0s autopkgtest [18:38:02]: starting date and time: 2025-10-18 18:38:02+0000 0s autopkgtest [18:38:02]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [18:38:02]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.felhdry8/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults --apt-upgrade lammps --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=python3-defaults/3.13.7-2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-3.secgroup --name adt-resolute-arm64-lammps-20251018-183801-juju-7f2275-prod-proposed-migration-environment-2-f974c937-5922-4c00-92cb-3597064b74ff --image adt/ubuntu-resolute-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 3s Creating nova instance adt-resolute-arm64-lammps-20251018-183801-juju-7f2275-prod-proposed-migration-environment-2-f974c937-5922-4c00-92cb-3597064b74ff from image adt/ubuntu-resolute-arm64-server-20251018.img (UUID f7a49384-4e4d-4350-9a26-1f59236f89dd)... 60s autopkgtest [18:39:02]: testbed dpkg architecture: arm64 60s autopkgtest [18:39:02]: testbed apt version: 3.1.6ubuntu2 61s autopkgtest [18:39:03]: @@@@@@@@@@@@@@@@@@@@ test bed setup 61s autopkgtest [18:39:03]: testbed release detected to be: None 62s autopkgtest [18:39:04]: updating testbed package index (apt update) 62s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [83.3 kB] 62s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 63s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 63s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 63s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [16.7 kB] 63s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [456 kB] 63s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [50.7 kB] 63s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [5028 B] 63s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 Packages [99.7 kB] 63s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 Packages [43.8 kB] 63s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 Packages [322 kB] 63s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 Packages [6524 B] 63s Fetched 1083 kB in 1s (1016 kB/s) 65s Reading package lists... 66s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 66s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 66s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 66s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 67s Reading package lists... 67s Reading package lists... 67s Building dependency tree... 67s Reading state information... 68s Calculating upgrade... 68s The following packages will be upgraded: 68s apt flash-kernel gir1.2-girepository-2.0 libapt-pkg7.0 libgirepository-1.0-1 68s libpython3-stdlib lto-disabled-list python3 python3-minimal 69s 9 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 69s Need to get 2671 kB of archives. 69s After this operation, 66.6 kB of additional disk space will be used. 69s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 python3-minimal arm64 3.13.7-2 [27.8 kB] 69s Get:2 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 python3 arm64 3.13.7-2 [23.9 kB] 69s Get:3 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 libpython3-stdlib arm64 3.13.7-2 [10.6 kB] 69s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 libapt-pkg7.0 arm64 3.1.8ubuntu1 [1055 kB] 69s Get:5 http://ftpmaster.internal/ubuntu resolute/main arm64 apt arm64 3.1.8ubuntu1 [1373 kB] 70s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 libgirepository-1.0-1 arm64 1.86.0-6 [84.5 kB] 70s Get:7 http://ftpmaster.internal/ubuntu resolute/main arm64 gir1.2-girepository-2.0 arm64 1.86.0-6 [25.3 kB] 70s Get:8 http://ftpmaster.internal/ubuntu resolute/main arm64 flash-kernel arm64 3.109ubuntu7 [58.8 kB] 70s Get:9 http://ftpmaster.internal/ubuntu resolute/main arm64 lto-disabled-list all 71 [12.5 kB] 70s dpkg-preconfigure: unable to re-open stdin: No such file or directory 70s Fetched 2671 kB in 1s (2414 kB/s) 71s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83359 files and directories currently installed.) 71s Preparing to unpack .../python3-minimal_3.13.7-2_arm64.deb ... 71s Unpacking python3-minimal (3.13.7-2) over (3.13.7-1) ... 71s Setting up python3-minimal (3.13.7-2) ... 71s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83359 files and directories currently installed.) 71s Preparing to unpack .../0-python3_3.13.7-2_arm64.deb ... 71s running python pre-rtupdate hooks for python3.13... 71s Unpacking python3 (3.13.7-2) over (3.13.7-1) ... 71s Preparing to unpack .../1-libpython3-stdlib_3.13.7-2_arm64.deb ... 71s Unpacking libpython3-stdlib:arm64 (3.13.7-2) over (3.13.7-1) ... 71s Preparing to unpack .../2-libapt-pkg7.0_3.1.8ubuntu1_arm64.deb ... 71s Unpacking libapt-pkg7.0:arm64 (3.1.8ubuntu1) over (3.1.6ubuntu2) ... 72s Preparing to unpack .../3-apt_3.1.8ubuntu1_arm64.deb ... 72s Unpacking apt (3.1.8ubuntu1) over (3.1.6ubuntu2) ... 72s Preparing to unpack .../4-libgirepository-1.0-1_1.86.0-6_arm64.deb ... 72s Unpacking libgirepository-1.0-1:arm64 (1.86.0-6) over (1.84.0-1) ... 72s Preparing to unpack .../5-gir1.2-girepository-2.0_1.86.0-6_arm64.deb ... 72s Unpacking gir1.2-girepository-2.0:arm64 (1.86.0-6) over (1.84.0-1) ... 72s Preparing to unpack .../6-flash-kernel_3.109ubuntu7_arm64.deb ... 72s Unpacking flash-kernel (3.109ubuntu7) over (3.109ubuntu6) ... 72s Preparing to unpack .../7-lto-disabled-list_71_all.deb ... 72s Unpacking lto-disabled-list (71) over (69) ... 72s Setting up lto-disabled-list (71) ... 72s Setting up libgirepository-1.0-1:arm64 (1.86.0-6) ... 73s Setting up libapt-pkg7.0:arm64 (3.1.8ubuntu1) ... 73s Setting up libpython3-stdlib:arm64 (3.13.7-2) ... 73s Setting up apt (3.1.8ubuntu1) ... 73s Setting up python3 (3.13.7-2) ... 73s running python rtupdate hooks for python3.13... 73s running python post-rtupdate hooks for python3.13... 74s Setting up gir1.2-girepository-2.0:arm64 (1.86.0-6) ... 74s Setting up flash-kernel (3.109ubuntu7) ... 74s flash-kernel: deferring update (trigger activated) 74s Processing triggers for libc-bin (2.42-0ubuntu3) ... 74s Processing triggers for man-db (2.13.1-1) ... 77s Processing triggers for initramfs-tools (0.150ubuntu3) ... 77s update-initramfs: Generating /boot/initrd.img-6.17.0-5-generic 101s System running in EFI mode, skipping. 101s Processing triggers for flash-kernel (3.109ubuntu7) ... 101s System running in EFI mode, skipping. 101s autopkgtest [18:39:43]: upgrading testbed (apt dist-upgrade and autopurge) 102s Reading package lists... 103s Building dependency tree... 103s Reading state information... 103s Calculating upgrade... 103s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 104s Reading package lists... 104s Building dependency tree... 104s Reading state information... 104s Solving dependencies... 105s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 106s autopkgtest [18:39:48]: rebooting testbed after setup commands that affected boot 134s autopkgtest [18:40:16]: testbed running kernel: Linux 6.17.0-5-generic #5-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 22 09:50:31 UTC 2025 136s autopkgtest [18:40:18]: @@@@@@@@@@@@@@@@@@@@ apt-source lammps 148s Get:1 http://ftpmaster.internal/ubuntu resolute/universe lammps 20250204+dfsg.1-2 (dsc) [3212 B] 148s Get:2 http://ftpmaster.internal/ubuntu resolute/universe lammps 20250204+dfsg.1-2 (tar) [132 MB] 148s Get:3 http://ftpmaster.internal/ubuntu resolute/universe lammps 20250204+dfsg.1-2 (diff) [17.3 kB] 149s gpgv: Signature made Mon Mar 3 06:11:14 2025 UTC 149s gpgv: using RSA key BBBD45EA818AB86FF67E7285D3E17383CFA7FF06 149s gpgv: Can't check signature: No public key 149s dpkg-source: warning: cannot verify inline signature for ./lammps_20250204+dfsg.1-2.dsc: no acceptable signature found 154s autopkgtest [18:40:36]: testing package lammps version 20250204+dfsg.1-2 155s autopkgtest [18:40:37]: build not needed 173s autopkgtest [18:40:55]: test crack: preparing testbed 173s Reading package lists... 173s Building dependency tree... 173s Reading state information... 173s Solving dependencies... 174s The following NEW packages will be installed: 174s fontconfig-config fonts-dejavu-core fonts-dejavu-mono lammps lammps-data 174s libaec0 libamd-comgr2 libamdhip64-5 libblas3 libcairo2 libdeflate0 174s libdouble-conversion3 libdrm-amdgpu1 libevent-core-2.1-7t64 174s libevent-pthreads-2.1-7t64 libfabric1 libfftw3-double3 libfontconfig1 174s libgbm1 libgfortran5 libgl1 libgl1-mesa-dri libgl2ps1.4 libglew2.2 libglvnd0 174s libglx-mesa0 libglx0 libgomp1 libhdf5-310 libhdf5-hl-310 libhsa-runtime64-1 174s libhsakmt1 libhwloc-plugins libhwloc15 libibmad5 libibumad3 libjbig0 174s libjpeg-turbo8 libjpeg8 libjsoncpp26 libkim-api2 liblammps0t64 liblapack3 174s liblerc4 libllvm17t64 libnetcdf22 libogg0 libopengl0 libopenmpi40 174s libpciaccess0 libpixman-1-0 libpnetcdf6 libproj25 librdmacm1t64 libsharpyuv0 174s libsz2 libtbb12 libtbbbind-2-5 libtbbmalloc2 libtcl8.6 libtheoradec1 174s libtheoraenc1 libtiff6 libtk8.6 libucx0 libvoro++1 libvtk9.3 libvulkan1 174s libwebp7 libx11-xcb1 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 174s libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxft2 libxnvctrl0 174s libxrender1 libxshmfence1 libxss1 libxxf86vm1 mesa-libgallium 174s mpi-default-bin ocl-icd-libopencl1 openmpi-bin openmpi-common proj-data 174s x11-common 174s 0 upgraded, 91 newly installed, 0 to remove and 0 not upgraded. 174s Need to get 132 MB of archives. 174s After this operation, 594 MB of additional disk space will be used. 174s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 175s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 175s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 fontconfig-config arm64 2.15.0-2.3ubuntu1 [38.1 kB] 175s Get:4 http://ftpmaster.internal/ubuntu resolute/universe arm64 lammps-data all 20250204+dfsg.1-2 [10.2 MB] 176s Get:5 http://ftpmaster.internal/ubuntu resolute/universe arm64 libaec0 arm64 1.1.3-1 [22.0 kB] 176s Get:6 http://ftpmaster.internal/ubuntu resolute/universe arm64 libllvm17t64 arm64 1:17.0.6-22build1 [24.8 MB] 178s Get:7 http://ftpmaster.internal/ubuntu resolute/universe arm64 libamd-comgr2 arm64 6.0+git20231212.4510c28+dfsg-3build3 [14.0 MB] 178s Get:8 http://ftpmaster.internal/ubuntu resolute/main arm64 libdrm-amdgpu1 arm64 2.4.125-1 [21.6 kB] 178s Get:9 http://ftpmaster.internal/ubuntu resolute/universe arm64 libhsakmt1 arm64 6.2.4+ds-1 [64.7 kB] 178s Get:10 http://ftpmaster.internal/ubuntu resolute/universe arm64 libhsa-runtime64-1 arm64 6.1.2-3 [305 kB] 178s Get:11 http://ftpmaster.internal/ubuntu resolute/universe arm64 libamdhip64-5 arm64 5.7.1-6 [9707 kB] 178s Get:12 http://ftpmaster.internal/ubuntu resolute/main arm64 libblas3 arm64 3.12.1-6build1 [186 kB] 178s Get:13 http://ftpmaster.internal/ubuntu resolute/main arm64 libfontconfig1 arm64 2.15.0-2.3ubuntu1 [144 kB] 178s Get:14 http://ftpmaster.internal/ubuntu resolute/main arm64 libpixman-1-0 arm64 0.44.0-3 [197 kB] 178s Get:15 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-render0 arm64 1.17.0-2build1 [18.1 kB] 178s Get:16 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-shm0 arm64 1.17.0-2build1 [6234 B] 178s Get:17 http://ftpmaster.internal/ubuntu resolute/main arm64 libxrender1 arm64 1:0.9.12-1 [19.5 kB] 178s Get:18 http://ftpmaster.internal/ubuntu resolute/main arm64 libcairo2 arm64 1.18.4-1build1 [592 kB] 179s Get:19 http://ftpmaster.internal/ubuntu resolute/main arm64 libdeflate0 arm64 1.23-2 [46.4 kB] 179s Get:20 http://ftpmaster.internal/ubuntu resolute/universe arm64 libdouble-conversion3 arm64 3.3.1-1build1 [40.6 kB] 179s Get:21 http://ftpmaster.internal/ubuntu resolute/main arm64 libevent-core-2.1-7t64 arm64 2.1.12-stable-10build1 [97.5 kB] 179s Get:22 http://ftpmaster.internal/ubuntu resolute/main arm64 libevent-pthreads-2.1-7t64 arm64 2.1.12-stable-10build1 [8272 B] 179s Get:23 http://ftpmaster.internal/ubuntu resolute/main arm64 librdmacm1t64 arm64 56.1-1ubuntu1 [71.4 kB] 179s Get:24 http://ftpmaster.internal/ubuntu resolute/universe arm64 libfabric1 arm64 2.1.0-1.1 [622 kB] 179s Get:25 http://ftpmaster.internal/ubuntu resolute/main arm64 libgomp1 arm64 15.2.0-5ubuntu1 [148 kB] 179s Get:26 http://ftpmaster.internal/ubuntu resolute/main arm64 libfftw3-double3 arm64 3.3.10-2fakesync1build2 [399 kB] 179s Get:27 http://ftpmaster.internal/ubuntu resolute/main arm64 libx11-xcb1 arm64 2:1.8.12-1build1 [8216 B] 179s Get:28 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-dri3-0 arm64 1.17.0-2build1 [8120 B] 179s Get:29 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-present0 arm64 1.17.0-2build1 [6560 B] 179s Get:30 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-randr0 arm64 1.17.0-2build1 [20.2 kB] 179s Get:31 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-sync1 arm64 1.17.0-2build1 [10.4 kB] 179s Get:32 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-xfixes0 arm64 1.17.0-2build1 [11.4 kB] 179s Get:33 http://ftpmaster.internal/ubuntu resolute/main arm64 libxshmfence1 arm64 1.3.3-1 [5378 B] 179s Get:34 http://ftpmaster.internal/ubuntu resolute/main arm64 mesa-libgallium arm64 25.2.3-1ubuntu1 [12.1 MB] 179s Get:35 http://ftpmaster.internal/ubuntu resolute/main arm64 libgbm1 arm64 25.2.3-1ubuntu1 [34.4 kB] 179s Get:36 http://ftpmaster.internal/ubuntu resolute/main arm64 libgfortran5 arm64 15.2.0-5ubuntu1 [450 kB] 179s Get:37 http://ftpmaster.internal/ubuntu resolute/main arm64 libvulkan1 arm64 1.4.321.0-1 [169 kB] 179s Get:38 http://ftpmaster.internal/ubuntu resolute/main arm64 libgl1-mesa-dri arm64 25.2.3-1ubuntu1 [34.9 kB] 179s Get:39 http://ftpmaster.internal/ubuntu resolute/main arm64 libglvnd0 arm64 1.7.0-1build2 [59.2 kB] 179s Get:40 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-glx0 arm64 1.17.0-2build1 [27.8 kB] 179s Get:41 http://ftpmaster.internal/ubuntu resolute/main arm64 libxxf86vm1 arm64 1:1.1.4-1build4 [9130 B] 179s Get:42 http://ftpmaster.internal/ubuntu resolute/main arm64 libglx-mesa0 arm64 25.2.3-1ubuntu1 [110 kB] 179s Get:43 http://ftpmaster.internal/ubuntu resolute/main arm64 libglx0 arm64 1.7.0-1build2 [34.5 kB] 179s Get:44 http://ftpmaster.internal/ubuntu resolute/main arm64 libgl1 arm64 1.7.0-1build2 [104 kB] 179s Get:45 http://ftpmaster.internal/ubuntu resolute/universe arm64 libgl2ps1.4 arm64 1.4.2+dfsg1-2build1 [40.6 kB] 179s Get:46 http://ftpmaster.internal/ubuntu resolute/universe arm64 libglew2.2 arm64 2.2.0-4build1 [191 kB] 179s Get:47 http://ftpmaster.internal/ubuntu resolute/universe arm64 libsz2 arm64 1.1.3-1 [5254 B] 179s Get:48 http://ftpmaster.internal/ubuntu resolute/universe arm64 libhdf5-310 arm64 1.14.5+repack-3build1 [1331 kB] 179s Get:49 http://ftpmaster.internal/ubuntu resolute/universe arm64 libhdf5-hl-310 arm64 1.14.5+repack-3build1 [59.8 kB] 179s Get:50 http://ftpmaster.internal/ubuntu resolute/universe arm64 libhwloc15 arm64 2.12.2-1 [169 kB] 179s Get:51 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg-turbo8 arm64 2.1.5-4ubuntu2 [165 kB] 179s Get:52 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 179s Get:53 http://ftpmaster.internal/ubuntu resolute/main arm64 libjsoncpp26 arm64 1.9.6-3 [78.7 kB] 179s Get:54 http://ftpmaster.internal/ubuntu resolute/universe arm64 libkim-api2 arm64 2.3.0-1ubuntu1 [565 kB] 179s Get:55 http://ftpmaster.internal/ubuntu resolute/main arm64 liblapack3 arm64 3.12.1-6build1 [2340 kB] 179s Get:56 http://ftpmaster.internal/ubuntu resolute/universe arm64 libnetcdf22 arm64 1:4.9.3-1build1 [555 kB] 179s Get:57 http://ftpmaster.internal/ubuntu resolute/main arm64 libibumad3 arm64 56.1-1ubuntu1 [31.3 kB] 179s Get:58 http://ftpmaster.internal/ubuntu resolute/main arm64 libibmad5 arm64 56.1-1ubuntu1 [44.1 kB] 179s Get:59 http://ftpmaster.internal/ubuntu resolute/universe arm64 libucx0 arm64 1.19.0+ds-1 [1242 kB] 179s Get:60 http://ftpmaster.internal/ubuntu resolute/main arm64 libpciaccess0 arm64 0.18.1-1ubuntu2 [19.4 kB] 179s Get:61 http://ftpmaster.internal/ubuntu resolute/main arm64 libxnvctrl0 arm64 510.47.03-0ubuntu4 [12.4 kB] 179s Get:62 http://ftpmaster.internal/ubuntu resolute/main arm64 ocl-icd-libopencl1 arm64 2.3.3-1 [42.2 kB] 179s Get:63 http://ftpmaster.internal/ubuntu resolute/universe arm64 libhwloc-plugins arm64 2.12.2-1 [16.6 kB] 179s Get:64 http://ftpmaster.internal/ubuntu resolute/universe arm64 libopenmpi40 arm64 5.0.8-8ubuntu1 [3274 kB] 180s Get:65 http://ftpmaster.internal/ubuntu resolute/universe arm64 libpnetcdf6 arm64 1.14.0-2 [971 kB] 180s Get:66 http://ftpmaster.internal/ubuntu resolute/universe arm64 libvoro++1 arm64 0.5+revert-to-0.4.6+dfsg1-1 [101 kB] 180s Get:67 http://ftpmaster.internal/ubuntu resolute/main arm64 libogg0 arm64 1.3.5-3build1 [22.6 kB] 180s Get:68 http://ftpmaster.internal/ubuntu resolute/main arm64 libopengl0 arm64 1.7.0-1build2 [34.7 kB] 180s Get:69 http://ftpmaster.internal/ubuntu resolute/universe arm64 proj-data all 9.6.0-1 [7955 kB] 180s Get:70 http://ftpmaster.internal/ubuntu resolute/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB] 180s Get:71 http://ftpmaster.internal/ubuntu resolute/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB] 180s Get:72 http://ftpmaster.internal/ubuntu resolute/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB] 180s Get:73 http://ftpmaster.internal/ubuntu resolute/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB] 180s Get:74 http://ftpmaster.internal/ubuntu resolute/main arm64 libtiff6 arm64 4.7.0-3ubuntu3 [196 kB] 180s Get:75 http://ftpmaster.internal/ubuntu resolute/universe arm64 libproj25 arm64 9.6.0-1 [1358 kB] 180s Get:76 http://ftpmaster.internal/ubuntu resolute/universe arm64 libtbbbind-2-5 arm64 2022.1.0-1 [14.3 kB] 180s Get:77 http://ftpmaster.internal/ubuntu resolute/universe arm64 libtbbmalloc2 arm64 2022.1.0-1 [39.0 kB] 180s Get:78 http://ftpmaster.internal/ubuntu resolute/universe arm64 libtbb12 arm64 2022.1.0-1 [72.1 kB] 180s Get:79 http://ftpmaster.internal/ubuntu resolute/main arm64 libtcl8.6 arm64 8.6.17+dfsg-1 [1024 kB] 180s Get:80 http://ftpmaster.internal/ubuntu resolute/main arm64 libtheoradec1 arm64 1.2.0~alpha1+dfsg-6 [57.1 kB] 180s Get:81 http://ftpmaster.internal/ubuntu resolute/main arm64 libtheoraenc1 arm64 1.2.0~alpha1+dfsg-6 [107 kB] 180s Get:82 http://ftpmaster.internal/ubuntu resolute/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB] 180s Get:83 http://ftpmaster.internal/ubuntu resolute/main arm64 x11-common all 1:7.7+24ubuntu1 [22.4 kB] 180s Get:84 http://ftpmaster.internal/ubuntu resolute/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B] 180s Get:85 http://ftpmaster.internal/ubuntu resolute/main arm64 libtk8.6 arm64 8.6.17-1 [811 kB] 180s Get:86 http://ftpmaster.internal/ubuntu resolute/universe arm64 libvtk9.3 arm64 9.3.0+dfsg1-4ubuntu2 [24.0 MB] 181s Get:87 http://ftpmaster.internal/ubuntu resolute/universe arm64 liblammps0t64 arm64 20250204+dfsg.1-2 [7457 kB] 181s Get:88 http://ftpmaster.internal/ubuntu resolute/universe arm64 openmpi-common all 5.0.8-8ubuntu1 [108 kB] 181s Get:89 http://ftpmaster.internal/ubuntu resolute/universe arm64 openmpi-bin arm64 5.0.8-8ubuntu1 [209 kB] 181s Get:90 http://ftpmaster.internal/ubuntu resolute/universe arm64 mpi-default-bin arm64 1.18 [2510 B] 181s Get:91 http://ftpmaster.internal/ubuntu resolute/universe arm64 lammps arm64 20250204+dfsg.1-2 [15.3 kB] 182s Fetched 132 MB in 7s (18.1 MB/s) 182s Selecting previously unselected package fonts-dejavu-mono. 182s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83359 files and directories currently installed.) 182s Preparing to unpack .../00-fonts-dejavu-mono_2.37-8_all.deb ... 182s Unpacking fonts-dejavu-mono (2.37-8) ... 182s Selecting previously unselected package fonts-dejavu-core. 182s Preparing to unpack .../01-fonts-dejavu-core_2.37-8_all.deb ... 182s Unpacking fonts-dejavu-core (2.37-8) ... 182s Selecting previously unselected package fontconfig-config. 182s Preparing to unpack .../02-fontconfig-config_2.15.0-2.3ubuntu1_arm64.deb ... 182s Unpacking fontconfig-config (2.15.0-2.3ubuntu1) ... 182s Selecting previously unselected package lammps-data. 182s Preparing to unpack .../03-lammps-data_20250204+dfsg.1-2_all.deb ... 182s Unpacking lammps-data (20250204+dfsg.1-2) ... 183s Selecting previously unselected package libaec0:arm64. 183s Preparing to unpack .../04-libaec0_1.1.3-1_arm64.deb ... 183s Unpacking libaec0:arm64 (1.1.3-1) ... 183s Selecting previously unselected package libllvm17t64:arm64. 183s Preparing to unpack .../05-libllvm17t64_1%3a17.0.6-22build1_arm64.deb ... 183s Unpacking libllvm17t64:arm64 (1:17.0.6-22build1) ... 183s Selecting previously unselected package libamd-comgr2:arm64. 183s Preparing to unpack .../06-libamd-comgr2_6.0+git20231212.4510c28+dfsg-3build3_arm64.deb ... 183s Unpacking libamd-comgr2:arm64 (6.0+git20231212.4510c28+dfsg-3build3) ... 184s Selecting previously unselected package libdrm-amdgpu1:arm64. 184s Preparing to unpack .../07-libdrm-amdgpu1_2.4.125-1_arm64.deb ... 184s Unpacking libdrm-amdgpu1:arm64 (2.4.125-1) ... 184s Selecting previously unselected package libhsakmt1:arm64. 184s Preparing to unpack .../08-libhsakmt1_6.2.4+ds-1_arm64.deb ... 184s Unpacking libhsakmt1:arm64 (6.2.4+ds-1) ... 184s Selecting previously unselected package libhsa-runtime64-1:arm64. 184s Preparing to unpack .../09-libhsa-runtime64-1_6.1.2-3_arm64.deb ... 184s Unpacking libhsa-runtime64-1:arm64 (6.1.2-3) ... 184s Selecting previously unselected package libamdhip64-5:arm64. 184s Preparing to unpack .../10-libamdhip64-5_5.7.1-6_arm64.deb ... 184s Unpacking libamdhip64-5:arm64 (5.7.1-6) ... 184s Selecting previously unselected package libblas3:arm64. 184s Preparing to unpack .../11-libblas3_3.12.1-6build1_arm64.deb ... 184s Unpacking libblas3:arm64 (3.12.1-6build1) ... 184s Selecting previously unselected package libfontconfig1:arm64. 184s Preparing to unpack .../12-libfontconfig1_2.15.0-2.3ubuntu1_arm64.deb ... 184s Unpacking libfontconfig1:arm64 (2.15.0-2.3ubuntu1) ... 184s Selecting previously unselected package libpixman-1-0:arm64. 184s Preparing to unpack .../13-libpixman-1-0_0.44.0-3_arm64.deb ... 184s Unpacking libpixman-1-0:arm64 (0.44.0-3) ... 184s Selecting previously unselected package libxcb-render0:arm64. 184s Preparing to unpack .../14-libxcb-render0_1.17.0-2build1_arm64.deb ... 184s Unpacking libxcb-render0:arm64 (1.17.0-2build1) ... 184s Selecting previously unselected package libxcb-shm0:arm64. 184s Preparing to unpack .../15-libxcb-shm0_1.17.0-2build1_arm64.deb ... 184s Unpacking libxcb-shm0:arm64 (1.17.0-2build1) ... 184s Selecting previously unselected package libxrender1:arm64. 184s Preparing to unpack .../16-libxrender1_1%3a0.9.12-1_arm64.deb ... 184s Unpacking libxrender1:arm64 (1:0.9.12-1) ... 184s Selecting previously unselected package libcairo2:arm64. 184s Preparing to unpack .../17-libcairo2_1.18.4-1build1_arm64.deb ... 184s Unpacking libcairo2:arm64 (1.18.4-1build1) ... 184s Selecting previously unselected package libdeflate0:arm64. 184s Preparing to unpack .../18-libdeflate0_1.23-2_arm64.deb ... 184s Unpacking libdeflate0:arm64 (1.23-2) ... 184s Selecting previously unselected package libdouble-conversion3:arm64. 184s Preparing to unpack .../19-libdouble-conversion3_3.3.1-1build1_arm64.deb ... 184s Unpacking libdouble-conversion3:arm64 (3.3.1-1build1) ... 184s Selecting previously unselected package libevent-core-2.1-7t64:arm64. 184s Preparing to unpack .../20-libevent-core-2.1-7t64_2.1.12-stable-10build1_arm64.deb ... 184s Unpacking libevent-core-2.1-7t64:arm64 (2.1.12-stable-10build1) ... 184s Selecting previously unselected package libevent-pthreads-2.1-7t64:arm64. 184s Preparing to unpack .../21-libevent-pthreads-2.1-7t64_2.1.12-stable-10build1_arm64.deb ... 184s Unpacking libevent-pthreads-2.1-7t64:arm64 (2.1.12-stable-10build1) ... 184s Selecting previously unselected package librdmacm1t64:arm64. 184s Preparing to unpack .../22-librdmacm1t64_56.1-1ubuntu1_arm64.deb ... 184s Unpacking librdmacm1t64:arm64 (56.1-1ubuntu1) ... 184s Selecting previously unselected package libfabric1:arm64. 184s Preparing to unpack .../23-libfabric1_2.1.0-1.1_arm64.deb ... 184s Unpacking libfabric1:arm64 (2.1.0-1.1) ... 184s Selecting previously unselected package libgomp1:arm64. 184s Preparing to unpack .../24-libgomp1_15.2.0-5ubuntu1_arm64.deb ... 184s Unpacking libgomp1:arm64 (15.2.0-5ubuntu1) ... 184s Selecting previously unselected package libfftw3-double3:arm64. 184s Preparing to unpack .../25-libfftw3-double3_3.3.10-2fakesync1build2_arm64.deb ... 184s Unpacking libfftw3-double3:arm64 (3.3.10-2fakesync1build2) ... 184s Selecting previously unselected package libx11-xcb1:arm64. 184s Preparing to unpack .../26-libx11-xcb1_2%3a1.8.12-1build1_arm64.deb ... 184s Unpacking libx11-xcb1:arm64 (2:1.8.12-1build1) ... 185s Selecting previously unselected package libxcb-dri3-0:arm64. 185s Preparing to unpack .../27-libxcb-dri3-0_1.17.0-2build1_arm64.deb ... 185s Unpacking libxcb-dri3-0:arm64 (1.17.0-2build1) ... 