0s autopkgtest [17:40:42]: starting date and time: 2025-10-25 17:40:42+0000 0s autopkgtest [17:40:42]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [17:40:42]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.a1mb_qdw/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:rust-coreutils --apt-upgrade lambda-align2 --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=rust-coreutils/0.3.0-0ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-16.secgroup --name adt-resolute-arm64-lambda-align2-20251025-174042-juju-7f2275-prod-proposed-migration-environment-2-245004c1-3fe6-4f8c-8bc2-245b5aeb45b0 --image adt/ubuntu-resolute-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 5s Creating nova instance adt-resolute-arm64-lambda-align2-20251025-174042-juju-7f2275-prod-proposed-migration-environment-2-245004c1-3fe6-4f8c-8bc2-245b5aeb45b0 from image adt/ubuntu-resolute-arm64-server-20251025.img (UUID 6491d870-702f-4913-be78-1d4d09e30cce)... 77s autopkgtest [17:41:59]: testbed dpkg architecture: arm64 77s autopkgtest [17:41:59]: testbed apt version: 3.1.8ubuntu1 77s autopkgtest [17:41:59]: @@@@@@@@@@@@@@@@@@@@ test bed setup 78s autopkgtest [17:42:00]: testbed release detected to be: None 79s autopkgtest [17:42:01]: updating testbed package index (apt update) 79s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [87.8 kB] 80s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 80s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 80s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 80s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [5028 B] 80s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [61.5 kB] 80s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [466 kB] 80s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [15.0 kB] 80s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 Packages [161 kB] 80s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 c-n-f Metadata [4256 B] 80s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 Packages [43.8 kB] 80s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 c-n-f Metadata [324 B] 80s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 Packages [348 kB] 81s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 c-n-f Metadata [8632 B] 81s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 Packages [6432 B] 81s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 c-n-f Metadata [376 B] 83s Fetched 1208 kB in 2s (743 kB/s) 84s Reading package lists... 85s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 85s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 85s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 85s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 87s Reading package lists... 87s Reading package lists... 87s Building dependency tree... 87s Reading state information... 88s Calculating upgrade... 88s The following packages will be upgraded: 88s bind9-dnsutils bind9-host bind9-libs python3-jwt python3-openssl 88s rust-coreutils 89s 6 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 89s Need to get 4829 kB of archives. 89s After this operation, 75.8 kB of additional disk space will be used. 89s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 rust-coreutils arm64 0.3.0-0ubuntu2 [3227 kB] 91s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 bind9-dnsutils arm64 1:9.20.11-1ubuntu3 [170 kB] 91s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 bind9-host arm64 1:9.20.11-1ubuntu3 [49.9 kB] 91s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 bind9-libs arm64 1:9.20.11-1ubuntu3 [1314 kB] 91s Get:5 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-jwt all 2.10.1-3 [21.1 kB] 91s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-openssl all 25.1.0-1 [46.4 kB] 92s dpkg-preconfigure: unable to re-open stdin: No such file or directory 92s Fetched 4829 kB in 2s (1948 kB/s) 92s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83380 files and directories currently installed.) 92s Preparing to unpack .../rust-coreutils_0.3.0-0ubuntu2_arm64.deb ... 92s Unpacking rust-coreutils (0.3.0-0ubuntu2) over (0.2.2-0ubuntu2) ... 