build1 [20.2 kB] 439s Get:56 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-sync1 arm64 1.17.0-2build1 [10.4 kB] 439s Get:57 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-xfixes0 arm64 1.17.0-2build1 [11.4 kB] 439s Get:58 http://ftpmaster.internal/ubuntu resolute/main arm64 libxshmfence1 arm64 1.3.3-1 [5378 B] 439s Get:59 http://ftpmaster.internal/ubuntu resolute/main arm64 mesa-libgallium arm64 25.2.3-1ubuntu1 [12.1 MB] 441s Get:60 http://ftpmaster.internal/ubuntu resolute/main arm64 libgbm1 arm64 25.2.3-1ubuntu1 [34.4 kB] 441s Get:61 http://ftpmaster.internal/ubuntu resolute/main arm64 libvulkan1 arm64 1.4.321.0-1 [169 kB] 441s Get:62 http://ftpmaster.internal/ubuntu resolute/main arm64 libgl1-mesa-dri arm64 25.2.3-1ubuntu1 [34.9 kB] 441s Get:63 http://ftpmaster.internal/ubuntu resolute/main arm64 libglvnd0 arm64 1.7.0-1build2 [59.2 kB] 441s Get:64 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-glx0 arm64 1.17.0-2build1 [27.8 kB] 441s Get:65 http://ftpmaster.internal/ubuntu resolute/main arm64 libxxf86vm1 arm64 1:1.1.4-1build4 [9130 B] 441s Get:66 http://ftpmaster.internal/ubuntu resolute/main arm64 libglx-mesa0 arm64 25.2.3-1ubuntu1 [110 kB] 441s Get:67 http://ftpmaster.internal/ubuntu resolute/main arm64 libglx0 arm64 1.7.0-1build2 [34.5 kB] 441s Get:68 http://ftpmaster.internal/ubuntu resolute/main arm64 libgl1 arm64 1.7.0-1build2 [104 kB] 442s Get:69 http://ftpmaster.internal/ubuntu resolute/universe arm64 libgl2ps1.4 arm64 1.4.2+dfsg1-2build1 [40.6 kB] 442s Get:70 http://ftpmaster.internal/ubuntu resolute/universe arm64 libglew2.2 arm64 2.2.0-4build1 [191 kB] 442s Get:71 http://ftpmaster.internal/ubuntu resolute/universe arm64 libsz2 arm64 1.1.3-1 [5254 B] 442s Get:72 http://ftpmaster.internal/ubuntu resolute/universe arm64 libhdf5-310 arm64 1.14.5+repack-3build1 [1331 kB] 442s Get:73 http://ftpmaster.internal/ubuntu resolute/universe arm64 libhdf5-hl-310 arm64 1.14.5+repack-3build1 [59.8 kB] 442s Get:74 http://ftpmaster.internal/ubuntu resolute/universe arm64 libhwloc15 arm64 2.12.2-1 [169 kB] 442s Get:75 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg-turbo8 arm64 2.1.5-4ubuntu2 [165 kB] 442s Get:76 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 442s Get:77 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 libjs-jquery all 3.7.1+dfsg+~3.5.33-1build1 [321 kB] 442s Get:78 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 443s Get:79 http://ftpmaster.internal/ubuntu resolute/main arm64 libjsoncpp26 arm64 1.9.6-3 [78.7 kB] 443s Get:80 http://ftpmaster.internal/ubuntu resolute/universe arm64 libkim-api2 arm64 2.3.0-1ubuntu1 [565 kB] 443s Get:81 http://ftpmaster.internal/ubuntu resolute/main arm64 liblapack3 arm64 3.12.1-6build1 [2340 kB] 443s Get:82 http://ftpmaster.internal/ubuntu resolute/universe arm64 libnetcdf22 arm64 1:4.9.3-1build1 [555 kB] 443s Get:83 http://ftpmaster.internal/ubuntu resolute/main arm64 libibumad3 arm64 56.1-1ubuntu1 [31.3 kB] 443s Get:84 http://ftpmaster.internal/ubuntu resolute/main arm64 libibmad5 arm64 56.1-1ubuntu1 [44.1 kB] 443s Get:85 http://ftpmaster.internal/ubuntu resolute/universe arm64 libucx0 arm64 1.19.0+ds-1 [1242 kB] 444s Get:86 http://ftpmaster.internal/ubuntu resolute/main arm64 libpciaccess0 arm64 0.18.1-1ubuntu2 [19.4 kB] 444s Get:87 http://ftpmaster.internal/ubuntu resolute/main arm64 libxnvctrl0 arm64 510.47.03-0ubuntu4 [12.4 kB] 444s Get:88 http://ftpmaster.internal/ubuntu resolute/main arm64 ocl-icd-libopencl1 arm64 2.3.3-1 [42.2 kB] 444s Get:89 http://ftpmaster.internal/ubuntu resolute/universe arm64 libhwloc-plugins arm64 2.12.2-1 [16.6 kB] 444s Get:90 http://ftpmaster.internal/ubuntu resolute/universe arm64 libopenmpi40 arm64 5.0.8-8ubuntu1 [3274 kB] 445s Get:91 http://ftpmaster.internal/ubuntu resolute/universe arm64 libpnetcdf6 arm64 1.14.0-2 [971 kB] 445s Get:92 http://ftpmaster.internal/ubuntu resolute/universe arm64 libvoro++1 arm64 0.5+revert-to-0.4.6+dfsg1-1 [101 kB] 445s Get:93 http://ftpmaster.internal/ubuntu resolute/main arm64 libogg0 arm64 1.3.5-3build1 [22.6 kB] 445s Get:94 http://ftpmaster.internal/ubuntu resolute/main arm64 libopengl0 arm64 1.7.0-1build2 [34.7 kB] 445s Get:95 http://ftpmaster.internal/ubuntu resolute/universe arm64 proj-data all 9.6.0-1 [7955 kB] 446s Get:96 http://ftpmaster.internal/ubuntu resolute/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB] 446s Get:97 http://ftpmaster.internal/ubuntu