185s Selecting previously unselected package libxcb-present0:arm64. 185s Preparing to unpack .../28-libxcb-present0_1.17.0-2build1_arm64.deb ... 185s Unpacking libxcb-present0:arm64 (1.17.0-2build1) ... 185s Selecting previously unselected package libxcb-randr0:arm64. 185s Preparing to unpack .../29-libxcb-randr0_1.17.0-2build1_arm64.deb ... 185s Unpacking libxcb-randr0:arm64 (1.17.0-2build1) ... 185s Selecting previously unselected package libxcb-sync1:arm64. 185s Preparing to unpack .../30-libxcb-sync1_1.17.0-2build1_arm64.deb ... 185s Unpacking libxcb-sync1:arm64 (1.17.0-2build1) ... 185s Selecting previously unselected package libxcb-xfixes0:arm64. 185s Preparing to unpack .../31-libxcb-xfixes0_1.17.0-2build1_arm64.deb ... 185s Unpacking libxcb-xfixes0:arm64 (1.17.0-2build1) ... 185s Selecting previously unselected package libxshmfence1:arm64. 185s Preparing to unpack .../32-libxshmfence1_1.3.3-1_arm64.deb ... 185s Unpacking libxshmfence1:arm64 (1.3.3-1) ... 185s Selecting previously unselected package mesa-libgallium:arm64. 185s Preparing to unpack .../33-mesa-libgallium_25.2.3-1ubuntu1_arm64.deb ... 185s Unpacking mesa-libgallium:arm64 (25.2.3-1ubuntu1) ... 185s Selecting previously unselected package libgbm1:arm64. 185s Preparing to unpack .../34-libgbm1_25.2.3-1ubuntu1_arm64.deb ... 185s Unpacking libgbm1:arm64 (25.2.3-1ubuntu1) ... 185s Selecting previously unselected package libgfortran5:arm64. 185s Preparing to unpack .../35-libgfortran5_15.2.0-5ubuntu1_arm64.deb ... 185s Unpacking libgfortran5:arm64 (15.2.0-5ubuntu1) ... 185s Selecting previously unselected package libvulkan1:arm64. 185s Preparing to unpack .../36-libvulkan1_1.4.321.0-1_arm64.deb ... 185s Unpacking libvulkan1:arm64 (1.4.321.0-1) ... 185s Selecting previously unselected package libgl1-mesa-dri:arm64. 185s Preparing to unpack .../37-libgl1-mesa-dri_25.2.3-1ubuntu1_arm64.deb ... 185s Unpacking libgl1-mesa-dri:arm64 (25.2.3-1ubuntu1) ... 185s Selecting previously unselected package libglvnd0:arm64. 185s Preparing to unpack .../38-libglvnd0_1.7.0-1build2_arm64.deb ... 185s Unpacking libglvnd0:arm64 (1.7.0-1build2) ... 185s Selecting previously unselected package libxcb-glx0:arm64. 185s Preparing to unpack .../39-libxcb-glx0_1.17.0-2build1_arm64.deb ... 185s Unpacking libxcb-glx0:arm64 (1.17.0-2build1) ... 185s Selecting previously unselected package libxxf86vm1:arm64. 185s Preparing to unpack .../40-libxxf86vm1_1%3a1.1.4-1build4_arm64.deb ... 185s Unpacking libxxf86vm1:arm64 (1:1.1.4-1build4) ... 185s Selecting previously unselected package libglx-mesa0:arm64. 185s Preparing to unpack .../41-libglx-mesa0_25.2.3-1ubuntu1_arm64.deb ... 185s Unpacking libglx-mesa0:arm64 (25.2.3-1ubuntu1) ... 185s Selecting previously unselected package libglx0:arm64. 185s Preparing to unpack .../42-libglx0_1.7.0-1build2_arm64.deb ... 185s Unpacking libglx0:arm64 (1.7.0-1build2) ... 185s Selecting previously unselected package libgl1:arm64. 185s Preparing to unpack .../43-libgl1_1.7.0-1build2_arm64.deb ... 185s Unpacking libgl1:arm64 (1.7.0-1build2) ... 185s Selecting previously unselected package libgl2ps1.4. 185s Preparing to unpack .../44-libgl2ps1.4_1.4.2+dfsg1-2build1_arm64.deb ... 185s Unpacking libgl2ps1.4 (1.4.2+dfsg1-2build1) ... 185s Selecting previously unselected package libglew2.2:arm64. 185s Preparing to unpack .../45-libglew2.2_2.2.0-4build1_arm64.deb ... 185s Unpacking libglew2.2:arm64 (2.2.0-4build1) ... 185s Selecting previously unselected package libsz2:arm64. 185s Preparing to unpack .../46-libsz2_1.1.3-1_arm64.deb ... 185s Unpacking libsz2:arm64 (1.1.3-1) ... 185s Selecting previously unselected package libhdf5-310:arm64. 185s Preparing to unpack .../47-libhdf5-310_1.14.5+repack-3build1_arm64.deb ... 185s Unpacking libhdf5-310:arm64 (1.14.5+repack-3build1) ... 185s Selecting previously unselected package libhdf5-hl-310:arm64. 185s Preparing to unpack .../48-libhdf5-hl-310_1.14.5+repack-3build1_arm64.deb ... 185s Unpacking libhdf5-hl-310:arm64 (1.14.5+repack-3build1) ... 185s Selecting previously unselected package libhwloc15:arm64. 186s Preparing to unpack .../49-libhwloc15_2.12.2-1_arm64.deb ... 186s Unpacking libhwloc15:arm64 (2.12.2-1) ... 186s Selecting previously unselected package libjpeg-turbo8:arm64. 186s Preparing to unpack .../50-libjpeg-turbo8_2.1.5-4ubuntu2_arm64.deb ... 186s Unpacking libjpeg-turbo8:arm64 (2.1.5-4ubuntu2) ... 186s Selecting previously unselected package libjpeg8:arm64. 186s Preparing to unpack .../51-libjpeg8_8c-2ubuntu11_arm64.deb ... 186s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 186s Selecting previously unselected package libjsoncpp26:arm64. 186s Preparing to unpack .../52-libjsoncpp26_1.9.6-3_arm64.deb ... 186s Unpacking libjsoncpp26:arm64 (1.9.6-3) ... 186s Selecting previously unselected package libkim-api2:arm64. 186s Preparing to unpack .../53-libkim-api2_2.3.0-1ubuntu1_arm64.deb ... 186s Unpacking libkim-api2:arm64 (2.3.0-1ubuntu1) ... 186s Selecting previously unselected package liblapack3:arm64. 186s Preparing to unpack .../54-liblapack3_3.12.1-6build1_arm64.deb ... 186s Unpacking liblapack3:arm64 (3.12.1-6build1) ... 186s Selecting previously unselected package libnetcdf22:arm64. 186s Preparing to unpack .../55-libnetcdf22_1%3a4.9.3-1build1_arm64.deb ... 186s Unpacking libnetcdf22:arm64 (1:4.9.3-1build1) ... 186s Selecting previously unselected package libibumad3:arm64. 186s Preparing to unpack .../56-libibumad3_56.1-1ubuntu1_arm64.deb ... 186s Unpacking libibumad3:arm64 (56.1-1ubuntu1) ... 186s Selecting previously unselected package libibmad5:arm64. 186s Preparing to unpack .../57-libibmad5_56.1-1ubuntu1_arm64.deb ... 186s Unpacking libibmad5:arm64 (56.1-1ubuntu1) ... 186s Selecting previously unselected package libucx0:arm64. 186s Preparing to unpack .../58-libucx0_1.19.0+ds-1_arm64.deb ... 186s Unpacking libucx0:arm64 (1.19.0+ds-1) ... 186s Selecting previously unselected package libpciaccess0:arm64. 186s Preparing to unpack .../59-libpciaccess0_0.18.1-1ubuntu2_arm64.deb ... 186s Unpacking libpciaccess0:arm64 (0.18.1-1ubuntu2) ... 186s Selecting previously unselected package libxnvctrl0:arm64. 186s Preparing to unpack .../60-libxnvctrl0_510.47.03-0ubuntu4_arm64.deb ... 186s Unpacking libxnvctrl0:arm64 (510.47.03-0ubuntu4) ... 186s Selecting previously unselected package ocl-icd-libopencl1:arm64. 186s Preparing to unpack .../61-ocl-icd-libopencl1_2.3.3-1_arm64.deb ... 186s Unpacking ocl-icd-libopencl1:arm64 (2.3.3-1) ... 186s Selecting previously unselected package libhwloc-plugins:arm64. 186s Preparing to unpack .../62-libhwloc-plugins_2.12.2-1_arm64.deb ... 186s Unpacking libhwloc-plugins:arm64 (2.12.2-1) ... 186s Selecting previously unselected package libopenmpi40:arm64. 186s Preparing to unpack .../63-libopenmpi40_5.0.8-8ubuntu1_arm64.deb ... 186s Unpacking libopenmpi40:arm64 (5.0.8-8ubuntu1) ... 186s Selecting previously unselected package libpnetcdf6:arm64. 186s Preparing to unpack .../64-libpnetcdf6_1.14.0-2_arm64.deb ... 186s Unpacking libpnetcdf6:arm64 (1.14.0-2) ... 186s Selecting previously unselected package libvoro++1. 186s Preparing to unpack .../65-libvoro++1_0.5+revert-to-0.4.6+dfsg1-1_arm64.deb ... 186s Unpacking libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ... 186s Selecting previously unselected package libogg0:arm64. 186s Preparing to unpack .../66-libogg0_1.3.5-3build1_arm64.deb ... 186s Unpacking libogg0:arm64 (1.3.5-3build1) ... 186s Selecting previously unselected package libopengl0:arm64. 186s Preparing to unpack .../67-libopengl0_1.7.0-1build2_arm64.deb ... 186s Unpacking libopengl0:arm64 (1.7.0-1build2) ... 186s Selecting previously unselected package proj-data. 186s Preparing to unpack .../68-proj-data_9.6.0-1_all.deb ... 186s Unpacking proj-data (9.6.0-1) ... 187s Selecting previously unselected package libjbig0:arm64. 187s Preparing to unpack .../69-libjbig0_2.1-6.1ubuntu2_arm64.deb ... 187s Unpacking libjbig0:arm64 (2.1-6.1ubuntu2) ... 187s Selecting previously unselected package liblerc4:arm64. 187s Preparing to unpack .../70-liblerc4_4.0.0+ds-5ubuntu1_arm64.deb ... 187s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 187s Selecting previously unselected package libsharpyuv0:arm64. 187s Preparing to unpack .../71-libsharpyuv0_1.5.0-0.1_arm64.deb ... 187s Unpacking libsharpyuv0:arm64 (1.5.0-0.1) ... 187s Selecting previously unselected package libwebp7:arm64. 187s Preparing to unpack .../72-libwebp7_1.5.0-0.1_arm64.deb ... 187s Unpacking libwebp7:arm64 (1.5.0-0.1) ... 187s Selecting previously unselected package libtiff6:arm64. 187s Preparing to unpack .../73-libtiff6_4.7.0-3ubuntu3_arm64.deb ... 187s Unpacking libtiff6:arm64 (4.7.0-3ubuntu3) ... 187s Selecting previously unselected package libproj25:arm64. 187s Preparing to unpack .../74-libproj25_9.6.0-1_arm64.deb ... 187s Unpacking libproj25:arm64 (9.6.0-1) ... 187s Selecting previously unselected package libtbbbind-2-5:arm64. 187s Preparing to unpack .../75-libtbbbind-2-5_2022.1.0-1_arm64.deb ... 187s Unpacking libtbbbind-2-5:arm64 (2022.1.0-1) ... 187s Selecting previously unselected package libtbbmalloc2:arm64. 187s Preparing to unpack .../76-libtbbmalloc2_2022.1.0-1_arm64.deb ... 187s Unpacking libtbbmalloc2:arm64 (2022.1.0-1) ... 187s Selecting previously unselected package libtbb12:arm64. 187s Preparing to unpack .../77-libtbb12_2022.1.0-1_arm64.deb ... 187s Unpacking libtbb12:arm64 (2022.1.0-1) ... 187s Selecting previously unselected package libtcl8.6:arm64. 187s Preparing to unpack .../78-libtcl8.6_8.6.17+dfsg-1_arm64.deb ... 187s Unpacking libtcl8.6:arm64 (8.6.17+dfsg-1) ... 187s Selecting previously unselected package libtheoradec1:arm64. 187s Preparing to unpack .../79-libtheoradec1_1.2.0~alpha1+dfsg-6_arm64.deb ... 187s Unpacking libtheoradec1:arm64 (1.2.0~alpha1+dfsg-6) ... 187s Selecting previously unselected package libtheoraenc1:arm64. 187s Preparing to unpack .../80-libtheoraenc1_1.2.0~alpha1+dfsg-6_arm64.deb ... 187s Unpacking libtheoraenc1:arm64 (1.2.0~alpha1+dfsg-6) ... 187s Selecting previously unselected package libxft2:arm64. 187s Preparing to unpack .../81-libxft2_2.3.6-1build1_arm64.deb ... 187s Unpacking libxft2:arm64 (2.3.6-1build1) ... 187s Selecting previously unselected package x11-common. 187s Preparing to unpack .../82-x11-common_1%3a7.7+24ubuntu1_all.deb ... 187s Unpacking x11-common (1:7.7+24ubuntu1) ... 187s Selecting previously unselected package libxss1:arm64. 187s Preparing to unpack .../83-libxss1_1%3a1.2.3-1build3_arm64.deb ... 187s Unpacking libxss1:arm64 (1:1.2.3-1build3) ... 187s Selecting previously unselected package libtk8.6:arm64. 187s Preparing to unpack .../84-libtk8.6_8.6.17-1_arm64.deb ... 187s Unpacking libtk8.6:arm64 (8.6.17-1) ... 187s Selecting previously unselected package libvtk9.3:arm64. 187s Preparing to unpack .../85-libvtk9.3_9.3.0+dfsg1-4ubuntu2_arm64.deb ... 187s Unpacking libvtk9.3:arm64 (9.3.0+dfsg1-4ubuntu2) ... 188s Selecting previously unselected package liblammps0t64:arm64. 188s Preparing to unpack .../86-liblammps0t64_20250204+dfsg.1-2_arm64.deb ... 188s Unpacking liblammps0t64:arm64 (20250204+dfsg.1-2) ... 188s Selecting previously unselected package openmpi-common. 188s Preparing to unpack .../87-openmpi-common_5.0.8-8ubuntu1_all.deb ... 188s Unpacking openmpi-common (5.0.8-8ubuntu1) ... 188s Selecting previously unselected package openmpi-bin. 188s Preparing to unpack .../88-openmpi-bin_5.0.8-8ubuntu1_arm64.deb ... 188s Unpacking openmpi-bin (5.0.8-8ubuntu1) ... 188s Selecting previously unselected package mpi-default-bin. 188s Preparing to unpack .../89-mpi-default-bin_1.18_arm64.deb ... 188s Unpacking mpi-default-bin (1.18) ... 188s Selecting previously unselected package lammps. 188s Preparing to unpack .../90-lammps_20250204+dfsg.1-2_arm64.deb ... 188s Unpacking lammps (20250204+dfsg.1-2) ... 189s Setting up libxcb-dri3-0:arm64 (1.17.0-2build1) ... 189s Setting up libtbbmalloc2:arm64 (2022.1.0-1) ... 189s Setting up libpixman-1-0:arm64 (0.44.0-3) ... 189s Setting up libsharpyuv0:arm64 (1.5.0-0.1) ... 189s Setting up libx11-xcb1:arm64 (2:1.8.12-1build1) ... 189s Setting up libpciaccess0:arm64 (0.18.1-1ubuntu2) ... 189s Setting up libdouble-conversion3:arm64 (3.3.1-1build1) ... 189s Setting up libxcb-xfixes0:arm64 (1.17.0-2build1) ... 189s Setting up libogg0:arm64 (1.3.5-3build1) ... 189s Setting up liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 189s Setting up proj-data (9.6.0-1) ... 189s Setting up libxrender1:arm64 (1:0.9.12-1) ... 189s Setting up lammps-data (20250204+dfsg.1-2) ... 189s Setting up libxcb-render0:arm64 (1.17.0-2build1) ... 189s Setting up libglvnd0:arm64 (1.7.0-1build2) ... 189s Setting up libxcb-glx0:arm64 (1.17.0-2build1) ... 189s Setting up x11-common (1:7.7+24ubuntu1) ... 189s Setting up libibumad3:arm64 (56.1-1ubuntu1) ... 189s Setting up libdeflate0:arm64 (1.23-2) ... 189s Setting up libxcb-shm0:arm64 (1.17.0-2build1) ... 189s Setting up libibmad5:arm64 (56.1-1ubuntu1) ... 189s Setting up libgomp1:arm64 (15.2.0-5ubuntu1) ... 189s Setting up libjbig0:arm64 (2.1-6.1ubuntu2) ... 189s Setting up libaec0:arm64 (1.1.3-1) ... 189s Setting up libopengl0:arm64 (1.7.0-1build2) ... 189s Setting up libxxf86vm1:arm64 (1:1.1.4-1build4) ... 189s Setting up libxnvctrl0:arm64 (510.47.03-0ubuntu4) ... 189s Setting up libxcb-present0:arm64 (1.17.0-2build1) ... 189s Setting up libtheoraenc1:arm64 (1.2.0~alpha1+dfsg-6) ... 189s Setting up libblas3:arm64 (3.12.1-6build1) ... 189s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 189s Setting up libllvm17t64:arm64 (1:17.0.6-22build1) ... 189s Setting up libxcb-sync1:arm64 (1.17.0-2build1) ... 189s Setting up libjsoncpp26:arm64 (1.9.6-3) ... 189s Setting up fonts-dejavu-mono (2.37-8) ... 189s Setting up libhwloc15:arm64 (2.12.2-1) ... 189s Setting up libtcl8.6:arm64 (8.6.17+dfsg-1) ... 189s Setting up fonts-dejavu-core (2.37-8) ... 189s Setting up libjpeg-turbo8:arm64 (2.1.5-4ubuntu2) ... 189s Setting up libfftw3-double3:arm64 (3.3.10-2fakesync1build2) ... 189s Setting up libgfortran5:arm64 (15.2.0-5ubuntu1) ... 189s Setting up libvulkan1:arm64 (1.4.321.0-1) ... 189s Setting up libwebp7:arm64 (1.5.0-0.1) ... 189s Setting up ocl-icd-libopencl1:arm64 (2.3.3-1) ... 189s Setting up libxshmfence1:arm64 (1.3.3-1) ... 189s Setting up libxcb-randr0:arm64 (1.17.0-2build1) ... 189s Setting up openmpi-common (5.0.8-8ubuntu1) ... 189s Setting up librdmacm1t64:arm64 (56.1-1ubuntu1) ... 189s Setting up libevent-core-2.1-7t64:arm64 (2.1.12-stable-10build1) ... 189s Setting up libamd-comgr2:arm64 (6.0+git20231212.4510c28+dfsg-3build3) ... 189s Setting up libxss1:arm64 (1:1.2.3-1build3) ... 189s Setting up libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ... 189s Setting up libsz2:arm64 (1.1.3-1) ... 189s Setting up libdrm-amdgpu1:arm64 (2.4.125-1) ... 189s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 189s Setting up libfabric1:arm64 (2.1.0-1.1) ... 189s Setting up mesa-libgallium:arm64 (25.2.3-1ubuntu1) ... 189s Setting up liblapack3:arm64 (3.12.1-6build1) ... 189s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 189s Setting up libgbm1:arm64 (25.2.3-1ubuntu1) ... 189s Setting up libevent-pthreads-2.1-7t64:arm64 (2.1.12-stable-10build1) ... 189s Setting up fontconfig-config (2.15.0-2.3ubuntu1) ... 189s Setting up libgl1-mesa-dri:arm64 (25.2.3-1ubuntu1) ... 189s Setting up libkim-api2:arm64 (2.3.0-1ubuntu1) ... 189s Setting up libhwloc-plugins:arm64 (2.12.2-1) ... 189s Setting up libtbbbind-2-5:arm64 (2022.1.0-1) ... 189s Setting up libhdf5-310:arm64 (1.14.5+repack-3build1) ... 189s Setting up libtiff6:arm64 (4.7.0-3ubuntu3) ... 189s Setting up libfontconfig1:arm64 (2.15.0-2.3ubuntu1) ... 189s Setting up libhsakmt1:arm64 (6.2.4+ds-1) ... 189s Setting up libhdf5-hl-310:arm64 (1.14.5+repack-3build1) ... 189s Setting up libxft2:arm64 (2.3.6-1build1) ... 189s Setting up libglx-mesa0:arm64 (25.2.3-1ubuntu1) ... 189s Setting up libglx0:arm64 (1.7.0-1build2) ... 189s Setting up libproj25:arm64 (9.6.0-1) ... 189s Setting up libtk8.6:arm64 (8.6.17-1) ... 189s Setting up libnetcdf22:arm64 (1:4.9.3-1build1) ... 189s Setting up libtbb12:arm64 (2022.1.0-1) ... 189s Setting up libcairo2:arm64 (1.18.4-1build1) ... 189s Setting up libgl1:arm64 (1.7.0-1build2) ... 189s Setting up libtheoradec1:arm64 (1.2.0~alpha1+dfsg-6) ... 189s Setting up libglew2.2:arm64 (2.2.0-4build1) ... 189s Setting up libhsa-runtime64-1:arm64 (6.1.2-3) ... 189s Setting up libgl2ps1.4 (1.4.2+dfsg1-2build1) ... 189s Setting up libamdhip64-5:arm64 (5.7.1-6) ... 189s Setting up libucx0:arm64 (1.19.0+ds-1) ... 189s Setting up libopenmpi40:arm64 (5.0.8-8ubuntu1) ... 189s Setting up libpnetcdf6:arm64 (1.14.0-2) ... 189s Setting up libvtk9.3:arm64 (9.3.0+dfsg1-4ubuntu2) ... 189s Setting up openmpi-bin (5.0.8-8ubuntu1) ... 189s update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode 189s update-alternatives: warning: skip creation of /usr/share/man/man1/mpiexec.1.gz because associated file /usr/share/man/man1/mpiexec.openmpi.1.gz (of link group mpirun) doesn't exist 189s update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode 189s Setting up mpi-default-bin (1.18) ... 189s Setting up liblammps0t64:arm64 (20250204+dfsg.1-2) ... 189s Setting up lammps (20250204+dfsg.1-2) ... 189s Processing triggers for man-db (2.13.1-1) ... 190s Processing triggers for libc-bin (2.42-0ubuntu3) ... 192s autopkgtest [18:41:14]: test crack: [----------------------- 192s LAMMPS (4 Feb 2025) 192s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 192s using 1 OpenMP thread(s) per MPI task 192s Lattice spacing in x,y,z = 1.1142771 1.9299846 1.1142771 192s Created orthogonal box = (0 0 -0.27856928) to (111.42771 77.199383 0.27856928) 192s 2 by 1 by 1 MPI processor grid 192s Created 8141 atoms 192s using lattice units in orthogonal box = (-0.011142771 -0.0077199383 -0.27856928) to (111.43885 77.207103 0.27856928) 192s create_atoms CPU = 0.001 seconds 192s 302 atoms in group lower 192s 302 atoms in group upper 192s 604 atoms in group boundary 192s 7537 atoms in group mobile 192s 841 atoms in group leftupper 192s 841 atoms in group leftlower 192s Setting atom values ... 192s 841 settings made for type 192s Setting atom values ... 192s 841 settings made for type 192s Setting atom values ... 192s 302 settings made for type 192s Setting atom values ... 192s 302 settings made for type 192s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:551) 192s Generated 0 of 10 mixed pair_coeff terms from geometric mixing rule 192s Neighbor list info ... 192s update: every = 1 steps, delay = 5 steps, check = yes 192s max neighbors/atom: 2000, page size: 100000 192s master list distance cutoff = 2.8 192s ghost atom cutoff = 2.8 192s binsize = 1.4, bins = 80 56 1 192s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 192s (1) pair lj/cut, perpetual 192s attributes: half, newton on 192s pair build: half/bin/atomonly/newton 192s stencil: half/bin/2d 192s bin: standard 192s Setting up Verlet run ... 192s Unit style : lj 192s Current step : 0 192s Time step : 0.003 192s Per MPI rank memory allocation (min/avg/max) = 3.097 | 3.097 | 3.097 Mbytes 192s Step Temp E_pair E_mol TotEng Press Volume 192s 0 0.065993465 -3.2595015 0 -3.1984123 -0.035939913 8605.5917 192s 200 0.060035253 -3.2531886 0 -3.1976149 -0.22757684 8638.5331 193s 400 0.06054278 -3.2510706 0 -3.1950271 -0.42811733 8677.8288 193s 600 0.060576995 -3.246816 0 -3.1907408 -0.60017647 8717.6131 193s 800 0.060802753 -3.2413477 0 -3.1850635 -0.74499308 8756.4512 193s 1000 0.061812114 -3.2349942 0 -3.1777756 -0.87130079 8796.9575 193s 1200 0.06317147 -3.2277552 0 -3.1692783 -0.98010628 8823.1488 193s 1400 0.065125405 -3.2198031 0 -3.1595175 -1.0690179 8858.8358 193s 1600 0.06725411 -3.2111272 0 -3.148871 -1.1440993 8892.6607 193s 1800 0.069389572 -3.2019689 0 -3.137736 -1.199078 8933.7591 193s 2000 0.071276448 -3.1921621 0 -3.1261826 -1.239553 8969.0463 194s 2200 0.073243486 -3.1818809 0 -3.1140805 -1.264839 8997.6559 194s 2400 0.075063494 -3.1711703 0 -3.1016851 -1.2772278 9038.4932 194s 2600 0.076789207 -3.1600658 0 -3.0889832 -1.2754953 9073.4997 194s 2800 0.07875979 -3.1487143 0 -3.0758075 -1.2637926 9106.2245 194s 3000 0.080591853 -3.1372361 0 -3.0626334 -1.2388824 9142.7862 194s 3200 0.08227693 -3.125423 0 -3.0492605 -1.2055283 9169.4322 194s 3400 0.084289444 -3.1136554 0 -3.03563 -1.1672422 9204.8205 194s 3600 0.086720297 -3.1021183 0 -3.0218427 -1.126381 9233.2656 194s 3800 0.089264018 -3.0909262 0 -3.0082959 -1.0899774 9265.4143 195s 4000 0.091377688 -3.0795096 0 -2.9949227 -1.0580229 9297.6799 195s 4200 0.092665135 -3.0678736 0 -2.9820949 -1.0390124 9331.6135 195s 4400 0.09055434 -3.0560482 0 -2.9722234 -1.0323741 9362.2075 195s 4600 0.088763719 -3.0446018 0 -2.9624346 -1.027693 9391.6949 195s 4800 0.089467982 -3.0337452 0 -2.950926 -1.0232092 9427.4155 195s 5000 0.089910902 -3.0237571 0 -2.9405279 -1.0174796 9452.031 195s Loop time of 2.91756 on 2 procs for 5000 steps with 8141 atoms 195s 195s Performance: 444206.834 tau/day, 1713.761 timesteps/s, 13.952 Matom-step/s 195s 98.2% CPU use with 2 MPI tasks x 1 OpenMP threads 195s 195s MPI task timing breakdown: 195s Section | min time | avg time | max time |%varavg| %total 195s --------------------------------------------------------------- 195s Pair | 2.1882 | 2.2272 | 2.2663 | 2.6 | 76.34 195s Neigh | 0.11262 | 0.11419 | 0.11576 | 0.5 | 3.91 195s Comm | 0.21916 | 0.25755 | 0.29593 | 7.6 | 8.83 195s Output | 0.00091549 | 0.0025335 | 0.0041514 | 3.2 | 0.09 195s Modify | 0.22215 | 0.22725 | 0.23235 | 1.1 | 7.79 195s Other | | 0.08879 | | | 3.04 195s 195s Nlocal: 4070.5 ave 4085 max 4056 min 195s Histogram: 1 0 0 0 0 0 0 0 0 1 195s Nghost: 207 ave 208 max 206 min 195s Histogram: 1 0 0 0 0 0 0 0 0 1 195s Neighs: 35700 ave 35927 max 35473 min 195s Histogram: 1 0 0 0 0 0 0 0 0 1 195s 195s Total # of neighbors = 71400 195s Ave neighs/atom = 8.7704213 195s Neighbor list builds = 106 195s Dangerous builds = 0 195s Total wall time: 0:00:02 195s LAMMPS (4 Feb 2025) 200s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 200s using 1 OpenMP thread(s) per MPI task 200s Lattice spacing in x,y,z = 1.1142771 1.9299846 1.1142771 200s Created orthogonal box = (0 0 -0.27856928) to (111.42771 77.199383 0.27856928) 200s 1 by 1 by 1 MPI processor grid 200s Created 8141 atoms 200s using lattice units in orthogonal box = (-0.011142771 -0.0077199383 -0.27856928) to (111.43885 77.207103 0.27856928) 200s create_atoms CPU = 0.001 seconds 200s 302 atoms in group lower 200s 302 atoms in group upper 200s 604 atoms in group boundary 200s 7537 atoms in group mobile 200s 841 atoms in group leftupper 200s 841 atoms in group leftlower 200s Setting atom values ... 200s 841 settings made for type 200s Setting atom values ... 200s 841 settings made for type 200s Setting atom values ... 200s 302 settings made for type 200s Setting atom values ... 200s 302 settings made for type 200s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:551) 200s Generated 0 of 10 mixed pair_coeff terms from geometric mixing rule 200s Neighbor list info ... 200s update: every = 1 steps, delay = 5 steps, check = yes 200s max neighbors/atom: 2000, page size: 100000 200s master list distance cutoff = 2.8 200s ghost atom cutoff = 2.8 200s binsize = 1.4, bins = 80 56 1 200s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 200s (1) pair lj/cut, perpetual 200s attributes: half, newton on 200s pair build: half/bin/atomonly/newton 200s stencil: half/bin/2d 200s bin: standard 200s Setting up Verlet run ... 