93s Setting up rust-coreutils (0.3.0-0ubuntu2) ... 93s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83440 files and directories currently installed.) 93s Preparing to unpack .../bind9-dnsutils_1%3a9.20.11-1ubuntu3_arm64.deb ... 93s Unpacking bind9-dnsutils (1:9.20.11-1ubuntu3) over (1:9.20.11-1ubuntu2) ... 93s Preparing to unpack .../bind9-host_1%3a9.20.11-1ubuntu3_arm64.deb ... 93s Unpacking bind9-host (1:9.20.11-1ubuntu3) over (1:9.20.11-1ubuntu2) ... 93s Preparing to unpack .../bind9-libs_1%3a9.20.11-1ubuntu3_arm64.deb ... 93s Unpacking bind9-libs:arm64 (1:9.20.11-1ubuntu3) over (1:9.20.11-1ubuntu2) ... 93s Preparing to unpack .../python3-jwt_2.10.1-3_all.deb ... 94s Unpacking python3-jwt (2.10.1-3) over (2.10.1-2) ... 94s Preparing to unpack .../python3-openssl_25.1.0-1_all.deb ... 94s Unpacking python3-openssl (25.1.0-1) over (25.0.0-1) ... 94s Setting up bind9-libs:arm64 (1:9.20.11-1ubuntu3) ... 94s Setting up python3-jwt (2.10.1-3) ... 94s Setting up python3-openssl (25.1.0-1) ... 95s Setting up bind9-host (1:9.20.11-1ubuntu3) ... 95s Setting up bind9-dnsutils (1:9.20.11-1ubuntu3) ... 95s Processing triggers for man-db (2.13.1-1) ... 96s Processing triggers for libc-bin (2.42-0ubuntu3) ... 96s autopkgtest [17:42:18]: upgrading testbed (apt dist-upgrade and autopurge) 96s Reading package lists... 97s Building dependency tree... 97s Reading state information... 97s Calculating upgrade... 98s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 98s Reading package lists... 98s Building dependency tree... 98s Reading state information... 99s Solving dependencies... 99s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 102s autopkgtest [17:42:24]: testbed running kernel: Linux 6.17.0-5-generic #5-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 22 09:50:31 UTC 2025 103s autopkgtest [17:42:25]: @@@@@@@@@@@@@@@@@@@@ apt-source lambda-align2 105s Get:1 http://ftpmaster.internal/ubuntu resolute/universe lambda-align2 2.0.1-3 (dsc) [2178 B] 105s Get:2 http://ftpmaster.internal/ubuntu resolute/universe lambda-align2 2.0.1-3 (tar) [346 kB] 105s Get:3 http://ftpmaster.internal/ubuntu resolute/universe lambda-align2 2.0.1-3 (diff) [17.6 kB] 105s gpgv: Signature made Thu Nov 28 15:59:17 2024 UTC 105s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 105s gpgv: Can't check signature: No public key 105s dpkg-source: warning: cannot verify inline signature for ./lambda-align2_2.0.1-3.dsc: no acceptable signature found 105s autopkgtest [17:42:27]: testing package lambda-align2 version 2.0.1-3 106s autopkgtest [17:42:28]: build not needed 107s autopkgtest [17:42:29]: test run-tests: preparing testbed 107s Reading package lists... 107s Building dependency tree... 107s Reading state information... 108s Solving dependencies... 108s The following NEW packages will be installed: 108s autoconf automake autopoint autotools-dev build-essential cmake cmake-data 108s cpp cpp-15 cpp-15-aarch64-linux-gnu cpp-aarch64-linux-gnu debhelper 108s debugedit dh-autoreconf dh-strip-nondeterminism dwz g++ g++-15 108s g++-15-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-15 108s gcc-15-aarch64-linux-gnu gcc-aarch64-linux-gnu gettext intltool-debian 108s lambda-align2 libarchive-zip-perl libasan8 libbz2-dev libcc1-0 108s libdebhelper-perl libfile-stripnondeterminism-perl libgcc-15-dev libgomp1 108s libhwasan0 libisl23 libitm1 libjsoncpp26 liblsan0 libmbedcrypto16 108s libmbedtls21 libmbedx509-7 libmpc3 libncbi-vdb3 librhash1 libseqan2-dev 108s libstdc++-15-dev libtool libtsan2 libubsan1 m4 ncbi-blast+ ncbi-data 108s ncbi-vdb-data po-debconf zlib1g-dev 108s 0 upgraded, 57 newly installed, 0 to remove and 0 not upgraded. 108s Need to get 108 MB of archives. 