0s autopkgtest [18:35:26]: starting date and time: 2025-10-18 18:35:26+0000 0s autopkgtest [18:35:26]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [18:35:26]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.ghhf1jid/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults --apt-upgrade kmer --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=python3-defaults/3.13.7-2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-arm64-17.secgroup --name adt-resolute-arm64-kmer-20251018-183526-juju-7f2275-prod-proposed-migration-environment-15-9954d094-5eb5-48cd-9f15-bebe1a303001 --image adt/ubuntu-resolute-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 3s Creating nova instance adt-resolute-arm64-kmer-20251018-183526-juju-7f2275-prod-proposed-migration-environment-15-9954d094-5eb5-48cd-9f15-bebe1a303001 from image adt/ubuntu-resolute-arm64-server-20251018.img (UUID f7a49384-4e4d-4350-9a26-1f59236f89dd)... 57s autopkgtest [18:36:23]: testbed dpkg architecture: arm64 57s autopkgtest [18:36:23]: testbed apt version: 3.1.6ubuntu2 58s autopkgtest [18:36:24]: @@@@@@@@@@@@@@@@@@@@ test bed setup 58s autopkgtest [18:36:24]: testbed release detected to be: None 59s autopkgtest [18:36:25]: updating testbed package index (apt update) 59s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [83.3 kB] 59s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 59s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 59s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 59s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [16.7 kB] 59s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [5028 B] 59s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [456 kB] 60s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [50.7 kB] 60s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 Packages [99.7 kB] 60s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 Packages [43.8 kB] 60s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 Packages [322 kB] 60s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 Packages [6524 B] 60s Fetched 1083 kB in 1s (1010 kB/s) 61s Reading package lists... 61s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 61s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 61s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 62s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 62s Reading package lists... 62s Reading package lists... 63s Building dependency tree... 63s Reading state information... 63s Calculating upgrade... 63s The following packages will be upgraded: 63s apt flash-kernel gir1.2-girepository-2.0 libapt-pkg7.0 libgirepository-1.0-1 63s libpython3-stdlib lto-disabled-list python3 python3-minimal 64s 9 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 64s Need to get 2671 kB of archives. 64s After this operation, 66.6 kB of additional disk space will be used. 64s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 python3-minimal arm64 3.13.7-2 [27.8 kB] 64s Get:2 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 python3 arm64 3.13.7-2 [23.9 kB] 64s Get:3 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 libpython3-stdlib arm64 3.13.7-2 [10.6 kB] 64s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 libapt-pkg7.0 arm64 3.1.8ubuntu1 [1055 kB] 64s Get:5 http://ftpmaster.internal/ubuntu resolute/main arm64 apt arm64 3.1.8ubuntu1 [1373 kB] 64s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 libgirepository-1.0-1 arm64 1.86.0-6 [84.5 kB] 64s Get:7 http://ftpmaster.internal/ubuntu resolute/main arm64 gir1.2-girepository-2.0 arm64 1.86.0-6 [25.3 kB] 64s Get:8 http://ftpmaster.internal/ubuntu resolute/main arm64 flash-kernel arm64 3.109ubuntu7 [58.8 kB] 64s Get:9 http://ftpmaster.internal/ubuntu resolute/main arm64 lto-disabled-list all 71 [12.5 kB] 65s dpkg-preconfigure: unable to re-open stdin: No such file or directory 65s Fetched 2671 kB in 1s (3032 kB/s) 65s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83359 files and directories currently installed.) 