200s Unit style : lj 200s Current step : 0 200s Time step : 0.003 200s Per MPI rank memory allocation (min/avg/max) = 3.112 | 3.112 | 3.112 Mbytes 200s Step Temp E_pair E_mol TotEng Press Volume 200s 0 0.065651733 -3.2595015 0 -3.1987287 -0.036239172 8605.5917 200s 200 0.060086376 -3.2531936 0 -3.1975725 -0.23125026 8638.8101 200s 400 0.060533553 -3.2509973 0 -3.1949623 -0.4305406 8679.2464 200s 600 0.06082965 -3.2466949 0 -3.1903858 -0.6028531 8716.7569 200s 800 0.061677224 -3.2413215 0 -3.1842278 -0.7482749 8756.226 200s 1000 0.062383731 -3.2349273 0 -3.1771796 -0.87425132 8793.1116 200s 1200 0.063709246 -3.2276094 0 -3.1686347 -0.98020161 8828.8863 200s 1400 0.065404552 -3.2196608 0 -3.1591168 -1.0695384 8866.4893 200s 1600 0.067579602 -3.2110378 0 -3.1484804 -1.1456387 8900.6772 200s 1800 0.069324241 -3.2018536 0 -3.1376812 -1.2020999 8933.017 200s 2000 0.071014927 -3.1921108 0 -3.1263733 -1.2430105 8963.9853 200s 2200 0.072992881 -3.1818701 0 -3.1143017 -1.2701297 9004.4136 200s 2400 0.075000723 -3.1712313 0 -3.1018043 -1.2830866 9034.9991 200s 2600 0.076843477 -3.1601004 0 -3.0889675 -1.27924 9072.1325 200s 2800 0.078671706 -3.1487747 0 -3.0759495 -1.2659604 9103.9526 200s 3000 0.080713586 -3.1373277 0 -3.0626123 -1.2440673 9134.552 200s 3200 0.08309469 -3.1260242 0 -3.0491047 -1.214547 9169.0003 200s 3400 0.085424766 -3.1146623 0 -3.0355859 -1.1839326 9206.909 200s 3600 0.087396485 -3.1029493 0 -3.0220477 -1.143412 9233.783 200s 3800 0.089007987 -3.090822 0 -3.0084286 -1.1000791 9259.0348 200s 4000 0.089813071 -3.0794078 0 -2.9962692 -1.062847 9281.82 200s 4200 0.08584753 -3.0668559 0 -2.9873882 -1.037972 9308.8113 200s 4400 0.086197517 -3.0559678 0 -2.9761761 -1.028843 9328.9666 201s 4600 0.086766447 -3.0437627 0 -2.9634443 -1.0208785 9361.9925 201s 4800 0.088195149 -3.0328502 0 -2.9512093 -1.0272063 9395.6122 201s 5000 0.089415266 -3.0228825 0 -2.9401122 -1.0215336 9436.1637 201s Loop time of 5.26707 on 1 procs for 5000 steps with 8141 atoms 201s 201s Performance: 246057.243 tau/day, 949.295 timesteps/s, 7.728 Matom-step/s 201s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads 201s 201s MPI task timing breakdown: 201s Section | min time | avg time | max time |%varavg| %total 201s --------------------------------------------------------------- 201s Pair | 4.4685 | 4.4685 | 4.4685 | 0.0 | 84.84 201s Neigh | 0.21131 | 0.21131 | 0.21131 | 0.0 | 4.01 201s Comm | 0.0043156 | 0.0043156 | 0.0043156 | 0.0 | 0.08 201s Output | 0.0013281 | 0.0013281 | 0.0013281 | 0.0 | 0.03 201s Modify | 0.45993 | 0.45993 | 0.45993 | 0.0 | 8.73 201s Other | | 0.1217 | | | 2.31 201s 201s Nlocal: 8141 ave 8141 max 8141 min 201s Histogram: 1 0 0 0 0 0 0 0 0 0 201s Nghost: 0 ave 0 max 0 min 201s Histogram: 1 0 0 0 0 0 0 0 0 0 201s Neighs: 71389 ave 71389 max 71389 min 201s Histogram: 1 0 0 0 0 0 0 0 0 0 201s 201s Total # of neighbors = 71389 201s Ave neighs/atom = 8.7690701 201s Neighbor list builds = 100 201s Dangerous builds = 0 201s Total wall time: 0:00:05 201s run: OK 201s autopkgtest [18:41:23]: test crack: -----------------------] 201s autopkgtest [18:41:23]: test crack: - - - - - - - - - - results - - - - - - - - - - 201s crack PASS 202s autopkgtest [18:41:24]: test dipole: preparing testbed 202s Reading package lists... 202s Building dependency tree... 202s Reading state information... 202s Solving dependencies... 203s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 204s autopkgtest [18:41:26]: test dipole: [----------------------- 204s LAMMPS (4 Feb 2025) 204s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 204s using 1 OpenMP thread(s) per MPI task 204s WARNING: Atom style hybrid defines both, per-type and per-atom masses; both must be set, but only per-atom masses will be used (src/atom_vec_hybrid.cpp:132) 204s Lattice spacing in x,y,z = 1.6903085 1.6903085 1.6903085 204s Created orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 204s 2 by 1 by 1 MPI processor grid 204s Created 200 atoms 204s using lattice units in orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 204s create_atoms CPU = 0.000 seconds 204s Setting atom values ... 204s 200 settings made for mass 204s Setting atom values ... 204s 200 settings made for dipole/random 204s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 204s Neighbor list info ... 204s update: every = 1 steps, delay = 0 steps, check = yes 204s max neighbors/atom: 2000, page size: 100000 204s master list distance cutoff = 2.8 204s ghost atom cutoff = 2.8 204s binsize = 1.4, bins = 13 13 2 204s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 204s (1) pair lj/cut/dipole/cut, perpetual 204s attributes: half, newton on 204s pair build: half/bin/atomonly/newton 204s stencil: half/bin/2d 204s bin: standard 204s Setting up Verlet run ... 204s Unit style : lj 204s Current step : 0 204s Time step : 0.005 204s Per MPI rank memory allocation (min/avg/max) = 5.049 | 5.049 | 5.049 Mbytes 204s Step Temp E_pair c_erot TotEng Press 204s 0 0 -2.0965715 0 -2.0965715 -2.4759659 204s 500 0.37155664 -2.7150631 0.22689419 -2.3453642 -0.33510922 204s 1000 0.42354552 -2.749888 0.21162528 -2.3284602 -0.11120147 204s 1500 0.39778312 -2.7597475 0.24737266 -2.3639533 -0.33856086 204s 2000 0.44906518 -2.8037483 0.24422519 -2.3569284 0.15010152 204s 2500 0.46056435 -2.8144144 0.25015831 -2.3561529 -0.38358808 204s 3000 0.4348415 -2.7856362 0.24988108 -2.3529689 0.086257242 204s 3500 0.41528069 -2.7415634 0.22418981 -2.3283591 0.13066802 204s 4000 0.40006774 -2.7153553 0.22170678 -2.3172879 -0.17425321 204s 4500 0.45764976 -2.7751555 0.2288386 -2.319794 -0.22228559 204s 5000 0.45119236 -2.7437941 0.21642728 -2.2948577 0.086840364 204s 5500 0.41805158 -2.7191643 0.2405108 -2.303203 -0.20373032 204s 6000 0.41353959 -2.73374 0.26555768 -2.3222681 0.013197521 204s 6500 0.46952638 -2.7206692 0.19356607 -2.2534905 -0.32099423 204s 7000 0.4308564 -2.6963241 0.21298331 -2.2676219 0.11638995 204s 7500 0.44328381 -2.767933 0.28845767 -2.3268656 -0.055714929 204s 8000 0.48149201 -2.7648936 0.25607634 -2.2858091 -0.24833472 204s 8500 0.44641155 -2.735761 0.26866772 -2.2915815 -0.11006786 204s 9000 0.45443104 -2.70388 0.2307522 -2.2517211 -0.077100374 205s 9500 0.42544663 -2.6959692 0.25023057 -2.2726498 -0.04183171 205s 10000 0.42622279 -2.6434464 0.2125908 -2.2193547 0.052056849 205s Loop time of 0.481584 on 2 procs for 10000 steps with 200 atoms 205s 205s Performance: 8970400.742 tau/day, 20764.817 timesteps/s, 4.153 Matom-step/s 205s 99.0% CPU use with 2 MPI tasks x 1 OpenMP threads 205s 205s MPI task timing breakdown: 205s Section | min time | avg time | max time |%varavg| %total 205s --------------------------------------------------------------- 205s Pair | 0.26086 | 0.2918 | 0.32274 | 5.7 | 60.59 205s Neigh | 0.014542 | 0.015703 | 0.016863 | 0.9 | 3.26 205s Comm | 0.098732 | 0.12963 | 0.16053 | 8.6 | 26.92 205s Output | 0.00036604 | 0.0008373 | 0.0013086 | 0.0 | 0.17 205s Modify | 0.023737 | 0.025552 | 0.027367 | 1.1 | 5.31 205s Other | | 0.01806 | | | 3.75 205s 205s Nlocal: 100 ave 104 max 96 min 205s Histogram: 1 0 0 0 0 0 0 0 0 1 205s Nghost: 123.5 ave 124 max 123 min 205s Histogram: 1 0 0 0 0 0 0 0 0 1 205s Neighs: 820 ave 885 max 755 min 205s Histogram: 1 0 0 0 0 0 0 0 0 1 205s 205s Total # of neighbors = 1640 205s Ave neighs/atom = 8.2 205s Neighbor list builds = 697 205s Dangerous builds = 0 205s Total wall time: 0:00:00 205s LAMMPS (4 Feb 2025) 205s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 205s using 1 OpenMP thread(s) per MPI task 205s WARNING: Atom style hybrid defines both, per-type and per-atom masses; both must be set, but only per-atom masses will be used (src/atom_vec_hybrid.cpp:132) 205s Lattice spacing in x,y,z = 1.6903085 1.6903085 1.6903085 205s Created orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 205s 1 by 1 by 1 MPI processor grid 205s Created 200 atoms 205s using lattice units in orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 205s create_atoms CPU = 0.000 seconds 205s Setting atom values ... 205s 200 settings made for mass 205s Setting atom values ... 205s 200 settings made for dipole/random 205s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 205s Neighbor list info ... 205s update: every = 1 steps, delay = 0 steps, check = yes 205s max neighbors/atom: 2000, page size: 100000 205s master list distance cutoff = 2.8 205s ghost atom cutoff = 2.8 205s binsize = 1.4, bins = 13 13 2 205s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 205s (1) pair lj/cut/dipole/cut, perpetual 205s attributes: half, newton on 205s pair build: half/bin/atomonly/newton 205s stencil: half/bin/2d 205s bin: standard 205s Setting up Verlet run ... 205s Unit style : lj 205s Current step : 0 205s Time step : 0.005 205s Per MPI rank memory allocation (min/avg/max) = 5.05 | 5.05 | 5.05 Mbytes 205s Step Temp E_pair c_erot TotEng Press 205s 0 0 -2.0965715 0 -2.0965715 -2.4759659 205s 500 0.37155664 -2.7150631 0.22689419 -2.3453642 -0.33510922 205s 1000 0.42354552 -2.749888 0.21162528 -2.3284602 -0.11120147 205s 1500 0.39778312 -2.7597475 0.24737266 -2.3639533 -0.33856087 205s 2000 0.44906137 -2.8037446 0.24422529 -2.3569285 0.15012276 205s 2500 0.46036094 -2.8144628 0.25011505 -2.3564037 -0.37955581 205s 3000 0.44916796 -2.7986738 0.24197589 -2.3517517 -0.23759595 205s 3500 0.43708892 -2.7404913 0.20046667 -2.3055878 -0.068108938 205s 4000 0.4277424 -2.7516171 0.22285533 -2.3260134 -0.38856067 205s 4500 0.41051154 -2.7253155 0.22244047 -2.3168566 -0.56435269 205s 5000 0.3930005 -2.7393881 0.26645487 -2.3483526 -0.14501759 205s 5500 0.48374634 -2.7361451 0.17785357 -2.2548175 -0.23588662 205s 6000 0.44341889 -2.7200909 0.2049925 -2.2788891 0.30169398 205s 6500 0.45604374 -2.7449044 0.23816385 -2.2911408 -0.02615159 205s 7000 0.41178901 -2.7023053 0.24691126 -2.2925752 -0.089298567 205s 7500 0.49214202 -2.7631906 0.22991178 -2.2735093 -0.21670068 205s 8000 0.51272822 -2.7861027 0.23867667 -2.2759381 -0.054576195 205s 8500 0.3942697 -2.6555823 0.23621182 -2.263284 -0.15323416 205s 9000 0.44393797 -2.7051517 0.23305036 -2.2634334 -0.32144821 205s 9500 0.49155958 -2.757627 0.23397146 -2.2685252 0.083278026 205s 10000 0.49343489 -2.7193593 0.19771681 -2.2283916 -0.10873755 205s Loop time of 0.698779 on 1 procs for 10000 steps with 200 atoms 205s 205s Performance: 6182210.187 tau/day, 14310.672 timesteps/s, 2.862 Matom-step/s 205s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads 205s 205s MPI task timing breakdown: 205s Section | min time | avg time | max time |%varavg| %total 205s --------------------------------------------------------------- 205s Pair | 0.5727 | 0.5727 | 0.5727 | 0.0 | 81.96 205s Neigh | 0.030555 | 0.030555 | 0.030555 | 0.0 | 4.37 205s Comm | 0.034618 | 0.034618 | 0.034618 | 0.0 | 4.95 205s Output | 0.00038204 | 0.00038204 | 0.00038204 | 0.0 | 0.05 205s Modify | 0.048659 | 0.048659 | 0.048659 | 0.0 | 6.96 205s Other | | 0.01187 | | | 1.70 205s 205s Nlocal: 200 ave 200 max 200 min 205s Histogram: 1 0 0 0 0 0 0 0 0 0 205s Nghost: 155 ave 155 max 155 min 205s Histogram: 1 0 0 0 0 0 0 0 0 0 205s Neighs: 1664 ave 1664 max 1664 min 205s Histogram: 1 0 0 0 0 0 0 0 0 0 205s 205s Total # of neighbors = 1664 205s Ave neighs/atom = 8.32 205s Neighbor list builds = 697 205s Dangerous builds = 0 205s Total wall time: 0:00:00 205s run: OK 206s autopkgtest [18:41:28]: test dipole: -----------------------] 206s autopkgtest [18:41:28]: test dipole: - - - - - - - - - - results - - - - - - - - - - 206s dipole PASS 207s autopkgtest [18:41:29]: test ellipse: preparing testbed 207s Reading package lists... 207s Building dependency tree... 207s Reading state information... 207s Solving dependencies... 208s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 208s autopkgtest [18:41:30]: test ellipse: [----------------------- 209s LAMMPS (4 Feb 2025) 209s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 209s using 1 OpenMP thread(s) per MPI task 209s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 209s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 209s 2 by 1 by 1 MPI processor grid 209s Created 400 atoms 209s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 209s create_atoms CPU = 0.000 seconds 209s Setting atom values ... 209s 29 settings made for type/fraction 209s Setting atom values ... 209s 371 settings made for mass 209s Setting atom values ... 209s 29 settings made for mass 209s Setting atom values ... 209s 371 settings made for shape 209s Setting atom values ... 209s 29 settings made for shape 209s Setting atom values ... 209s 400 settings made for quat/random 209s 371 atoms in group spheroid 209s 209s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 209s 209s Your simulation uses code contributions which should be cited: 209s - pair gayberne command: doi:10.1063/1.3058435 209s The log file lists these citations in BibTeX format. 209s 209s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 209s 209s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 209s Neighbor list info ... 209s update: every = 1 steps, delay = 0 steps, check = yes 209s max neighbors/atom: 2000, page size: 100000 209s master list distance cutoff = 4.8 209s ghost atom cutoff = 4.8 209s binsize = 2.4, bins = 59 59 3 209s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 209s (1) pair gayberne, perpetual 209s attributes: half, newton on 209s pair build: half/bin/atomonly/newton 209s stencil: half/bin/2d 209s bin: standard 209s Setting up Verlet run ... 209s Unit style : lj 209s Current step : 0 209s Time step : 0.002 209s Per MPI rank memory allocation (min/avg/max) = 4.744 | 4.744 | 4.744 Mbytes 209s Step c_rot E_pair TotEng Press Volume 209s 0 2.3158404 0 2.394 0.04788 20000 209s 100 1.7101139 0 1.7678302 0.034413192 20548.286 209s 200 2.3115592 0 2.3895743 0.04649702 20556.796 209s 300 1.831333 0 1.8931405 0.041256922 18354.646 209s 400 2.1838099 -0.00017499954 2.2573384 0.066506278 13574.023 209s 500 1.9604824 -0.024753591 2.0018228 0.09726581 8392.5882 209s 600 1.983652 -0.13957983 1.858954 0.28044314 4590.4733 209s 700 2.0349282 -0.7537042 1.2545559 0.45904399 2452.437 209s 800 2.1883376 -1.7033514 0.37402366 1.4284826 1377.0458 209s 900 1.8893439 -3.2012297 -1.3190748 3.1235376 889.49388 209s 1000 1.5818588 -4.6980931 -3.1320854 3.6494701 700.71079 209s 1100 1.743968 -5.3117051 -3.573368 1.7907876 666.1204 209s 1200 2.1788951 -5.0690852 -2.8893841 1.0317884 697.08645 209s 1300 2.0067166 -4.6588703 -2.6387448 -0.19855863 763.72651 209s 1400 2.1020191 -4.2786372 -2.1756186 0.5410189 815.37712 209s 1500 1.805494 -4.1713612 -2.3732785 0.88817983 855.41486 209s 1600 2.1414975 -3.9792878 -1.8690882 0.79530679 899.00645 209s 1700 1.9971755 -3.8166601 -1.8380659 0.41343091 945.60821 209s 1800 2.0033499 -3.7524192 -1.7481879 0.76104974 973.71402 209s 1900 2.0083456 -3.7603247 -1.7442111 0.74095065 988.03964 209s 2000 1.952518 -3.6531717 -1.7078819 0.50248125 989.96894 209s Loop time of 0.364513 on 2 procs for 2000 steps with 400 atoms 209s 209s Performance: 948115.108 tau/day, 5486.777 timesteps/s, 2.195 Matom-step/s 209s 97.1% CPU use with 2 MPI tasks x 1 OpenMP threads 209s 209s MPI task timing breakdown: 209s Section | min time | avg time | max time |%varavg| %total 209s --------------------------------------------------------------- 209s Pair | 0.17119 | 0.19318 | 0.21516 | 5.0 | 53.00 209s Neigh | 0.010255 | 0.010353 | 0.010451 | 0.1 | 2.84 209s Comm | 0.035227 | 0.057122 | 0.079017 | 9.2 | 15.67 209s Output | 0.016163 | 0.016277 | 0.016392 | 0.1 | 4.47 209s Modify | 0.07914 | 0.079772 | 0.080404 | 0.2 | 21.88 209s Other | | 0.007812 | | | 2.14 209s 209s Nlocal: 200 ave 211 max 189 min 209s Histogram: 1 0 0 0 0 0 0 0 0 1 209s Nghost: 215 ave 217 max 213 min 209s Histogram: 1 0 0 0 0 0 0 0 0 1 209s Neighs: 1561 ave 1651 max 1471 min 209s Histogram: 1 0 0 0 0 0 0 0 0 1 209s 209s Total # of neighbors = 3122 209s Ave neighs/atom = 7.805 209s Neighbor list builds = 346 209s Dangerous builds = 0 209s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 209s Setting up Verlet run ... 209s Unit style : lj 209s Current step : 2000 209s Time step : 0.002 209s Per MPI rank memory allocation (min/avg/max) = 6.899 | 6.899 | 6.899 Mbytes 209s Step c_rot E_pair TotEng Press Volume 209s 2000 1.952518 -3.6531717 -1.7078819 0.50248125 989.96894 209s 2100 1.9040485 -3.6005672 -1.6802923 0.39862439 989.96894 209s 2200 1.8951971 -3.5921565 -1.6947174 1.0260215 989.96894 209s 2300 2.0029242 -3.7081932 -1.6838651 0.66970247 989.96894 209s 2400 2.0271892 -3.7314226 -1.7100026 0.89700311 989.96894 209s 2500 2.0661249 -3.7753498 -1.7024133 0.57670823 989.96894 209s 2600 2.0610735 -3.7707906 -1.7111976 0.90913324 989.96894 209s 2700 2.0505182 -3.759913 -1.7337449 0.65661806 989.96894 209s 2800 2.1106611 -3.8219493 -1.7370736 0.55275858 989.96894 209s 2900 2.0346954 -3.7427335 -1.7135138 0.69791414 989.96894 209s 3000 2.0331857 -3.7398391 -1.751581 0.051416398 989.96894 209s 3100 1.9983775 -3.7074162 -1.7156494 0.75643227 989.96894 209s 3200 2.1297315 -3.8450391 -1.7173438 1.0595574 989.96894 209s 3300 2.0798058 -3.793496 -1.6857257 1.1572151 989.96894 209s 3400 2.1441179 -3.8596018 -1.7011723 0.61261295 989.96894 209s 3500 2.1035108 -3.8190033 -1.6997662 0.99653756 989.96894 209s 3600 2.0856923 -3.7988484 -1.7184312 1.1264485 989.96894 209s 3700 2.1029212 -3.8148833 -1.7096948 0.96828131 989.96894 209s 3800 2.0253659 -3.7349822 -1.7382292 0.56254829 989.96894 210s 3900 1.9686055 -3.6775217 -1.7283017 1.2472863 989.96894 210s 4000 2.0951026 -3.8095594 -1.6876041 0.79798093 989.96894 210s Loop time of 0.35638 on 2 procs for 2000 steps with 400 atoms 210s 210s Performance: 969751.098 tau/day, 5611.986 timesteps/s, 2.245 Matom-step/s 210s 98.1% CPU use with 2 MPI tasks x 1 OpenMP threads 210s 210s MPI task timing breakdown: 210s Section | min time | avg time | max time |%varavg| %total 210s --------------------------------------------------------------- 210s Pair | 0.24731 | 0.24846 | 0.24961 | 0.2 | 69.72 210s Neigh | 0.0026007 | 0.0029424 | 0.003284 | 0.6 | 0.83 210s Comm | 0.038074 | 0.038879 | 0.039684 | 0.4 | 10.91 210s Output | 0.016382 | 0.016496 | 0.016611 | 0.1 | 4.63 210s Modify | 0.03676 | 0.040914 | 0.045068 | 2.1 | 11.48 210s Other | | 0.008687 | | | 2.44 210s 210s Nlocal: 200 ave 227 max 173 min 210s Histogram: 1 0 0 0 0 0 0 0 0 1 210s Nghost: 211 ave 219 max 203 min 210s Histogram: 1 0 0 0 0 0 0 0 0 1 210s Neighs: 1650.5 ave 1950 max 1351 min 210s Histogram: 1 0 0 0 0 0 0 0 0 1 210s 210s Total # of neighbors = 3301 210s Ave neighs/atom = 8.2525 210s Neighbor list builds = 49 210s Dangerous builds = 0 210s Total wall time: 0:00:00 210s LAMMPS (4 Feb 2025) 210s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 210s using 1 OpenMP thread(s) per MPI task 210s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 210s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 210s 1 by 1 by 1 MPI processor grid 210s Created 400 atoms 210s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 210s create_atoms CPU = 0.000 seconds 210s Setting atom values ... 210s 29 settings made for type/fraction 210s Setting atom values ... 210s 371 settings made for mass 210s Setting atom values ... 210s 29 settings made for mass 210s Setting atom values ... 210s 371 settings made for shape 210s Setting atom values ... 210s 29 settings made for shape 210s Setting atom values ... 210s 400 settings made for quat/random 210s 371 atoms in group spheroid 210s 210s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 210s 210s Your simulation uses code contributions which should be cited: 210s - pair gayberne command: doi:10.1063/1.3058435 210s The log file lists these citations in BibTeX format. 210s 210s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 210s 210s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 210s Neighbor list info ... 210s update: every = 1 steps, delay = 0 steps, check = yes 210s max neighbors/atom: 2000, page size: 100000 210s master list distance cutoff = 4.8 210s ghost atom cutoff = 4.8 210s binsize = 2.4, bins = 59 59 3 210s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 210s (1) pair gayberne, perpetual 210s attributes: half, newton on 210s pair build: half/bin/atomonly/newton 210s stencil: half/bin/2d 210s bin: standard 210s Setting up Verlet run ... 210s Unit style : lj 210s Current step : 0 210s Time step : 0.002 210s Per MPI rank memory allocation (min/avg/max) = 4.753 | 4.753 | 4.753 Mbytes 210s Step c_rot E_pair TotEng Press Volume 210s 0 2.3158404 0 2.394 0.04788 20000 210s 100 1.7101139 0 1.7678302 0.034413192 20548.286 210s 200 2.3115592 0 2.3895743 0.04649702 20556.796 210s 300 1.831333 0 1.8931405 0.041256922 18354.646 210s 400 2.1838099 -0.00017499954 2.2573384 0.066506278 13574.023 210s 500 1.9604824 -0.024753591 2.0018228 0.09726581 8392.5882 210s 600 1.983652 -0.13957983 1.858954 0.28044314 4590.4733 210s 700 2.0349282 -0.7537042 1.2545559 0.45904399 2452.437 210s 800 2.1883376 -1.7033514 0.37402366 1.4284826 1377.0458 210s 900 1.8893439 -3.2012297 -1.3190748 3.1235376 889.49388 210s 1000 1.5818588 -4.6980931 -3.1320854 3.6494701 700.71079 210s 1100 1.743968 -5.3117051 -3.573368 1.7907876 666.1204 210s 1200 2.1788951 -5.0690852 -2.8893841 1.0317884 697.08645 210s 1300 2.0067166 -4.6588703 -2.6387448 -0.19855863 763.72651 210s 1400 2.1020191 -4.2786372 -2.1756186 0.5410189 815.37712 210s 1500 1.805494 -4.1713612 -2.3732785 0.88817983 855.41486 210s 1600 2.1414975 -3.9792878 -1.8690882 0.79530679 899.00645 210s 1700 1.9971755 -3.8166601 -1.8380659 0.41343092 945.60821 210s 1800 2.0033499 -3.7524192 -1.7481879 0.76104975 973.71402 210s 1900 2.0083456 -3.7603247 -1.7442111 0.74095064 988.03964 210s 2000 1.952518 -3.6531717 -1.7078819 0.50248128 989.96894 210s Loop time of 0.569666 on 1 procs for 2000 steps with 400 atoms 210s 210s Performance: 606670.914 tau/day, 3510.827 timesteps/s, 1.404 Matom-step/s 210s 99.0% CPU use with 1 MPI tasks x 1 OpenMP threads 210s 210s MPI task timing breakdown: 210s Section | min time | avg time | max time |%varavg| %total 210s --------------------------------------------------------------- 210s Pair | 0.37971 | 0.37971 | 0.37971 | 0.0 | 66.66 211s Neigh | 0.02076 | 0.02076 | 0.02076 | 0.0 | 3.64 211s Comm | 0.010549 | 0.010549 | 0.010549 | 0.0 | 1.85 211s Output | 0.019564 | 0.019564 | 0.019564 | 0.0 | 3.43 211s Modify | 0.13412 | 0.13412 | 0.13412 | 0.0 | 23.54 211s Other | | 0.00496 | | | 0.87 211s 211s Nlocal: 400 ave 400 max 400 min 211s Histogram: 1 0 0 0 0 0 0 0 0 0 211s Nghost: 276 ave 276 max 276 min 211s Histogram: 1 0 0 0 0 0 0 0 0 0 211s Neighs: 3122 ave 3122 max 3122 min 211s Histogram: 1 0 0 0 0 0 0 0 0 0 211s 211s Total # of neighbors = 3122 211s Ave neighs/atom = 7.805 211s Neighbor list builds = 346 211s Dangerous builds = 0 211s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 211s Setting up Verlet run ... 211s Unit style : lj 211s Current step : 2000 211s Time step : 0.002 211s Per MPI rank memory allocation (min/avg/max) = 6.926 | 6.926 | 6.926 Mbytes 211s Step c_rot E_pair TotEng Press Volume 211s 2000 1.952518 -3.6531717 -1.7078819 0.50248128 989.96894 211s 2100 1.9040485 -3.6005672 -1.6802923 0.39862438 989.96894 211s 2200 1.8951971 -3.5921566 -1.6947174 1.0260215 989.96894 211s 2300 2.0029244 -3.7081934 -1.6838652 0.66970135 989.96894 211s 2400 2.0271885 -3.731422 -1.7100022 0.89700608 989.96894 211s 2500 2.066122 -3.7753468 -1.7024127 0.57671483 989.96894 211s 2600 2.0610701 -3.7707871 -1.7111979 0.90915268 989.96894 211s 2700 2.0505226 -3.7599192 -1.7337496 0.65661546 989.96894 211s 2800 2.1106391 -3.8219307 -1.7370733 0.55280503 989.96894 211s 2900 2.0347598 -3.7428025 -1.7135189 0.69781833 989.96894 211s 3000 2.0330208 -3.7396616 -1.7515118 0.052338568 989.96894 211s 3100 1.9979524 -3.7070895 -1.715955 0.75689837 989.96894 211s 3200 2.1279004 -3.8431144 -1.7172074 1.0681978 989.96894 211s 3300 2.0795122 -3.7933999 -1.6843677 1.160141 989.96894 211s 3400 2.1458506 -3.8618217 -1.7011471 0.60302387 989.96894 211s 3500 2.0922186 -3.8066733 -1.7042032 1.020929 989.96894 211s 3600 2.0923687 -3.8049721 -1.7151823 0.97720853 989.96894 211s 3700 2.1082732 -3.8201734 -1.6945215 0.97495003 989.96894 211s 3800 2.0883146 -3.8011237 -1.6897726 0.59373082 989.96894 211s 3900 2.1821449 -3.8971145 -1.6976484 0.53241288 989.96894 211s 4000 2.103916 -3.8154046 -1.6865256 0.96939819 989.96894 211s Loop time of 0.617965 on 1 procs for 2000 steps with 400 atoms 211s 211s Performance: 559254.766 tau/day, 3236.428 timesteps/s, 1.295 Matom-step/s 211s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads 211s 211s MPI task timing breakdown: 211s Section | min time | avg time | max time |%varavg| %total 211s --------------------------------------------------------------- 211s Pair | 0.49431 | 0.49431 | 0.49431 | 0.0 | 79.99 211s Neigh | 0.0059607 | 0.0059607 | 0.0059607 | 0.0 | 0.96 211s Comm | 0.011862 | 0.011862 | 0.011862 | 0.0 | 1.92 211s Output | 0.019614 | 0.019614 | 0.019614 | 0.0 | 3.17 211s Modify | 0.082116 | 0.082116 | 0.082116 | 0.0 | 13.29 211s Other | | 0.0041 | | | 0.66 211s 211s Nlocal: 400 ave 400 max 400 min 211s Histogram: 1 0 0 0 0 0 0 0 0 0 211s Nghost: 284 ave 284 max 284 min 211s Histogram: 1 0 0 0 0 0 0 0 0 0 211s Neighs: 3287 ave 3287 max 3287 min 211s Histogram: 1 0 0 0 0 0 0 0 0 0 211s 211s Total # of neighbors = 3287 211s Ave neighs/atom = 8.2175 211s Neighbor list builds = 51 211s Dangerous builds = 0 211s Total wall time: 0:00:01 211s LAMMPS (4 Feb 2025) 211s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 211s using 1 OpenMP thread(s) per MPI task 211s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 211s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 211s 2 by 1 by 1 MPI processor grid 211s Created 400 atoms 211s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 211s create_atoms CPU = 0.001 seconds 211s Setting atom values ... 211s 29 settings made for type/fraction 211s Setting atom values ... 211s 371 settings made for mass 211s Setting atom values ... 211s 29 settings made for mass 211s Setting atom values ... 211s 371 settings made for shape 211s Setting atom values ... 211s 29 settings made for shape 211s Setting atom values ... 