108s After this operation, 406 MB of additional disk space will be used. 108s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 m4 arm64 1.4.19-8 [244 kB] 109s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 autoconf all 2.72-3.1ubuntu1 [384 kB] 109s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 autotools-dev all 20240727.1 [43.4 kB] 109s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 automake all 1:1.17-4ubuntu1 [572 kB] 109s Get:5 http://ftpmaster.internal/ubuntu resolute/main arm64 autopoint all 0.23.1-2build2 [619 kB] 109s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 libisl23 arm64 0.27-1 [676 kB] 110s Get:7 http://ftpmaster.internal/ubuntu resolute/main arm64 libmpc3 arm64 1.3.1-1build3 [58.9 kB] 110s Get:8 http://ftpmaster.internal/ubuntu resolute/main arm64 cpp-15-aarch64-linux-gnu arm64 15.2.0-5ubuntu1 [11.7 MB] 111s Get:9 http://ftpmaster.internal/ubuntu resolute/main arm64 cpp-15 arm64 15.2.0-5ubuntu1 [1028 B] 111s Get:10 http://ftpmaster.internal/ubuntu resolute/main arm64 cpp-aarch64-linux-gnu arm64 4:15.2.0-4ubuntu1 [5736 B] 111s Get:11 http://ftpmaster.internal/ubuntu resolute/main arm64 cpp arm64 4:15.2.0-4ubuntu1 [22.4 kB] 111s Get:12 http://ftpmaster.internal/ubuntu resolute/main arm64 libcc1-0 arm64 15.2.0-5ubuntu1 [49.2 kB] 111s Get:13 http://ftpmaster.internal/ubuntu resolute/main arm64 libgomp1 arm64 15.2.0-5ubuntu1 [148 kB] 111s Get:14 http://ftpmaster.internal/ubuntu resolute/main arm64 libitm1 arm64 15.2.0-5ubuntu1 [28.1 kB] 111s Get:15 http://ftpmaster.internal/ubuntu resolute/main arm64 libasan8 arm64 15.2.0-5ubuntu1 [2922 kB] 111s Get:16 http://ftpmaster.internal/ubuntu resolute/main arm64 liblsan0 arm64 15.2.0-5ubuntu1 [1316 kB] 112s Get:17 http://ftpmaster.internal/ubuntu resolute/main arm64 libtsan2 arm64 15.2.0-5ubuntu1 [2689 kB] 112s Get:18 http://ftpmaster.internal/ubuntu resolute/main arm64 libubsan1 arm64 15.2.0-5ubuntu1 [1176 kB] 112s Get:19 http://ftpmaster.internal/ubuntu resolute/main arm64 libhwasan0 arm64 15.2.0-5ubuntu1 [1639 kB] 112s Get:20 http://ftpmaster.internal/ubuntu resolute/main arm64 libgcc-15-dev arm64 15.2.0-5ubuntu1 [2601 kB] 112s Get:21 http://ftpmaster.internal/ubuntu resolute/main arm64 gcc-15-aarch64-linux-gnu arm64 15.2.0-5ubuntu1 [23.1 MB] 113s Get:22 http://ftpmaster.internal/ubuntu resolute/main arm64 gcc-15 arm64 15.2.0-5ubuntu1 [512 kB] 113s Get:23 http://ftpmaster.internal/ubuntu resolute/main arm64 gcc-aarch64-linux-gnu arm64 4:15.2.0-4ubuntu1 [1206 B] 113s Get:24 http://ftpmaster.internal/ubuntu resolute/main arm64 gcc arm64 4:15.2.0-4ubuntu1 [5016 B] 113s Get:25 http://ftpmaster.internal/ubuntu resolute/main arm64 libstdc++-15-dev arm64 15.2.0-5ubuntu1 [2545 kB] 113s Get:26 http://ftpmaster.internal/ubuntu resolute/main arm64 g++-15-aarch64-linux-gnu arm64 15.2.0-5ubuntu1 [13.2 MB] 113s Get:27 http://ftpmaster.internal/ubuntu resolute/main arm64 g++-15 arm64 15.2.0-5ubuntu1 [23.7 kB] 113s Get:28 http://ftpmaster.internal/ubuntu resolute/main arm64 g++-aarch64-linux-gnu arm64 4:15.2.0-4ubuntu1 [956 B] 113s Get:29 http://ftpmaster.internal/ubuntu resolute/main arm64 g++ arm64 4:15.2.0-4ubuntu1 [1080 B] 113s Get:30 http://ftpmaster.internal/ubuntu resolute/main arm64 build-essential arm64 12.12ubuntu1 [5082 B] 113s Get:31 http://ftpmaster.internal/ubuntu resolute/main arm64 cmake-data all 3.31.6-2ubuntu6 [2295 kB] 113s Get:32 http://ftpmaster.internal/ubuntu resolute/main arm64 libjsoncpp26 arm64 1.9.6-3 [78.7 kB] 113s Get:33 http://ftpmaster.internal/ubuntu resolute/main arm64 librhash1 arm64 1.4.6-1 [131 kB] 113s Get:34 http://ftpmaster.internal/ubuntu resolute/main arm64 cmake arm64 3.31.6-2ubuntu6 [11.6 MB] 114s Get:35 http://ftpmaster.internal/ubuntu resolute/main arm64 libdebhelper-perl all 13.24.2ubuntu1 [95.7 kB] 114s Get:36 http://ftpmaster.internal/ubuntu resolute/main arm64 libtool all 2.5.4-4build1 [169 kB] 114s Get:37 http://ftpmaster.internal/ubuntu resolute/main arm64 dh-autoreconf all 21 [12.5 kB] 114s Get:38 http://ftpmaster.internal/ubuntu resolute/main arm64 libarchive-zip-perl all 1.68-1 [90.2 kB] 114s Get:39 http://ftpmaster.internal/ubuntu resolute/main arm64 libfile-stripnondeterminism-perl all 1.14.2-1 [20.4 kB] 114s Get:40 http://ftpmaster.internal/ubuntu resolute/main arm64 dh-strip-nondeterminism all 1.14.2-1 [5098 B] 114s Get:41 http://ftpmaster.internal/ubuntu resolute/main arm64 debugedit arm64 1:5.2-3 [49.1 kB] 114s Get:42 http://ftpmaster.internal/ubuntu resolute/main arm64 dwz arm64 0.16-2 [113 kB] 114s Get:43 http://ftpmaster.internal/ubuntu