65s Preparing to unpack .../python3-minimal_3.13.7-2_arm64.deb ... 65s Unpacking python3-minimal (3.13.7-2) over (3.13.7-1) ... 65s Setting up python3-minimal (3.13.7-2) ... 65s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83359 files and directories currently installed.) 65s Preparing to unpack .../0-python3_3.13.7-2_arm64.deb ... 65s running python pre-rtupdate hooks for python3.13... 65s Unpacking python3 (3.13.7-2) over (3.13.7-1) ... 66s Preparing to unpack .../1-libpython3-stdlib_3.13.7-2_arm64.deb ... 66s Unpacking libpython3-stdlib:arm64 (3.13.7-2) over (3.13.7-1) ... 66s Preparing to unpack .../2-libapt-pkg7.0_3.1.8ubuntu1_arm64.deb ... 66s Unpacking libapt-pkg7.0:arm64 (3.1.8ubuntu1) over (3.1.6ubuntu2) ... 66s Preparing to unpack .../3-apt_3.1.8ubuntu1_arm64.deb ... 66s Unpacking apt (3.1.8ubuntu1) over (3.1.6ubuntu2) ... 66s Preparing to unpack .../4-libgirepository-1.0-1_1.86.0-6_arm64.deb ... 66s Unpacking libgirepository-1.0-1:arm64 (1.86.0-6) over (1.84.0-1) ... 66s Preparing to unpack .../5-gir1.2-girepository-2.0_1.86.0-6_arm64.deb ... 66s Unpacking gir1.2-girepository-2.0:arm64 (1.86.0-6) over (1.84.0-1) ... 66s Preparing to unpack .../6-flash-kernel_3.109ubuntu7_arm64.deb ... 66s Unpacking flash-kernel (3.109ubuntu7) over (3.109ubuntu6) ... 66s Preparing to unpack .../7-lto-disabled-list_71_all.deb ... 66s Unpacking lto-disabled-list (71) over (69) ... 66s Setting up lto-disabled-list (71) ... 66s Setting up libgirepository-1.0-1:arm64 (1.86.0-6) ... 66s Setting up libapt-pkg7.0:arm64 (3.1.8ubuntu1) ... 66s Setting up libpython3-stdlib:arm64 (3.13.7-2) ... 66s Setting up apt (3.1.8ubuntu1) ... 67s Setting up python3 (3.13.7-2) ... 67s running python rtupdate hooks for python3.13... 67s running python post-rtupdate hooks for python3.13... 67s Setting up gir1.2-girepository-2.0:arm64 (1.86.0-6) ... 67s Setting up flash-kernel (3.109ubuntu7) ... 68s flash-kernel: deferring update (trigger activated) 68s Processing triggers for libc-bin (2.42-0ubuntu3) ... 68s Processing triggers for man-db (2.13.1-1) ... 70s Processing triggers for initramfs-tools (0.150ubuntu3) ... 70s update-initramfs: Generating /boot/initrd.img-6.17.0-5-generic 87s System running in EFI mode, skipping. 87s Processing triggers for flash-kernel (3.109ubuntu7) ... 87s System running in EFI mode, skipping. 88s autopkgtest [18:36:54]: upgrading testbed (apt dist-upgrade and autopurge) 88s Reading package lists... 89s Building dependency tree... 89s Reading state information... 89s Calculating upgrade... 89s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 90s Reading package lists... 90s Building dependency tree... 90s Reading state information... 90s Solving dependencies... 90s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 91s autopkgtest [18:36:57]: rebooting testbed after setup commands that affected boot 118s autopkgtest [18:37:24]: testbed running kernel: Linux 6.17.0-5-generic #5-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 22 09:50:31 UTC 2025 120s autopkgtest [18:37:26]: @@@@@@@@@@@@@@@@@@@@ apt-source kmer 127s Get:1 http://ftpmaster.internal/ubuntu resolute/universe kmer 0~20150903+r2013-9build1 (dsc) [2395 B] 127s Get:2 http://ftpmaster.internal/ubuntu resolute/universe kmer 0~20150903+r2013-9build1 (tar) [1252 kB] 127s Get:3 http://ftpmaster.internal/ubuntu resolute/universe kmer 0~20150903+r2013-9build1 (diff) [2380 kB] 127s gpgv: Signature made Fri Jan 3 10:57:38 2025 UTC 127s gpgv: using RSA key 568BF22A66337CBFC9A6B9B72C83DBC8E9BD0E37 127s gpgv: Can't check signature: No public key 127s dpkg-source: warning: cannot verify inline signature for ./kmer_0~20150903+r2013-9build1.dsc: no acceptable signature found 127s autopkgtest [18:37:33]: testing package kmer version 0~20150903+r2013-9build1 129s autopkgtest [18:37:35]: build not needed 131s autopkgtest [18:37:37]: test sim4db-unit-test: preparing testbed 131s Reading package lists... 131s Building dependency tree... 131s Reading state information... 131s Solving dependencies... 132s The following NEW packages will be installed: 132s adwaita-icon-theme aglfn at-spi2-common atac dconf-gsettings-backend 132s dconf-service fontconfig fontconfig-config fonts-dejavu-core 132s fonts-dejavu-mono gnuplot gnuplot-data gnuplot-qt gtk-update-icon-cache 132s hicolor-icon-theme kmer kmer-examples leaff libaom3 libatk-bridge2.0-0t64 132s libatk1.0-0t64 libatspi2.0-0t64 libavahi-client3 libavahi-common-data 132s libavahi-common3 libcairo-gobject2 libcairo2 libcolord2 libcups2t64 132s libdatrie1 libdconf1 libde265-0 libdeflate0 libdouble-conversion3 132s libdrm-amdgpu1 libegl-mesa0 libegl1 libepoxy0 libfile-which-perl 132s libfontconfig1 libgbm1 libgd3 libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common 132s libgl1 libgl1-mesa-dri libglvnd0 libglx-mesa0 libglx0 libgomp1 132s libgraphite2-3 libgtk-3-0t64 libgtk-3-common libgudev-1.0-0 libharfbuzz0b 132s libheif-plugin-aomdec libheif-plugin-libde265 libheif1 libice6 libicu76 132s libimagequant0 libinput-bin libinput10 libjbig0 libjpeg-turbo8 libjpeg8 132s libkmer-dev liblcms2-2 liblerc4 liblua5.4-0 libmd4c0 libmeryl-dev 132s libmtdev1t64 libnotify4 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 132s libpcre2-16-0 libpcre2-32-0 libpixman-1-0 libqt5core5t64 libqt5dbus5t64 132s libqt5gui5t64 libqt5network5t64 libqt5printsupport5t64 libqt5svg5 132s libqt5widgets5t64 libsharpyuv0 libsm6 libthai-data libthai0 libtiff6 132s libvulkan1 libwacom-common libwacom9 libwayland-client0 libwayland-cursor0 132s libwayland-egl1 libwebp7 libwebpmux3 libwxbase3.2-1t64 libwxgtk3.2-1t64 132s libx11-xcb1 libxcb-dri3-0 libxcb-glx0 libxcb-icccm4 libxcb-image0 132s libxcb-keysyms1 libxcb-present0 libxcb-randr0 libxcb-render-util0 132s libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-util1 132s libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxcomposite1 132s libxcursor1 libxdamage1 libxfixes3 libxi6 libxinerama1 libxkbcommon-x11-0 132s libxpm4 libxrandr2 libxrender1 libxshmfence1 libxtst6 libxxf86vm1 meryl 132s mesa-libgallium sim4db x11-common 132s 0 upgraded, 137 newly installed, 0 to remove and 0 not upgraded. 132s Need to get 59.6 MB of archives. 132s After this operation, 227 MB of additional disk space will be used. 132s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 libgdk-pixbuf2.0-common all 2.42.12+dfsg-5 [8326 B] 132s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg-turbo8 arm64 2.1.5-4ubuntu2 [165 kB] 132s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 132s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 libdeflate0 arm64 1.23-2 [46.4 kB] 132s Get:5 http://ftpmaster.internal/ubuntu resolute/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB] 132s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB] 132s Get:7 http://ftpmaster.internal/ubuntu resolute/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB] 132s Get:8 