resolute/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB] 446s Get:98 http://ftpmaster.internal/ubuntu resolute/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB] 446s Get:99 http://ftpmaster.internal/ubuntu resolute/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB] 446s Get:100 http://ftpmaster.internal/ubuntu resolute/main arm64 libtiff6 arm64 4.7.0-3ubuntu3 [196 kB] 446s Get:101 http://ftpmaster.internal/ubuntu resolute/universe arm64 libproj25 arm64 9.6.0-1 [1358 kB] 446s Get:102 http://ftpmaster.internal/ubuntu resolute/universe arm64 libtbbbind-2-5 arm64 2022.1.0-1 [14.3 kB] 446s Get:103 http://ftpmaster.internal/ubuntu resolute/universe arm64 libtbbmalloc2 arm64 2022.1.0-1 [39.0 kB] 446s Get:104 http://ftpmaster.internal/ubuntu resolute/universe arm64 libtbb12 arm64 2022.1.0-1 [72.1 kB] 446s Get:105 http://ftpmaster.internal/ubuntu resolute/main arm64 libtcl8.6 arm64 8.6.17+dfsg-1 [1024 kB] 447s Get:106 http://ftpmaster.internal/ubuntu resolute/main arm64 libtheoradec1 arm64 1.2.0~alpha1+dfsg-6 [57.1 kB] 447s Get:107 http://ftpmaster.internal/ubuntu resolute/main arm64 libtheoraenc1 arm64 1.2.0~alpha1+dfsg-6 [107 kB] 447s Get:108 http://ftpmaster.internal/ubuntu resolute/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB] 447s Get:109 http://ftpmaster.internal/ubuntu resolute/main arm64 x11-common all 1:7.7+24ubuntu1 [22.4 kB] 447s Get:110 http://ftpmaster.internal/ubuntu resolute/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B] 447s Get:111 http://ftpmaster.internal/ubuntu resolute/main arm64 libtk8.6 arm64 8.6.17-1 [811 kB] 447s Get:112 http://ftpmaster.internal/ubuntu resolute/universe arm64 libvtk9.3 arm64 9.3.0+dfsg1-4ubuntu2 [24.0 MB] 449s Get:113 http://ftpmaster.internal/ubuntu resolute/universe arm64 liblammps0t64 arm64 20250204+dfsg.1-2 [7457 kB] 449s Get:114 http://ftpmaster.internal/ubuntu resolute/universe arm64 openmpi-common all 5.0.8-8ubuntu1 [108 kB] 449s Get:115 http://ftpmaster.internal/ubuntu resolute/main arm64 libnl-3-dev arm64 3.7.0-2build1 [111 kB] 449s Get:116 http://ftpmaster.internal/ubuntu resolute/main arm64 libnl-route-3-dev arm64 3.7.0-2build1 [245 kB] 449s Get:117 http://ftpmaster.internal/ubuntu resolute/main arm64 libibverbs-dev arm64 56.1-1ubuntu1 [703 kB] 449s Get:118 http://ftpmaster.internal/ubuntu resolute/main arm64 libnuma-dev arm64 2.0.19-1 [39.7 kB] 449s Get:119 http://ftpmaster.internal/ubuntu resolute/main arm64 libltdl7 arm64 2.5.4-4build1 [44.3 kB] 450s Get:120 http://ftpmaster.internal/ubuntu resolute/main arm64 libltdl-dev arm64 2.5.4-4build1 [174 kB] 450s Get:121 http://ftpmaster.internal/ubuntu resolute/universe arm64 libhwloc-dev arm64 2.12.2-1 [274 kB] 450s Get:122 http://ftpmaster.internal/ubuntu resolute/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu2 [899 kB] 450s Get:123 http://ftpmaster.internal/ubuntu resolute/universe arm64 openmpi-bin arm64 5.0.8-8ubuntu1 [209 kB] 451s Get:124 http://ftpmaster.internal/ubuntu resolute/universe arm64 libopenmpi-dev arm64 5.0.8-8ubuntu1 [1225 kB] 451s Get:125 http://ftpmaster.internal/ubuntu resolute/universe arm64 mpi-default-dev arm64 1.18 [3324 B] 451s Get:126 http://ftpmaster.internal/ubuntu resolute/universe arm64 liblammps-dev arm64 20250204+dfsg.1-2 [114 kB] 451s Get:127 http://ftpmaster.internal/ubuntu resolute/universe arm64 mpi-default-bin arm64 1.18 [2510 B] 451s Get:128 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-lammps arm64 20250204+dfsg.1-2 [75.4 kB] 452s Fetched 189 MB in 47s (3996 kB/s) 452s Selecting previously unselected package m4. 452s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83363 files and directories currently installed.) 452s Preparing to unpack .../000-m4_1.4.19-8_arm64.deb ... 452s Unpacking m4 (1.4.19-8) ... 452s Selecting previously unselected package autoconf. 452s Preparing to unpack .../001-autoconf_2.72-3.1ubuntu1_all.deb ... 452s Unpacking autoconf (2.72-3.1ubuntu1) ... 452s Selecting previously unselected package autotools-dev. 452s Preparing to unpack .../002-autotools-dev_20240727.1_all.deb ... 452s Unpacking autotools-dev (20240727.1) ... 452s Selecting previously unselected package automake. 452s Preparing to unpack .../003-automake_1%3a1.17-4ubuntu1_all.deb ... 452s Unpacking automake (1:1.17-4ubuntu1) ... 452s Selecting previously unselected package libisl23:arm64. 452s Preparing to unpack .../004-libisl23_0.27-1_arm64.deb ... 452s Unpacking libisl23:arm64 (0.27-1) ... 