resolute/main arm64 gettext arm64 0.23.1-2build2 [1026 kB] 114s Get:44 http://ftpmaster.internal/ubuntu resolute/main arm64 intltool-debian all 0.35.0+20060710.6 [23.2 kB] 114s Get:45 http://ftpmaster.internal/ubuntu resolute/main arm64 po-debconf all 1.0.21+nmu1 [233 kB] 114s Get:46 http://ftpmaster.internal/ubuntu resolute/main arm64 debhelper all 13.24.2ubuntu1 [896 kB] 114s Get:47 http://ftpmaster.internal/ubuntu resolute/universe arm64 lambda-align2 arm64 2.0.1-3 [1340 kB] 114s Get:48 http://ftpmaster.internal/ubuntu resolute/main arm64 libbz2-dev arm64 1.0.8-6build1 [36.2 kB] 114s Get:49 http://ftpmaster.internal/ubuntu resolute/universe arm64 libmbedcrypto16 arm64 3.6.2-3ubuntu1 [258 kB] 114s Get:50 http://ftpmaster.internal/ubuntu resolute/universe arm64 libmbedx509-7 arm64 3.6.2-3ubuntu1 [35.7 kB] 114s Get:51 http://ftpmaster.internal/ubuntu resolute/universe arm64 libmbedtls21 arm64 3.6.2-3ubuntu1 [122 kB] 114s Get:52 http://ftpmaster.internal/ubuntu resolute/universe arm64 ncbi-vdb-data all 3.2.1+dfsg-2 [81.3 kB] 114s Get:53 http://ftpmaster.internal/ubuntu resolute/universe arm64 libncbi-vdb3 arm64 3.2.1+dfsg-2 [1259 kB] 114s Get:54 http://ftpmaster.internal/ubuntu resolute/universe arm64 libseqan2-dev all 2.4.0+dfsg-16 [1206 kB] 114s Get:55 http://ftpmaster.internal/ubuntu resolute/universe arm64 ncbi-data all 6.1.20170106+dfsg2-6 [3969 kB] 114s Get:56 http://ftpmaster.internal/ubuntu resolute/universe arm64 ncbi-blast+ arm64 2.16.0+ds-7 [15.4 MB] 115s Get:57 http://ftpmaster.internal/ubuntu resolute/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu2 [899 kB] 116s Fetched 108 MB in 7s (15.3 MB/s) 116s Selecting previously unselected package m4. 116s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83440 files and directories currently installed.) 116s Preparing to unpack .../00-m4_1.4.19-8_arm64.deb ... 116s Unpacking m4 (1.4.19-8) ... 116s Selecting previously unselected package autoconf. 116s Preparing to unpack .../01-autoconf_2.72-3.1ubuntu1_all.deb ... 116s Unpacking autoconf (2.72-3.1ubuntu1) ... 116s Selecting previously unselected package autotools-dev. 116s Preparing to unpack .../02-autotools-dev_20240727.1_all.deb ... 116s Unpacking autotools-dev (20240727.1) ... 116s Selecting previously unselected package automake. 116s Preparing to unpack .../03-automake_1%3a1.17-4ubuntu1_all.deb ... 116s Unpacking automake (1:1.17-4ubuntu1) ... 116s Selecting previously unselected package autopoint. 116s Preparing to unpack .../04-autopoint_0.23.1-2build2_all.deb ... 116s Unpacking autopoint (0.23.1-2build2) ... 116s Selecting previously unselected package libisl23:arm64. 116s Preparing to unpack .../05-libisl23_0.27-1_arm64.deb ... 116s Unpacking libisl23:arm64 (0.27-1) ... 116s Selecting previously unselected package libmpc3:arm64. 116s Preparing to unpack .../06-libmpc3_1.3.1-1build3_arm64.deb ... 116s Unpacking libmpc3:arm64 (1.3.1-1build3) ... 116s Selecting previously unselected package cpp-15-aarch64-linux-gnu. 116s Preparing to unpack .../07-cpp-15-aarch64-linux-gnu_15.2.0-5ubuntu1_arm64.deb ... 116s Unpacking cpp-15-aarch64-linux-gnu (15.2.0-5ubuntu1) ... 117s Selecting previously unselected package cpp-15. 117s Preparing to unpack .../08-cpp-15_15.2.0-5ubuntu1_arm64.deb ... 117s Unpacking cpp-15 (15.2.0-5ubuntu1) ... 117s Selecting previously unselected package cpp-aarch64-linux-gnu. 117s Preparing to unpack .../09-cpp-aarch64-linux-gnu_4%3a15.2.0-4ubuntu1_arm64.deb ... 117s Unpacking cpp-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 117s Selecting previously unselected package cpp. 117s Preparing to unpack .../10-cpp_4%3a15.2.0-4ubuntu1_arm64.deb ... 117s Unpacking cpp (4:15.2.0-4ubuntu1) ... 117s Selecting previously unselected package libcc1-0:arm64. 117s Preparing to unpack .../11-libcc1-0_15.2.0-5ubuntu1_arm64.deb ... 117s Unpacking libcc1-0:arm64 (15.2.0-5ubuntu1) ... 117s Selecting previously unselected package libgomp1:arm64. 117s Preparing to unpack .../12-libgomp1_15.2.0-5ubuntu1_arm64.deb ... 117s Unpacking libgomp1:arm64 (15.2.0-5ubuntu1) ... 117s Selecting previously unselected package libitm1:arm64. 