211s 400 settings made for quat/random 211s 371 atoms in group spheroid 211s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 211s Neighbor list info ... 211s update: every = 1 steps, delay = 0 steps, check = yes 211s max neighbors/atom: 2000, page size: 100000 211s master list distance cutoff = 4.8 211s ghost atom cutoff = 4.8 211s binsize = 2.4, bins = 59 59 3 211s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 211s (1) pair resquared, perpetual 211s attributes: half, newton on 211s pair build: half/bin/atomonly/newton 211s stencil: half/bin/2d 211s bin: standard 211s Setting up Verlet run ... 211s Unit style : lj 211s Current step : 0 211s Time step : 0.002 211s Per MPI rank memory allocation (min/avg/max) = 4.744 | 4.744 | 4.744 Mbytes 211s Step c_rot E_pair TotEng Press Volume 211s 0 2.3158404 0 2.394 0.04788 20000 211s 100 1.7101139 0 1.7678302 0.034413192 20548.286 211s 200 2.3115592 0 2.3895743 0.04649702 20556.796 211s 300 1.831333 0 1.8931405 0.041256922 18354.646 211s 400 2.1837684 -8.9738883e-06 2.2574616 0.066522186 13574.035 211s 500 1.9709471 0.0022832653 2.017568 0.098398099 8395.6884 211s 600 2.1312025 0.15575534 2.2465639 0.43878461 4664.4094 211s 700 1.9768729 0.20704026 2.1544534 0.85727857 2661.7782 211s 800 1.8049358 0.20410493 1.965827 1.2647972 1769.9195 211s 900 1.8115555 0.2163004 1.9984639 1.6554526 1443.3838 211s 1000 1.9171641 0.2328859 2.1621182 1.7795638 1436.7766 211s 1100 1.9523886 0.09158383 2.0589755 0.91188602 1668.1861 211s 1200 2.0844678 0.062228051 2.0997798 0.63282414 2088.0586 211s 1300 1.9225253 0.052820284 1.9484124 0.44379326 2643.4175 211s 1400 2.1265088 0.033305088 2.1345672 0.34979266 3172.6223 211s 1500 1.9551661 0.053995306 2.0077177 0.34810901 3444.8372 211s 1600 2.15222 0.057084004 2.1910214 0.39212275 3290.66 211s 1700 2.0126393 0.092807299 2.0739086 0.53567035 2812.2166 211s 1800 2.1109716 0.18678852 2.2572287 1.0092292 2267.5536 212s 1900 1.9107655 0.26801333 2.1635401 1.5374301 1862.3897 212s 2000 1.9034522 0.24431156 2.1576939 1.5998792 1639.6982 212s Loop time of 0.54353 on 2 procs for 2000 steps with 400 atoms 212s 212s Performance: 635843.511 tau/day, 3679.650 timesteps/s, 1.472 Matom-step/s 212s 98.0% CPU use with 2 MPI tasks x 1 OpenMP threads 212s 212s MPI task timing breakdown: 212s Section | min time | avg time | max time |%varavg| %total 212s --------------------------------------------------------------- 212s Pair | 0.38289 | 0.3902 | 0.39751 | 1.2 | 71.79 212s Neigh | 0.010799 | 0.010911 | 0.011022 | 0.1 | 2.01 212s Comm | 0.032951 | 0.040147 | 0.047342 | 3.6 | 7.39 212s Output | 0.015667 | 0.015768 | 0.015869 | 0.1 | 2.90 212s Modify | 0.077679 | 0.078464 | 0.079248 | 0.3 | 14.44 212s Other | | 0.008038 | | | 1.48 212s 212s Nlocal: 200 ave 210 max 190 min 212s Histogram: 1 0 0 0 0 0 0 0 0 1 212s Nghost: 164 ave 168 max 160 min 212s Histogram: 1 0 0 0 0 0 0 0 0 1 212s Neighs: 910 ave 958 max 862 min 212s Histogram: 1 0 0 0 0 0 0 0 0 1 212s 212s Total # of neighbors = 1820 212s Ave neighs/atom = 4.55 212s Neighbor list builds = 420 212s Dangerous builds = 0 212s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 212s Setting up Verlet run ... 212s Unit style : lj 212s Current step : 2000 212s Time step : 0.002 212s Per MPI rank memory allocation (min/avg/max) = 6.89 | 6.89 | 6.89 Mbytes 212s Step c_rot E_pair TotEng Press Volume 212s 2000 1.9034522 0.24431156 2.1576939 1.5998792 1639.6982 212s 2100 1.9990056 0.14555548 2.132148 1.1813518 1639.6982 212s 2200 1.9913934 0.15343329 2.1279388 1.2079524 1639.6982 212s 2300 1.9931915 0.15156716 2.1646511 1.1963228 1639.6982 212s 2400 1.9969018 0.14779678 2.1413044 1.1999441 1639.6982 212s 2500 1.9401284 0.20640998 2.168038 1.4643778 1639.6982 212s 2600 1.9492999 0.19710633 2.136292 1.3812079 1639.6982 212s 2700 2.0106221 0.13364602 2.1384766 1.1322764 1639.6982 212s 2800 1.9890373 0.15589592 2.1204126 1.2343376 1639.6982 212s 2900 1.9922852 0.15256975 2.0956529 1.2419165 1639.6982 212s 3000 1.9618081 0.18405955 2.1392907 1.3468024 1639.6982 212s 3100 1.920815 0.22640753 2.1223513 1.6487874 1639.6982 212s 3200 1.9201455 0.22718151 2.1360379 1.537008 1639.6982 212s 3300 2.0073207 0.13690691 2.1185858 1.1973827 1639.6982 212s 3400 2.0179674 0.12601938 2.1227815 1.0847666 1639.6982 212s 3500 1.9561038 0.18991636 2.11504 1.3377604 1639.6982 212s 3600 1.9971208 0.14756321 2.1401442 1.2026471 1639.6982 212s 3700 1.9731986 0.17227975 2.1472974 1.2730305 1639.6982 212s 3800 2.0000945 0.1444447 2.0994588 1.1502433 1639.6982 212s 3900 1.9911415 0.15372488 2.1423535 1.227966 1639.6982 212s 4000 1.9822293 0.16299254 2.0899439 1.2166942 1639.6982 212s Loop time of 0.836883 on 2 procs for 2000 steps with 400 atoms 212s 212s Performance: 412961.116 tau/day, 2389.821 timesteps/s, 955.929 katom-step/s 212s 99.4% CPU use with 2 MPI tasks x 1 OpenMP threads 212s 212s MPI task timing breakdown: 212s Section | min time | avg time | max time |%varavg| %total 212s --------------------------------------------------------------- 212s Pair | 0.67377 | 0.70743 | 0.74108 | 4.0 | 84.53 212s Neigh | 0.0021508 | 0.0022664 | 0.0023821 | 0.2 | 0.27 212s Comm | 0.028147 | 0.061817 | 0.095487 | 13.5 | 7.39 212s Output | 0.016064 | 0.016179 | 0.016293 | 0.1 | 1.93 212s Modify | 0.03954 | 0.041766 | 0.043991 | 1.1 | 4.99 212s Other | | 0.007428 | | | 0.89 212s 212s Nlocal: 200 ave 212 max 188 min 212s Histogram: 1 0 0 0 0 0 0 0 0 1 212s Nghost: 171.5 ave 173 max 170 min 212s Histogram: 1 0 0 0 0 0 0 0 0 1 212s Neighs: 880.5 ave 946 max 815 min 212s Histogram: 1 0 0 0 0 0 0 0 0 1 212s 212s Total # of neighbors = 1761 212s Ave neighs/atom = 4.4025 212s Neighbor list builds = 49 212s Dangerous builds = 0 212s Total wall time: 0:00:01 213s LAMMPS (4 Feb 2025) 214s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 214s using 1 OpenMP thread(s) per MPI task 214s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 214s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 214s 1 by 1 by 1 MPI processor grid 214s Created 400 atoms 214s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 214s create_atoms CPU = 0.000 seconds 214s Setting atom values ... 214s 29 settings made for type/fraction 214s Setting atom values ... 214s 371 settings made for mass 214s Setting atom values ... 214s 29 settings made for mass 214s Setting atom values ... 214s 371 settings made for shape 214s Setting atom values ... 214s 29 settings made for shape 214s Setting atom values ... 214s 400 settings made for quat/random 214s 371 atoms in group spheroid 214s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 214s Neighbor list info ... 214s update: every = 1 steps, delay = 0 steps, check = yes 214s max neighbors/atom: 2000, page size: 100000 214s master list distance cutoff = 4.8 214s ghost atom cutoff = 4.8 214s binsize = 2.4, bins = 59 59 3 214s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 214s (1) pair resquared, perpetual 214s attributes: half, newton on 214s pair build: half/bin/atomonly/newton 214s stencil: half/bin/2d 214s bin: standard 214s Setting up Verlet run ... 214s Unit style : lj 214s Current step : 0 214s Time step : 0.002 214s Per MPI rank memory allocation (min/avg/max) = 4.753 | 4.753 | 4.753 Mbytes 214s Step c_rot E_pair TotEng Press Volume 214s 0 2.3158404 0 2.394 0.04788 20000 214s 100 1.7101139 0 1.7678302 0.034413192 20548.286 214s 200 2.3115592 0 2.3895743 0.04649702 20556.796 214s 300 1.831333 0 1.8931405 0.041256922 18354.646 214s 400 2.1837684 -8.9738883e-06 2.2574616 0.066522186 13574.035 214s 500 1.9709471 0.0022832653 2.017568 0.098398099 8395.6884 214s 600 2.1312025 0.15575534 2.2465639 0.43878461 4664.4094 214s 700 1.9768729 0.20704026 2.1544534 0.85727857 2661.7782 214s 800 1.8049358 0.20410493 1.965827 1.2647972 1769.9195 214s 900 1.8115555 0.2163004 1.9984639 1.6554526 1443.3838 214s 1000 1.9171641 0.2328859 2.1621182 1.7795638 1436.7766 214s 1100 1.9523886 0.09158383 2.0589755 0.91188602 1668.1861 214s 1200 2.0844678 0.062228051 2.0997798 0.63282414 2088.0586 214s 1300 1.9225253 0.052820284 1.9484124 0.44379326 2643.4175 214s 1400 2.1265088 0.033305088 2.1345672 0.34979266 3172.6223 214s 1500 1.9551661 0.053995306 2.0077177 0.34810901 3444.8372 214s 1600 2.15222 0.057084004 2.1910214 0.39212275 3290.66 214s 1700 2.0126393 0.092807299 2.0739086 0.53567035 2812.2166 214s 1800 2.1109716 0.18678852 2.2572287 1.0092292 2267.5536 214s 1900 1.9107655 0.26801333 2.1635401 1.5374301 1862.3897 214s 2000 1.9034522 0.24431156 2.1576939 1.5998792 1639.6982 214s Loop time of 0.980396 on 1 procs for 2000 steps with 400 atoms 214s 214s Performance: 352510.640 tau/day, 2039.992 timesteps/s, 815.997 katom-step/s 214s 99.1% CPU use with 1 MPI tasks x 1 OpenMP threads 214s 214s MPI task timing breakdown: 214s Section | min time | avg time | max time |%varavg| %total 214s --------------------------------------------------------------- 214s Pair | 0.79011 | 0.79011 | 0.79011 | 0.0 | 80.59 214s Neigh | 0.021296 | 0.021296 | 0.021296 | 0.0 | 2.17 214s Comm | 0.0084003 | 0.0084003 | 0.0084003 | 0.0 | 0.86 214s Output | 0.019461 | 0.019461 | 0.019461 | 0.0 | 1.99 214s Modify | 0.13575 | 0.13575 | 0.13575 | 0.0 | 13.85 215s Other | | 0.005384 | | | 0.55 215s 215s Nlocal: 400 ave 400 max 400 min 215s Histogram: 1 0 0 0 0 0 0 0 0 0 215s Nghost: 206 ave 206 max 206 min 215s Histogram: 1 0 0 0 0 0 0 0 0 0 215s Neighs: 1820 ave 1820 max 1820 min 215s Histogram: 1 0 0 0 0 0 0 0 0 0 215s 215s Total # of neighbors = 1820 215s Ave neighs/atom = 4.55 215s Neighbor list builds = 420 215s Dangerous builds = 0 215s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 215s Setting up Verlet run ... 215s Unit style : lj 215s Current step : 2000 215s Time step : 0.002 215s Per MPI rank memory allocation (min/avg/max) = 6.917 | 6.917 | 6.917 Mbytes 215s Step c_rot E_pair TotEng Press Volume 215s 2000 1.9034522 0.24431156 2.1576939 1.5998792 1639.6982 215s 2100 1.9990056 0.14555548 2.132148 1.1813518 1639.6982 215s 2200 1.9913934 0.15343329 2.1279388 1.2079524 1639.6982 215s 2300 1.9931915 0.15156716 2.1646511 1.1963228 1639.6982 215s 2400 1.9969018 0.14779678 2.1413044 1.1999441 1639.6982 215s 2500 1.9401284 0.20640998 2.168038 1.4643778 1639.6982 215s 2600 1.9492999 0.19710633 2.136292 1.3812079 1639.6982 215s 2700 2.0106221 0.13364602 2.1384766 1.1322764 1639.6982 215s 2800 1.9890373 0.15589593 2.1204126 1.2343376 1639.6982 215s 2900 1.9922852 0.15256971 2.0956529 1.2419163 1639.6982 215s 3000 1.9618081 0.18405956 2.1392907 1.3468024 1639.6982 215s 3100 1.9208147 0.22640783 2.1223514 1.6487893 1639.6982 215s 3200 1.9201454 0.2271816 2.136038 1.5370083 1639.6982 215s 3300 2.0073199 0.13690769 2.1185864 1.1973892 1639.6982 215s 3400 2.0179674 0.12601938 2.1227814 1.0847667 1639.6982 215s 3500 1.9561059 0.1899142 2.1150384 1.3377509 1639.6982 215s 3600 1.9971218 0.14756225 2.1401434 1.2026401 1639.6982 215s 3700 1.9731874 0.17229133 2.1473283 1.2730808 1639.6982 215s 3800 2.0000992 0.14443988 2.0994807 1.1502356 1639.6982 215s 3900 1.9911429 0.15372349 2.1424035 1.227982 1639.6982 215s 4000 1.9823333 0.16288519 2.0899581 1.2162824 1639.6982 215s Loop time of 1.56447 on 1 procs for 2000 steps with 400 atoms 215s 215s Performance: 220904.941 tau/day, 1278.385 timesteps/s, 511.354 katom-step/s 215s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads 215s 215s MPI task timing breakdown: 215s Section | min time | avg time | max time |%varavg| %total 215s --------------------------------------------------------------- 215s Pair | 1.4434 | 1.4434 | 1.4434 | 0.0 | 92.26 215s Neigh | 0.0042959 | 0.0042959 | 0.0042959 | 0.0 | 0.27 215s Comm | 0.0091204 | 0.0091204 | 0.0091204 | 0.0 | 0.58 215s Output | 0.019729 | 0.019729 | 0.019729 | 0.0 | 1.26 215s Modify | 0.083391 | 0.083391 | 0.083391 | 0.0 | 5.33 215s Other | | 0.004499 | | | 0.29 215s 215s Nlocal: 400 ave 400 max 400 min 215s Histogram: 1 0 0 0 0 0 0 0 0 0 215s Nghost: 215 ave 215 max 215 min 215s Histogram: 1 0 0 0 0 0 0 0 0 0 215s Neighs: 1761 ave 1761 max 1761 min 215s Histogram: 1 0 0 0 0 0 0 0 0 0 215s 215s Total # of neighbors = 1761 215s Ave neighs/atom = 4.4025 215s Neighbor list builds = 49 215s Dangerous builds = 0 215s Total wall time: 0:00:02 215s run: OK 215s autopkgtest [18:41:37]: test ellipse: -----------------------] 216s ellipse PASS 216s autopkgtest [18:41:38]: test ellipse: - - - - - - - - - - results - - - - - - - - - - 216s autopkgtest [18:41:38]: test flow: preparing testbed 217s Reading package lists... 217s Building dependency tree... 217s Reading state information... 217s Solving dependencies... 217s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 218s autopkgtest [18:41:40]: test flow: [----------------------- 219s LAMMPS (4 Feb 2025) 219s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 219s using 1 OpenMP thread(s) per MPI task 219s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 219s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 219s 2 by 1 by 1 MPI processor grid 219s Created 420 atoms 219s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 219s create_atoms CPU = 0.000 seconds 219s 60 atoms in group lower 219s 60 atoms in group upper 219s 120 atoms in group boundary 219s 300 atoms in group flow 219s Setting atom values ... 219s 60 settings made for type 219s Setting atom values ... 219s 60 settings made for type 219s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:551) 219s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 219s Neighbor list info ... 219s update: every = 1 steps, delay = 5 steps, check = yes 219s max neighbors/atom: 2000, page size: 100000 219s master list distance cutoff = 1.42246 219s ghost atom cutoff = 1.42246 219s binsize = 0.71123, bins = 37 32 1 219s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 219s (1) pair lj/cut, perpetual 219s attributes: half, newton on 219s pair build: half/bin/atomonly/newton 219s stencil: half/bin/2d 219s bin: standard 219s Setting up Verlet run ... 219s Unit style : lj 219s Current step : 0 219s Time step : 0.003 219s Per MPI rank memory allocation (min/avg/max) = 3.044 | 3.044 | 3.044 Mbytes 219s Step Temp E_pair E_mol TotEng Press Volume 219s 0 1 0 0 0.71190476 0.52314537 571.54286 219s 500 1.0951876 -0.33403931 0 0.44562996 3.2502319 571.54286 219s 1000 1 -0.3731019 0 0.33880286 2.8561715 571.54286 219s 1500 1.0366879 -0.36031105 0 0.37771198 3.0196355 571.54286 219s 2000 1 -0.41053025 0 0.30137451 2.8651905 571.54286 219s 2500 1.1226126 -0.37018872 0 0.42900451 2.9459225 571.54286 219s 3000 1 -0.40149829 0 0.31040647 2.7056256 571.54286 219s 3500 1.071429 -0.46774125 0 0.29501417 2.5582838 571.54286 219s 4000 1 -0.39054248 0 0.32136228 2.4314528 571.54286 219s 4500 1.029458 -0.40311018 0 0.32976584 2.5012442 571.54286 219s 5000 1 -0.44252019 0 0.26938457 2.3566317 571.54286 219s 5500 1.0715559 -0.4771158 0 0.28572997 2.420979 571.54286 219s 6000 1 -0.42490153 0 0.28700323 2.4032097 571.54286 219s 6500 1.1729217 -0.43515146 0 0.39985708 2.3670704 571.54286 219s 7000 1 -0.4539943 0 0.25791046 2.36148 571.54286 219s 7500 1.1676524 -0.40784405 0 0.42341328 2.699336 571.54286 219s 8000 1 -0.37626352 0 0.33564124 2.8174026 571.54286 219s 8500 1.1583539 -0.41258281 0 0.41205487 2.6617634 571.54286 219s 9000 1 -0.42918407 0 0.28272069 2.3090418 571.54286 219s 9500 1.0432103 -0.39042315 0 0.3522432 2.6910698 571.54286 219s 10000 1 -0.4676995 0 0.24420526 2.3898708 571.54286 219s Loop time of 0.167094 on 2 procs for 10000 steps with 420 atoms 219s 219s Performance: 15512223.123 tau/day, 59846.540 timesteps/s, 25.136 Matom-step/s 219s 97.3% CPU use with 2 MPI tasks x 1 OpenMP threads 219s 219s MPI task timing breakdown: 219s Section | min time | avg time | max time |%varavg| %total 219s --------------------------------------------------------------- 219s Pair | 0.035792 | 0.036077 | 0.036362 | 0.1 | 21.59 219s Neigh | 0.020312 | 0.020463 | 0.020615 | 0.1 | 12.25 219s Comm | 0.064426 | 0.064948 | 0.06547 | 0.2 | 38.87 219s Output | 0.00032856 | 0.0014186 | 0.0025085 | 2.9 | 0.85 219s Modify | 0.026591 | 0.026732 | 0.026872 | 0.1 | 16.00 219s Other | | 0.01746 | | | 10.45 219s 219s Nlocal: 210 ave 214 max 206 min 219s Histogram: 1 0 0 0 0 0 0 0 0 1 219s Nghost: 51 ave 52 max 50 min 219s Histogram: 1 0 0 0 0 0 0 0 0 1 219s Neighs: 472 ave 494 max 450 min 219s Histogram: 1 0 0 0 0 0 0 0 0 1 219s 219s Total # of neighbors = 944 219s Ave neighs/atom = 2.247619 219s Neighbor list builds = 994 219s Dangerous builds = 0 219s Total wall time: 0:00:00 219s LAMMPS (4 Feb 2025) 219s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 219s using 1 OpenMP thread(s) per MPI task 219s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 219s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 219s 1 by 1 by 1 MPI processor grid 219s Created 420 atoms 219s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 219s create_atoms CPU = 0.000 seconds 219s 60 atoms in group lower 219s 60 atoms in group upper 219s 120 atoms in group boundary 219s 300 atoms in group flow 219s Setting atom values ... 219s 60 settings made for type 219s Setting atom values ... 219s 60 settings made for type 219s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:551) 219s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 219s Neighbor list info ... 219s update: every = 1 steps, delay = 5 steps, check = yes 219s max neighbors/atom: 2000, page size: 100000 219s master list distance cutoff = 1.42246 219s ghost atom cutoff = 1.42246 219s binsize = 0.71123, bins = 37 32 1 219s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 219s (1) pair lj/cut, perpetual 219s attributes: half, newton on 219s pair build: half/bin/atomonly/newton 219s stencil: half/bin/2d 219s bin: standard 219s Setting up Verlet run ... 219s Unit style : lj 219s Current step : 0 219s Time step : 0.003 219s Per MPI rank memory allocation (min/avg/max) = 3.048 | 3.048 | 3.048 Mbytes 219s Step Temp E_pair E_mol TotEng Press Volume 219s 0 1 0 0 0.71190476 0.52314537 571.54286 219s 500 1.0644427 -0.31382888 0 0.44395296 3.0013076 571.54286 219s 1000 1 -0.42965445 0 0.28225032 2.9612165 571.54286 219s 1500 1.0739874 -0.41189772 0 0.35267901 2.5621951 571.54286 219s 2000 1 -0.40814262 0 0.30376214 2.9229597 571.54286 219s 2500 1.193035 -0.38493995 0 0.46438736 2.8340607 571.54286 219s 3000 1 -0.45564537 0 0.2562594 2.7506498 571.54286 219s 3500 1.0626882 -0.45013361 0 0.30639918 2.5530157 571.54286 219s 4000 1 -0.39613722 0 0.31576755 2.4669827 571.54286 219s 4500 1.0832856 -0.43003699 0 0.34115919 2.2569491 571.54286 219s 5000 1 -0.42733451 0 0.28457025 2.4685826 571.54286 219s 5500 1.0413391 -0.39346589 0 0.34786835 2.6348761 571.54286 219s 6000 1 -0.42845926 0 0.2834455 2.4988125 571.54286 219s 6500 1.0890296 -0.43775517 0 0.33753016 2.4384217 571.54286 219s 7000 1 -0.46023483 0 0.25166993 2.4429964 571.54286 219s 7500 1.0644341 -0.45175861 0 0.3060171 2.4324515 571.54286 219s 8000 1 -0.43920605 0 0.27269871 2.6469713 571.54286 219s 8500 1.0647184 -0.45399641 0 0.3039817 2.5748114 571.54286 219s 9000 1 -0.46453995 0 0.24736482 2.6591355 571.54286 219s 9500 1.0123 -0.44029216 0 0.28036906 2.413597 571.54286 219s 10000 1 -0.43826448 0 0.27364028 2.3699706 571.54286 219s Loop time of 0.182306 on 1 procs for 10000 steps with 420 atoms 219s 219s Performance: 14217891.636 tau/day, 54852.977 timesteps/s, 23.038 Matom-step/s 219s 99.6% CPU use with 1 MPI tasks x 1 OpenMP threads 219s 219s MPI task timing breakdown: 219s Section | min time | avg time | max time |%varavg| %total 219s --------------------------------------------------------------- 219s Pair | 0.071304 | 0.071304 | 0.071304 | 0.0 | 39.11 219s Neigh | 0.038774 | 0.038774 | 0.038774 | 0.0 | 21.27 219s Comm | 0.0062971 | 0.0062971 | 0.0062971 | 0.0 | 3.45 219s Output | 0.00026308 | 0.00026308 | 0.00026308 | 0.0 | 0.14 219s Modify | 0.049891 | 0.049891 | 0.049891 | 0.0 | 27.37 219s Other | | 0.01578 | | | 8.65 219s 219s Nlocal: 420 ave 420 max 420 min 219s Histogram: 1 0 0 0 0 0 0 0 0 0 219s Nghost: 50 ave 50 max 50 min 219s Histogram: 1 0 0 0 0 0 0 0 0 0 219s Neighs: 946 ave 946 max 946 min 219s Histogram: 1 0 0 0 0 0 0 0 0 0 219s 219s Total # of neighbors = 946 219s Ave neighs/atom = 2.252381 219s Neighbor list builds = 979 219s Dangerous builds = 0 219s Total wall time: 0:00:00 219s LAMMPS (4 Feb 2025) 219s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 219s using 1 OpenMP thread(s) per MPI task 219s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 219s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 219s 2 by 1 by 1 MPI processor grid 219s Created 420 atoms 219s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 219s create_atoms CPU = 0.000 seconds 219s 60 atoms in group lower 219s 60 atoms in group upper 219s 120 atoms in group boundary 219s 300 atoms in group flow 219s Setting atom values ... 219s 60 settings made for type 219s Setting atom values ... 219s 60 settings made for type 219s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:551) 219s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 219s Neighbor list info ... 219s update: every = 1 steps, delay = 5 steps, check = yes 219s max neighbors/atom: 2000, page size: 100000 219s master list distance cutoff = 1.42246 219s ghost atom cutoff = 1.42246 219s binsize = 0.71123, bins = 37 32 1 219s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 219s (1) pair lj/cut, perpetual 219s attributes: half, newton on 219s pair build: half/bin/atomonly/newton 219s stencil: half/bin/2d 219s bin: standard 219s Setting up Verlet run ... 219s Unit style : lj 219s Current step : 0 219s Time step : 0.003 219s Per MPI rank memory allocation (min/avg/max) = 3.044 | 3.044 | 3.044 Mbytes 219s Step Temp E_pair E_mol TotEng Press Volume 219s 0 1 0 0 0.71190476 0.52314537 571.54286 219s 500 1.0758737 -0.36090417 0 0.40501541 2.7822308 575.0659 219s 1000 1 -0.35701441 0 0.35489035 2.0575313 585.71407 219s 1500 1.2368663 -0.37709732 0 0.50343367 1.4865879 587.193 219s 2000 1 -0.39362939 0 0.31827537 1.4236 578.9418 219s 2500 1.2272957 -0.42381901 0 0.44989865 1.4544608 570.15856 219s 3000 1 -0.4914342 0 0.22047056 1.534595 554.98633 219s 3500 1.2444794 -0.59760758 0 0.2883432 1.8754993 537.01599 219s 4000 1 -0.69890444 0 0.013000318 2.1406234 521.49815 219s 4500 1.2188346 -0.74991278 0 0.1177814 2.7508733 507.73977 219s 5000 1 -0.7445329 0 -0.032628135 3.1054873 501.68859 219s 5500 1.1836415 -0.76775125 0 0.074888789 2.6990153 506.01181 219s 6000 1 -0.7575268 0 -0.04562204 2.4858442 508.26846 219s 6500 1.2076032 -0.68884147 0 0.17085699 2.3143206 512.291 219s 7000 1 -0.66241571 0 0.049489051 2.0686009 516.38744 219s 7500 1.2123711 -0.71994819 0 0.14314459 2.1753937 513.88371 219s 8000 1 -0.71001477 0 0.0018899921 2.0630419 509.80458 219s 8500 1.1991563 -0.78355267 0 0.070132412 2.493712 504.22835 220s 9000 1 -0.72719051 0 -0.015285749 2.27793 505.75742 220s 9500 1.2073739 -0.76518329 0 0.094351911 2.5653732 503.29071 220s 10000 1 -0.78638614 0 -0.074481378 2.3564468 504.38491 220s Loop time of 0.18945 on 2 procs for 10000 steps with 420 atoms 220s 220s Performance: 13681705.231 tau/day, 52784.357 timesteps/s, 22.169 Matom-step/s 220s 97.1% CPU use with 2 MPI tasks x 1 OpenMP threads 220s 220s MPI task timing breakdown: 220s Section | min time | avg time | max time |%varavg| %total 220s --------------------------------------------------------------- 220s Pair | 0.038226 | 0.038554 | 0.038882 | 0.2 | 20.35 220s Neigh | 0.011552 | 0.011733 | 0.011914 | 0.2 | 6.19 220s Comm | 0.063748 | 0.063895 | 0.064042 | 0.1 | 33.73 220s Output | 0.00034644 | 0.00089486 | 0.0014433 | 0.0 | 0.47 220s Modify | 0.057357 | 0.057403 | 0.057449 | 0.0 | 30.30 220s Other | | 0.01697 | | | 8.96 220s 220s Nlocal: 210 ave 211 max 209 min 220s Histogram: 1 0 0 0 0 0 0 0 0 1 220s Nghost: 50 ave 51 max 49 min 220s Histogram: 1 0 0 0 0 0 0 0 0 1 220s Neighs: 563.5 ave 569 max 558 min 220s Histogram: 1 0 0 0 0 0 0 0 0 1 220s 220s Total # of neighbors = 1127 220s Ave neighs/atom = 2.6833333 220s Neighbor list builds = 560 220s Dangerous builds = 0 220s Total wall time: 0:00:00 220s LAMMPS (4 Feb 2025) 220s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 220s using 1 OpenMP thread(s) per MPI task 220s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 220s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 220s 1 by 1 by 1 MPI processor grid 220s Created 420 atoms 220s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 220s create_atoms CPU = 0.000 seconds 220s 60 atoms in group lower 220s 60 atoms in group upper 220s 120 atoms in group boundary 220s 300 atoms in group flow 220s Setting atom values ... 220s 60 settings made for type 220s Setting atom values ... 220s 60 settings made for type 220s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:551) 220s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 220s Neighbor list info ... 