452s Selecting previously unselected package libmpc3:arm64. 452s Preparing to unpack .../005-libmpc3_1.3.1-1build3_arm64.deb ... 452s Unpacking libmpc3:arm64 (1.3.1-1build3) ... 452s Selecting previously unselected package cpp-15-aarch64-linux-gnu. 452s Preparing to unpack .../006-cpp-15-aarch64-linux-gnu_15.2.0-5ubuntu1_arm64.deb ... 452s Unpacking cpp-15-aarch64-linux-gnu (15.2.0-5ubuntu1) ... 452s Selecting previously unselected package cpp-15. 452s Preparing to unpack .../007-cpp-15_15.2.0-5ubuntu1_arm64.deb ... 452s Unpacking cpp-15 (15.2.0-5ubuntu1) ... 452s Selecting previously unselected package fonts-dejavu-mono. 452s Preparing to unpack .../008-fonts-dejavu-mono_2.37-8_all.deb ... 452s Unpacking fonts-dejavu-mono (2.37-8) ... 452s Selecting previously unselected package fonts-dejavu-core. 452s Preparing to unpack .../009-fonts-dejavu-core_2.37-8_all.deb ... 452s Unpacking fonts-dejavu-core (2.37-8) ... 452s Selecting previously unselected package fontconfig-config. 453s Preparing to unpack .../010-fontconfig-config_2.15.0-2.3ubuntu1_arm64.deb ... 453s Unpacking fontconfig-config (2.15.0-2.3ubuntu1) ... 453s Selecting previously unselected package libcc1-0:arm64. 453s Preparing to unpack .../011-libcc1-0_15.2.0-5ubuntu1_arm64.deb ... 453s Unpacking libcc1-0:arm64 (15.2.0-5ubuntu1) ... 453s Selecting previously unselected package libgomp1:arm64. 453s Preparing to unpack .../012-libgomp1_15.2.0-5ubuntu1_arm64.deb ... 453s Unpacking libgomp1:arm64 (15.2.0-5ubuntu1) ... 453s Selecting previously unselected package libitm1:arm64. 453s Preparing to unpack .../013-libitm1_15.2.0-5ubuntu1_arm64.deb ... 453s Unpacking libitm1:arm64 (15.2.0-5ubuntu1) ... 453s Selecting previously unselected package libasan8:arm64. 453s Preparing to unpack .../014-libasan8_15.2.0-5ubuntu1_arm64.deb ... 453s Unpacking libasan8:arm64 (15.2.0-5ubuntu1) ... 453s Selecting previously unselected package liblsan0:arm64. 453s Preparing to unpack .../015-liblsan0_15.2.0-5ubuntu1_arm64.deb ... 453s Unpacking liblsan0:arm64 (15.2.0-5ubuntu1) ... 453s Selecting previously unselected package libtsan2:arm64. 453s Preparing to unpack .../016-libtsan2_15.2.0-5ubuntu1_arm64.deb ... 453s Unpacking libtsan2:arm64 (15.2.0-5ubuntu1) ... 453s Selecting previously unselected package libubsan1:arm64. 453s Preparing to unpack .../017-libubsan1_15.2.0-5ubuntu1_arm64.deb ... 453s Unpacking libubsan1:arm64 (15.2.0-5ubuntu1) ... 453s Selecting previously unselected package libhwasan0:arm64. 453s Preparing to unpack .../018-libhwasan0_15.2.0-5ubuntu1_arm64.deb ... 453s Unpacking libhwasan0:arm64 (15.2.0-5ubuntu1) ... 453s Selecting previously unselected package libgcc-15-dev:arm64. 453s Preparing to unpack .../019-libgcc-15-dev_15.2.0-5ubuntu1_arm64.deb ... 453s Unpacking libgcc-15-dev:arm64 (15.2.0-5ubuntu1) ... 453s Selecting previously unselected package gcc-15-aarch64-linux-gnu. 453s Preparing to unpack .../020-gcc-15-aarch64-linux-gnu_15.2.0-5ubuntu1_arm64.deb ... 453s Unpacking gcc-15-aarch64-linux-gnu (15.2.0-5ubuntu1) ... 454s Selecting previously unselected package gcc-15. 454s Preparing to unpack .../021-gcc-15_15.2.0-5ubuntu1_arm64.deb ... 454s Unpacking gcc-15 (15.2.0-5ubuntu1) ... 454s Selecting previously unselected package libgfortran5:arm64. 454s Preparing to unpack .../022-libgfortran5_15.2.0-5ubuntu1_arm64.deb ... 454s Unpacking libgfortran5:arm64 (15.2.0-5ubuntu1) ... 454s Selecting previously unselected package libgfortran-15-dev:arm64. 454s Preparing to unpack .../023-libgfortran-15-dev_15.2.0-5ubuntu1_arm64.deb ... 454s Unpacking libgfortran-15-dev:arm64 (15.2.0-5ubuntu1) ... 454s Selecting previously unselected package gfortran-15-aarch64-linux-gnu. 454s Preparing to unpack .../024-gfortran-15-aarch64-linux-gnu_15.2.0-5ubuntu1_arm64.deb ... 454s Unpacking gfortran-15-aarch64-linux-gnu (15.2.0-5ubuntu1) ... 454s Selecting previously unselected package gfortran-15. 454s Preparing to unpack .../025-gfortran-15_15.2.0-5ubuntu1_arm64.deb ... 454s Unpacking gfortran-15 (15.2.0-5ubuntu1) ... 454s Selecting previously unselected package libaec0:arm64. 454s Preparing to unpack .../026-libaec0_1.1.3-1_arm64.deb ... 454s Unpacking libaec0:arm64 (1.1.3-1) ... 454s Selecting previously unselected package libllvm17t64:arm64. 454s Preparing to unpack .../027-libllvm17t64_1%3a17.0.6-22build1_arm64.deb ... 454s Unpacking libllvm17t64:arm64 (1:17.0.6-22build1) ... 