117s Preparing to unpack .../13-libitm1_15.2.0-5ubuntu1_arm64.deb ... 117s Unpacking libitm1:arm64 (15.2.0-5ubuntu1) ... 117s Selecting previously unselected package libasan8:arm64. 117s Preparing to unpack .../14-libasan8_15.2.0-5ubuntu1_arm64.deb ... 117s Unpacking libasan8:arm64 (15.2.0-5ubuntu1) ... 117s Selecting previously unselected package liblsan0:arm64. 117s Preparing to unpack .../15-liblsan0_15.2.0-5ubuntu1_arm64.deb ... 117s Unpacking liblsan0:arm64 (15.2.0-5ubuntu1) ... 118s Selecting previously unselected package libtsan2:arm64. 118s Preparing to unpack .../16-libtsan2_15.2.0-5ubuntu1_arm64.deb ... 118s Unpacking libtsan2:arm64 (15.2.0-5ubuntu1) ... 118s Selecting previously unselected package libubsan1:arm64. 118s Preparing to unpack .../17-libubsan1_15.2.0-5ubuntu1_arm64.deb ... 118s Unpacking libubsan1:arm64 (15.2.0-5ubuntu1) ... 118s Selecting previously unselected package libhwasan0:arm64. 118s Preparing to unpack .../18-libhwasan0_15.2.0-5ubuntu1_arm64.deb ... 118s Unpacking libhwasan0:arm64 (15.2.0-5ubuntu1) ... 118s Selecting previously unselected package libgcc-15-dev:arm64. 118s Preparing to unpack .../19-libgcc-15-dev_15.2.0-5ubuntu1_arm64.deb ... 118s Unpacking libgcc-15-dev:arm64 (15.2.0-5ubuntu1) ... 118s Selecting previously unselected package gcc-15-aarch64-linux-gnu. 118s Preparing to unpack .../20-gcc-15-aarch64-linux-gnu_15.2.0-5ubuntu1_arm64.deb ... 118s Unpacking gcc-15-aarch64-linux-gnu (15.2.0-5ubuntu1) ... 119s Selecting previously unselected package gcc-15. 119s Preparing to unpack .../21-gcc-15_15.2.0-5ubuntu1_arm64.deb ... 119s Unpacking gcc-15 (15.2.0-5ubuntu1) ... 119s Selecting previously unselected package gcc-aarch64-linux-gnu. 119s Preparing to unpack .../22-gcc-aarch64-linux-gnu_4%3a15.2.0-4ubuntu1_arm64.deb ... 119s Unpacking gcc-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 119s Selecting previously unselected package gcc. 119s Preparing to unpack .../23-gcc_4%3a15.2.0-4ubuntu1_arm64.deb ... 119s Unpacking gcc (4:15.2.0-4ubuntu1) ... 119s Selecting previously unselected package libstdc++-15-dev:arm64. 119s Preparing to unpack .../24-libstdc++-15-dev_15.2.0-5ubuntu1_arm64.deb ... 119s Unpacking libstdc++-15-dev:arm64 (15.2.0-5ubuntu1) ... 119s Selecting previously unselected package g++-15-aarch64-linux-gnu. 120s Preparing to unpack .../25-g++-15-aarch64-linux-gnu_15.2.0-5ubuntu1_arm64.deb ... 120s Unpacking g++-15-aarch64-linux-gnu (15.2.0-5ubuntu1) ... 120s Selecting previously unselected package g++-15. 120s Preparing to unpack .../26-g++-15_15.2.0-5ubuntu1_arm64.deb ... 120s Unpacking g++-15 (15.2.0-5ubuntu1) ... 120s Selecting previously unselected package g++-aarch64-linux-gnu. 120s Preparing to unpack .../27-g++-aarch64-linux-gnu_4%3a15.2.0-4ubuntu1_arm64.deb ... 120s Unpacking g++-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 120s Selecting previously unselected package g++. 120s Preparing to unpack .../28-g++_4%3a15.2.0-4ubuntu1_arm64.deb ... 120s Unpacking g++ (4:15.2.0-4ubuntu1) ... 120s Selecting previously unselected package build-essential. 120s Preparing to unpack .../29-build-essential_12.12ubuntu1_arm64.deb ... 120s Unpacking build-essential (12.12ubuntu1) ... 120s Selecting previously unselected package cmake-data. 120s Preparing to unpack .../30-cmake-data_3.31.6-2ubuntu6_all.deb ... 120s Unpacking cmake-data (3.31.6-2ubuntu6) ... 121s Selecting previously unselected package libjsoncpp26:arm64. 121s Preparing to unpack .../31-libjsoncpp26_1.9.6-3_arm64.deb ... 121s Unpacking libjsoncpp26:arm64 (1.9.6-3) ... 121s Selecting previously unselected package librhash1:arm64. 121s Preparing to unpack .../32-librhash1_1.4.6-1_arm64.deb ... 121s Unpacking librhash1:arm64 (1.4.6-1) ... 121s Selecting previously unselected package cmake. 121s Preparing to unpack .../33-cmake_3.31.6-2ubuntu6_arm64.deb ... 121s Unpacking cmake (3.31.6-2ubuntu6) ... 121s Selecting previously unselected package libdebhelper-perl. 121s Preparing to unpack .../34-libdebhelper-perl_13.24.2ubuntu1_all.deb ... 121s Unpacking libdebhelper-perl (13.24.2ubuntu1) ... 