220s update: every = 1 steps, delay = 5 steps, check = yes 220s max neighbors/atom: 2000, page size: 100000 220s master list distance cutoff = 1.42246 220s ghost atom cutoff = 1.42246 220s binsize = 0.71123, bins = 37 32 1 220s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 220s (1) pair lj/cut, perpetual 220s attributes: half, newton on 220s pair build: half/bin/atomonly/newton 220s stencil: half/bin/2d 220s bin: standard 220s Setting up Verlet run ... 220s Unit style : lj 220s Current step : 0 220s Time step : 0.003 220s Per MPI rank memory allocation (min/avg/max) = 3.048 | 3.048 | 3.048 Mbytes 220s Step Temp E_pair E_mol TotEng Press Volume 220s 0 1 0 0 0.71190476 0.52314537 571.54286 220s 500 1.0990751 -0.36396768 0 0.41846911 2.522517 575.55806 220s 1000 1 -0.34609791 0 0.36580685 1.9736175 584.67179 220s 1500 1.2112861 -0.39062708 0 0.47169327 1.521881 587.24778 220s 2000 1 -0.39956949 0 0.31233527 1.2496669 583.00676 220s 2500 1.2236323 -0.40128447 0 0.46982521 1.427689 570.03729 220s 3000 1 -0.48849374 0 0.22341102 1.5091345 553.64637 220s 3500 1.2404604 -0.63017693 0 0.25291274 1.7681156 535.22588 220s 4000 1 -0.71303348 0 -0.001128721 2.2083475 516.7312 220s 4500 1.2316246 -0.77421749 0 0.10258194 2.5788522 503.1817 220s 5000 1 -0.7999552 0 -0.088050433 3.1546066 498.48431 220s 5500 1.2347442 -0.74592478 0 0.13309548 2.695455 502.87799 220s 6000 1 -0.67044678 0 0.041457981 2.2074541 513.82275 220s 6500 1.2102356 -0.63751404 0 0.22405846 1.9921588 517.21223 220s 7000 1 -0.65043667 0 0.061468095 1.8816222 517.22883 220s 7500 1.2366099 -0.68011129 0 0.20023717 2.0387578 515.33777 220s 8000 1 -0.72046833 0 -0.0085635721 2.1380846 510.42066 220s 8500 1.2219154 -0.79786917 0 0.072018214 2.2824348 503.99311 220s 9000 1 -0.78517366 0 -0.073268895 2.6920699 500.15016 220s 9500 1.1934208 -0.7468438 0 0.10275813 2.4971524 501.17896 220s 10000 1 -0.67478993 0 0.037114833 2.3681765 504.37054 220s Loop time of 0.213044 on 1 procs for 10000 steps with 420 atoms 220s 220s Performance: 12166522.803 tau/day, 46938.745 timesteps/s, 19.714 Matom-step/s 220s 99.2% CPU use with 1 MPI tasks x 1 OpenMP threads 220s 220s MPI task timing breakdown: 220s Section | min time | avg time | max time |%varavg| %total 220s --------------------------------------------------------------- 220s Pair | 0.076837 | 0.076837 | 0.076837 | 0.0 | 36.07 220s Neigh | 0.022572 | 0.022572 | 0.022572 | 0.0 | 10.60 220s Comm | 0.0052487 | 0.0052487 | 0.0052487 | 0.0 | 2.46 220s Output | 0.00031612 | 0.00031612 | 0.00031612 | 0.0 | 0.15 220s Modify | 0.092933 | 0.092933 | 0.092933 | 0.0 | 43.62 220s Other | | 0.01514 | | | 7.10 220s 220s Nlocal: 420 ave 420 max 420 min 220s Histogram: 1 0 0 0 0 0 0 0 0 0 220s Nghost: 51 ave 51 max 51 min 220s Histogram: 1 0 0 0 0 0 0 0 0 0 220s Neighs: 1150 ave 1150 max 1150 min 220s Histogram: 1 0 0 0 0 0 0 0 0 0 220s 220s Total # of neighbors = 1150 220s Ave neighs/atom = 2.7380952 220s Neighbor list builds = 563 220s Dangerous builds = 0 220s Total wall time: 0:00:00 220s run: OK 220s autopkgtest [18:41:42]: test flow: -----------------------] 221s autopkgtest [18:41:43]: test flow: - - - - - - - - - - results - - - - - - - - - - 221s flow PASS 221s autopkgtest [18:41:43]: test friction: preparing testbed 221s Reading package lists... 222s Building dependency tree... 222s Reading state information... 222s Solving dependencies... 222s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 223s autopkgtest [18:41:45]: test friction: [----------------------- 224s LAMMPS (4 Feb 2025) 224s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 224s using 1 OpenMP thread(s) per MPI task 224s Lattice spacing in x,y,z = 1.1326962 1.9618873 1.1326962 224s Created orthogonal box = (0 0 -0.28317404) to (56.634808 43.161521 0.28317404) 224s 2 by 1 by 1 MPI processor grid 224s Created 750 atoms 224s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 224s create_atoms CPU = 0.000 seconds 224s Created 750 atoms 224s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 224s create_atoms CPU = 0.000 seconds 224s Created 112 atoms 224s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 224s create_atoms CPU = 0.000 seconds 224s Created 112 atoms 224s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 224s create_atoms CPU = 0.000 seconds 224s 750 atoms in group lo 224s 862 atoms in group lo 224s 750 atoms in group hi 224s 862 atoms in group hi 224s 150 atoms in group lo-fixed 224s 150 atoms in group hi-fixed 224s 300 atoms in group boundary 224s 1424 atoms in group mobile 224s Setting atom values ... 224s 150 settings made for type 224s Setting atom values ... 224s 150 settings made for type 224s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:551) 224s Generated 0 of 6 mixed pair_coeff terms from geometric mixing rule 224s Neighbor list info ... 224s update: every = 1 steps, delay = 5 steps, check = yes 224s max neighbors/atom: 2000, page size: 100000 224s master list distance cutoff = 2.8 224s ghost atom cutoff = 2.8 224s binsize = 1.4, bins = 41 31 1 224s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 224s (1) pair lj/cut, perpetual 224s attributes: half, newton on 224s pair build: half/bin/atomonly/newton 224s stencil: half/bin/2d 224s bin: standard 224s Setting up Verlet run ... 224s Unit style : lj 224s Current step : 0 224s Time step : 0.0025 224s Per MPI rank memory allocation (min/avg/max) = 3.05 | 3.05 | 3.05 Mbytes 224s Step Temp E_pair E_mol TotEng Press Volume 224s 0 0.1 -3.1333672 0 -3.0920969 -1.1437663 2444.9333 224s 1000 0.081091635 -3.0930924 0 -3.0596257 -0.030127914 2444.9333 224s 2000 0.082087761 -3.0850474 0 -3.0511696 -0.44306626 2444.9333 224s 3000 0.088948343 -3.08139 0 -3.0446807 -0.25586469 2444.9333 224s 4000 0.091186493 -3.0656845 0 -3.0280515 -0.10060397 2444.9333 224s 5000 0.10802896 -3.0566391 0 -3.0120553 -0.13618814 2444.9333 224s 6000 0.1 -3.0489246 0 -3.0076543 -0.20314788 2444.9333 224s 7000 0.11587085 -3.0413277 0 -2.9935075 -0.37543775 2444.9333 225s 8000 0.1 -3.029647 0 -2.9883767 -0.41884104 2444.9333 225s 9000 0.11588457 -3.0253422 0 -2.9775163 -0.43584065 2444.9333 225s 10000 0.1 -3.0293042 0 -2.9880339 -0.36809832 2444.9333 225s 11000 0.11830962 -3.029318 0 -2.9804913 -0.44710474 2444.9333 225s 12000 0.1 -3.0283785 0 -2.9871082 -0.20225766 2444.9333 225s 13000 0.11646107 -3.0351824 0 -2.9871185 -0.46506235 2444.9333 225s 14000 0.11264391 -3.0399048 0 -2.9934163 -0.23851225 2444.9333 225s 15000 0.11397557 -3.0400714 0 -2.9930333 -0.27494778 2444.9333 226s 16000 0.11527553 -3.0423634 0 -2.9947889 -0.27314794 2444.9333 226s 17000 0.11820003 -3.0419531 0 -2.9931715 -0.39533728 2444.9333 226s 18000 0.11165087 -3.0494285 0 -3.0033499 -0.25447692 2444.9333 226s 19000 0.11450729 -3.0488755 0 -3.0016179 -0.27183418 2444.9333 226s 20000 0.1090499 -3.0490281 0 -3.0040229 -0.39612969 2444.9333 226s Loop time of 2.47582 on 2 procs for 20000 steps with 1724 atoms 226s 226s Performance: 1744877.355 tau/day, 8078.136 timesteps/s, 13.927 Matom-step/s 226s 99.5% CPU use with 2 MPI tasks x 1 OpenMP threads 226s 226s MPI task timing breakdown: 226s Section | min time | avg time | max time |%varavg| %total 226s --------------------------------------------------------------- 226s Pair | 1.5984 | 1.7212 | 1.8441 | 9.4 | 69.52 226s Neigh | 0.099036 | 0.10999 | 0.12095 | 3.3 | 4.44 226s Comm | 0.20355 | 0.34053 | 0.47752 | 23.5 | 13.75 226s Output | 0.00038744 | 0.0015374 | 0.0026874 | 2.9 | 0.06 226s Modify | 0.19701 | 0.21177 | 0.22653 | 3.2 | 8.55 226s Other | | 0.09075 | | | 3.67 226s 226s Nlocal: 862 ave 874 max 850 min 226s Histogram: 1 0 0 0 0 0 0 0 0 1 226s Nghost: 165.5 ave 166 max 165 min 226s Histogram: 1 0 0 0 0 0 0 0 0 1 226s Neighs: 7198 ave 7283 max 7113 min 226s Histogram: 1 0 0 0 0 0 0 0 0 1 226s 226s Total # of neighbors = 14396 226s Ave neighs/atom = 8.350348 226s Neighbor list builds = 720 226s Dangerous builds = 0 226s Total wall time: 0:00:02 226s LAMMPS (4 Feb 2025) 230s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 230s using 1 OpenMP thread(s) per MPI task 230s Lattice spacing in x,y,z = 1.1326962 1.9618873 1.1326962 230s Created orthogonal box = (0 0 -0.28317404) to (56.634808 43.161521 0.28317404) 230s 1 by 1 by 1 MPI processor grid 230s Created 750 atoms 230s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 230s create_atoms CPU = 0.000 seconds 230s Created 750 atoms 230s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 230s create_atoms CPU = 0.000 seconds 230s Created 112 atoms 230s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 230s create_atoms CPU = 0.000 seconds 230s Created 112 atoms 230s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 230s create_atoms CPU = 0.000 seconds 230s 750 atoms in group lo 230s 862 atoms in group lo 230s 750 atoms in group hi 230s 862 atoms in group hi 230s 150 atoms in group lo-fixed 230s 150 atoms in group hi-fixed 230s 300 atoms in group boundary 230s 1424 atoms in group mobile 230s Setting atom values ... 230s 150 settings made for type 230s Setting atom values ... 230s 150 settings made for type 230s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:551) 230s Generated 0 of 6 mixed pair_coeff terms from geometric mixing rule 230s Neighbor list info ... 230s update: every = 1 steps, delay = 5 steps, check = yes 230s max neighbors/atom: 2000, page size: 100000 230s master list distance cutoff = 2.8 230s ghost atom cutoff = 2.8 230s binsize = 1.4, bins = 41 31 1 230s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 230s (1) pair lj/cut, perpetual 230s attributes: half, newton on 230s pair build: half/bin/atomonly/newton 230s stencil: half/bin/2d 230s bin: standard 230s Setting up Verlet run ... 230s Unit style : lj 230s Current step : 0 230s Time step : 0.0025 230s Per MPI rank memory allocation (min/avg/max) = 3.059 | 3.059 | 3.059 Mbytes 230s Step Temp E_pair E_mol TotEng Press Volume 230s 0 0.1 -3.1333672 0 -3.0920969 -1.1437663 2444.9333 230s 1000 0.1 -3.0915072 0 -3.0502369 0.0099866805 2444.9333 230s 2000 0.1 -3.0826007 0 -3.0413304 -0.41998885 2444.9333 230s 3000 0.08982505 -3.0757908 0 -3.0387197 -0.25244271 2444.9333 230s 4000 0.098727892 -3.0666371 0 -3.0258918 -0.25382683 2444.9333 230s 5000 0.11345478 -3.0506905 0 -3.0038674 -0.029177812 2444.9333 230s 6000 0.11386723 -3.0515296 0 -3.0045363 -0.32135016 2444.9333 230s 7000 0.11555642 -3.0379879 0 -2.9902974 -0.40431662 2444.9333 230s 8000 0.10658321 -3.036405 0 -2.9924178 -0.4572299 2444.9333 230s 9000 0.11648934 -3.0271687 0 -2.9790932 -0.45898613 2444.9333 230s 10000 0.10677611 -3.0303232 0 -2.9862564 -0.35269781 2444.9333 230s 11000 0.11746006 -3.0346344 0 -2.9861583 -0.46341365 2444.9333 230s 12000 0.112074 -3.036913 0 -2.9906597 -0.21768573 2444.9333 230s 13000 0.11249017 -3.0395382 0 -2.9931132 -0.44391864 2444.9333 230s 14000 0.11381248 -3.0362108 0 -2.9892401 -0.30885868 2444.9333 230s 15000 0.10964575 -3.0436265 0 -2.9983754 -0.26625672 2444.9333 230s 16000 0.10798733 -3.0460787 0 -3.001512 -0.27971711 2444.9333 230s 17000 0.11191725 -3.0455618 0 -2.9993732 -0.36993854 2444.9333 230s 18000 0.11418143 -3.0485595 0 -3.0014364 -0.24776847 2444.9333 230s 19000 0.11028213 -3.0473558 0 -3.001842 -0.30249398 2444.9333 230s 20000 0.11512925 -3.0504969 0 -3.0029827 -0.36022205 2444.9333 230s Loop time of 4.24285 on 1 procs for 20000 steps with 1724 atoms 230s 230s Performance: 1018184.533 tau/day, 4713.817 timesteps/s, 8.127 Matom-step/s 230s 99.8% CPU use with 1 MPI tasks x 1 OpenMP threads 230s 230s MPI task timing breakdown: 230s Section | min time | avg time | max time |%varavg| %total 230s --------------------------------------------------------------- 230s Pair | 3.4667 | 3.4667 | 3.4667 | 0.0 | 81.71 230s Neigh | 0.21028 | 0.21028 | 0.21028 | 0.0 | 4.96 230s Comm | 0.030325 | 0.030325 | 0.030325 | 0.0 | 0.71 230s Output | 0.0019496 | 0.0019496 | 0.0019496 | 0.0 | 0.05 230s Modify | 0.43033 | 0.43033 | 0.43033 | 0.0 | 10.14 230s Other | | 0.1033 | | | 2.44 230s 230s Nlocal: 1724 ave 1724 max 1724 min 230s Histogram: 1 0 0 0 0 0 0 0 0 0 230s Nghost: 145 ave 145 max 145 min 230s Histogram: 1 0 0 0 0 0 0 0 0 0 230s Neighs: 14397 ave 14397 max 14397 min 230s Histogram: 1 0 0 0 0 0 0 0 0 0 230s 230s Total # of neighbors = 14397 230s Ave neighs/atom = 8.3509281 230s Neighbor list builds = 723 230s Dangerous builds = 0 230s Total wall time: 0:00:04 230s run: OK 231s autopkgtest [18:41:53]: test friction: -----------------------] 231s friction PASS 231s autopkgtest [18:41:53]: test friction: - - - - - - - - - - results - - - - - - - - - - 232s autopkgtest [18:41:54]: test hugo: preparing testbed 232s Reading package lists... 232s Building dependency tree... 232s Reading state information... 232s Solving dependencies... 233s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 234s autopkgtest [18:41:56]: test hugo: [----------------------- 234s LAMMPS (4 Feb 2025) 234s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 234s using 1 OpenMP thread(s) per MPI task 234s Lattice spacing in x,y,z = 1.4142135 2 2 234s Created orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 234s 1 by 1 by 2 MPI processor grid 234s Created 1000 atoms 234s using lattice units in orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 234s create_atoms CPU = 0.001 seconds 234s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 234s Neighbor list info ... 234s update: every = 1 steps, delay = 0 steps, check = yes 234s max neighbors/atom: 2000, page size: 100000 234s master list distance cutoff = 1.8475372 234s ghost atom cutoff = 1.8475372 234s binsize = 0.92376862, bins = 8 11 11 234s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 234s (1) pair lj/cubic, perpetual 234s attributes: half, newton on 234s pair build: half/bin/atomonly/newton 234s stencil: half/bin/3d 234s bin: standard 234s Setting up cg style minimization ... 234s Unit style : lj 234s Current step : 0 234s WARNING: Energy due to 3 extra global DOFs will be included in minimizer energies 234s (src/min.cpp:219) 234s Per MPI rank memory allocation (min/avg/max) = 4.237 | 4.237 | 4.237 Mbytes 234s Step Temp PotEng TotEng Pxx Pyy Pzz Lx Ly Lz 234s 0 0 -6.2937536 -6.2937536 -2.7722424 -2.7722424 -2.7722424 7.0710677 9.9999999 9.9999999 234s 100 0 -6.3319014 -6.3319014 -0.75971257 -0.75971257 -0.75971257 7.0003571 9.8999999 9.8999999 234s 134 0 -6.3344253 -6.3344253 -4.2957391e-13 -4.6556764e-13 -4.6545223e-13 6.9780267 9.8684199 9.8684199 234s Loop time of 0.0410343 on 2 procs for 134 steps with 1000 atoms 234s 234s 95.5% CPU use with 2 MPI tasks x 1 OpenMP threads 234s 234s Minimization stats: 234s Stopping criterion = force tolerance 234s Energy initial, next-to-last, final = 234s -6.29375358358574 -6.33442531515467 -6.33442531515467 234s Force two-norm initial, final = 3395.2895 5.526433e-10 234s Force max component initial, final = 1960.2713 3.2059964e-10 234s Final line search alpha, max atom move = 1 3.2059964e-10 234s Iterations, force evaluations = 134 137 234s 234s MPI task timing breakdown: 234s Section | min time | avg time | max time |%varavg| %total 234s --------------------------------------------------------------- 234s Pair | 0.021226 | 0.023217 | 0.025208 | 1.3 | 56.58 234s Neigh | 0.0004202 | 0.00044558 | 0.00047096 | 0.0 | 1.09 234s Comm | 0.0064593 | 0.0084617 | 0.010464 | 2.2 | 20.62 234s Output | 2.04e-05 | 7.4239e-05 | 0.00012808 | 0.0 | 0.18 234s Modify | 0 | 0 | 0 | 0.0 | 0.00 234s Other | | 0.008836 | | | 21.53 234s 234s Nlocal: 500 ave 550 max 450 min 234s Histogram: 1 0 0 0 0 0 0 0 0 1 234s Nghost: 1214 ave 1264 max 1164 min 234s Histogram: 1 0 0 0 0 0 0 0 0 1 234s Neighs: 10500 ave 11550 max 9450 min 234s Histogram: 1 0 0 0 0 0 0 0 0 1 234s 234s Total # of neighbors = 21000 234s Ave neighs/atom = 21 234s Neighbor list builds = 1 234s Dangerous builds = 0 234s System init for write_restart ... 234s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 234s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 234s using 1 OpenMP thread(s) per MPI task 234s Reading restart file ... 234s restart file = 4 Feb 2025, LAMMPS = 4 Feb 2025 234s restoring atom style atomic from restart 234s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 234s 1 by 1 by 2 MPI processor grid 234s restoring pair style lj/cubic from restart 234s 1000 atoms 234s read_restart CPU = 0.001 seconds 234s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 234s Neighbor list info ... 234s update: every = 1 steps, delay = 0 steps, check = yes 234s max neighbors/atom: 2000, page size: 100000 234s master list distance cutoff = 1.7475372 234s ghost atom cutoff = 1.7475372 234s binsize = 0.87376862, bins = 8 12 12 234s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 234s (1) pair lj/cubic, perpetual 234s attributes: half, newton on 234s pair build: half/bin/atomonly/newton 234s stencil: half/bin/3d 234s bin: standard 234s Setting up Verlet run ... 234s Unit style : lj 234s Current step : 0 234s Time step : 0.001 234s Per MPI rank memory allocation (min/avg/max) = 3.112 | 3.112 | 3.112 Mbytes 234s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 234s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014355329 -0.00025901829 9.8684199 0 -0.0048552721 2.3792932 0.0041071767 234s 1000 0.010266754 0.015384732 -2.1717334 -4183.9192 129.07798 58.489025 8.3141524 -4.1817628 0.9362044 23.511491 3.7372332 235s 2000 0.40259797 0.60329306 -5.627962 -1085.8312 12.843116 1.8560907 9.4470663 -1.0808065 -0.37219276 14.040385 0.6226867 235s 3000 0.47352764 0.70958118 -3.847268 -3270.82 65.659321 23.910002 8.6682025 -3.2676824 -0.14827512 19.052005 2.3460318 235s 4000 0.51027892 0.76465296 -4.3666607 -2668.4808 36.299422 5.4253511 8.7365217 -2.6648788 -0.43242827 14.580921 1.6947004 236s 5000 0.27107084 0.40619965 -4.8148544 -1808.6901 35.499158 7.8616668 8.7438741 -1.8042815 -0.17683868 14.465657 1.6705446 236s 6000 0.14589565 0.21862463 -4.1603429 -2363.5903 43.618418 5.9789884 8.3935297 -2.3596486 -0.050591412 14.026367 2.1169125 236s 7000 0.085822195 0.12860456 -4.2874019 -2281.4454 40.483746 3.874914 8.3489633 -2.2772866 -0.011160894 13.315551 2.0696635 237s 8000 0.039594243 0.059331974 -4.3555951 -2176.8532 39.840893 3.7201608 8.3381853 -2.1725569 0.028292259 13.163321 2.0603537 237s 9000 0.025376486 0.038026664 -4.2983996 -2330.0794 39.628092 2.631482 8.2935294 -2.3258191 0.032864503 12.942681 2.084285 237s 10000 0.020305022 0.030427075 -4.2090968 -1864.3718 42.005843 3.1326248 8.2404246 -1.8601931 0.074717463 13.108473 2.1814026 237s Loop time of 3.14336 on 2 procs for 10000 steps with 1000 atoms 237s 237s Performance: 274865.172 tau/day, 3181.310 timesteps/s, 3.181 Matom-step/s 237s 94.7% CPU use with 2 MPI tasks x 1 OpenMP threads 237s 237s MPI task timing breakdown: 237s Section | min time | avg time | max time |%varavg| %total 237s --------------------------------------------------------------- 237s Pair | 2.0855 | 2.1127 | 2.1399 | 1.9 | 67.21 237s Neigh | 0.091224 | 0.092404 | 0.093584 | 0.4 | 2.94 237s Comm | 0.42638 | 0.45267 | 0.47895 | 3.9 | 14.40 237s Output | 0.00054772 | 0.001082 | 0.0016163 | 1.6 | 0.03 237s Modify | 0.42871 | 0.43146 | 0.4342 | 0.4 | 13.73 237s Other | | 0.05307 | | | 1.69 237s 237s Nlocal: 500 ave 509 max 491 min 237s Histogram: 1 0 0 0 0 0 0 0 0 1 237s Nghost: 1346.5 ave 1369 max 1324 min 237s Histogram: 1 0 0 0 0 0 0 0 0 1 237s Neighs: 10311.5 ave 10391 max 10232 min 237s Histogram: 1 0 0 0 0 0 0 0 0 1 237s 237s Total # of neighbors = 20623 237s Ave neighs/atom = 20.623 237s Neighbor list builds = 205 237s Dangerous builds = 0 237s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 237s using 1 OpenMP thread(s) per MPI task 237s Reading restart file ... 237s restart file = 4 Feb 2025, LAMMPS = 4 Feb 2025 237s restoring atom style atomic from restart 237s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 237s 1 by 1 by 2 MPI processor grid 237s restoring pair style lj/cubic from restart 237s 1000 atoms 237s read_restart CPU = 0.001 seconds 237s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 237s Neighbor list info ... 237s update: every = 1 steps, delay = 0 steps, check = yes 237s max neighbors/atom: 2000, page size: 100000 237s master list distance cutoff = 1.7475372 237s ghost atom cutoff = 1.7475372 237s binsize = 0.87376862, bins = 8 12 12 237s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 237s (1) pair lj/cubic, perpetual 237s attributes: half, newton on 237s pair build: half/bin/atomonly/newton 237s stencil: half/bin/3d 237s bin: standard 237s Setting up Verlet run ... 237s Unit style : lj 237s Current step : 0 237s Time step : 0.001 237s Per MPI rank memory allocation (min/avg/max) = 3.112 | 3.112 | 3.112 Mbytes 237s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 237s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014355329 -0.00025901829 9.8684199 0 -0.0048552721 2.3792932 0.0041071767 237s 1000 0.0062790167 0.0094091065 -5.989181 -1670.9917 18.916499 7.5833446 9.2337867 -1.6650119 0.023434204 13.976079 0.92136905 238s 2000 0.0066373266 0.0099460339 -5.4562974 -2537.9609 37.066673 15.536927 8.9495838 -2.5325146 0.10236546 16.325445 1.5455989 238s 3000 0.006890427 0.010325305 -5.3657707 -2643.943 39.911802 16.807453 8.9154493 -2.6385876 0.11827588 16.639682 1.6328058 238s 4000 0.0073314031 0.010986107 -5.3630545 -2655.872 40.003435 16.849611 8.9144058 -2.6505199 0.11864983 16.649819 1.6355581 238s 5000 0.0075004567 0.011239434 -5.3630119 -2664.6029 39.9983 16.845885 8.9144863 -2.6592512 0.11845678 16.649441 1.6353853 239s 6000 0.0078159402 0.011712186 -5.3629866 -2673.5606 39.999501 16.84634 8.9144972 -2.6682093 0.11829898 16.649784 1.6354006 239s 7000 0.0078365866 0.011743125 -5.3625076 -2682.4138 40.001112 16.844623 8.9145083 -2.6770631 0.11814173 16.650214 1.6354243 239s 8000 0.0075482436 0.011311043 -5.3616205 -2690.9824 39.996485 16.835974 8.9145436 -2.6856321 0.11792207 16.649554 1.6352999 240s 9000 0.0083133885 0.012457613 -5.362258 -2700.1342 39.99904 16.841287 8.9145642 -2.6947844 0.11777124 16.650263 1.6353348 240s 10000 0.0086355586 0.012940385 -5.3622381 -2709.0315 39.997759 16.839976 8.9145913 -2.7036822 0.11757678 16.650228 1.6352858 240s Loop time of 2.64498 on 2 procs for 10000 steps with 1000 atoms 240s 240s Performance: 326656.645 tau/day, 3780.748 timesteps/s, 3.781 Matom-step/s 240s 93.2% CPU use with 2 MPI tasks x 1 OpenMP threads 240s 240s MPI task timing breakdown: 240s Section | min time | avg time | max time |%varavg| %total 240s --------------------------------------------------------------- 240s Pair | 1.8104 | 1.8331 | 1.8559 | 1.7 | 69.31 240s Neigh | 0.0044292 | 0.0044421 | 0.004455 | 0.0 | 0.17 240s Comm | 0.32803 | 0.35027 | 0.3725 | 3.8 | 13.24 240s Output | 0.00053768 | 0.001506 | 0.0024743 | 2.5 | 0.06 240s Modify | 0.40834 | 0.41013 | 0.41192 | 0.3 | 15.51 240s Other | | 0.0455 | | | 1.72 240s 240s Nlocal: 500 ave 508 max 492 min 240s Histogram: 1 0 0 0 0 0 0 0 0 1 240s Nghost: 1214 ave 1222 max 1206 min 240s Histogram: 1 0 0 0 0 0 0 0 0 1 240s Neighs: 10500 ave 10668 max 10332 min 240s Histogram: 1 0 0 0 0 0 0 0 0 1 240s 240s Total # of neighbors = 21000 240s Ave neighs/atom = 21 240s Neighbor list builds = 10 240s Dangerous builds = 0 240s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 240s using 1 OpenMP thread(s) per MPI task 240s Reading restart file ... 240s restart file = 4 Feb 2025, LAMMPS = 4 Feb 2025 240s restoring atom style atomic from restart 240s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 240s 1 by 1 by 2 MPI processor grid 240s restoring pair style lj/cubic from restart 240s 1000 atoms 240s read_restart CPU = 0.001 seconds 240s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 240s Neighbor list info ... 240s update: every = 1 steps, delay = 0 steps, check = yes 240s max neighbors/atom: 2000, page size: 100000 240s master list distance cutoff = 1.7475372 240s ghost atom cutoff = 1.7475372 240s binsize = 0.87376862, bins = 8 12 12 240s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 240s (1) pair lj/cubic, perpetual 240s attributes: half, newton on 240s pair build: half/bin/atomonly/newton 240s stencil: half/bin/3d 240s bin: standard 240s Setting up Verlet run ... 