455s Selecting previously unselected package libamd-comgr2:arm64. 455s Preparing to unpack .../028-libamd-comgr2_6.0+git20231212.4510c28+dfsg-3build3_arm64.deb ... 455s Unpacking libamd-comgr2:arm64 (6.0+git20231212.4510c28+dfsg-3build3) ... 455s Selecting previously unselected package libdrm-amdgpu1:arm64. 455s Preparing to unpack .../029-libdrm-amdgpu1_2.4.125-1_arm64.deb ... 455s Unpacking libdrm-amdgpu1:arm64 (2.4.125-1) ... 455s Selecting previously unselected package libhsakmt1:arm64. 455s Preparing to unpack .../030-libhsakmt1_6.2.4+ds-1_arm64.deb ... 455s Unpacking libhsakmt1:arm64 (6.2.4+ds-1) ... 455s Selecting previously unselected package libhsa-runtime64-1:arm64. 455s Preparing to unpack .../031-libhsa-runtime64-1_6.1.2-3_arm64.deb ... 455s Unpacking libhsa-runtime64-1:arm64 (6.1.2-3) ... 455s Selecting previously unselected package libamdhip64-5:arm64. 455s Preparing to unpack .../032-libamdhip64-5_5.7.1-6_arm64.deb ... 455s Unpacking libamdhip64-5:arm64 (5.7.1-6) ... 456s Selecting previously unselected package libblas3:arm64. 456s Preparing to unpack .../033-libblas3_3.12.1-6build1_arm64.deb ... 456s Unpacking libblas3:arm64 (3.12.1-6build1) ... 456s Selecting previously unselected package libfontconfig1:arm64. 456s Preparing to unpack .../034-libfontconfig1_2.15.0-2.3ubuntu1_arm64.deb ... 456s Unpacking libfontconfig1:arm64 (2.15.0-2.3ubuntu1) ... 456s Selecting previously unselected package libpixman-1-0:arm64. 456s Preparing to unpack .../035-libpixman-1-0_0.44.0-3_arm64.deb ... 456s Unpacking libpixman-1-0:arm64 (0.44.0-3) ... 456s Selecting previously unselected package libxcb-render0:arm64. 456s Preparing to unpack .../036-libxcb-render0_1.17.0-2build1_arm64.deb ... 456s Unpacking libxcb-render0:arm64 (1.17.0-2build1) ... 456s Selecting previously unselected package libxcb-shm0:arm64. 456s Preparing to unpack .../037-libxcb-shm0_1.17.0-2build1_arm64.deb ... 456s Unpacking libxcb-shm0:arm64 (1.17.0-2build1) ... 456s Selecting previously unselected package libxrender1:arm64. 456s Preparing to unpack .../038-libxrender1_1%3a0.9.12-1_arm64.deb ... 456s Unpacking libxrender1:arm64 (1:0.9.12-1) ... 456s Selecting previously unselected package libcairo2:arm64. 456s Preparing to unpack .../039-libcairo2_1.18.4-1build1_arm64.deb ... 456s Unpacking libcairo2:arm64 (1.18.4-1build1) ... 456s Selecting previously unselected package libdeflate0:arm64. 456s Preparing to unpack .../040-libdeflate0_1.23-2_arm64.deb ... 456s Unpacking libdeflate0:arm64 (1.23-2) ... 456s Selecting previously unselected package libdouble-conversion3:arm64. 456s Preparing to unpack .../041-libdouble-conversion3_3.3.1-1build1_arm64.deb ... 456s Unpacking libdouble-conversion3:arm64 (3.3.1-1build1) ... 456s Selecting previously unselected package libevent-2.1-7t64:arm64. 456s Preparing to unpack .../042-libevent-2.1-7t64_2.1.12-stable-10build1_arm64.deb ... 456s Unpacking libevent-2.1-7t64:arm64 (2.1.12-stable-10build1) ... 456s Selecting previously unselected package libevent-core-2.1-7t64:arm64. 456s Preparing to unpack .../043-libevent-core-2.1-7t64_2.1.12-stable-10build1_arm64.deb ... 456s Unpacking libevent-core-2.1-7t64:arm64 (2.1.12-stable-10build1) ... 456s Selecting previously unselected package libevent-extra-2.1-7t64:arm64. 456s Preparing to unpack .../044-libevent-extra-2.1-7t64_2.1.12-stable-10build1_arm64.deb ... 456s Unpacking libevent-extra-2.1-7t64:arm64 (2.1.12-stable-10build1) ... 456s Selecting previously unselected package libevent-pthreads-2.1-7t64:arm64. 456s Preparing to unpack .../045-libevent-pthreads-2.1-7t64_2.1.12-stable-10build1_arm64.deb ... 456s Unpacking libevent-pthreads-2.1-7t64:arm64 (2.1.12-stable-10build1) ... 456s Selecting previously unselected package libevent-openssl-2.1-7t64:arm64. 456s Preparing to unpack .../046-libevent-openssl-2.1-7t64_2.1.12-stable-10build1_arm64.deb ... 456s Unpacking libevent-openssl-2.1-7t64:arm64 (2.1.12-stable-10build1) ... 456s Selecting previously unselected package libevent-dev. 456s Preparing to unpack .../047-libevent-dev_2.1.12-stable-10build1_arm64.deb ... 456s Unpacking libevent-dev (2.1.12-stable-10build1) ... 456s Selecting previously unselected package librdmacm1t64:arm64. 456s Preparing to unpack .../048-librdmacm1t64_56.1-1ubuntu1_arm64.deb ... 456s Unpacking librdmacm1t64:arm64 (56.1-1ubuntu1) ... 456s Selecting previously unselected package libfabric1:arm64. 