122s Selecting previously unselected package libtool. 122s Preparing to unpack .../35-libtool_2.5.4-4build1_all.deb ... 122s Unpacking libtool (2.5.4-4build1) ... 122s Selecting previously unselected package dh-autoreconf. 122s Preparing to unpack .../36-dh-autoreconf_21_all.deb ... 122s Unpacking dh-autoreconf (21) ... 122s Selecting previously unselected package libarchive-zip-perl. 122s Preparing to unpack .../37-libarchive-zip-perl_1.68-1_all.deb ... 122s Unpacking libarchive-zip-perl (1.68-1) ... 122s Selecting previously unselected package libfile-stripnondeterminism-perl. 122s Preparing to unpack .../38-libfile-stripnondeterminism-perl_1.14.2-1_all.deb ... 122s Unpacking libfile-stripnondeterminism-perl (1.14.2-1) ... 122s Selecting previously unselected package dh-strip-nondeterminism. 122s Preparing to unpack .../39-dh-strip-nondeterminism_1.14.2-1_all.deb ... 122s Unpacking dh-strip-nondeterminism (1.14.2-1) ... 122s Selecting previously unselected package debugedit. 122s Preparing to unpack .../40-debugedit_1%3a5.2-3_arm64.deb ... 122s Unpacking debugedit (1:5.2-3) ... 122s Selecting previously unselected package dwz. 122s Preparing to unpack .../41-dwz_0.16-2_arm64.deb ... 122s Unpacking dwz (0.16-2) ... 122s Selecting previously unselected package gettext. 122s Preparing to unpack .../42-gettext_0.23.1-2build2_arm64.deb ... 122s Unpacking gettext (0.23.1-2build2) ... 122s Selecting previously unselected package intltool-debian. 122s Preparing to unpack .../43-intltool-debian_0.35.0+20060710.6_all.deb ... 122s Unpacking intltool-debian (0.35.0+20060710.6) ... 122s Selecting previously unselected package po-debconf. 122s Preparing to unpack .../44-po-debconf_1.0.21+nmu1_all.deb ... 122s Unpacking po-debconf (1.0.21+nmu1) ... 122s Selecting previously unselected package debhelper. 122s Preparing to unpack .../45-debhelper_13.24.2ubuntu1_all.deb ... 122s Unpacking debhelper (13.24.2ubuntu1) ... 122s Selecting previously unselected package lambda-align2. 122s Preparing to unpack .../46-lambda-align2_2.0.1-3_arm64.deb ... 122s Unpacking lambda-align2 (2.0.1-3) ... 122s Selecting previously unselected package libbz2-dev:arm64. 123s Preparing to unpack .../47-libbz2-dev_1.0.8-6build1_arm64.deb ... 123s Unpacking libbz2-dev:arm64 (1.0.8-6build1) ... 123s Selecting previously unselected package libmbedcrypto16:arm64. 123s Preparing to unpack .../48-libmbedcrypto16_3.6.2-3ubuntu1_arm64.deb ... 123s Unpacking libmbedcrypto16:arm64 (3.6.2-3ubuntu1) ... 123s Selecting previously unselected package libmbedx509-7:arm64. 123s Preparing to unpack .../49-libmbedx509-7_3.6.2-3ubuntu1_arm64.deb ... 123s Unpacking libmbedx509-7:arm64 (3.6.2-3ubuntu1) ... 123s Selecting previously unselected package libmbedtls21:arm64. 123s Preparing to unpack .../50-libmbedtls21_3.6.2-3ubuntu1_arm64.deb ... 123s Unpacking libmbedtls21:arm64 (3.6.2-3ubuntu1) ... 123s Selecting previously unselected package ncbi-vdb-data. 123s Preparing to unpack .../51-ncbi-vdb-data_3.2.1+dfsg-2_all.deb ... 123s Unpacking ncbi-vdb-data (3.2.1+dfsg-2) ... 123s Selecting previously unselected package libncbi-vdb3:arm64. 123s Preparing to unpack .../52-libncbi-vdb3_3.2.1+dfsg-2_arm64.deb ... 123s Unpacking libncbi-vdb3:arm64 (3.2.1+dfsg-2) ... 123s Selecting previously unselected package libseqan2-dev. 123s Preparing to unpack .../53-libseqan2-dev_2.4.0+dfsg-16_all.deb ... 123s Unpacking libseqan2-dev (2.4.0+dfsg-16) ... 123s Selecting previously unselected package ncbi-data. 123s Preparing to unpack .../54-ncbi-data_6.1.20170106+dfsg2-6_all.deb ... 123s Unpacking ncbi-data (6.1.20170106+dfsg2-6) ... 123s Selecting previously unselected package ncbi-blast+. 123s Preparing to unpack .../55-ncbi-blast+_2.16.0+ds-7_arm64.deb ... 123s Unpacking ncbi-blast+ (2.16.0+ds-7) ... 124s Selecting previously unselected package zlib1g-dev:arm64. 124s Preparing to unpack .../56-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu2_arm64.deb ... 124s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu2) ... 124s Setting up ncbi-data (6.1.20170106+dfsg2-6) ... 124s Setting up libarchive-zip-perl (1.68-1) ... 