240s Unit style : lj 240s Current step : 0 240s Time step : 0.001 240s Per MPI rank memory allocation (min/avg/max) = 3.112 | 3.112 | 3.112 Mbytes 240s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 240s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014355329 -0.00025901829 9.8684199 0 -0.0048552721 2.3792932 0.0041071767 240s 1000 0.0079519127 0.011915941 -5.50188 -838.80672 35.61641 14.888864 8.9677618 -0.83331675 0.093886135 16.160598 1.5002751 240s 2000 0.019411054 0.029087464 -5.2936665 -1019.5497 41.77353 17.564044 8.8958463 -1.0142851 0.11811209 16.853902 1.687248 241s 3000 0.047492482 0.071167484 -5.3441861 -971.66654 39.02349 16.097707 8.9321705 -0.96639352 0.073376741 16.597136 1.600557 241s 4000 0.12096417 0.18126481 -5.2102393 -1315.5664 40.846153 16.436163 8.9200987 -1.3105374 0.017574117 16.873813 1.6478442 241s 5000 0.1272463 0.19067858 -5.2517864 -1192.2753 39.105833 15.560562 8.9406854 -1.1872142 -0.00025457398 16.689339 1.5950732 241s 6000 0.14515651 0.21751704 -5.1820215 -1372.0064 40.682715 16.119979 8.9220924 -1.3670419 -0.0066818447 16.857436 1.6428451 242s 7000 0.12286771 0.18411727 -5.2596973 -1200.0518 39.255412 15.703071 8.938111 -1.1949762 0.0073588891 16.698492 1.6002966 242s 8000 0.1428801 0.21410583 -5.1748689 -1340.8702 40.704199 16.116121 8.9238602 -1.3359094 -0.0085191302 16.877378 1.6417704 242s 9000 0.12012635 0.18000933 -5.2541332 -1187.2981 39.322347 15.708304 8.9368444 -1.182224 0.0081737382 16.701561 1.6027307 243s 10000 0.1485814 0.22264922 -5.184468 -1359.9408 40.542555 16.055637 8.9246711 -1.3549789 -0.010330357 16.85094 1.6378163 243s Loop time of 2.78142 on 2 procs for 10000 steps with 1000 atoms 243s 243s Performance: 310633.097 tau/day, 3595.290 timesteps/s, 3.595 Matom-step/s 243s 94.6% CPU use with 2 MPI tasks x 1 OpenMP threads 243s 243s MPI task timing breakdown: 243s Section | min time | avg time | max time |%varavg| %total 243s --------------------------------------------------------------- 243s Pair | 1.8658 | 1.8897 | 1.9136 | 1.7 | 67.94 243s Neigh | 0.043514 | 0.043607 | 0.0437 | 0.0 | 1.57 243s Comm | 0.34851 | 0.37125 | 0.39399 | 3.7 | 13.35 243s Output | 0.0005714 | 0.0016766 | 0.0027819 | 2.7 | 0.06 243s Modify | 0.4251 | 0.42669 | 0.42828 | 0.2 | 15.34 243s Other | | 0.04849 | | | 1.74 243s 243s Nlocal: 500 ave 510 max 490 min 243s Histogram: 1 0 0 0 0 0 0 0 0 1 243s Nghost: 1216.5 ave 1227 max 1206 min 243s Histogram: 1 0 0 0 0 0 0 0 0 1 243s Neighs: 10311 ave 10520 max 10102 min 243s Histogram: 1 0 0 0 0 0 0 0 0 1 243s 243s Total # of neighbors = 20622 243s Ave neighs/atom = 20.622 243s Neighbor list builds = 95 243s Dangerous builds = 0 243s Total wall time: 0:00:08 243s LAMMPS (4 Feb 2025) 243s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 243s using 1 OpenMP thread(s) per MPI task 243s Lattice spacing in x,y,z = 1.4142135 2 2 243s Created orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 243s 1 by 1 by 1 MPI processor grid 243s Created 1000 atoms 243s using lattice units in orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 243s create_atoms CPU = 0.000 seconds 243s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 243s Neighbor list info ... 243s update: every = 1 steps, delay = 0 steps, check = yes 243s max neighbors/atom: 2000, page size: 100000 243s master list distance cutoff = 1.8475372 243s ghost atom cutoff = 1.8475372 243s binsize = 0.92376862, bins = 8 11 11 243s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 243s (1) pair lj/cubic, perpetual 243s attributes: half, newton on 243s pair build: half/bin/atomonly/newton 243s stencil: half/bin/3d 243s bin: standard 243s Setting up cg style minimization ... 243s Unit style : lj 243s Current step : 0 243s WARNING: Energy due to 3 extra global DOFs will be included in minimizer energies 243s (src/min.cpp:219) 243s Per MPI rank memory allocation (min/avg/max) = 4.247 | 4.247 | 4.247 Mbytes 243s Step Temp PotEng TotEng Pxx Pyy Pzz Lx Ly Lz 243s 0 0 -6.2937536 -6.2937536 -2.7722424 -2.7722424 -2.7722424 7.0710677 9.9999999 9.9999999 243s 100 0 -6.3319014 -6.3319014 -0.75971257 -0.75971257 -0.75971257 7.0003571 9.8999999 9.8999999 243s 134 0 -6.3344253 -6.3344253 -4.3566216e-13 -4.7438184e-13 -4.6860149e-13 6.9780267 9.8684199 9.8684199 243s Loop time of 0.054693 on 1 procs for 134 steps with 1000 atoms 243s 243s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads 243s 243s Minimization stats: 243s Stopping criterion = force tolerance 243s Energy initial, next-to-last, final = 243s -6.29375358358556 -6.33442531515503 -6.33442531515503 243s Force two-norm initial, final = 3395.2895 5.6047601e-10 243s Force max component initial, final = 1960.2713 3.2666928e-10 243s Final line search alpha, max atom move = 1 3.2666928e-10 243s Iterations, force evaluations = 134 137 243s 243s MPI task timing breakdown: 243s Section | min time | avg time | max time |%varavg| %total 243s --------------------------------------------------------------- 243s Pair | 0.043638 | 0.043638 | 0.043638 | 0.0 | 79.79 243s Neigh | 0.00082888 | 0.00082888 | 0.00082888 | 0.0 | 1.52 243s Comm | 0.0013788 | 0.0013788 | 0.0013788 | 0.0 | 2.52 243s Output | 2.292e-05 | 2.292e-05 | 2.292e-05 | 0.0 | 0.04 243s Modify | 0 | 0 | 0 | 0.0 | 0.00 243s Other | | 0.008825 | | | 16.14 243s 243s Nlocal: 1000 ave 1000 max 1000 min 243s Histogram: 1 0 0 0 0 0 0 0 0 0 243s Nghost: 1724 ave 1724 max 1724 min 243s Histogram: 1 0 0 0 0 0 0 0 0 0 243s Neighs: 21000 ave 21000 max 21000 min 243s Histogram: 1 0 0 0 0 0 0 0 0 0 243s 243s Total # of neighbors = 21000 243s Ave neighs/atom = 21 243s Neighbor list builds = 1 243s Dangerous builds = 0 243s System init for write_restart ... 243s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 243s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 243s using 1 OpenMP thread(s) per MPI task 243s Reading restart file ... 243s restart file = 4 Feb 2025, LAMMPS = 4 Feb 2025 243s restoring atom style atomic from restart 243s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 243s 1 by 1 by 1 MPI processor grid 243s restoring pair style lj/cubic from restart 243s 1000 atoms 243s read_restart CPU = 0.000 seconds 243s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 243s Neighbor list info ... 243s update: every = 1 steps, delay = 0 steps, check = yes 243s max neighbors/atom: 2000, page size: 100000 243s master list distance cutoff = 1.7475372 243s ghost atom cutoff = 1.7475372 243s binsize = 0.87376862, bins = 8 12 12 243s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 248s (1) pair lj/cubic, perpetual 248s attributes: half, newton on 248s pair build: half/bin/atomonly/newton 248s stencil: half/bin/3d 248s bin: standard 248s Setting up Verlet run ... 248s Unit style : lj 248s Current step : 0 248s Time step : 0.001 248s Per MPI rank memory allocation (min/avg/max) = 3.124 | 3.124 | 3.124 Mbytes 248s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 248s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014381062 -0.00023971829 9.8684199 0 -0.004855267 2.3814248 0.0041108563 248s 1000 0.0093381492 0.013993217 -2.1704431 -4183.8284 129.15284 58.544409 8.3142517 -4.1816719 0.93744212 23.519052 3.7381985 248s 2000 0.24794859 0.37155095 -5.8915826 -528.38691 8.3849811 1.3744297 9.5938806 -0.52286688 -0.24350394 13.910493 0.41033425 248s 3000 0.3892042 0.5832225 -3.7686896 -3442.3257 72.742382 28.486576 8.6238082 -3.4391402 0.0038227739 19.697354 2.5139569 248s 4000 0.67010303 1.0041494 -4.2080956 -2935.8105 35.596234 3.9346859 8.7508489 -2.9326065 -0.58038927 14.529876 1.6677093 248s 5000 0.41845028 0.62704774 -4.8392822 -1894.6664 30.624319 4.6370699 8.7827304 -1.8904542 -0.31998377 13.670423 1.5249748 248s 6000 0.22409652 0.33580864 -3.7653422 -2666.4156 50.804071 7.220865 8.25496 -2.6629861 -0.017448126 14.48017 2.3883779 248s 7000 0.094832865 0.14210705 -4.5432169 -2337.0271 35.853414 3.4750842 8.4475655 -2.332626 -0.052659777 12.95347 1.8841809 248s 8000 0.043338745 0.06494311 -4.6249402 -1687.4892 39.679004 6.7256868 8.4321684 -1.6829292 0.070571417 13.554654 1.9927395 248s 9000 0.018233343 0.027322664 -4.425909 -1916.4941 41.680023 5.9079935 8.3470382 -1.9120955 0.090887676 13.502397 2.1013348 248s 10000 0.0082616415 0.01238007 -4.6221264 -1723.6542 39.842157 6.5678795 8.41093 -1.7190444 0.099616538 13.484322 2.0113699 248s Loop time of 5.05683 on 1 procs for 10000 steps with 1000 atoms 248s 248s Performance: 170857.999 tau/day, 1977.523 timesteps/s, 1.978 Matom-step/s 248s 99.3% CPU use with 1 MPI tasks x 1 OpenMP threads 248s 248s MPI task timing breakdown: 248s Section | min time | avg time | max time |%varavg| %total 248s --------------------------------------------------------------- 248s Pair | 4.1495 | 4.1495 | 4.1495 | 0.0 | 82.06 248s Neigh | 0.16553 | 0.16553 | 0.16553 | 0.0 | 3.27 248s Comm | 0.096281 | 0.096281 | 0.096281 | 0.0 | 1.90 248s Output | 0.00048352 | 0.00048352 | 0.00048352 | 0.0 | 0.01 248s Modify | 0.60269 | 0.60269 | 0.60269 | 0.0 | 11.92 248s Other | | 0.04235 | | | 0.84 248s 248s Nlocal: 1000 ave 1000 max 1000 min 248s Histogram: 1 0 0 0 0 0 0 0 0 0 248s Nghost: 1886 ave 1886 max 1886 min 248s Histogram: 1 0 0 0 0 0 0 0 0 0 248s Neighs: 20874 ave 20874 max 20874 min 248s Histogram: 1 0 0 0 0 0 0 0 0 0 248s 248s Total # of neighbors = 20874 248s Ave neighs/atom = 20.874 248s Neighbor list builds = 188 248s Dangerous builds = 0 248s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 248s using 1 OpenMP thread(s) per MPI task 248s Reading restart file ... 248s restart file = 4 Feb 2025, LAMMPS = 4 Feb 2025 248s restoring atom style atomic from restart 248s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 248s 1 by 1 by 1 MPI processor grid 248s restoring pair style lj/cubic from restart 248s 1000 atoms 248s read_restart CPU = 0.001 seconds 248s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 248s Neighbor list info ... 252s update: every = 1 steps, delay = 0 steps, check = yes 252s max neighbors/atom: 2000, page size: 100000 252s master list distance cutoff = 1.7475372 252s ghost atom cutoff = 1.7475372 252s binsize = 0.87376862, bins = 8 12 12 252s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 252s (1) pair lj/cubic, perpetual 252s attributes: half, newton on 252s pair build: half/bin/atomonly/newton 252s stencil: half/bin/3d 252s bin: standard 252s Setting up Verlet run ... 252s Unit style : lj 252s Current step : 0 252s Time step : 0.001 252s Per MPI rank memory allocation (min/avg/max) = 3.124 | 3.124 | 3.124 Mbytes 252s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 252s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014381062 -0.00023971829 9.8684199 0 -0.004855267 2.3814248 0.0041108563 252s 1000 0.0062572988 0.0093765623 -5.989087 -1670.9191 18.918118 7.5844401 9.2338165 -1.6649394 0.023419337 13.976997 0.92138738 252s 2000 0.0068451081 0.010257394 -5.456581 -2537.81 37.064253 15.537266 8.9496405 -2.5323637 0.10230605 16.325406 1.5455016 252s 3000 0.0073276099 0.010980423 -5.3663421 -2643.8751 39.907292 16.807489 8.9154852 -2.6385198 0.11818116 16.63905 1.6326832 252s 4000 0.0069296906 0.010384141 -5.36234 -2655.7228 40.010742 16.851482 8.9144328 -2.6503709 0.11868137 16.651571 1.6356847 252s 5000 0.0076142461 0.011409948 -5.3631443 -2664.4499 39.997648 16.846756 8.9145416 -2.6590982 0.1184114 16.649779 1.6353254 252s 6000 0.0077053831 0.011546517 -5.3628538 -2673.2444 39.991598 16.840314 8.9145803 -2.667893 0.11818361 16.648852 1.6351691 252s 7000 0.0077405663 0.011599239 -5.3623531 -2682.1589 40.000448 16.844009 8.9145774 -2.6768081 0.11809899 16.650669 1.6353525 252s 8000 0.0080673569 0.012088934 -5.3623755 -2691.0104 39.995327 16.840134 8.9146099 -2.6856601 0.11787103 16.649882 1.6352204 252s 9000 0.0083223083 0.012470979 -5.3622988 -2699.8929 40.00571 16.847764 8.9146503 -2.6945431 0.11781523 16.652389 1.6353987 252s 10000 0.0091249116 0.01367368 -5.3630138 -2708.966 39.987197 16.837314 8.9146848 -2.7036167 0.11743014 16.648832 1.6349911 252s Loop time of 4.4569 on 1 procs for 10000 steps with 1000 atoms 252s 252s Performance: 193856.847 tau/day, 2243.714 timesteps/s, 2.244 Matom-step/s 252s 99.1% CPU use with 1 MPI tasks x 1 OpenMP threads 252s 252s MPI task timing breakdown: 252s Section | min time | avg time | max time |%varavg| %total 252s --------------------------------------------------------------- 252s Pair | 3.7108 | 3.7108 | 3.7108 | 0.0 | 83.26 252s Neigh | 0.0096421 | 0.0096421 | 0.0096421 | 0.0 | 0.22 252s Comm | 0.085788 | 0.085788 | 0.085788 | 0.0 | 1.92 252s Output | 0.00075312 | 0.00075312 | 0.00075312 | 0.0 | 0.02 252s Modify | 0.61106 | 0.61106 | 0.61106 | 0.0 | 13.71 252s Other | | 0.03884 | | | 0.87 252s 252s Nlocal: 1000 ave 1000 max 1000 min 252s Histogram: 1 0 0 0 0 0 0 0 0 0 252s Nghost: 1724 ave 1724 max 1724 min 252s Histogram: 1 0 0 0 0 0 0 0 0 0 252s Neighs: 21000 ave 21000 max 21000 min 252s Histogram: 1 0 0 0 0 0 0 0 0 0 252s 252s Total # of neighbors = 21000 252s Ave neighs/atom = 21 252s Neighbor list builds = 11 252s Dangerous builds = 0 252s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 252s using 1 OpenMP thread(s) per MPI task 252s Reading restart file ... 252s restart file = 4 Feb 2025, LAMMPS = 4 Feb 2025 252s restoring atom style atomic from restart 257s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 257s 1 by 1 by 1 MPI processor grid 257s restoring pair style lj/cubic from restart 257s 1000 atoms 257s read_restart CPU = 0.002 seconds 257s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 257s Neighbor list info ... 257s update: every = 1 steps, delay = 0 steps, check = yes 257s max neighbors/atom: 2000, page size: 100000 257s master list distance cutoff = 1.7475372 257s ghost atom cutoff = 1.7475372 257s binsize = 0.87376862, bins = 8 12 12 257s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 257s (1) pair lj/cubic, perpetual 257s attributes: half, newton on 257s pair build: half/bin/atomonly/newton 257s stencil: half/bin/3d 257s bin: standard 257s Setting up Verlet run ... 257s Unit style : lj 257s Current step : 0 257s Time step : 0.001 257s Per MPI rank memory allocation (min/avg/max) = 3.124 | 3.124 | 3.124 Mbytes 257s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 257s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014381062 -0.00023971829 9.8684199 0 -0.004855267 2.3814248 0.0041108563 257s 1000 0.0083300318 0.012482553 -5.5023183 -838.99233 35.610078 14.886668 8.9677982 -0.83350249 0.093761717 16.159482 1.500112 257s 2000 0.020386436 0.030549075 -5.294934 -1021.4347 41.760404 17.563313 8.8960328 -1.0161703 0.1178086 16.852842 1.6868239 257s 3000 0.049693082 0.074465084 -5.3469418 -982.1922 39.030412 16.123502 8.9325589 -0.97691972 0.073097533 16.601991 1.6003728 257s 4000 0.11859524 0.17771497 -5.207074 -1299.948 40.941639 16.507821 8.9213137 -1.2949186 0.018189971 16.904165 1.6487306 257s 5000 0.130146 0.19502378 -5.261025 -1208.3405 39.059595 15.609328 8.9431689 -1.2032745 -0.00023811036 16.701434 1.5920334 257s 6000 0.13812959 0.20698719 -5.1710048 -1334.1421 40.904888 16.242199 8.9222846 -1.329178 -0.0044756362 16.90509 1.6471606 257s 7000 0.12107441 0.18143001 -5.2602562 -1170.0585 39.060849 15.577606 8.9397535 -1.1649797 0.005587398 16.671517 1.5949415 257s 8000 0.14333426 0.21478639 -5.1717109 -1352.635 40.876285 16.205871 8.9218128 -1.3476781 -0.0069373292 16.895041 1.6469877 257s 9000 0.12159783 0.18221435 -5.2591928 -1186.8604 39.22852 15.6778 8.9376658 -1.1817834 0.0077335044 16.68885 1.6001243 257s 10000 0.15321647 0.22959488 -5.188176 -1391.2245 40.666599 16.146259 8.9228489 -1.3862659 -0.0091900905 16.860718 1.6418747 257s Loop time of 4.59389 on 1 procs for 10000 steps with 1000 atoms 257s 257s Performance: 188075.959 tau/day, 2176.805 timesteps/s, 2.177 Matom-step/s 257s 99.2% CPU use with 1 MPI tasks x 1 OpenMP threads 257s 257s MPI task timing breakdown: 257s Section | min time | avg time | max time |%varavg| %total 257s --------------------------------------------------------------- 257s Pair | 3.7605 | 3.7605 | 3.7605 | 0.0 | 81.86 257s Neigh | 0.084914 | 0.084914 | 0.084914 | 0.0 | 1.85 257s Comm | 0.090919 | 0.090919 | 0.090919 | 0.0 | 1.98 257s Output | 0.00052468 | 0.00052468 | 0.00052468 | 0.0 | 0.01 257s Modify | 0.616 | 0.616 | 0.616 | 0.0 | 13.41 257s Other | | 0.04101 | | | 0.89 257s 257s Nlocal: 1000 ave 1000 max 1000 min 257s Histogram: 1 0 0 0 0 0 0 0 0 0 257s Nghost: 1724 ave 1724 max 1724 min 257s Histogram: 1 0 0 0 0 0 0 0 0 0 257s Neighs: 20654 ave 20654 max 20654 min 257s Histogram: 1 0 0 0 0 0 0 0 0 0 257s 257s Total # of neighbors = 20654 257s Ave neighs/atom = 20.654 257s Neighbor list builds = 94 257s Dangerous builds = 0 257s Total wall time: 0:00:14 257s run: OK 257s autopkgtest [18:42:19]: test hugo: -----------------------] 258s hugo PASS 258s autopkgtest [18:42:20]: test hugo: - - - - - - - - - - results - - - - - - - - - - 258s autopkgtest [18:42:20]: test command1: preparing testbed 282s Creating nova instance adt-resolute-arm64-lammps-20251018-183801-juju-7f2275-prod-proposed-migration-environment-2-f974c937-5922-4c00-92cb-3597064b74ff from image adt/ubuntu-resolute-arm64-server-20251018.img (UUID f7a49384-4e4d-4350-9a26-1f59236f89dd)... 345s autopkgtest [18:43:47]: testbed dpkg architecture: arm64 345s autopkgtest [18:43:47]: testbed apt version: 3.1.6ubuntu2 346s autopkgtest [18:43:48]: @@@@@@@@@@@@@@@@@@@@ test bed setup 346s autopkgtest [18:43:48]: testbed release detected to be: resolute 347s autopkgtest [18:43:49]: updating testbed package index (apt update) 347s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [83.3 kB] 347s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 348s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 348s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 348s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [456 kB] 348s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [50.7 kB] 348s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [5028 B] 348s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [16.7 kB] 348s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 Packages [99.7 kB] 348s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 Packages [43.8 kB] 348s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 Packages [322 kB] 348s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 Packages [6524 B] 348s Fetched 1083 kB in 1s (1059 kB/s) 350s Reading package lists... 350s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 351s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 351s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 351s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 352s Reading package lists... 352s Reading package lists... 352s Building dependency tree... 352s Reading state information... 353s Calculating upgrade... 354s The following packages will be upgraded: 354s apt flash-kernel gir1.2-girepository-2.0 libapt-pkg7.0 libgirepository-1.0-1 354s libpython3-stdlib lto-disabled-list python3 python3-minimal 354s 9 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 354s Need to get 2671 kB of archives. 354s After this operation, 66.6 kB of additional disk space will be used. 354s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 python3-minimal arm64 3.13.7-2 [27.8 kB] 354s Get:2 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 python3 arm64 3.13.7-2 [23.9 kB] 354s Get:3 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 libpython3-stdlib arm64 3.13.7-2 [10.6 kB] 354s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 libapt-pkg7.0 arm64 3.1.8ubuntu1 [1055 kB] 355s Get:5 http://ftpmaster.internal/ubuntu resolute/main arm64 apt arm64 3.1.8ubuntu1 [1373 kB] 355s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 libgirepository-1.0-1 arm64 1.86.0-6 [84.5 kB] 355s Get:7 http://ftpmaster.internal/ubuntu resolute/main arm64 gir1.2-girepository-2.0 arm64 1.86.0-6 [25.3 kB] 355s Get:8 http://ftpmaster.internal/ubuntu resolute/main arm64 flash-kernel arm64 3.109ubuntu7 [58.8 kB] 356s Get:9 http://ftpmaster.internal/ubuntu resolute/main arm64 lto-disabled-list all 71 [12.5 kB] 356s dpkg-preconfigure: unable to re-open stdin: No such file or directory 356s Fetched 2671 kB in 1s (1970 kB/s) 356s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83359 files and directories currently installed.) 356s Preparing to unpack .../python3-minimal_3.13.7-2_arm64.deb ... 356s Unpacking python3-minimal (3.13.7-2) over (3.13.7-1) ... 357s Setting up python3-minimal (3.13.7-2) ... 357s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83359 files and directories currently installed.) 357s Preparing to unpack .../0-python3_3.13.7-2_arm64.deb ... 357s running python pre-rtupdate hooks for python3.13... 357s Unpacking python3 (3.13.7-2) over (3.13.7-1) ... 357s Preparing to unpack .../1-libpython3-stdlib_3.13.7-2_arm64.deb ... 357s Unpacking libpython3-stdlib:arm64 (3.13.7-2) over (3.13.7-1) ... 357s Preparing to unpack .../2-libapt-pkg7.0_3.1.8ubuntu1_arm64.deb ... 357s Unpacking libapt-pkg7.0:arm64 (3.1.8ubuntu1) over (3.1.6ubuntu2) ... 357s Preparing to unpack .../3-apt_3.1.8ubuntu1_arm64.deb ... 357s Unpacking apt (3.1.8ubuntu1) over (3.1.6ubuntu2) ... 358s Preparing to unpack .../4-libgirepository-1.0-1_1.86.0-6_arm64.deb ... 358s Unpacking libgirepository-1.0-1:arm64 (1.86.0-6) over (1.84.0-1) ... 358s Preparing to unpack .../5-gir1.2-girepository-2.0_1.86.0-6_arm64.deb ... 358s Unpacking gir1.2-girepository-2.0:arm64 (1.86.0-6) over (1.84.0-1) ... 358s Preparing to unpack .../6-flash-kernel_3.109ubuntu7_arm64.deb ... 358s Unpacking flash-kernel (3.109ubuntu7) over (3.109ubuntu6) ... 358s Preparing to unpack .../7-lto-disabled-list_71_all.deb ... 358s Unpacking lto-disabled-list (71) over (69) ... 358s Setting up lto-disabled-list (71) ... 358s Setting up libgirepository-1.0-1:arm64 (1.86.0-6) ... 358s Setting up libapt-pkg7.0:arm64 (3.1.8ubuntu1) ... 358s Setting up libpython3-stdlib:arm64 (3.13.7-2) ... 358s Setting up apt (3.1.8ubuntu1) ... 359s Setting up python3 (3.13.7-2) ... 359s running python rtupdate hooks for python3.13... 359s running python post-rtupdate hooks for python3.13... 359s Setting up gir1.2-girepository-2.0:arm64 (1.86.0-6) ... 359s Setting up flash-kernel (3.109ubuntu7) ... 360s flash-kernel: deferring update (trigger activated) 360s Processing triggers for libc-bin (2.42-0ubuntu3) ... 360s Processing triggers for man-db (2.13.1-1) ... 362s Processing triggers for initramfs-tools (0.150ubuntu3) ... 362s update-initramfs: Generating /boot/initrd.img-6.17.0-5-generic 388s System running in EFI mode, skipping. 388s Processing triggers for flash-kernel (3.109ubuntu7) ... 389s System running in EFI mode, skipping. 389s autopkgtest [18:44:31]: upgrading testbed (apt dist-upgrade and autopurge) 390s Reading package lists... 390s Building dependency tree... 391s Reading state information... 391s Calculating upgrade... 392s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 392s Reading package lists... 392s Building dependency tree... 392s Reading state information... 392s Solving dependencies... 393s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 393s autopkgtest [18:44:35]: rebooting testbed after setup commands that affected boot 423s Reading package lists... 423s Building dependency tree... 423s Reading state information... 424s Solving dependencies... 424s The following NEW packages will be installed: 424s autoconf automake autotools-dev cpp-15 cpp-15-aarch64-linux-gnu 424s fontconfig-config fonts-dejavu-core fonts-dejavu-mono gcc-15 424s gcc-15-aarch64-linux-gnu gfortran-15 gfortran-15-aarch64-linux-gnu libaec0 424s libamd-comgr2 libamdhip64-5 libasan8 libblas3 libcairo2 libcc1-0 libdeflate0 424s libdouble-conversion3 libdrm-amdgpu1 libevent-2.1-7t64 424s libevent-core-2.1-7t64 libevent-dev libevent-extra-2.1-7t64 424s libevent-openssl-2.1-7t64 libevent-pthreads-2.1-7t64 libfabric1 424s libfftw3-double3 libfontconfig1 libgbm1 libgcc-15-dev libgfortran-15-dev 424s libgfortran5 libgl1 libgl1-mesa-dri libgl2ps1.4 libglew2.2 libglvnd0 424s libglx-mesa0 libglx0 libgomp1 libhdf5-310 libhdf5-hl-310 libhsa-runtime64-1 424s libhsakmt1 libhwasan0 libhwloc-dev libhwloc-plugins libhwloc15 libibmad5 424s libibumad3 libibverbs-dev libisl23 libitm1 libjbig0 libjpeg-turbo8 libjpeg8 424s libjs-jquery libjs-jquery-ui libjsoncpp26 libkim-api2 liblammps-dev 424s liblammps0t64 liblapack3 liblerc4 libllvm17t64 liblsan0 libltdl-dev libltdl7 424s libmpc3 libnetcdf22 libnl-3-dev libnl-route-3-dev libnuma-dev libogg0 424s libopengl0 libopenmpi-dev libopenmpi40 libpciaccess0 libpixman-1-0 424s libpnetcdf6 libproj25 librdmacm1t64 libsharpyuv0 libsz2 libtbb12 424s libtbbbind-2-5 libtbbmalloc2 libtcl8.6 libtheoradec1 libtheoraenc1 libtiff6 424s libtk8.6 libtsan2 libubsan1 libucx0 libvoro++1 libvtk9.3 libvulkan1 libwebp7 424s libx11-xcb1 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 424s libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxft2 libxnvctrl0 424s libxrender1 libxshmfence1 libxss1 libxxf86vm1 m4 mesa-libgallium 424s mpi-default-bin mpi-default-dev ocl-icd-libopencl1 openmpi-bin 424s openmpi-common proj-data python3-lammps x11-common zlib1g-dev 424s 0 upgraded, 128 newly installed, 0 to remove and 0 not upgraded. 424s Need to get 189 MB of archives. 