http://ftpmaster.internal/ubuntu resolute/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB] 132s Get:9 http://ftpmaster.internal/ubuntu resolute/main arm64 libtiff6 arm64 4.7.0-3ubuntu3 [196 kB] 132s Get:10 http://ftpmaster.internal/ubuntu resolute/main arm64 libgdk-pixbuf-2.0-0 arm64 2.42.12+dfsg-5 [156 kB] 133s Get:11 http://ftpmaster.internal/ubuntu resolute/main arm64 gtk-update-icon-cache arm64 4.20.1+ds-2 [54.4 kB] 133s Get:12 http://ftpmaster.internal/ubuntu resolute/main arm64 hicolor-icon-theme all 0.18-2 [13.3 kB] 133s Get:13 http://ftpmaster.internal/ubuntu resolute/main arm64 adwaita-icon-theme all 49.0-1 [581 kB] 133s Get:14 http://ftpmaster.internal/ubuntu resolute/main arm64 at-spi2-common all 2.57.1-1 [9432 B] 133s Get:15 http://ftpmaster.internal/ubuntu resolute/main arm64 libfile-which-perl all 1.27-2 [12.5 kB] 133s Get:16 http://ftpmaster.internal/ubuntu resolute/universe arm64 leaff arm64 0~20150903+r2013-9build1 [67.1 kB] 133s Get:17 http://ftpmaster.internal/ubuntu resolute/universe arm64 meryl arm64 0~20150903+r2013-9build1 [214 kB] 133s Get:18 http://ftpmaster.internal/ubuntu resolute/universe arm64 aglfn all 1.7+git20191031.4036a9c-2 [30.6 kB] 133s Get:19 http://ftpmaster.internal/ubuntu resolute/universe arm64 gnuplot-data all 6.0.2+dfsg1-2ubuntu1 [76.0 kB] 133s Get:20 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 133s Get:21 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 133s Get:22 http://ftpmaster.internal/ubuntu resolute/main arm64 fontconfig-config arm64 2.15.0-2.3ubuntu1 [38.1 kB] 133s Get:23 http://ftpmaster.internal/ubuntu resolute/main arm64 libfontconfig1 arm64 2.15.0-2.3ubuntu1 [144 kB] 133s Get:24 http://ftpmaster.internal/ubuntu resolute/main arm64 libpixman-1-0 arm64 0.44.0-3 [197 kB] 133s Get:25 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-render0 arm64 1.17.0-2build1 [18.1 kB] 133s Get:26 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-shm0 arm64 1.17.0-2build1 [6234 B] 133s Get:27 http://ftpmaster.internal/ubuntu resolute/main arm64 libxrender1 arm64 1:0.9.12-1 [19.5 kB] 133s Get:28 http://ftpmaster.internal/ubuntu resolute/main arm64 libcairo2 arm64 1.18.4-1build1 [592 kB] 133s Get:29 http://ftpmaster.internal/ubuntu resolute/main arm64 libaom3 arm64 3.12.1-1 [1824 kB] 134s Get:30 http://ftpmaster.internal/ubuntu resolute/main arm64 libheif-plugin-aomdec arm64 1.20.2-1 [12.3 kB] 134s Get:31 http://ftpmaster.internal/ubuntu resolute/main arm64 libde265-0 arm64 1.0.16-1 [146 kB] 134s Get:32 http://ftpmaster.internal/ubuntu resolute/main arm64 libheif-plugin-libde265 arm64 1.20.2-1 [9792 B] 134s Get:33 http://ftpmaster.internal/ubuntu resolute/main arm64 libheif1 arm64 1.20.2-1 [480 kB] 134s Get:34 http://ftpmaster.internal/ubuntu resolute/main arm64 libgomp1 arm64 15.2.0-5ubuntu1 [148 kB] 134s Get:35 http://ftpmaster.internal/ubuntu resolute/main arm64 libimagequant0 arm64 2.18.0-1build1 [37.1 kB] 134s Get:36 http://ftpmaster.internal/ubuntu resolute/main arm64 libxpm4 arm64 1:3.5.17-1build2 [35.1 kB] 134s Get:37 http://ftpmaster.internal/ubuntu resolute/main arm64 libgd3 arm64 2.3.3-13ubuntu1 [124 kB] 134s Get:38 http://ftpmaster.internal/ubuntu resolute/main arm64 liblua5.4-0 arm64 5.4.8-1 [171 kB] 134s Get:39 http://ftpmaster.internal/ubuntu resolute/main arm64 fontconfig arm64 2.15.0-2.3ubuntu1 [191 kB] 134s Get:40 http://ftpmaster.internal/ubuntu resolute/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB] 134s Get:41 http://ftpmaster.internal/ubuntu resolute/main arm64 libharfbuzz0b arm64 10.2.0-1 [490 kB] 134s Get:42 http://ftpmaster.internal/ubuntu resolute/main arm64 libthai-data