124s Setting up libdebhelper-perl (13.24.2ubuntu1) ... 124s Setting up m4 (1.4.19-8) ... 124s Setting up libgomp1:arm64 (15.2.0-5ubuntu1) ... 124s Setting up libseqan2-dev (2.4.0+dfsg-16) ... 124s Setting up autotools-dev (20240727.1) ... 124s Setting up libjsoncpp26:arm64 (1.9.6-3) ... 124s Setting up lambda-align2 (2.0.1-3) ... 124s Setting up libmpc3:arm64 (1.3.1-1build3) ... 124s Setting up autopoint (0.23.1-2build2) ... 124s Setting up autoconf (2.72-3.1ubuntu1) ... 124s Setting up libubsan1:arm64 (15.2.0-5ubuntu1) ... 124s Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu2) ... 124s Setting up dwz (0.16-2) ... 124s Setting up libhwasan0:arm64 (15.2.0-5ubuntu1) ... 124s Setting up libasan8:arm64 (15.2.0-5ubuntu1) ... 124s Setting up debugedit (1:5.2-3) ... 124s Setting up ncbi-vdb-data (3.2.1+dfsg-2) ... 125s Setting up cmake-data (3.31.6-2ubuntu6) ... 125s Setting up librhash1:arm64 (1.4.6-1) ... 125s Setting up libmbedcrypto16:arm64 (3.6.2-3ubuntu1) ... 125s Setting up libtsan2:arm64 (15.2.0-5ubuntu1) ... 125s Setting up libisl23:arm64 (0.27-1) ... 125s Setting up libcc1-0:arm64 (15.2.0-5ubuntu1) ... 125s Setting up liblsan0:arm64 (15.2.0-5ubuntu1) ... 125s Setting up libitm1:arm64 (15.2.0-5ubuntu1) ... 125s Setting up libbz2-dev:arm64 (1.0.8-6build1) ... 125s Setting up automake (1:1.17-4ubuntu1) ... 125s update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode 125s Setting up libfile-stripnondeterminism-perl (1.14.2-1) ... 125s Setting up cpp-15-aarch64-linux-gnu (15.2.0-5ubuntu1) ... 125s Setting up gettext (0.23.1-2build2) ... 125s Setting up libgcc-15-dev:arm64 (15.2.0-5ubuntu1) ... 125s Setting up intltool-debian (0.35.0+20060710.6) ... 125s Setting up cpp-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 125s Setting up libmbedx509-7:arm64 (3.6.2-3ubuntu1) ... 125s Setting up libstdc++-15-dev:arm64 (15.2.0-5ubuntu1) ... 125s Setting up libmbedtls21:arm64 (3.6.2-3ubuntu1) ... 125s Setting up dh-strip-nondeterminism (1.14.2-1) ... 125s Setting up cpp-15 (15.2.0-5ubuntu1) ... 125s Setting up cpp (4:15.2.0-4ubuntu1) ... 125s Setting up cmake (3.31.6-2ubuntu6) ... 125s Setting up gcc-15-aarch64-linux-gnu (15.2.0-5ubuntu1) ... 125s Setting up po-debconf (1.0.21+nmu1) ... 125s Setting up libncbi-vdb3:arm64 (3.2.1+dfsg-2) ... 125s Setting up ncbi-blast+ (2.16.0+ds-7) ... 125s Setting up gcc-15 (15.2.0-5ubuntu1) ... 125s Setting up g++-15-aarch64-linux-gnu (15.2.0-5ubuntu1) ... 125s Setting up g++-15 (15.2.0-5ubuntu1) ... 125s Setting up gcc-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 125s Setting up libtool (2.5.4-4build1) ... 125s Setting up gcc (4:15.2.0-4ubuntu1) ... 125s Setting up dh-autoreconf (21) ... 125s Setting up g++-aarch64-linux-gnu (4:15.2.0-4ubuntu1) ... 125s Setting up debhelper (13.24.2ubuntu1) ... 125s Setting up g++ (4:15.2.0-4ubuntu1) ... 125s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 125s Setting up build-essential (12.12ubuntu1) ... 125s Processing triggers for libc-bin (2.42-0ubuntu3) ... 125s Processing triggers for man-db (2.13.1-1) ... 126s Processing triggers for install-info (7.1.1-1ubuntu1) ... 128s autopkgtest [17:42:50]: test run-tests: [----------------------- 129s + mkdir test_build 129s + ls debian/*.md5sums.gz 129s + gzip --keep debian/db_nucl_fm.md5sums 129s + gzip --keep debian/db_nucl_sa.md5sums 129s + gzip --keep debian/db_prot_fm.md5sums 129s + gzip --keep debian/db_prot_sa.md5sums 129s + gzip --keep debian/db_trans_fm.md5sums 129s + gzip --keep debian/db_trans_sa.md5sums 129s + cp --backup debian/db_nucl_fm.md5sums.gz debian/db_nucl_sa.md5sums.gz debian/db_prot_fm.md5sums.gz debian/db_prot_sa.md5sums.gz debian/db_trans_fm.md5sums.gz debian/db_trans_sa.md5sums.gz tests/ 129s + cd test_build 129s + cmake -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON ../ 129s CMake Deprecation Warning at CMakeLists.txt:5 (cmake_minimum_required): 129s Compatibility with CMake < 3.10 will be removed from a future version of 129s CMake. 129s 129s Update the VERSION argument value. Or, use the ... syntax 129s to tell CMake that the project requires at least but has been updated 129s to work with policies introduced by or earlier. 