456s Preparing to unpack .../049-libfabric1_2.1.0-1.1_arm64.deb ... 456s Unpacking libfabric1:arm64 (2.1.0-1.1) ... 456s Selecting previously unselected package libfftw3-double3:arm64. 456s Preparing to unpack .../050-libfftw3-double3_3.3.10-2fakesync1build2_arm64.deb ... 456s Unpacking libfftw3-double3:arm64 (3.3.10-2fakesync1build2) ... 456s Selecting previously unselected package libx11-xcb1:arm64. 456s Preparing to unpack .../051-libx11-xcb1_2%3a1.8.12-1build1_arm64.deb ... 456s Unpacking libx11-xcb1:arm64 (2:1.8.12-1build1) ... 456s Selecting previously unselected package libxcb-dri3-0:arm64. 456s Preparing to unpack .../052-libxcb-dri3-0_1.17.0-2build1_arm64.deb ... 456s Unpacking libxcb-dri3-0:arm64 (1.17.0-2build1) ... 456s Selecting previously unselected package libxcb-present0:arm64. 456s Preparing to unpack .../053-libxcb-present0_1.17.0-2build1_arm64.deb ... 456s Unpacking libxcb-present0:arm64 (1.17.0-2build1) ... 456s Selecting previously unselected package libxcb-randr0:arm64. 456s Preparing to unpack .../054-libxcb-randr0_1.17.0-2build1_arm64.deb ... 456s Unpacking libxcb-randr0:arm64 (1.17.0-2build1) ... 456s Selecting previously unselected package libxcb-sync1:arm64. 456s Preparing to unpack .../055-libxcb-sync1_1.17.0-2build1_arm64.deb ... 456s Unpacking libxcb-sync1:arm64 (1.17.0-2build1) ... 456s Selecting previously unselected package libxcb-xfixes0:arm64. 456s Preparing to unpack .../056-libxcb-xfixes0_1.17.0-2build1_arm64.deb ... 456s Unpacking libxcb-xfixes0:arm64 (1.17.0-2build1) ... 456s Selecting previously unselected package libxshmfence1:arm64. 456s Preparing to unpack .../057-libxshmfence1_1.3.3-1_arm64.deb ... 456s Unpacking libxshmfence1:arm64 (1.3.3-1) ... 456s Selecting previously unselected package mesa-libgallium:arm64. 456s Preparing to unpack .../058-mesa-libgallium_25.2.3-1ubuntu1_arm64.deb ... 456s Unpacking mesa-libgallium:arm64 (25.2.3-1ubuntu1) ... 457s Selecting previously unselected package libgbm1:arm64. 457s Preparing to unpack .../059-libgbm1_25.2.3-1ubuntu1_arm64.deb ... 457s Unpacking libgbm1:arm64 (25.2.3-1ubuntu1) ... 457s Selecting previously unselected package libvulkan1:arm64. 457s Preparing to unpack .../060-libvulkan1_1.4.321.0-1_arm64.deb ... 457s Unpacking libvulkan1:arm64 (1.4.321.0-1) ... 457s Selecting previously unselected package libgl1-mesa-dri:arm64. 457s Preparing to unpack .../061-libgl1-mesa-dri_25.2.3-1ubuntu1_arm64.deb ... 457s Unpacking libgl1-mesa-dri:arm64 (25.2.3-1ubuntu1) ... 457s Selecting previously unselected package libglvnd0:arm64. 457s Preparing to unpack .../062-libglvnd0_1.7.0-1build2_arm64.deb ... 457s Unpacking libglvnd0:arm64 (1.7.0-1build2) ... 457s Selecting previously unselected package libxcb-glx0:arm64. 457s Preparing to unpack .../063-libxcb-glx0_1.17.0-2build1_arm64.deb ... 457s Unpacking libxcb-glx0:arm64 (1.17.0-2build1) ... 457s Selecting previously unselected package libxxf86vm1:arm64. 457s Preparing to unpack .../064-libxxf86vm1_1%3a1.1.4-1build4_arm64.deb ... 457s Unpacking libxxf86vm1:arm64 (1:1.1.4-1build4) ... 457s Selecting previously unselected package libglx-mesa0:arm64. 457s Preparing to unpack .../065-libglx-mesa0_25.2.3-1ubuntu1_arm64.deb ... 457s Unpacking libglx-mesa0:arm64 (25.2.3-1ubuntu1) ... 457s Selecting previously unselected package libglx0:arm64. 457s Preparing to unpack .../066-libglx0_1.7.0-1build2_arm64.deb ... 457s Unpacking libglx0:arm64 (1.7.0-1build2) ... 457s Selecting previously unselected package libgl1:arm64. 457s Preparing to unpack .../067-libgl1_1.7.0-1build2_arm64.deb ... 457s Unpacking libgl1:arm64 (1.7.0-1build2) ... 457s Selecting previously unselected package libgl2ps1.4. 457s Preparing to unpack .../068-libgl2ps1.4_1.4.2+dfsg1-2build1_arm64.deb ... 457s Unpacking libgl2ps1.4 (1.4.2+dfsg1-2build1) ... 457s Selecting previously unselected package libglew2.2:arm64. 457s Preparing to unpack .../069-libglew2.2_2.2.0-4build1_arm64.deb ... 457s Unpacking libglew2.2:arm64 (2.2.0-4build1) ... 457s Selecting previously unselected package libsz2:arm64. 457s Preparing to unpack .../070-libsz2_1.1.3-1_arm64.deb ... 457s Unpacking libsz2:arm64 (1.1.3-1) ... 457s Selecting previously unselected package libhdf5-310:arm64. 457s Preparing to unpack .../071-libhdf5-310_1.14.5+repack-3build1_arm64.deb ... 457s Unpacking libhdf5-310:arm64 (1.14.5+repack-3build1) ... 457s Selecting previously unselected package libhdf5-hl-310:arm64. 