all 0.1.29-2build1 [158 kB] 134s Get:43 http://ftpmaster.internal/ubuntu resolute/main arm64 libdatrie1 arm64 0.2.13-4 [19.1 kB] 134s Get:44 http://ftpmaster.internal/ubuntu resolute/main arm64 libthai0 arm64 0.1.29-2build1 [18.2 kB] 134s Get:45 http://ftpmaster.internal/ubuntu resolute/main arm64 libpango-1.0-0 arm64 1.56.3-1build1 [247 kB] 134s Get:46 http://ftpmaster.internal/ubuntu resolute/main arm64 libpangoft2-1.0-0 arm64 1.56.3-1build1 [53.5 kB] 134s Get:47 http://ftpmaster.internal/ubuntu resolute/main arm64 libpangocairo-1.0-0 arm64 1.56.3-1build1 [29.6 kB] 134s Get:48 http://ftpmaster.internal/ubuntu resolute/universe arm64 libdouble-conversion3 arm64 3.3.1-1build1 [40.6 kB] 134s Get:49 http://ftpmaster.internal/ubuntu resolute/main arm64 libicu76 arm64 76.1-4ubuntu2 [11.2 MB] 135s Get:50 http://ftpmaster.internal/ubuntu resolute/main arm64 libpcre2-16-0 arm64 10.46-1 [225 kB] 135s Get:51 http://ftpmaster.internal/ubuntu resolute/universe arm64 libqt5core5t64 arm64 5.15.17+dfsg-1ubuntu1 [2001 kB] 135s Get:52 http://ftpmaster.internal/ubuntu resolute/main arm64 libglvnd0 arm64 1.7.0-1build2 [59.2 kB] 135s Get:53 http://ftpmaster.internal/ubuntu resolute/main arm64 libdrm-amdgpu1 arm64 2.4.125-1 [21.6 kB] 135s Get:54 http://ftpmaster.internal/ubuntu resolute/main arm64 libx11-xcb1 arm64 2:1.8.12-1build1 [8216 B] 135s Get:55 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-dri3-0 arm64 1.17.0-2build1 [8120 B] 135s Get:56 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-present0 arm64 1.17.0-2build1 [6560 B] 135s Get:57 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-randr0 arm64 1.17.0-2build1 [20.2 kB] 135s Get:58 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-sync1 arm64 1.17.0-2build1 [10.4 kB] 135s Get:59 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-xfixes0 arm64 1.17.0-2build1 [11.4 kB] 135s Get:60 http://ftpmaster.internal/ubuntu resolute/main arm64 libxshmfence1 arm64 1.3.3-1 [5378 B] 135s Get:61 http://ftpmaster.internal/ubuntu resolute/main arm64 mesa-libgallium arm64 25.2.3-1ubuntu1 [12.1 MB] 136s Get:62 http://ftpmaster.internal/ubuntu resolute/main arm64 libgbm1 arm64 25.2.3-1ubuntu1 [34.4 kB] 136s Get:63 http://ftpmaster.internal/ubuntu resolute/main arm64 libwayland-client0 arm64 1.24.0-1build1 [28.9 kB] 136s Get:64 http://ftpmaster.internal/ubuntu resolute/main arm64 libegl-mesa0 arm64 25.2.3-1ubuntu1 [115 kB] 136s Get:65 http://ftpmaster.internal/ubuntu resolute/main arm64 libegl1 arm64 1.7.0-1build2 [31.9 kB] 136s Get:66 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-glx0 arm64 1.17.0-2build1 [27.8 kB] 136s Get:67 http://ftpmaster.internal/ubuntu resolute/main arm64 libxxf86vm1 arm64 1:1.1.4-1build4 [9130 B] 136s Get:68 http://ftpmaster.internal/ubuntu resolute/main arm64 libvulkan1 arm64 1.4.321.0-1 [169 kB] 136s Get:69 http://ftpmaster.internal/ubuntu resolute/main arm64 libgl1-mesa-dri arm64 25.2.3-1ubuntu1 [34.9 kB] 136s Get:70 http://ftpmaster.internal/ubuntu resolute/main arm64 libglx-mesa0 arm64 25.2.3-1ubuntu1 [110 kB] 136s Get:71 http://ftpmaster.internal/ubuntu resolute/main arm64 libglx0 arm64 1.7.0-1build2 [34.5 kB] 136s Get:72 http://ftpmaster.internal/ubuntu resolute/main arm64 libgl1 arm64 1.7.0-1build2 [104 kB] 136s Get:73 http://ftpmaster.internal/ubuntu resolute/main arm64 x11-common all 1:7.7+24ubuntu1 [22.4 kB] 136s Get:74 http://ftpmaster.internal/ubuntu resolute/main arm64 libice6 arm64 2:1.1.1-1 [42.3 kB] 136s Get:75 http://ftpmaster.internal/ubuntu resolute/main arm64 libmtdev1t64 arm64 1.1.7-1 [14.6 kB] 136s Get:76 http://ftpmaster.internal/ubuntu resolute/main arm64 libgudev-1.0-0 