424s After this operation, 768 MB of additional disk space will be used. 424s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 m4 arm64 1.4.19-8 [244 kB] 425s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 autoconf all 2.72-3.1ubuntu1 [384 kB] 425s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 autotools-dev all 20240727.1 [43.4 kB] 425s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 automake all 1:1.17-4ubuntu1 [572 kB] 425s Get:5 http://ftpmaster.internal/ubuntu resolute/main arm64 libisl23 arm64 0.27-1 [676 kB] 425s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 libmpc3 arm64 1.3.1-1build3 [58.9 kB] 425s Get:7 http://ftpmaster.internal/ubuntu resolute/main arm64 cpp-15-aarch64-linux-gnu arm64 15.2.0-5ubuntu1 [11.7 MB] 427s Get:8 http://ftpmaster.internal/ubuntu resolute/main arm64 cpp-15 arm64 15.2.0-5ubuntu1 [1028 B] 427s Get:9 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 427s Get:10 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 427s Get:11 http://ftpmaster.internal/ubuntu resolute/main arm64 fontconfig-config arm64 2.15.0-2.3ubuntu1 [38.1 kB] 427s Get:12 http://ftpmaster.internal/ubuntu resolute/main arm64 libcc1-0 arm64 15.2.0-5ubuntu1 [49.2 kB] 427s Get:13 http://ftpmaster.internal/ubuntu resolute/main arm64 libgomp1 arm64 15.2.0-5ubuntu1 [148 kB] 427s Get:14 http://ftpmaster.internal/ubuntu resolute/main arm64 libitm1 arm64 15.2.0-5ubuntu1 [28.1 kB] 427s Get:15 http://ftpmaster.internal/ubuntu resolute/main arm64 libasan8 arm64 15.2.0-5ubuntu1 [2922 kB] 427s Get:16 http://ftpmaster.internal/ubuntu resolute/main arm64 liblsan0 arm64 15.2.0-5ubuntu1 [1316 kB] 427s Get:17 http://ftpmaster.internal/ubuntu resolute/main arm64 libtsan2 arm64 15.2.0-5ubuntu1 [2689 kB] 428s Get:18 http://ftpmaster.internal/ubuntu resolute/main arm64 libubsan1 arm64 15.2.0-5ubuntu1 [1176 kB] 428s Get:19 http://ftpmaster.internal/ubuntu resolute/main arm64 libhwasan0 arm64 15.2.0-5ubuntu1 [1639 kB] 428s Get:20 http://ftpmaster.internal/ubuntu resolute/main arm64 libgcc-15-dev arm64 15.2.0-5ubuntu1 [2601 kB] 428s Get:21 http://ftpmaster.internal/ubuntu resolute/main arm64 gcc-15-aarch64-linux-gnu arm64 15.2.0-5ubuntu1 [23.1 MB] 429s Get:22 http://ftpmaster.internal/ubuntu resolute/main arm64 gcc-15 arm64 15.2.0-5ubuntu1 [512 kB] 429s Get:23 http://ftpmaster.internal/ubuntu resolute/main arm64 libgfortran5 arm64 15.2.0-5ubuntu1 [450 kB] 429s Get:24 http://ftpmaster.internal/ubuntu resolute/main arm64 libgfortran-15-dev arm64 15.2.0-5ubuntu1 [489 kB] 429s Get:25 http://ftpmaster.internal/ubuntu resolute/main arm64 gfortran-15-aarch64-linux-gnu arm64 15.2.0-5ubuntu1 [12.5 MB] 429s Get:26 http://ftpmaster.internal/ubuntu resolute/main arm64 gfortran-15 arm64 15.2.0-5ubuntu1 [17.7 kB] 429s Get:27 http://ftpmaster.internal/ubuntu resolute/universe arm64 libaec0 arm64 1.1.3-1 [22.0 kB] 429s Get:28 http://ftpmaster.internal/ubuntu resolute/universe arm64 libllvm17t64 arm64 1:17.0.6-22build1 [24.8 MB] 430s Get:29 http://ftpmaster.internal/ubuntu resolute/universe arm64 libamd-comgr2 arm64 6.0+git20231212.4510c28+dfsg-3build3 [14.0 MB] 430s Get:30 http://ftpmaster.internal/ubuntu resolute/main arm64 libdrm-amdgpu1 arm64 2.4.125-1 [21.6 kB] 430s Get:31 http://ftpmaster.internal/ubuntu resolute/universe arm64 libhsakmt1 arm64 6.2.4+ds-1 [64.7 kB] 430s Get:32 http://ftpmaster.internal/ubuntu resolute/universe arm64 libhsa-runtime64-1 arm64 6.1.2-3 [305 kB] 430s Get:33 http://ftpmaster.internal/ubuntu resolute/universe arm64 libamdhip64-5 arm64 5.7.1-6 [9707 kB] 430s Get:34 http://ftpmaster.internal/ubuntu resolute/main arm64 libblas3 arm64 3.12.1-6build1 [186 kB] 430s Get:35 http://ftpmaster.internal/ubuntu resolute/main arm64 libfontconfig1 arm64 2.15.0-2.3ubuntu1 [144 kB] 430s Get:36 http://ftpmaster.internal/ubuntu resolute/main arm64 libpixman-1-0 arm64 0.44.0-3 [197 kB] 430s Get:37 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-render0 arm64 1.17.0-2build1 [18.1 kB] 430s Get:38 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-shm0 arm64 1.17.0-2build1 [6234 B] 430s Get:39 http://ftpmaster.internal/ubuntu resolute/main arm64 libxrender1 arm64 1:0.9.12-1 [19.5 kB] 430s Get:40 http://ftpmaster.internal/ubuntu resolute/main arm64 libcairo2 arm64 1.18.4-1build1 [592 kB] 430s Get:41 http://ftpmaster.internal/ubuntu resolute/main arm64 libdeflate0 arm64 1.23-2 [46.4 kB] 430s Get:42 http://ftpmaster.internal/ubuntu resolute/universe arm64 libdouble-conversion3 arm64 3.3.1-1build1 [40.6 kB] 430s Get:43 http://ftpmaster.internal/ubuntu resolute/main arm64 libevent-2.1-7t64 arm64 2.1.12-stable-10build1 [152 kB] 430s Get:44 http://ftpmaster.internal/ubuntu resolute/main arm64 libevent-core-2.1-7t64 arm64 2.1.12-stable-10build1 [97.5 kB] 430s Get:45 http://ftpmaster.internal/ubuntu resolute/main arm64 libevent-extra-2.1-7t64 arm64 2.1.12-stable-10build1 [67.1 kB] 430s Get:46 http://ftpmaster.internal/ubuntu resolute/main arm64 libevent-pthreads-2.1-7t64 arm64 2.1.12-stable-10build1 [8272 B] 430s Get:47 http://ftpmaster.internal/ubuntu resolute/main arm64 libevent-openssl-2.1-7t64 arm64 2.1.12-stable-10build1 [15.9 kB] 430s Get:48 http://ftpmaster.internal/ubuntu resolute/main arm64 libevent-dev arm64 2.1.12-stable-10build1 [295 kB] 430s Get:49 http://ftpmaster.internal/ubuntu resolute/main arm64 librdmacm1t64 arm64 56.1-1ubuntu1 [71.4 kB] 430s Get:50 http://ftpmaster.internal/ubuntu resolute/universe arm64 libfabric1 arm64 2.1.0-1.1 [622 kB] 430s Get:51 http://ftpmaster.internal/ubuntu resolute/main arm64 libfftw3-double3 arm64 3.3.10-2fakesync1build2 [399 kB] 430s Get:52 http://ftpmaster.internal/ubuntu resolute/main arm64 libx11-xcb1 arm64 2:1.8.12-1build1 [8216 B] 430s Get:53 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-dri3-0 arm64 1.17.0-2build1 [8120 B] 430s Get:54 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-present0 arm64 1.17.0-2build1 [6560 B] 430s Get:55 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-randr0 arm64 1.17.0-2build1 [20.2 kB] 430s Get:56 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-sync1 arm64 1.17.0-2build1 [10.4 kB] 430s Get:57 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-xfixes0 arm64 1.17.0-2build1 [11.4 kB] 430s Get:58 http://ftpmaster.internal/ubuntu resolute/main arm64 libxshmfence1 arm64 1.3.3-1 [5378 B] 430s Get:59 http://ftpmaster.internal/ubuntu resolute/main arm64 mesa-libgallium arm64 25.2.3-1ubuntu1 [12.1 MB] 431s Get:60 http://ftpmaster.internal/ubuntu resolute/main arm64 libgbm1 arm64 25.2.3-1ubuntu1 [34.4 kB] 431s Get:61 http://ftpmaster.internal/ubuntu resolute/main arm64 libvulkan1 arm64 1.4.321.0-1 [169 kB] 431s Get:62 http://ftpmaster.internal/ubuntu resolute/main arm64 libgl1-mesa-dri arm64 25.2.3-1ubuntu1 [34.9 kB] 431s Get:63 http://ftpmaster.internal/ubuntu resolute/main arm64 libglvnd0 arm64 1.7.0-1build2 [59.2 kB] 431s Get:64 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-glx0 arm64 1.17.0-2build1 [27.8 kB] 431s Get:65 http://ftpmaster.internal/ubuntu resolute/main arm64 libxxf86vm1 arm64 1:1.1.4-1build4 [9130 B] 431s Get:66 http://ftpmaster.internal/ubuntu resolute/main arm64 libglx-mesa0 arm64 25.2.3-1ubuntu1 [110 kB] 431s Get:67 http://ftpmaster.internal/ubuntu resolute/main arm64 libglx0 arm64 1.7.0-1build2 [34.5 kB] 431s Get:68 http://ftpmaster.internal/ubuntu resolute/main arm64 libgl1 arm64 1.7.0-1build2 [104 kB] 431s Get:69 http://ftpmaster.internal/ubuntu resolute/universe arm64 libgl2ps1.4 arm64 1.4.2+dfsg1-2build1 [40.6 kB] 431s Get:70 http://ftpmaster.internal/ubuntu resolute/universe arm64 libglew2.2 arm64 2.2.0-4build1 [191 kB] 431s Get:71 http://ftpmaster.internal/ubuntu resolute/universe arm64 libsz2 arm64 1.1.3-1 [5254 B] 431s Get:72 http://ftpmaster.internal/ubuntu resolute/universe arm64 libhdf5-310 arm64 1.14.5+repack-3build1 [1331 kB] 431s Get:73 http://ftpmaster.internal/ubuntu resolute/universe arm64 libhdf5-hl-310 arm64 1.14.5+repack-3build1 [59.8 kB] 431s Get:74 http://ftpmaster.internal/ubuntu resolute/universe arm64 libhwloc15 arm64 2.12.2-1 [169 kB] 431s Get:75 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg-turbo8 arm64 2.1.5-4ubuntu2 [165 kB] 431s Get:76 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 431s Get:77 http://ftpmaster.internal/ubuntu resolute/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 431s Get:78 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 431s Get:79 http://ftpmaster.internal/ubuntu resolute/main arm64 libjsoncpp26 arm64 1.9.6-3 [78.7 kB] 431s Get:80 http://ftpmaster.internal/ubuntu resolute/universe arm64 libkim-api2 arm64 2.3.0-1ubuntu1 [565 kB] 431s Get:81 http://ftpmaster.internal/ubuntu resolute/main arm64 liblapack3 arm64 3.12.1-6build1 [2340 kB] 431s Get:82 http://ftpmaster.internal/ubuntu resolute/universe arm64 libnetcdf22 arm64 1:4.9.3-1build1 [555 kB] 431s Get:83 http://ftpmaster.internal/ubuntu resolute/main arm64 libibumad3 arm64 56.1-1ubuntu1 [31.3 kB] 431s Get:84 http://ftpmaster.internal/ubuntu resolute/main arm64 libibmad5 arm64 56.1-1ubuntu1 [44.1 kB] 431s Get:85 http://ftpmaster.internal/ubuntu resolute/universe arm64 libucx0 arm64 1.19.0+ds-1 [1242 kB] 431s Get:86 http://ftpmaster.internal/ubuntu resolute/main arm64 libpciaccess0 arm64 0.18.1-1ubuntu2 [19.4 kB] 431s Get:87 http://ftpmaster.internal/ubuntu resolute/main arm64 libxnvctrl0 arm64 510.47.03-0ubuntu4 [12.4 kB] 431s Get:88 http://ftpmaster.internal/ubuntu resolute/main arm64 ocl-icd-libopencl1 arm64 2.3.3-1 [42.2 kB] 431s Get:89 http://ftpmaster.internal/ubuntu resolute/universe arm64 libhwloc-plugins arm64 2.12.2-1 [16.6 kB] 431s Get:90 http://ftpmaster.internal/ubuntu resolute/universe arm64 libopenmpi40 arm64 5.0.8-8ubuntu1 [3274 kB] 431s Get:91 http://ftpmaster.internal/ubuntu resolute/universe arm64 libpnetcdf6 arm64 1.14.0-2 [971 kB] 431s Get:92 http://ftpmaster.internal/ubuntu resolute/universe arm64 libvoro++1 arm64 0.5+revert-to-0.4.6+dfsg1-1 [101 kB] 431s Get:93 http://ftpmaster.internal/ubuntu resolute/main arm64 libogg0 arm64 1.3.5-3build1 [22.6 kB] 431s Get:94 http://ftpmaster.internal/ubuntu resolute/main arm64 libopengl0 arm64 1.7.0-1build2 [34.7 kB] 431s Get:95 http://ftpmaster.internal/ubuntu resolute/universe arm64 proj-data all 9.6.0-1 [7955 kB] 432s Get:96 http://ftpmaster.internal/ubuntu resolute/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB] 432s Get:97 http://ftpmaster.internal/ubuntu resolute/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB] 432s Get:98 http://ftpmaster.internal/ubuntu resolute/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB] 432s Get:99 http://ftpmaster.internal/ubuntu resolute/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB] 432s Get:100 http://ftpmaster.internal/ubuntu resolute/main arm64 libtiff6 arm64 4.7.0-3ubuntu3 [196 kB] 432s Get:101 http://ftpmaster.internal/ubuntu resolute/universe arm64 libproj25 arm64 9.6.0-1 [1358 kB] 432s Get:102 http://ftpmaster.internal/ubuntu resolute/universe arm64 libtbbbind-2-5 arm64 2022.1.0-1 [14.3 kB] 432s Get:103 http://ftpmaster.internal/ubuntu resolute/universe arm64 libtbbmalloc2 arm64 2022.1.0-1 [39.0 kB] 432s Get:104 http://ftpmaster.internal/ubuntu resolute/universe arm64 libtbb12 arm64 2022.1.0-1 [72.1 kB] 432s Get:105 http://ftpmaster.internal/ubuntu resolute/main arm64 libtcl8.6 arm64 8.6.17+dfsg-1 [1024 kB] 432s Get:106 http://ftpmaster.internal/ubuntu resolute/main arm64 libtheoradec1 arm64 1.2.0~alpha1+dfsg-6 [57.1 kB] 432s Get:107 http://ftpmaster.internal/ubuntu resolute/main arm64 libtheoraenc1 arm64 1.2.0~alpha1+dfsg-6 [107 kB] 432s Get:108 http://ftpmaster.internal/ubuntu resolute/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB] 432s Get:109 http://ftpmaster.internal/ubuntu resolute/main arm64 x11-common all 1:7.7+24ubuntu1 [22.4 kB] 432s Get:110 http://ftpmaster.internal/ubuntu resolute/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B] 432s Get:111 http://ftpmaster.internal/ubuntu resolute/main arm64 libtk8.6 arm64 8.6.17-1 [811 kB] 432s Get:112 http://ftpmaster.internal/ubuntu resolute/universe arm64 libvtk9.3 arm64 9.3.0+dfsg1-4ubuntu2 [24.0 MB] 433s Get:113 http://ftpmaster.internal/ubuntu resolute/universe arm64 liblammps0t64 arm64 20250204+dfsg.1-2 [7457 kB] 433s Get:114 http://ftpmaster.internal/ubuntu resolute/universe arm64 openmpi-common all 5.0.8-8ubuntu1 [108 kB] 433s Get:115 http://ftpmaster.internal/ubuntu resolute/main arm64 libnl-3-dev arm64 3.7.0-2build1 [111 kB] 433s Get:116 http://ftpmaster.internal/ubuntu resolute/main arm64 libnl-route-3-dev arm64 3.7.0-2build1 [245 kB] 433s Get:117 http://ftpmaster.internal/ubuntu resolute/main arm64 libibverbs-dev arm64 56.1-1ubuntu1 [703 kB] 433s Get:118 http://ftpmaster.internal/ubuntu resolute/main arm64 libnuma-dev arm64 2.0.19-1 [39.7 kB] 433s Get:119 http://ftpmaster.internal/ubuntu resolute/main arm64 libltdl7 arm64 2.5.4-4build1 [44.3 kB] 433s Get:120 http://ftpmaster.internal/ubuntu resolute/main arm64 libltdl-dev arm64 2.5.4-4build1 [174 kB] 433s Get:121 http://ftpmaster.internal/ubuntu resolute/universe arm64 libhwloc-dev arm64 2.12.2-1 [274 kB] 433s Get:122 http://ftpmaster.internal/ubuntu resolute/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu2 [899 kB] 433s Get:123 http://ftpmaster.internal/ubuntu resolute/universe arm64 openmpi-bin arm64 5.0.8-8ubuntu1 [209 kB] 434s Get:124 http://ftpmaster.internal/ubuntu resolute/universe arm64 libopenmpi-dev arm64 5.0.8-8ubuntu1 [1225 kB] 434s Get:125 http://ftpmaster.internal/ubuntu resolute/universe arm64 mpi-default-dev arm64 1.18 [3324 B] 434s Get:126 http://ftpmaster.internal/ubuntu resolute/universe arm64 liblammps-dev arm64 20250204+dfsg.1-2 [114 kB] 434s Get:127 http://ftpmaster.internal/ubuntu resolute/universe arm64 mpi-default-bin arm64 1.18 [2510 B] 434s Get:128 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-lammps arm64 20250204+dfsg.1-2 [75.4 kB] 434s Fetched 189 MB in 9s (20.4 MB/s) 434s Selecting previously unselected package m4. 435s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83359 files and directories currently installed.) 435s Preparing to unpack .../000-m4_1.4.19-8_arm64.deb ... 435s Unpacking m4 (1.4.19-8) ... 435s Selecting previously unselected package autoconf. 435s Preparing to unpack .../001-autoconf_2.72-3.1ubuntu1_all.deb ... 435s Unpacking autoconf (2.72-3.1ubuntu1) ... 435s Selecting previously unselected package autotools-dev. 435s Preparing to unpack .../002-autotools-dev_20240727.1_all.deb ... 435s Unpacking autotools-dev (20240727.1) ... 435s Selecting previously unselected package automake. 435s Preparing to unpack .../003-automake_1%3a1.17-4ubuntu1_all.deb ... 435s Unpacking automake (1:1.17-4ubuntu1) ... 435s Selecting previously unselected package libisl23:arm64. 435s Preparing to unpack .../004-libisl23_0.27-1_arm64.deb ... 435s Unpacking libisl23:arm64 (0.27-1) ... 435s Selecting previously unselected package libmpc3:arm64. 435s Preparing to unpack .../005-libmpc3_1.3.1-1build3_arm64.deb ... 435s Unpacking libmpc3:arm64 (1.3.1-1build3) ... 435s Selecting previously unselected package cpp-15-aarch64-linux-gnu. 435s Preparing to unpack .../006-cpp-15-aarch64-linux-gnu_15.2.0-5ubuntu1_arm64.deb ... 435s Unpacking cpp-15-aarch64-linux-gnu (15.2.0-5ubuntu1) ... 435s Selecting previously unselected package cpp-15. 435s Preparing to unpack .../007-cpp-15_15.2.0-5ubuntu1_arm64.deb ... 435s Unpacking cpp-15 (15.2.0-5ubuntu1) ... 435s Selecting previously unselected package fonts-dejavu-mono. 435s Preparing to unpack .../008-fonts-dejavu-mono_2.37-8_all.deb ... 435s Unpacking fonts-dejavu-mono (2.37-8) ... 435s Selecting previously unselected package fonts-dejavu-core. 435s Preparing to unpack .../009-fonts-dejavu-core_2.37-8_all.deb ... 435s Unpacking fonts-dejavu-core (2.37-8) ... 435s Selecting previously unselected package fontconfig-config. 435s Preparing to unpack .../010-fontconfig-config_2.15.0-2.3ubuntu1_arm64.deb ... 436s Unpacking fontconfig-config (2.15.0-2.3ubuntu1) ... 436s Selecting previously unselected package libcc1-0:arm64. 436s Preparing to unpack .../011-libcc1-0_15.2.0-5ubuntu1_arm64.deb ... 436s Unpacking libcc1-0:arm64 (15.2.0-5ubuntu1) ... 436s Selecting previously unselected package libgomp1:arm64. 436s Preparing to unpack .../012-libgomp1_15.2.0-5ubuntu1_arm64.deb ... 436s Unpacking libgomp1:arm64 (15.2.0-5ubuntu1) ... 436s Selecting previously unselected package libitm1:arm64. 436s Preparing to unpack .../013-libitm1_15.2.0-5ubuntu1_arm64.deb ... 436s Unpacking libitm1:arm64 (15.2.0-5ubuntu1) ... 436s Selecting previously unselected package libasan8:arm64. 436s Preparing to unpack .../014-libasan8_15.2.0-5ubuntu1_arm64.deb ... 436s Unpacking libasan8:arm64 (15.2.0-5ubuntu1) ... 436s Selecting previously unselected package liblsan0:arm64. 436s Preparing to unpack .../015-liblsan0_15.2.0-5ubuntu1_arm64.deb ... 436s Unpacking liblsan0:arm64 (15.2.0-5ubuntu1) ... 436s Selecting previously unselected package libtsan2:arm64. 436s Preparing to unpack .../016-libtsan2_15.2.0-5ubuntu1_arm64.deb ... 436s Unpacking libtsan2:arm64 (15.2.0-5ubuntu1) ... 436s Selecting previously unselected package libubsan1:arm64. 436s Preparing to unpack .../017-libubsan1_15.2.0-5ubuntu1_arm64.deb ... 436s Unpacking libubsan1:arm64 (15.2.0-5ubuntu1) ... 436s Selecting previously unselected package libhwasan0:arm64. 436s Preparing to unpack .../018-libhwasan0_15.2.0-5ubuntu1_arm64.deb ... 436s Unpacking libhwasan0:arm64 (15.2.0-5ubuntu1) ... 436s Selecting previously unselected package libgcc-15-dev:arm64. 436s Preparing to unpack .../019-libgcc-15-dev_15.2.0-5ubuntu1_arm64.deb ... 436s Unpacking libgcc-15-dev:arm64 (15.2.0-5ubuntu1) ... 436s Selecting previously unselected package gcc-15-aarch64-linux-gnu. 436s Preparing to unpack .../020-gcc-15-aarch64-linux-gnu_15.2.0-5ubuntu1_arm64.deb ... 436s Unpacking gcc-15-aarch64-linux-gnu (15.2.0-5ubuntu1) ... 437s Selecting previously unselected package gcc-15. 437s Preparing to unpack .../021-gcc-15_15.2.0-5ubuntu1_arm64.deb ... 437s Unpacking gcc-15 (15.2.0-5ubuntu1) ... 437s Selecting previously unselected package libgfortran5:arm64. 437s Preparing to unpack .../022-libgfortran5_15.2.0-5ubuntu1_arm64.deb ... 437s Unpacking libgfortran5:arm64 (15.2.0-5ubuntu1) ... 437s Selecting previously unselected package libgfortran-15-dev:arm64. 437s Preparing to unpack .../023-libgfortran-15-dev_15.2.0-5ubuntu1_arm64.deb ... 437s Unpacking libgfortran-15-dev:arm64 (15.2.0-5ubuntu1) ... 437s Selecting previously unselected package gfortran-15-aarch64-linux-gnu. 437s Preparing to unpack .../024-gfortran-15-aarch64-linux-gnu_15.2.0-5ubuntu1_arm64.deb ... 437s Unpacking gfortran-15-aarch64-linux-gnu (15.2.0-5ubuntu1) ... 437s Selecting previously unselected package gfortran-15. 437s Preparing to unpack .../025-gfortran-15_15.2.0-5ubuntu1_arm64.deb ... 437s Unpacking gfortran-15 (15.2.0-5ubuntu1) ... 437s Selecting previously unselected package libaec0:arm64. 437s Preparing to unpack .../026-libaec0_1.1.3-1_arm64.deb ... 437s Unpacking libaec0:arm64 (1.1.3-1) ... 437s Selecting previously unselected package libllvm17t64:arm64. 437s Preparing to unpack .../027-libllvm17t64_1%3a17.0.6-22build1_arm64.deb ... 437s Unpacking libllvm17t64:arm64 (1:17.0.6-22build1) ... 438s Selecting previously unselected package libamd-comgr2:arm64. 438s Preparing to unpack .../028-libamd-comgr2_6.0+git20231212.4510c28+dfsg-3build3_arm64.deb ... 438s Unpacking libamd-comgr2:arm64 (6.0+git20231212.4510c28+dfsg-3build3) ... 438s Selecting previously unselected package libdrm-amdgpu1:arm64. 438s Preparing to unpack .../029-libdrm-amdgpu1_2.4.125-1_arm64.deb ... 438s Unpacking libdrm-amdgpu1:arm64 (2.4.125-1) ... 438s Selecting previously unselected package libhsakmt1:arm64. 438s Preparing to unpack .../030-libhsakmt1_6.2.4+ds-1_arm64.deb ... 438s Unpacking libhsakmt1:arm64 (6.2.4+ds-1) ... 438s Selecting previously unselected package libhsa-runtime64-1:arm64. 438s Preparing to unpack .../031-libhsa-runtime64-1_6.1.2-3_arm64.deb ... 438s Unpacking libhsa-runtime64-1:arm64 (6.1.2-3) ... 438s Selecting previously unselected package libamdhip64-5:arm64. 438s Preparing to unpack .../032-libamdhip64-5_5.7.1-6_arm64.deb ... 438s Unpacking libamdhip64-5:arm64 (5.7.1-6) ... 438s Selecting previously unselected package libblas3:arm64. 438s Preparing to unpack .../033-libblas3_3.12.1-6build1_arm64.deb ... 438s Unpacking libblas3:arm64 (3.12.1-6build1) ... 438s Selecting previously unselected package libfontconfig1:arm64. 438s Preparing to unpack .../034-libfontconfig1_2.15.0-2.3ubuntu1_arm64.deb ... 438s Unpacking libfontconfig1:arm64 (2.15.0-2.3ubuntu1) ... 438s Selecting previously unselected package libpixman-1-0:arm64. 438s Preparing to unpack .../035-libpixman-1-0_0.44.0-3_arm64.deb ... 438s Unpacking libpixman-1-0:arm64 (0.44.0-3) ... 438s Selecting previously unselected package libxcb-render0:arm64. 438s Preparing to unpack .../036-libxcb-render0_1.17.0-2build1_arm64.deb ... 438s Unpacking libxcb-render0:arm64 (1.17.0-2build1) ... 438s Selecting previously unselected package libxcb-shm0:arm64. 438s Preparing to unpack .../037-libxcb-shm0_1.17.0-2build1_arm64.deb ... 438s Unpacking libxcb-shm0:arm64 (1.17.0-2build1) ... 438s Selecting previously unselected package libxrender1:arm64. 438s Preparing to unpack .../038-libxrender1_1%3a0.9.12-1_arm64.deb ... 438s Unpacking libxrender1:arm64 (1:0.9.12-1) ... 438s Selecting previously unselected package libcairo2:arm64. 438s Preparing to unpack .../039-libcairo2_1.18.4-1build1_arm64.deb ... 438s Unpacking libcairo2:arm64 (1.18.4-1build1) ... 439s Selecting previously unselected package libdeflate0:arm64. 439s Preparing to unpack .../040-libdeflate0_1.23-2_arm64.deb ... 439s Unpacking libdeflate0:arm64 (1.23-2) ... 439s Selecting previously unselected package libdouble-conversion3:arm64. 439s Preparing to unpack .../041-libdouble-conversion3_3.3.1-1build1_arm64.deb ... 439s Unpacking libdouble-conversion3:arm64 (3.3.1-1build1) ... 439s Selecting previously unselected package libevent-2.1-7t64:arm64. 439s Preparing to unpack .../042-libevent-2.1-7t64_2.1.12-stable-10build1_arm64.deb ... 439s Unpacking libevent-2.1-7t64:arm64 (2.1.12-stable-10build1) ... 439s Selecting previously unselected package libevent-core-2.1-7t64:arm64. 439s Preparing to unpack .../043-libevent-core-2.1-7t64_2.1.12-stable-10build1_arm64.deb ... 439s Unpacking libevent-core-2.1-7t64:arm64 (2.1.12-stable-10build1) ... 439s Selecting previously unselected package libevent-extra-2.1-7t64:arm64. 439s Preparing to unpack .../044-libevent-extra-2.1-7t64_2.1.12-stable-10build1_arm64.deb ... 439s Unpacking libevent-extra-2.1-7t64:arm64 (2.1.12-stable-10build1) ... 439s Selecting previously unselected package libevent-pthreads-2.1-7t64:arm64. 439s Preparing to unpack .../045-libevent-pthreads-2.1-7t64_2.1.12-stable-10build1_arm64.deb ... 439s Unpacking libevent-pthreads-2.1-7t64:arm64 (2.1.12-stable-10build1) ... 439s Selecting previously unselected package libevent-openssl-2.1-7t64:arm64. 439s Preparing to unpack .../046-libevent-openssl-2.1-7t64_2.1.12-stable-10build1_arm64.deb ... 439s Unpacking libevent-openssl-2.1-7t64:arm64 (2.1.12-stable-10build1) ... 439s Selecting previously unselected package libevent-dev. 439s Preparing to unpack .../047-libevent-dev_2.1.12-stable-10build1_arm64.deb ... 439s Unpacking libevent-dev (2.1.12-stable-10build1) ... 439s Selecting previously unselected package librdmacm1t64:arm64. 439s Preparing to unpack .../048-librdmacm1t64_56.1-1ubuntu1_arm64.deb ... 439s Unpacking librdmacm1t64:arm64 (56.1-1ubuntu1) ... 439s Selecting previously unselected package libfabric1:arm64. 439s Preparing to unpack .../049-libfabric1_2.1.0-1.1_arm64.deb ... 439s Unpacking libfabric1:arm64 (2.1.0-1.1) ... 439s Selecting previously unselected package libfftw3-double3:arm64. 439s Preparing to unpack .../050-libfftw3-double3_3.3.10-2fakesync1build2_arm64.deb ... 439s Unpacking libfftw3-double3:arm64 (3.3.10-2fakesync1build2) ... 439s Selecting previously unselected package libx11-xcb1:arm64. 439s Preparing to unpack .../051-libx11-xcb1_2%3a1.8.12-1build1_arm64.deb ... 439s Unpacking libx11-xcb1:arm64 (2:1.8.12-1build1) ... 439s Selecting previously unselected package libxcb-dri3-0:arm64. 439s Preparing to unpack .../052-libxcb-dri3-0_1.17.0-2build1_arm64.deb ... 439s Unpacking libxcb-dri3-0:arm64 (1.17.0-2build1) ... 439s Selecting previously unselected package libxcb-present0:arm64. 439s Preparing to unpack .../053-libxcb-present0_1.17.0-2build1_arm64.deb ... 439s Unpacking libxcb-present0:arm64 (1.17.0-2build1) ... 439s Selecting previously unselected package libxcb-randr0:arm64. 439s Preparing to unpack .../054-libxcb-randr0_1.17.0-2build1_arm64.deb ... 439s Unpacking libxcb-randr0:arm64 (1.17.0-2build1) ... 439s Selecting previously unselected package libxcb-sync1:arm64. 439s Preparing to unpack .../055-libxcb-sync1_1.17.0-2build1_arm64.deb ... 439s Unpacking libxcb-sync1:arm64 (1.17.0-2build1) ... 439s Selecting previously unselected package libxcb-xfixes0:arm64. 