457s Preparing to unpack .../072-libhdf5-hl-310_1.14.5+repack-3build1_arm64.deb ... 457s Unpacking libhdf5-hl-310:arm64 (1.14.5+repack-3build1) ... 457s Selecting previously unselected package libhwloc15:arm64. 457s Preparing to unpack .../073-libhwloc15_2.12.2-1_arm64.deb ... 457s Unpacking libhwloc15:arm64 (2.12.2-1) ... 457s Selecting previously unselected package libjpeg-turbo8:arm64. 457s Preparing to unpack .../074-libjpeg-turbo8_2.1.5-4ubuntu2_arm64.deb ... 457s Unpacking libjpeg-turbo8:arm64 (2.1.5-4ubuntu2) ... 457s Selecting previously unselected package libjpeg8:arm64. 457s Preparing to unpack .../075-libjpeg8_8c-2ubuntu11_arm64.deb ... 457s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 457s Selecting previously unselected package libjs-jquery. 457s Preparing to unpack .../076-libjs-jquery_3.7.1+dfsg+~3.5.33-1build1_all.deb ... 457s Unpacking libjs-jquery (3.7.1+dfsg+~3.5.33-1build1) ... 457s Selecting previously unselected package libjs-jquery-ui. 457s Preparing to unpack .../077-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 457s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 458s Selecting previously unselected package libjsoncpp26:arm64. 458s Preparing to unpack .../078-libjsoncpp26_1.9.6-3_arm64.deb ... 458s Unpacking libjsoncpp26:arm64 (1.9.6-3) ... 458s Selecting previously unselected package libkim-api2:arm64. 458s Preparing to unpack .../079-libkim-api2_2.3.0-1ubuntu1_arm64.deb ... 458s Unpacking libkim-api2:arm64 (2.3.0-1ubuntu1) ... 458s Selecting previously unselected package liblapack3:arm64. 458s Preparing to unpack .../080-liblapack3_3.12.1-6build1_arm64.deb ... 458s Unpacking liblapack3:arm64 (3.12.1-6build1) ... 458s Selecting previously unselected package libnetcdf22:arm64. 458s Preparing to unpack .../081-libnetcdf22_1%3a4.9.3-1build1_arm64.deb ... 458s Unpacking libnetcdf22:arm64 (1:4.9.3-1build1) ... 458s Selecting previously unselected package libibumad3:arm64. 458s Preparing to unpack .../082-libibumad3_56.1-1ubuntu1_arm64.deb ... 458s Unpacking libibumad3:arm64 (56.1-1ubuntu1) ... 458s Selecting previously unselected package libibmad5:arm64. 458s Preparing to unpack .../083-libibmad5_56.1-1ubuntu1_arm64.deb ... 458s Unpacking libibmad5:arm64 (56.1-1ubuntu1) ... 458s Selecting previously unselected package libucx0:arm64. 458s Preparing to unpack .../084-libucx0_1.19.0+ds-1_arm64.deb ... 458s Unpacking libucx0:arm64 (1.19.0+ds-1) ... 458s Selecting previously unselected package libpciaccess0:arm64. 458s Preparing to unpack .../085-libpciaccess0_0.18.1-1ubuntu2_arm64.deb ... 458s Unpacking libpciaccess0:arm64 (0.18.1-1ubuntu2) ... 458s Selecting previously unselected package libxnvctrl0:arm64. 458s Preparing to unpack .../086-libxnvctrl0_510.47.03-0ubuntu4_arm64.deb ... 458s Unpacking libxnvctrl0:arm64 (510.47.03-0ubuntu4) ... 458s Selecting previously unselected package ocl-icd-libopencl1:arm64. 458s Preparing to unpack .../087-ocl-icd-libopencl1_2.3.3-1_arm64.deb ... 458s Unpacking ocl-icd-libopencl1:arm64 (2.3.3-1) ... 458s Selecting previously unselected package libhwloc-plugins:arm64. 458s Preparing to unpack .../088-libhwloc-plugins_2.12.2-1_arm64.deb ... 458s Unpacking libhwloc-plugins:arm64 (2.12.2-1) ... 458s Selecting previously unselected package libopenmpi40:arm64. 458s Preparing to unpack .../089-libopenmpi40_5.0.8-8ubuntu1_arm64.deb ... 458s Unpacking libopenmpi40:arm64 (5.0.8-8ubuntu1) ... 458s Selecting previously unselected package libpnetcdf6:arm64. 458s Preparing to unpack .../090-libpnetcdf6_1.14.0-2_arm64.deb ... 458s Unpacking libpnetcdf6:arm64 (1.14.0-2) ... 458s Selecting previously unselected package libvoro++1. 458s Preparing to unpack .../091-libvoro++1_0.5+revert-to-0.4.6+dfsg1-1_arm64.deb ... 458s Unpacking libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ... 458s Selecting previously unselected package libogg0:arm64. 458s Preparing to unpack .../092-libogg0_1.3.5-3build1_arm64.deb ... 458s Unpacking libogg0:arm64 (1.3.5-3build1) ... 458s Selecting previously unselected package libopengl0:arm64. 458s Preparing to unpack .../093-libopengl0_1.7.0-1build2_arm64.deb ... 458s Unpacking libopengl0:arm64 (1.7.0-1build2) ... 458s Selecting previously unselected package proj-data. 458s Preparing to unpack .../094-proj-data_9.6.0-1_all.deb ... 458s Unpacking proj-data (9.6.0-1) ... 458s Selecting previously unselected package libjbig0:arm64. 