arm64 1:238-7 [16.5 kB] 136s Get:77 http://ftpmaster.internal/ubuntu resolute/main arm64 libwacom-common all 2.16.1-1 [113 kB] 136s Get:78 http://ftpmaster.internal/ubuntu resolute/main arm64 libwacom9 arm64 2.16.1-1 [28.2 kB] 136s Get:79 http://ftpmaster.internal/ubuntu resolute/main arm64 libinput-bin arm64 1.28.1-1build1 [24.3 kB] 136s Get:80 http://ftpmaster.internal/ubuntu resolute/main arm64 libinput10 arm64 1.28.1-1build1 [147 kB] 136s Get:81 http://ftpmaster.internal/ubuntu resolute/universe arm64 libmd4c0 arm64 0.5.2-2 [42.4 kB] 136s Get:82 http://ftpmaster.internal/ubuntu resolute/universe arm64 libqt5dbus5t64 arm64 5.15.17+dfsg-1ubuntu1 [221 kB] 136s Get:83 http://ftpmaster.internal/ubuntu resolute/universe arm64 libqt5network5t64 arm64 5.15.17+dfsg-1ubuntu1 [735 kB] 136s Get:84 http://ftpmaster.internal/ubuntu resolute/main arm64 libsm6 arm64 2:1.2.6-1 [16.6 kB] 136s Get:85 http://ftpmaster.internal/ubuntu resolute/universe arm64 libxcb-icccm4 arm64 0.4.2-1 [10.9 kB] 136s Get:86 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-util1 arm64 0.4.1-1 [10.9 kB] 136s Get:87 http://ftpmaster.internal/ubuntu resolute/universe arm64 libxcb-image0 arm64 0.4.0-2build1 [10.8 kB] 136s Get:88 http://ftpmaster.internal/ubuntu resolute/universe arm64 libxcb-keysyms1 arm64 0.4.1-1 [8802 B] 136s Get:89 http://ftpmaster.internal/ubuntu resolute/universe arm64 libxcb-render-util0 arm64 0.3.10-1 [10.5 kB] 136s Get:90 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-shape0 arm64 1.17.0-2build1 [6732 B] 136s Get:91 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-xinerama0 arm64 1.17.0-2build1 [5920 B] 136s Get:92 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-xinput0 arm64 1.17.0-2build1 [37.8 kB] 136s Get:93 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-xkb1 arm64 1.17.0-2build1 [35.3 kB] 136s Get:94 http://ftpmaster.internal/ubuntu resolute/main arm64 libxkbcommon-x11-0 arm64 1.7.0-2.1 [14.0 kB] 136s Get:95 http://ftpmaster.internal/ubuntu resolute/universe arm64 libqt5gui5t64 arm64 5.15.17+dfsg-1ubuntu1 [3684 kB] 136s Get:96 http://ftpmaster.internal/ubuntu resolute/main arm64 libavahi-common-data arm64 0.8-16ubuntu3 [31.1 kB] 136s Get:97 http://ftpmaster.internal/ubuntu resolute/main arm64 libavahi-common3 arm64 0.8-16ubuntu3 [24.5 kB] 136s Get:98 http://ftpmaster.internal/ubuntu resolute/main arm64 libavahi-client3 arm64 0.8-16ubuntu3 [28.4 kB] 136s Get:99 http://ftpmaster.internal/ubuntu resolute/main arm64 libcups2t64 arm64 2.4.12-0ubuntu3 [269 kB] 136s Get:100 http://ftpmaster.internal/ubuntu resolute/universe arm64 libqt5widgets5t64 arm64 5.15.17+dfsg-1ubuntu1 [2560 kB] 136s Get:101 http://ftpmaster.internal/ubuntu resolute/universe arm64 libqt5printsupport5t64 arm64 5.15.17+dfsg-1ubuntu1 [208 kB] 136s Get:102 http://ftpmaster.internal/ubuntu resolute/universe arm64 libqt5svg5 arm64 5.15.17-1 [146 kB] 137s Get:103 http://ftpmaster.internal/ubuntu resolute/main arm64 libwebpmux3 arm64 1.5.0-0.1 [25.4 kB] 137s Get:104 http://ftpmaster.internal/ubuntu resolute/main arm64 libpcre2-32-0 arm64 10.46-1 [213 kB] 137s Get:105 http://ftpmaster.internal/ubuntu resolute/universe arm64 libwxbase3.2-1t64 arm64 3.2.8+dfsg-2 [866 kB] 137s Get:106 http://ftpmaster.internal/ubuntu resolute/main arm64 libcairo-gobject2 arm64 1.18.4-1build1 [128 kB] 137s Get:107 http://ftpmaster.internal/ubuntu resolute/main arm64 libatk1.0-0t64 arm64 2.57.1-1 [55.5 kB] 137s Get:108 http://ftpmaster.internal/ubuntu resolute/main arm64 libxi6 arm64 2:1.8.2-1 [32.4 kB] 137s Get:109 http://ftpmaster.internal/ubuntu resolute/main arm64 libatspi2.0-0t64 arm64 2.57.1-1 [84.7 kB] 