439s Preparing to unpack .../056-libxcb-xfixes0_1.17.0-2build1_arm64.deb ... 439s Unpacking libxcb-xfixes0:arm64 (1.17.0-2build1) ... 439s Selecting previously unselected package libxshmfence1:arm64. 439s Preparing to unpack .../057-libxshmfence1_1.3.3-1_arm64.deb ... 439s Unpacking libxshmfence1:arm64 (1.3.3-1) ... 439s Selecting previously unselected package mesa-libgallium:arm64. 439s Preparing to unpack .../058-mesa-libgallium_25.2.3-1ubuntu1_arm64.deb ... 439s Unpacking mesa-libgallium:arm64 (25.2.3-1ubuntu1) ... 439s Selecting previously unselected package libgbm1:arm64. 439s Preparing to unpack .../059-libgbm1_25.2.3-1ubuntu1_arm64.deb ... 439s Unpacking libgbm1:arm64 (25.2.3-1ubuntu1) ... 439s Selecting previously unselected package libvulkan1:arm64. 439s Preparing to unpack .../060-libvulkan1_1.4.321.0-1_arm64.deb ... 439s Unpacking libvulkan1:arm64 (1.4.321.0-1) ... 440s Selecting previously unselected package libgl1-mesa-dri:arm64. 440s Preparing to unpack .../061-libgl1-mesa-dri_25.2.3-1ubuntu1_arm64.deb ... 440s Unpacking libgl1-mesa-dri:arm64 (25.2.3-1ubuntu1) ... 440s Selecting previously unselected package libglvnd0:arm64. 440s Preparing to unpack .../062-libglvnd0_1.7.0-1build2_arm64.deb ... 440s Unpacking libglvnd0:arm64 (1.7.0-1build2) ... 440s Selecting previously unselected package libxcb-glx0:arm64. 440s Preparing to unpack .../063-libxcb-glx0_1.17.0-2build1_arm64.deb ... 440s Unpacking libxcb-glx0:arm64 (1.17.0-2build1) ... 440s Selecting previously unselected package libxxf86vm1:arm64. 440s Preparing to unpack .../064-libxxf86vm1_1%3a1.1.4-1build4_arm64.deb ... 440s Unpacking libxxf86vm1:arm64 (1:1.1.4-1build4) ... 440s Selecting previously unselected package libglx-mesa0:arm64. 440s Preparing to unpack .../065-libglx-mesa0_25.2.3-1ubuntu1_arm64.deb ... 440s Unpacking libglx-mesa0:arm64 (25.2.3-1ubuntu1) ... 440s Selecting previously unselected package libglx0:arm64. 440s Preparing to unpack .../066-libglx0_1.7.0-1build2_arm64.deb ... 440s Unpacking libglx0:arm64 (1.7.0-1build2) ... 440s Selecting previously unselected package libgl1:arm64. 440s Preparing to unpack .../067-libgl1_1.7.0-1build2_arm64.deb ... 440s Unpacking libgl1:arm64 (1.7.0-1build2) ... 440s Selecting previously unselected package libgl2ps1.4. 440s Preparing to unpack .../068-libgl2ps1.4_1.4.2+dfsg1-2build1_arm64.deb ... 440s Unpacking libgl2ps1.4 (1.4.2+dfsg1-2build1) ... 440s Selecting previously unselected package libglew2.2:arm64. 440s Preparing to unpack .../069-libglew2.2_2.2.0-4build1_arm64.deb ... 440s Unpacking libglew2.2:arm64 (2.2.0-4build1) ... 440s Selecting previously unselected package libsz2:arm64. 440s Preparing to unpack .../070-libsz2_1.1.3-1_arm64.deb ... 440s Unpacking libsz2:arm64 (1.1.3-1) ... 440s Selecting previously unselected package libhdf5-310:arm64. 440s Preparing to unpack .../071-libhdf5-310_1.14.5+repack-3build1_arm64.deb ... 440s Unpacking libhdf5-310:arm64 (1.14.5+repack-3build1) ... 440s Selecting previously unselected package libhdf5-hl-310:arm64. 440s Preparing to unpack .../072-libhdf5-hl-310_1.14.5+repack-3build1_arm64.deb ... 440s Unpacking libhdf5-hl-310:arm64 (1.14.5+repack-3build1) ... 440s Selecting previously unselected package libhwloc15:arm64. 440s Preparing to unpack .../073-libhwloc15_2.12.2-1_arm64.deb ... 440s Unpacking libhwloc15:arm64 (2.12.2-1) ... 440s Selecting previously unselected package libjpeg-turbo8:arm64. 440s Preparing to unpack .../074-libjpeg-turbo8_2.1.5-4ubuntu2_arm64.deb ... 440s Unpacking libjpeg-turbo8:arm64 (2.1.5-4ubuntu2) ... 440s Selecting previously unselected package libjpeg8:arm64. 440s Preparing to unpack .../075-libjpeg8_8c-2ubuntu11_arm64.deb ... 440s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 440s Selecting previously unselected package libjs-jquery. 440s Preparing to unpack .../076-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 440s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 440s Selecting previously unselected package libjs-jquery-ui. 440s Preparing to unpack .../077-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 440s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 440s Selecting previously unselected package libjsoncpp26:arm64. 440s Preparing to unpack .../078-libjsoncpp26_1.9.6-3_arm64.deb ... 440s Unpacking libjsoncpp26:arm64 (1.9.6-3) ... 440s Selecting previously unselected package libkim-api2:arm64. 440s Preparing to unpack .../079-libkim-api2_2.3.0-1ubuntu1_arm64.deb ... 440s Unpacking libkim-api2:arm64 (2.3.0-1ubuntu1) ... 440s Selecting previously unselected package liblapack3:arm64. 440s Preparing to unpack .../080-liblapack3_3.12.1-6build1_arm64.deb ... 440s Unpacking liblapack3:arm64 (3.12.1-6build1) ... 440s Selecting previously unselected package libnetcdf22:arm64. 440s Preparing to unpack .../081-libnetcdf22_1%3a4.9.3-1build1_arm64.deb ... 440s Unpacking libnetcdf22:arm64 (1:4.9.3-1build1) ... 440s Selecting previously unselected package libibumad3:arm64. 440s Preparing to unpack .../082-libibumad3_56.1-1ubuntu1_arm64.deb ... 440s Unpacking libibumad3:arm64 (56.1-1ubuntu1) ... 440s Selecting previously unselected package libibmad5:arm64. 441s Preparing to unpack .../083-libibmad5_56.1-1ubuntu1_arm64.deb ... 441s Unpacking libibmad5:arm64 (56.1-1ubuntu1) ... 441s Selecting previously unselected package libucx0:arm64. 441s Preparing to unpack .../084-libucx0_1.19.0+ds-1_arm64.deb ... 441s Unpacking libucx0:arm64 (1.19.0+ds-1) ... 441s Selecting previously unselected package libpciaccess0:arm64. 441s Preparing to unpack .../085-libpciaccess0_0.18.1-1ubuntu2_arm64.deb ... 441s Unpacking libpciaccess0:arm64 (0.18.1-1ubuntu2) ... 441s Selecting previously unselected package libxnvctrl0:arm64. 441s Preparing to unpack .../086-libxnvctrl0_510.47.03-0ubuntu4_arm64.deb ... 441s Unpacking libxnvctrl0:arm64 (510.47.03-0ubuntu4) ... 441s Selecting previously unselected package ocl-icd-libopencl1:arm64. 441s Preparing to unpack .../087-ocl-icd-libopencl1_2.3.3-1_arm64.deb ... 441s Unpacking ocl-icd-libopencl1:arm64 (2.3.3-1) ... 441s Selecting previously unselected package libhwloc-plugins:arm64. 441s Preparing to unpack .../088-libhwloc-plugins_2.12.2-1_arm64.deb ... 441s Unpacking libhwloc-plugins:arm64 (2.12.2-1) ... 441s Selecting previously unselected package libopenmpi40:arm64. 441s Preparing to unpack .../089-libopenmpi40_5.0.8-8ubuntu1_arm64.deb ... 441s Unpacking libopenmpi40:arm64 (5.0.8-8ubuntu1) ... 441s Selecting previously unselected package libpnetcdf6:arm64. 441s Preparing to unpack .../090-libpnetcdf6_1.14.0-2_arm64.deb ... 441s Unpacking libpnetcdf6:arm64 (1.14.0-2) ... 441s Selecting previously unselected package libvoro++1. 441s Preparing to unpack .../091-libvoro++1_0.5+revert-to-0.4.6+dfsg1-1_arm64.deb ... 441s Unpacking libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ... 441s Selecting previously unselected package libogg0:arm64. 441s Preparing to unpack .../092-libogg0_1.3.5-3build1_arm64.deb ... 441s Unpacking libogg0:arm64 (1.3.5-3build1) ... 441s Selecting previously unselected package libopengl0:arm64. 441s Preparing to unpack .../093-libopengl0_1.7.0-1build2_arm64.deb ... 441s Unpacking libopengl0:arm64 (1.7.0-1build2) ... 441s Selecting previously unselected package proj-data. 441s Preparing to unpack .../094-proj-data_9.6.0-1_all.deb ... 441s Unpacking proj-data (9.6.0-1) ... 441s Selecting previously unselected package libjbig0:arm64. 441s Preparing to unpack .../095-libjbig0_2.1-6.1ubuntu2_arm64.deb ... 441s Unpacking libjbig0:arm64 (2.1-6.1ubuntu2) ... 441s Selecting previously unselected package liblerc4:arm64. 441s Preparing to unpack .../096-liblerc4_4.0.0+ds-5ubuntu1_arm64.deb ... 441s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 441s Selecting previously unselected package libsharpyuv0:arm64. 441s Preparing to unpack .../097-libsharpyuv0_1.5.0-0.1_arm64.deb ... 441s Unpacking libsharpyuv0:arm64 (1.5.0-0.1) ... 441s Selecting previously unselected package libwebp7:arm64. 441s Preparing to unpack .../098-libwebp7_1.5.0-0.1_arm64.deb ... 441s Unpacking libwebp7:arm64 (1.5.0-0.1) ... 441s Selecting previously unselected package libtiff6:arm64. 441s Preparing to unpack .../099-libtiff6_4.7.0-3ubuntu3_arm64.deb ... 441s Unpacking libtiff6:arm64 (4.7.0-3ubuntu3) ... 441s Selecting previously unselected package libproj25:arm64. 441s Preparing to unpack .../100-libproj25_9.6.0-1_arm64.deb ... 441s Unpacking libproj25:arm64 (9.6.0-1) ... 441s Selecting previously unselected package libtbbbind-2-5:arm64. 441s Preparing to unpack .../101-libtbbbind-2-5_2022.1.0-1_arm64.deb ... 441s Unpacking libtbbbind-2-5:arm64 (2022.1.0-1) ... 441s Selecting previously unselected package libtbbmalloc2:arm64. 441s Preparing to unpack .../102-libtbbmalloc2_2022.1.0-1_arm64.deb ... 441s Unpacking libtbbmalloc2:arm64 (2022.1.0-1) ... 441s Selecting previously unselected package libtbb12:arm64. 441s Preparing to unpack .../103-libtbb12_2022.1.0-1_arm64.deb ... 441s Unpacking libtbb12:arm64 (2022.1.0-1) ... 442s Selecting previously unselected package libtcl8.6:arm64. 442s Preparing to unpack .../104-libtcl8.6_8.6.17+dfsg-1_arm64.deb ... 442s Unpacking libtcl8.6:arm64 (8.6.17+dfsg-1) ... 442s Selecting previously unselected package libtheoradec1:arm64. 442s Preparing to unpack .../105-libtheoradec1_1.2.0~alpha1+dfsg-6_arm64.deb ... 442s Unpacking libtheoradec1:arm64 (1.2.0~alpha1+dfsg-6) ... 442s Selecting previously unselected package libtheoraenc1:arm64. 442s Preparing to unpack .../106-libtheoraenc1_1.2.0~alpha1+dfsg-6_arm64.deb ... 442s Unpacking libtheoraenc1:arm64 (1.2.0~alpha1+dfsg-6) ... 442s Selecting previously unselected package libxft2:arm64. 442s Preparing to unpack .../107-libxft2_2.3.6-1build1_arm64.deb ... 442s Unpacking libxft2:arm64 (2.3.6-1build1) ... 442s Selecting previously unselected package x11-common. 442s Preparing to unpack .../108-x11-common_1%3a7.7+24ubuntu1_all.deb ... 442s Unpacking x11-common (1:7.7+24ubuntu1) ... 442s Selecting previously unselected package libxss1:arm64. 442s Preparing to unpack .../109-libxss1_1%3a1.2.3-1build3_arm64.deb ... 442s Unpacking libxss1:arm64 (1:1.2.3-1build3) ... 442s Selecting previously unselected package libtk8.6:arm64. 442s Preparing to unpack .../110-libtk8.6_8.6.17-1_arm64.deb ... 442s Unpacking libtk8.6:arm64 (8.6.17-1) ... 442s Selecting previously unselected package libvtk9.3:arm64. 442s Preparing to unpack .../111-libvtk9.3_9.3.0+dfsg1-4ubuntu2_arm64.deb ... 442s Unpacking libvtk9.3:arm64 (9.3.0+dfsg1-4ubuntu2) ... 443s Selecting previously unselected package liblammps0t64:arm64. 443s Preparing to unpack .../112-liblammps0t64_20250204+dfsg.1-2_arm64.deb ... 443s Unpacking liblammps0t64:arm64 (20250204+dfsg.1-2) ... 443s Selecting previously unselected package openmpi-common. 443s Preparing to unpack .../113-openmpi-common_5.0.8-8ubuntu1_all.deb ... 443s Unpacking openmpi-common (5.0.8-8ubuntu1) ... 443s Selecting previously unselected package libnl-3-dev:arm64. 443s Preparing to unpack .../114-libnl-3-dev_3.7.0-2build1_arm64.deb ... 443s Unpacking libnl-3-dev:arm64 (3.7.0-2build1) ... 443s Selecting previously unselected package libnl-route-3-dev:arm64. 443s Preparing to unpack .../115-libnl-route-3-dev_3.7.0-2build1_arm64.deb ... 443s Unpacking libnl-route-3-dev:arm64 (3.7.0-2build1) ... 443s Selecting previously unselected package libibverbs-dev:arm64. 443s Preparing to unpack .../116-libibverbs-dev_56.1-1ubuntu1_arm64.deb ... 443s Unpacking libibverbs-dev:arm64 (56.1-1ubuntu1) ... 443s Selecting previously unselected package libnuma-dev:arm64. 443s Preparing to unpack .../117-libnuma-dev_2.0.19-1_arm64.deb ... 443s Unpacking libnuma-dev:arm64 (2.0.19-1) ... 443s Selecting previously unselected package libltdl7:arm64. 443s Preparing to unpack .../118-libltdl7_2.5.4-4build1_arm64.deb ... 443s Unpacking libltdl7:arm64 (2.5.4-4build1) ... 443s Selecting previously unselected package libltdl-dev:arm64. 443s Preparing to unpack .../119-libltdl-dev_2.5.4-4build1_arm64.deb ... 443s Unpacking libltdl-dev:arm64 (2.5.4-4build1) ... 443s Selecting previously unselected package libhwloc-dev:arm64. 443s Preparing to unpack .../120-libhwloc-dev_2.12.2-1_arm64.deb ... 443s Unpacking libhwloc-dev:arm64 (2.12.2-1) ... 443s Selecting previously unselected package zlib1g-dev:arm64. 443s Preparing to unpack .../121-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu2_arm64.deb ... 443s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu2) ... 443s Selecting previously unselected package openmpi-bin. 443s Preparing to unpack .../122-openmpi-bin_5.0.8-8ubuntu1_arm64.deb ... 443s Unpacking openmpi-bin (5.0.8-8ubuntu1) ... 443s Selecting previously unselected package libopenmpi-dev:arm64. 443s Preparing to unpack .../123-libopenmpi-dev_5.0.8-8ubuntu1_arm64.deb ... 443s Unpacking libopenmpi-dev:arm64 (5.0.8-8ubuntu1) ... 443s Selecting previously unselected package mpi-default-dev. 443s Preparing to unpack .../124-mpi-default-dev_1.18_arm64.deb ... 443s Unpacking mpi-default-dev (1.18) ... 443s Selecting previously unselected package liblammps-dev. 443s Preparing to unpack .../125-liblammps-dev_20250204+dfsg.1-2_arm64.deb ... 443s Unpacking liblammps-dev (20250204+dfsg.1-2) ... 443s Selecting previously unselected package mpi-default-bin. 443s Preparing to unpack .../126-mpi-default-bin_1.18_arm64.deb ... 443s Unpacking mpi-default-bin (1.18) ... 443s Selecting previously unselected package python3-lammps. 443s Preparing to unpack .../127-python3-lammps_20250204+dfsg.1-2_arm64.deb ... 443s Unpacking python3-lammps (20250204+dfsg.1-2) ... 444s Setting up libxcb-dri3-0:arm64 (1.17.0-2build1) ... 444s Setting up libtbbmalloc2:arm64 (2022.1.0-1) ... 444s Setting up libpixman-1-0:arm64 (0.44.0-3) ... 444s Setting up libsharpyuv0:arm64 (1.5.0-0.1) ... 444s Setting up libx11-xcb1:arm64 (2:1.8.12-1build1) ... 444s Setting up libpciaccess0:arm64 (0.18.1-1ubuntu2) ... 444s Setting up libdouble-conversion3:arm64 (3.3.1-1build1) ... 444s Setting up libxcb-xfixes0:arm64 (1.17.0-2build1) ... 444s Setting up libogg0:arm64 (1.3.5-3build1) ... 444s Setting up liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 444s Setting up proj-data (9.6.0-1) ... 444s Setting up libxrender1:arm64 (1:0.9.12-1) ... 444s Setting up libxcb-render0:arm64 (1.17.0-2build1) ... 444s Setting up libglvnd0:arm64 (1.7.0-1build2) ... 444s Setting up libxcb-glx0:arm64 (1.17.0-2build1) ... 444s Setting up x11-common (1:7.7+24ubuntu1) ... 444s Setting up libibumad3:arm64 (56.1-1ubuntu1) ... 444s Setting up libdeflate0:arm64 (1.23-2) ... 444s Setting up m4 (1.4.19-8) ... 444s Setting up libevent-2.1-7t64:arm64 (2.1.12-stable-10build1) ... 444s Setting up libxcb-shm0:arm64 (1.17.0-2build1) ... 444s Setting up libibmad5:arm64 (56.1-1ubuntu1) ... 444s Setting up libgomp1:arm64 (15.2.0-5ubuntu1) ... 444s Setting up libjbig0:arm64 (2.1-6.1ubuntu2) ... 444s Setting up libaec0:arm64 (1.1.3-1) ... 444s Setting up libopengl0:arm64 (1.7.0-1build2) ... 444s Setting up libxxf86vm1:arm64 (1:1.1.4-1build4) ... 444s Setting up libnuma-dev:arm64 (2.0.19-1) ... 444s Setting up libxnvctrl0:arm64 (510.47.03-0ubuntu4) ... 444s Setting up libxcb-present0:arm64 (1.17.0-2build1) ... 444s Setting up libtheoraenc1:arm64 (1.2.0~alpha1+dfsg-6) ... 444s Setting up autotools-dev (20240727.1) ... 444s Setting up libblas3:arm64 (3.12.1-6build1) ... 444s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 444s Setting up libllvm17t64:arm64 (1:17.0.6-22build1) ... 444s Setting up libxcb-sync1:arm64 (1.17.0-2build1) ... 444s Setting up libjsoncpp26:arm64 (1.9.6-3) ... 444s Setting up fonts-dejavu-mono (2.37-8) ... 444s Setting up libhwloc15:arm64 (2.12.2-1) ... 444s Setting up libmpc3:arm64 (1.3.1-1build3) ... 444s Setting up libtcl8.6:arm64 (8.6.17+dfsg-1) ... 444s Setting up fonts-dejavu-core (2.37-8) ... 444s Setting up libjpeg-turbo8:arm64 (2.1.5-4ubuntu2) ... 444s Setting up libltdl7:arm64 (2.5.4-4build1) ... 444s Setting up libfftw3-double3:arm64 (3.3.10-2fakesync1build2) ... 444s Setting up libgfortran5:arm64 (15.2.0-5ubuntu1) ... 444s Setting up libvulkan1:arm64 (1.4.321.0-1) ... 444s Setting up autoconf (2.72-3.1ubuntu1) ... 444s Setting up libwebp7:arm64 (1.5.0-0.1) ... 444s Setting up libubsan1:arm64 (15.2.0-5ubuntu1) ... 444s Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu2) ... 444s Setting up libnl-3-dev:arm64 (3.7.0-2build1) ... 444s Setting up ocl-icd-libopencl1:arm64 (2.3.3-1) ... 444s Setting up libxshmfence1:arm64 (1.3.3-1) ... 444s Setting up libhwasan0:arm64 (15.2.0-5ubuntu1) ... 444s Setting up libxcb-randr0:arm64 (1.17.0-2build1) ... 444s Setting up libasan8:arm64 (15.2.0-5ubuntu1) ... 444s Setting up openmpi-common (5.0.8-8ubuntu1) ... 444s Setting up librdmacm1t64:arm64 (56.1-1ubuntu1) ... 444s Setting up libevent-core-2.1-7t64:arm64 (2.1.12-stable-10build1) ... 444s Setting up libamd-comgr2:arm64 (6.0+git20231212.4510c28+dfsg-3build3) ... 444s Setting up libxss1:arm64 (1:1.2.3-1build3) ... 444s Setting up libtsan2:arm64 (15.2.0-5ubuntu1) ... 444s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 444s Setting up libisl23:arm64 (0.27-1) ... 444s Setting up libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ... 444s Setting up libcc1-0:arm64 (15.2.0-5ubuntu1) ... 444s Setting up liblsan0:arm64 (15.2.0-5ubuntu1) ... 444s Setting up libsz2:arm64 (1.1.3-1) ... 444s Setting up libitm1:arm64 (15.2.0-5ubuntu1) ... 444s Setting up libdrm-amdgpu1:arm64 (2.4.125-1) ... 444s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 444s Setting up automake (1:1.17-4ubuntu1) ... 444s update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode 444s Setting up libfabric1:arm64 (2.1.0-1.1) ... 444s Setting up cpp-15-aarch64-linux-gnu (15.2.0-5ubuntu1) ... 444s Setting up mesa-libgallium:arm64 (25.2.3-1ubuntu1) ... 444s Setting up liblapack3:arm64 (3.12.1-6build1) ... 444s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 444s Setting up libgcc-15-dev:arm64 (15.2.0-5ubuntu1) ... 444s Setting up libgbm1:arm64 (25.2.3-1ubuntu1) ... 444s Setting up libevent-pthreads-2.1-7t64:arm64 (2.1.12-stable-10build1) ... 444s Setting up fontconfig-config (2.15.0-2.3ubuntu1) ... 444s Setting up libevent-openssl-2.1-7t64:arm64 (2.1.12-stable-10build1) ... 444s Setting up libgl1-mesa-dri:arm64 (25.2.3-1ubuntu1) ... 444s Setting up libkim-api2:arm64 (2.3.0-1ubuntu1) ... 444s Setting up libhwloc-plugins:arm64 (2.12.2-1) ... 444s Setting up libgfortran-15-dev:arm64 (15.2.0-5ubuntu1) ... 444s Setting up libtbbbind-2-5:arm64 (2022.1.0-1) ... 444s Setting up libnl-route-3-dev:arm64 (3.7.0-2build1) ... 444s Setting up libltdl-dev:arm64 (2.5.4-4build1) ... 444s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 444s Setting up libevent-extra-2.1-7t64:arm64 (2.1.12-stable-10build1) ... 444s Setting up libhdf5-310:arm64 (1.14.5+repack-3build1) ... 444s Setting up cpp-15 (15.2.0-5ubuntu1) ... 444s Setting up libtiff6:arm64 (4.7.0-3ubuntu3) ... 444s Setting up libhwloc-dev:arm64 (2.12.2-1) ... 444s Setting up libfontconfig1:arm64 (2.15.0-2.3ubuntu1) ... 444s Setting up libhsakmt1:arm64 (6.2.4+ds-1) ... 444s Setting up libhdf5-hl-310:arm64 (1.14.5+repack-3build1) ... 444s Setting up libxft2:arm64 (2.3.6-1build1) ... 444s Setting up libglx-mesa0:arm64 (25.2.3-1ubuntu1) ... 444s Setting up gcc-15-aarch64-linux-gnu (15.2.0-5ubuntu1) ... 444s Setting up libglx0:arm64 (1.7.0-1build2) ... 444s Setting up libproj25:arm64 (9.6.0-1) ... 444s Setting up libtk8.6:arm64 (8.6.17-1) ... 444s Setting up libnetcdf22:arm64 (1:4.9.3-1build1) ... 444s Setting up libtbb12:arm64 (2022.1.0-1) ... 444s Setting up libibverbs-dev:arm64 (56.1-1ubuntu1) ... 444s Setting up libcairo2:arm64 (1.18.4-1build1) ... 444s Setting up gcc-15 (15.2.0-5ubuntu1) ... 444s Setting up libgl1:arm64 (1.7.0-1build2) ... 444s Setting up libtheoradec1:arm64 (1.2.0~alpha1+dfsg-6) ... 444s Setting up gfortran-15-aarch64-linux-gnu (15.2.0-5ubuntu1) ... 444s Setting up libevent-dev (2.1.12-stable-10build1) ... 444s Setting up libglew2.2:arm64 (2.2.0-4build1) ... 444s Setting up libhsa-runtime64-1:arm64 (6.1.2-3) ... 444s Setting up gfortran-15 (15.2.0-5ubuntu1) ... 444s Setting up libgl2ps1.4 (1.4.2+dfsg1-2build1) ... 444s Setting up libamdhip64-5:arm64 (5.7.1-6) ... 444s Setting up libucx0:arm64 (1.19.0+ds-1) ... 444s Setting up libopenmpi40:arm64 (5.0.8-8ubuntu1) ... 444s Setting up libpnetcdf6:arm64 (1.14.0-2) ... 444s Setting up libvtk9.3:arm64 (9.3.0+dfsg1-4ubuntu2) ... 444s Setting up openmpi-bin (5.0.8-8ubuntu1) ... 444s update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode 444s update-alternatives: warning: skip creation of /usr/share/man/man1/mpiexec.1.gz because associated file /usr/share/man/man1/mpiexec.openmpi.1.gz (of link group mpirun) doesn't exist 444s update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode 444s Setting up mpi-default-bin (1.18) ... 444s Setting up liblammps0t64:arm64 (20250204+dfsg.1-2) ... 444s Setting up libopenmpi-dev:arm64 (5.0.8-8ubuntu1) ... 444s update-alternatives: using /usr/lib/aarch64-linux-gnu/openmpi/include to provide /usr/include/aarch64-linux-gnu/mpi (mpi-aarch64-linux-gnu) in auto mode 444s Setting up mpi-default-dev (1.18) ... 444s Setting up liblammps-dev (20250204+dfsg.1-2) ... 444s Setting up python3-lammps (20250204+dfsg.1-2) ... 444s Processing triggers for man-db (2.13.1-1) ... 445s Processing triggers for install-info (7.1.1-1ubuntu1) ... 446s Processing triggers for libc-bin (2.42-0ubuntu3) ... 470s autopkgtest [18:45:52]: test command1: cd python/examples; python3 demo.py 470s autopkgtest [18:45:52]: test command1: [----------------------- 470s LAMMPS (4 Feb 2025) 471s 471s Python output: 471s Natoms, mass, x[0][0] coord = 4000 1.0 16.651271530416228 471s Temperature from compute = 0.7683848148006238 471s Energy from equal-style variable = -5.774392400140566 471s Velocity component from atom-style variable = -0.1669643026996425 471s Volume from get_thermo = 4738.213693437576 471s Natoms from get_natoms = 4000 471s Global coords from gather_atoms = 16.651271530416228 16.790010773016775 0.19047524160174037 471s Changed x[0][0] via scatter_atoms = 17.651271530416228 471s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 471s using 1 OpenMP thread(s) per MPI task 471s Lattice spacing in x,y,z = 1.6795962 1.6795962 1.6795962 471s Created orthogonal box = (0 0 0) to (16.795962 16.795962 16.795962) 471s 1 by 1 by 1 MPI processor grid 471s Created 4000 atoms 471s using lattice units in orthogonal box = (0 0 0) to (16.795962 16.795962 16.795962) 471s create_atoms CPU = 0.001 seconds 471s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 471s Neighbor list info ... 471s update: every = 20 steps, delay = 0 steps, check = no 471s max neighbors/atom: 2000, page size: 100000 471s master list distance cutoff = 2.8 471s ghost atom cutoff = 2.8 471s binsize = 1.4, bins = 12 12 12 471s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 471s (1) pair lj/cut, perpetual 471s attributes: half, newton on 471s pair build: half/bin/atomonly/newton 471s stencil: half/bin/3d 471s bin: standard 471s Setting up Verlet run ... 471s Unit style : lj 471s Current step : 0 471s Time step : 0.005 471s Per MPI rank memory allocation (min/avg/max) = 3.763 | 3.763 | 3.763 Mbytes 471s Step Temp E_pair E_mol TotEng Press 471s 0 1.44 -6.7733681 0 -4.6139081 -5.0199732 471s 100 0.76838481 -5.7743924 0 -4.6221033 0.13682061 471s Loop time of 0.226281 on 1 procs for 100 steps with 4000 atoms 471s 471s Performance: 190913.160 tau/day, 441.929 timesteps/s, 1.768 Matom-step/s 471s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads 471s 471s MPI task timing breakdown: 471s Section | min time | avg time | max time |%varavg| %total 471s --------------------------------------------------------------- 471s Pair | 0.18973 | 0.18973 | 0.18973 | 0.0 | 83.85 471s Neigh | 0.027468 | 0.027468 | 0.027468 | 0.0 | 12.14 471s Comm | 0.0045698 | 0.0045698 | 0.0045698 | 0.0 | 2.02 471s Output | 3.468e-05 | 3.468e-05 | 3.468e-05 | 0.0 | 0.02 471s Modify | 0.0038821 | 0.0038821 | 0.0038821 | 0.0 | 1.72 471s Other | | 0.0005958 | | | 0.26 471s 471s Nlocal: 4000 ave 4000 max 4000 min 471s Histogram: 1 0 0 0 0 0 0 0 0 0 471s Nghost: 5758 ave 5758 max 5758 min 471s Histogram: 1 0 0 0 0 0 0 0 0 0 471s Neighs: 150488 ave 150488 max 150488 min 471s Histogram: 1 0 0 0 0 0 0 0 0 0 471s 471s Total # of neighbors = 150488 471s Ave neighs/atom = 37.622 471s Neighbor list builds = 5 471s Dangerous builds not checked 471s Total wall time: 0:00:00 471s autopkgtest [18:45:53]: test command1: -----------------------] 471s autopkgtest [18:45:53]: test command1: - - - - - - - - - - results - - - - - - - - - - 471s command1 PASS 472s autopkgtest [18:45:54]: @@@@@@@@@@@@@@@@@@@@ summary 472s crack PASS 472s dipole PASS 472s ellipse PASS 472s flow PASS 472s friction PASS 472s hugo PASS 472s command1 PASS