458s Preparing to unpack .../095-libjbig0_2.1-6.1ubuntu2_arm64.deb ... 458s Unpacking libjbig0:arm64 (2.1-6.1ubuntu2) ... 459s Selecting previously unselected package liblerc4:arm64. 459s Preparing to unpack .../096-liblerc4_4.0.0+ds-5ubuntu1_arm64.deb ... 459s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 459s Selecting previously unselected package libsharpyuv0:arm64. 459s Preparing to unpack .../097-libsharpyuv0_1.5.0-0.1_arm64.deb ... 459s Unpacking libsharpyuv0:arm64 (1.5.0-0.1) ... 459s Selecting previously unselected package libwebp7:arm64. 459s Preparing to unpack .../098-libwebp7_1.5.0-0.1_arm64.deb ... 459s Unpacking libwebp7:arm64 (1.5.0-0.1) ... 459s Selecting previously unselected package libtiff6:arm64. 459s Preparing to unpack .../099-libtiff6_4.7.0-3ubuntu3_arm64.deb ... 459s Unpacking libtiff6:arm64 (4.7.0-3ubuntu3) ... 459s Selecting previously unselected package libproj25:arm64. 459s Preparing to unpack .../100-libproj25_9.6.0-1_arm64.deb ... 459s Unpacking libproj25:arm64 (9.6.0-1) ... 459s Selecting previously unselected package libtbbbind-2-5:arm64. 459s Preparing to unpack .../101-libtbbbind-2-5_2022.1.0-1_arm64.deb ... 459s Unpacking libtbbbind-2-5:arm64 (2022.1.0-1) ... 459s Selecting previously unselected package libtbbmalloc2:arm64. 459s Preparing to unpack .../102-libtbbmalloc2_2022.1.0-1_arm64.deb ... 459s Unpacking libtbbmalloc2:arm64 (2022.1.0-1) ... 459s Selecting previously unselected package libtbb12:arm64. 459s Preparing to unpack .../103-libtbb12_2022.1.0-1_arm64.deb ... 459s Unpacking libtbb12:arm64 (2022.1.0-1) ... 459s Selecting previously unselected package libtcl8.6:arm64. 459s Preparing to unpack .../104-libtcl8.6_8.6.17+dfsg-1_arm64.deb ... 459s Unpacking libtcl8.6:arm64 (8.6.17+dfsg-1) ... 459s Selecting previously unselected package libtheoradec1:arm64. 459s Preparing to unpack .../105-libtheoradec1_1.2.0~alpha1+dfsg-6_arm64.deb ... 459s Unpacking libtheoradec1:arm64 (1.2.0~alpha1+dfsg-6) ... 459s Selecting previously unselected package libtheoraenc1:arm64. 459s Preparing to unpack .../106-libtheoraenc1_1.2.0~alpha1+dfsg-6_arm64.deb ... 459s Unpacking libtheoraenc1:arm64 (1.2.0~alpha1+dfsg-6) ... 459s Selecting previously unselected package libxft2:arm64. 459s Preparing to unpack .../107-libxft2_2.3.6-1build1_arm64.deb ... 459s Unpacking libxft2:arm64 (2.3.6-1build1) ... 459s Selecting previously unselected package x11-common. 459s Preparing to unpack .../108-x11-common_1%3a7.7+24ubuntu1_all.deb ... 459s Unpacking x11-common (1:7.7+24ubuntu1) ... 459s Selecting previously unselected package libxss1:arm64. 459s Preparing to unpack .../109-libxss1_1%3a1.2.3-1build3_arm64.deb ... 459s Unpacking libxss1:arm64 (1:1.2.3-1build3) ... 459s Selecting previously unselected package libtk8.6:arm64. 459s Preparing to unpack .../110-libtk8.6_8.6.17-1_arm64.deb ... 459s Unpacking libtk8.6:arm64 (8.6.17-1) ... 459s Selecting previously unselected package libvtk9.3:arm64. 459s Preparing to unpack .../111-libvtk9.3_9.3.0+dfsg1-4ubuntu2_arm64.deb ... 459s Unpacking libvtk9.3:arm64 (9.3.0+dfsg1-4ubuntu2) ... 460s Selecting previously unselected package liblammps0t64:arm64. 460s Preparing to unpack .../112-liblammps0t64_20250204+dfsg.1-2_arm64.deb ... 460s Unpacking liblammps0t64:arm64 (20250204+dfsg.1-2) ... 460s Selecting previously unselected package openmpi-common. 460s Preparing to unpack .../113-openmpi-common_5.0.8-8ubuntu1_all.deb ... 460s Unpacking openmpi-common (5.0.8-8ubuntu1) ... 460s Selecting previously unselected package libnl-3-dev:arm64. 460s Preparing to unpack .../114-libnl-3-dev_3.7.0-2build1_arm64.deb ... 460s Unpacking libnl-3-dev:arm64 (3.7.0-2build1) ... 460s Selecting previously unselected package libnl-route-3-dev:arm64. 460s Preparing to unpack .../115-libnl-route-3-dev_3.7.0-2build1_arm64.deb ... 460s Unpacking libnl-route-3-dev:arm64 (3.7.0-2build1) ... 460s Selecting previously unselected package libibverbs-dev:arm64. 460s Preparing to unpack .../116-libibverbs-dev_56.1-1ubuntu1_arm64.deb ... 460s Unpacking libibverbs-dev:arm64 (56.1-1ubuntu1) ... 460s Selecting previously unselected package libnuma-dev:arm64. 460s Preparing to unpack .../117-libnuma-dev_2.0.19-1_arm64.deb ... 460s Unpacking libnuma-dev:arm64 (2.0.19-1) ... 460s Selecting previously unselected package libltdl7:arm64. 460s Preparing to unpack .../118-libltdl7_2.5.4-4build1_arm64.deb ... 460s Unpacking libltdl7:arm64 (2.5.4-4build1) ... 