137s Get:110 http://ftpmaster.internal/ubuntu resolute/main arm64 libatk-bridge2.0-0t64 arm64 2.57.1-1 [66.0 kB] 137s Get:111 http://ftpmaster.internal/ubuntu resolute/main arm64 liblcms2-2 arm64 2.16-2 [170 kB] 137s Get:112 http://ftpmaster.internal/ubuntu resolute/main arm64 libcolord2 arm64 1.4.7-3build1 [148 kB] 137s Get:113 http://ftpmaster.internal/ubuntu resolute/main arm64 libepoxy0 arm64 1.5.10-2 [236 kB] 137s Get:114 http://ftpmaster.internal/ubuntu resolute/main arm64 libwayland-cursor0 arm64 1.24.0-1build1 [11.1 kB] 137s Get:115 http://ftpmaster.internal/ubuntu resolute/main arm64 libwayland-egl1 arm64 1.24.0-1build1 [6500 B] 137s Get:116 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcomposite1 arm64 1:0.4.6-1 [6626 B] 137s Get:117 http://ftpmaster.internal/ubuntu resolute/main arm64 libxfixes3 arm64 1:6.0.0-2build1 [11.2 kB] 137s Get:118 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcursor1 arm64 1:1.2.3-1 [22.2 kB] 137s Get:119 http://ftpmaster.internal/ubuntu resolute/main arm64 libxdamage1 arm64 1:1.1.6-1build1 [6236 B] 137s Get:120 http://ftpmaster.internal/ubuntu resolute/main arm64 libxinerama1 arm64 2:1.1.4-3build1 [6394 B] 137s Get:121 http://ftpmaster.internal/ubuntu resolute/main arm64 libxrandr2 arm64 2:1.5.4-1 [19.6 kB] 137s Get:122 http://ftpmaster.internal/ubuntu resolute/main arm64 libdconf1 arm64 0.40.0-5willsync1 [42.3 kB] 138s Get:123 http://ftpmaster.internal/ubuntu resolute/main arm64 dconf-service arm64 0.40.0-5willsync1 [28.8 kB] 138s Get:124 http://ftpmaster.internal/ubuntu resolute/main arm64 dconf-gsettings-backend arm64 0.40.0-5willsync1 [23.8 kB] 138s Get:125 http://ftpmaster.internal/ubuntu resolute/main arm64 libgtk-3-common all 3.24.50-1ubuntu2 [1425 kB] 138s Get:126 http://ftpmaster.internal/ubuntu resolute/main arm64 libgtk-3-0t64 arm64 3.24.50-1ubuntu2 [3229 kB] 139s Get:127 http://ftpmaster.internal/ubuntu resolute/main arm64 libnotify4 arm64 0.8.6-2 [28.2 kB] 139s Get:128 http://ftpmaster.internal/ubuntu resolute/main arm64 libxtst6 arm64 2:1.2.5-1 [13.2 kB] 139s Get:129 http://ftpmaster.internal/ubuntu resolute/universe arm64 libwxgtk3.2-1t64 arm64 3.2.8+dfsg-2 [4429 kB] 139s Get:130 http://ftpmaster.internal/ubuntu resolute/universe arm64 gnuplot-qt arm64 6.0.2+dfsg1-2ubuntu1 [1216 kB] 139s Get:131 http://ftpmaster.internal/ubuntu resolute/universe arm64 gnuplot all 6.0.2+dfsg1-2ubuntu1 [3574 B] 139s Get:132 http://ftpmaster.internal/ubuntu resolute/universe arm64 atac arm64 0~20150903+r2013-9build1 [370 kB] 139s Get:133 http://ftpmaster.internal/ubuntu resolute/universe arm64 sim4db arm64 0~20150903+r2013-9build1 [533 kB] 139s Get:134 http://ftpmaster.internal/ubuntu resolute/universe arm64 kmer all 0~20150903+r2013-9build1 [3832 B] 139s Get:135 http://ftpmaster.internal/ubuntu resolute/universe arm64 kmer-examples all 0~20150903+r2013-9build1 [2351 kB] 139s Get:136 http://ftpmaster.internal/ubuntu resolute/universe arm64 libmeryl-dev arm64 0~20150903+r2013-9build1 [61.5 kB] 139s Get:137 http://ftpmaster.internal/ubuntu resolute/universe arm64 libkmer-dev arm64 0~20150903+r2013-9build1 [225 kB] 140s Fetched 59.6 MB in 8s (7830 kB/s) 140s Selecting previously unselected package libgdk-pixbuf2.0-common. 140s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83359 files and directories currently installed.) 140s Preparing to unpack .../000-libgdk-pixbuf2.0-common_2.42.12+dfsg-5_all.deb ... 140s Unpacking libgdk-pixbuf2.0-common (2.42.12+dfsg-5) ... 140s Selecting previously unselected package libjpeg-turbo8:arm64. 140s Preparing to unpack .../001-libjpeg-turbo8_2.1.5-4ubuntu2_arm64.deb ... 