129s 129s 129s Compiler Detection 129s -- The CXX compiler identification is GNU 15.2.0 129s -- Detecting CXX compiler ABI info 129s -- Detecting CXX compiler ABI info - done 129s -- Check for working CXX compiler: /usr/bin/c++ - skipped 129s -- Detecting CXX compile features 129s -- Detecting CXX compile features - done 129s 129s Dependency detection 130s CMake Warning (dev) at /usr/share/cmake/seqan/seqan-config.cmake:218 (EXEC_PROGRAM): 130s Policy CMP0153 is not set: The exec_program command should not be called. 130s Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy 130s command to set the policy and suppress this warning. 130s 130s Use execute_process() instead. 130s Call Stack (most recent call first): 130s src/CMakeLists.txt:34 (find_package) 130s This warning is for project developers. Use -Wno-dev to suppress it. 130s 131s -- These dependencies were found: 131s -- The requirements were met. 131s -- LAMBDA version is: 2.0.1 131s -- The following options are selected for the build: 131s -- Run 'cmake -LH' to get a comment on each option. 131s -- Remove CMakeCache.txt and re-run cmake with -DOPTIONNAME=ON|OFF to change an option. 131s OPENMP TRUE -fopenmp 131s ZLIB TRUE 1.3.1 131s BZIP2 TRUE 1.0.8 131s SEQAN TRUE 2.4.0 131s 131s Build configuration 131s LAMBDA_FASTBUILD OFF 131s LAMBDA_LINGAPS_OPT OFF 131s LAMBDA_LONG_PROTEIN_SUBJ_SEQS OFF 131s LAMBDA_MMAPPED_DB OFF 131s LAMBDA_NATIVE_BUILD ON 131s LAMBDA_MULTIOPT_BUILD OFF 131s LAMBDA_STATIC_BUILD OFF 131s 131s Setting up unit tests 131s CMake Deprecation Warning at tests/CMakeLists.txt:5 (cmake_minimum_required): 131s Compatibility with CMake < 3.10 will be removed from a future version of 131s CMake. 131s 131s Update the VERSION argument value. Or, use the ... syntax 131s to tell CMake that the project requires at least but has been updated 131s to work with policies introduced by or earlier. 131s 131s 131s -- Configuring done (2.0s) 131s -- Generating done (0.0s) 131s -- Build files have been written to: /tmp/autopkgtest.9WFAjk/build.Dtc/src/test_build 131s CMake Warning: 131s Manually-specified variables were not used by the project: 131s 131s CMAKE_EXPORT_NO_PACKAGE_REGISTRY 131s 131s 131s + dpkg -L lambda-align2 131s + grep bin/ 131s + ln -s /usr/bin/lambda2 bin/ 131s + mkdir -p libexec 131s + dpkg -L lambda-align2 131s + grep libexec/ 131s + cd tests 131s + set +e 131s + nproc 131s + ctest --parallel 2 -I 1,10 --output-on-failure 131s Test project /tmp/autopkgtest.9WFAjk/build.Dtc/src/test_build/tests 131s Start 1: test_mkindex_blastn_sa 131s Start 2: test_mkindex_blastn_fm 132s 1/10 Test #2: test_mkindex_blastn_fm ........... Passed 1.58 sec 132s Start 3: test_mkindex_blastp_sa 132s 2/10 Test #1: test_mkindex_blastn_sa ........... Passed 1.62 sec 132s Start 4: test_mkindex_blastp_fm 133s 3/10 Test #3: test_mkindex_blastp_sa ........... Passed 0.14 sec 133s Start 5: test_mkindex_blastx_sa 133s 4/10 Test #4: test_mkindex_blastp_fm ........... Passed 0.14 sec 133s Start 6: test_mkindex_blastx_fm 133s 5/10 Test #5: test_mkindex_blastx_sa ........... Passed 0.14 sec 133s Start 7: test_mkindex_tblastn_sa 133s 6/10 Test #6: test_mkindex_blastx_fm ........... Passed 0.14 sec 133s Start 8: test_mkindex_tblastn_fm 133s 7/10 Test #7: test_mkindex_tblastn_sa .......... Passed 0.70 sec 133s Start 9: test_mkindex_tblastx_sa 133s 8/10 Test #8: test_mkindex_tblastn_fm .......... Passed 0.71 sec 133s Start 10: test_mkindex_tblastx_fm 134s 9/10 Test #9: test_mkindex_tblastx_sa .......... Passed 0.69 sec 134s 10/10 Test #10: test_mkindex_tblastx_fm .......... Passed 0.70 sec 134s 134s 100% tests passed, 0 tests failed out of 10 134s 134s Total Test time (real) = 3.33 sec 134s + RESULT=0 134s + ls tests/*~ 134s + exit 0 135s autopkgtest [17:42:56]: test run-tests: -----------------------] 135s autopkgtest [17:42:57]: test run-tests: - - - - - - - - - - results - - - - - - - - - - 135s run-tests PASS 136s autopkgtest [17:42:58]: @@@@@@@@@@@@@@@@@@@@ summary 136s run-tests PASS 453s nova [W] Timed out waiting for c59f40f1-fbbe-446d-9836-d57d90db50b3 to get deleted.