460s Selecting previously unselected package libltdl-dev:arm64. 460s Preparing to unpack .../119-libltdl-dev_2.5.4-4build1_arm64.deb ... 460s Unpacking libltdl-dev:arm64 (2.5.4-4build1) ... 460s Selecting previously unselected package libhwloc-dev:arm64. 460s Preparing to unpack .../120-libhwloc-dev_2.12.2-1_arm64.deb ... 460s Unpacking libhwloc-dev:arm64 (2.12.2-1) ... 460s Selecting previously unselected package zlib1g-dev:arm64. 460s Preparing to unpack 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(5.0.8-8ubuntu1) ... 462s update-alternatives: using /usr/lib/aarch64-linux-gnu/openmpi/include to provide /usr/include/aarch64-linux-gnu/mpi (mpi-aarch64-linux-gnu) in auto mode 462s Setting up mpi-default-dev (1.18) ... 462s Setting up liblammps-dev (20250204+dfsg.1-2) ... 462s Setting up python3-lammps (20250204+dfsg.1-2) ... 462s Processing triggers for man-db (2.13.1-1) ... 463s Processing triggers for install-info (7.1.1-1ubuntu1) ... 463s Processing triggers for libc-bin (2.42-0ubuntu3) ... 505s autopkgtest [00:57:43]: test command1: cd python/examples; python3 demo.py 505s autopkgtest [00:57:43]: test command1: [----------------------- 506s LAMMPS (4 Feb 2025) 506s 506s Python output: 506s Natoms, mass, x[0][0] coord = 4000 1.0 16.651271530416228 506s Temperature from compute = 0.7683848148006238 506s Energy from equal-style variable = -5.774392400140566 506s Velocity component from atom-style variable = -0.1669643026996425 506s Volume from get_thermo = 4738.213693437576 506s Natoms from get_natoms = 4000 506s Global coords from gather_atoms = 16.651271530416228 16.790010773016775 0.19047524160174037 506s Changed x[0][0] via scatter_atoms = 17.651271530416228 506s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 506s using 1 OpenMP thread(s) per MPI task 506s Lattice spacing in x,y,z = 1.6795962 1.6795962 1.6795962 506s Created orthogonal box = (0 0 0) to (16.795962 16.795962 16.795962) 506s 1 by 1 by 1 MPI processor grid 506s Created 4000 atoms 506s using lattice units in orthogonal box = (0 0 0) to (16.795962 16.795962 16.795962) 506s create_atoms CPU = 0.001 seconds 506s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 506s Neighbor list info ... 506s update: every = 20 steps, delay = 0 steps, check = no 506s max neighbors/atom: 2000, page size: 100000 506s master list distance cutoff = 2.8 506s ghost atom cutoff = 2.8 506s binsize = 1.4, bins = 12 12 12 506s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 506s (1) pair lj/cut, perpetual 506s attributes: half, newton on 506s pair build: half/bin/atomonly/newton 506s stencil: half/bin/3d 506s bin: standard 506s Setting up Verlet run ... 506s Unit style : lj 506s Current step : 0 506s Time step : 0.005 506s Per MPI rank memory allocation (min/avg/max) = 3.763 | 3.763 | 3.763 Mbytes 506s Step Temp E_pair E_mol TotEng Press 506s 0 1.44 -6.7733681 0 -4.6139081 -5.0199732 506s 100 0.76838481 -5.7743924 0 -4.6221033 0.13682061 506s Loop time of 0.228493 on 1 procs for 100 steps with 4000 atoms 506s 506s Performance: 189064.860 tau/day, 437.650 timesteps/s, 1.751 Matom-step/s 506s 99.8% CPU use with 1 MPI tasks x 1 OpenMP threads 506s 506s MPI task timing breakdown: 506s Section | min time | avg time | max time |%varavg| %total 506s --------------------------------------------------------------- 506s Pair | 0.19173 | 0.19173 | 0.19173 | 0.0 | 83.91 506s Neigh | 0.027355 | 0.027355 | 0.027355 | 0.0 | 11.97 506s Comm | 0.0046092 | 0.0046092 | 0.0046092 | 0.0 | 2.02 506s Output | 3.8241e-05 | 3.8241e-05 | 3.8241e-05 | 0.0 | 0.02 506s Modify | 0.0041121 | 0.0041121 | 0.0041121 | 0.0 | 1.80 506s Other | | 0.0006499 | | | 0.28 506s 506s Nlocal: 4000 ave 4000 max 4000 min 506s Histogram: 1 0 0 0 0 0 0 0 0 0 506s Nghost: 5758 ave 5758 max 5758 min 506s Histogram: 1 0 0 0 0 0 0 0 0 0 506s Neighs: 150488 ave 150488 max 150488 min 506s Histogram: 1 0 0 0 0 0 0 0 0 0 506s 506s Total # of neighbors = 150488 506s Ave neighs/atom = 37.622 506s Neighbor list builds = 5 506s Dangerous builds not checked 506s Total wall time: 0:00:00 506s autopkgtest [00:57:44]: test command1: -----------------------] 507s autopkgtest [00:57:45]: test command1: - - - - - - - - - - results - - - - - - - - - - 507s command1 PASS 507s autopkgtest [00:57:45]: @@@@@@@@@@@@@@@@@@@@ summary 507s crack PASS 507s dipole PASS 507s ellipse PASS 507s flow PASS 507s friction PASS 507s hugo PASS 507s command1 PASS