140s Unpacking libjpeg-turbo8:arm64 (2.1.5-4ubuntu2) ... 140s Selecting previously unselected package libjpeg8:arm64. 140s Preparing to unpack .../002-libjpeg8_8c-2ubuntu11_arm64.deb ... 140s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 140s Selecting previously unselected package libdeflate0:arm64. 140s Preparing to unpack .../003-libdeflate0_1.23-2_arm64.deb ... 140s Unpacking libdeflate0:arm64 (1.23-2) ... 140s Selecting previously unselected package libjbig0:arm64. 140s Preparing to unpack .../004-libjbig0_2.1-6.1ubuntu2_arm64.deb ... 140s Unpacking libjbig0:arm64 (2.1-6.1ubuntu2) ... 140s Selecting previously unselected package liblerc4:arm64. 140s Preparing to unpack .../005-liblerc4_4.0.0+ds-5ubuntu1_arm64.deb ... 140s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 140s Selecting previously unselected package libsharpyuv0:arm64. 140s Preparing to unpack .../006-libsharpyuv0_1.5.0-0.1_arm64.deb ... 140s Unpacking libsharpyuv0:arm64 (1.5.0-0.1) ... 140s Selecting previously unselected package libwebp7:arm64. 140s Preparing to unpack .../007-libwebp7_1.5.0-0.1_arm64.deb ... 140s Unpacking libwebp7:arm64 (1.5.0-0.1) ... 140s Selecting previously unselected package libtiff6:arm64. 141s Preparing to unpack .../008-libtiff6_4.7.0-3ubuntu3_arm64.deb ... 141s Unpacking libtiff6:arm64 (4.7.0-3ubuntu3) ... 141s Selecting previously unselected package libgdk-pixbuf-2.0-0:arm64. 141s Preparing to unpack .../009-libgdk-pixbuf-2.0-0_2.42.12+dfsg-5_arm64.deb ... 141s Unpacking libgdk-pixbuf-2.0-0:arm64 (2.42.12+dfsg-5) ... 141s Selecting previously unselected package gtk-update-icon-cache. 141s Preparing to unpack .../010-gtk-update-icon-cache_4.20.1+ds-2_arm64.deb ... 141s No diversion 'diversion of /usr/sbin/update-icon-caches to /usr/sbin/update-icon-caches.gtk2 by libgtk-3-bin', none removed. 141s No diversion 'diversion of /usr/share/man/man8/update-icon-caches.8.gz to /usr/share/man/man8/update-icon-caches.gtk2.8.gz by libgtk-3-bin', none removed. 141s Unpacking gtk-update-icon-cache (4.20.1+ds-2) ... 141s Selecting previously unselected package hicolor-icon-theme. 141s Preparing to unpack .../011-hicolor-icon-theme_0.18-2_all.deb ... 141s Unpacking hicolor-icon-theme (0.18-2) ... 141s Selecting previously unselected package adwaita-icon-theme. 141s Preparing to unpack .../012-adwaita-icon-theme_49.0-1_all.deb ... 141s Unpacking adwaita-icon-theme (49.0-1) ... 141s Selecting previously unselected package at-spi2-common. 141s Preparing to unpack .../013-at-spi2-common_2.57.1-1_all.deb ... 141s Unpacking at-spi2-common (2.57.1-1) ... 141s Selecting previously unselected package libfile-which-perl. 141s Preparing to unpack .../014-libfile-which-perl_1.27-2_all.deb ... 141s Unpacking libfile-which-perl (1.27-2) ... 141s Selecting previously unselected package leaff. 141s Preparing to unpack .../015-leaff_0~20150903+r2013-9build1_arm64.deb ... 141s Unpacking leaff (0~20150903+r2013-9build1) ... 141s Selecting previously unselected package meryl. 141s Preparing to unpack .../016-meryl_0~20150903+r2013-9build1_arm64.deb ... 141s Unpacking meryl (0~20150903+r2013-9build1) ... 141s Selecting previously unselected package aglfn. 141s Preparing to unpack .../017-aglfn_1.7+git20191031.4036a9c-2_all.deb ... 141s Unpacking aglfn (1.7+git20191031.4036a9c-2) ... 141s Selecting previously unselected package gnuplot-data. 141s Preparing to unpack .../018-gnuplot-data_6.0.2+dfsg1-2ubuntu1_all.deb ... 141s Unpacking gnuplot-data (6.0.2+dfsg1-2ubuntu1) ... 141s Selecting previously unselected package fonts-dejavu-mono. 141s Preparing to unpack .../019-fonts-dejavu-mono_2.37-8_all.deb ... 141s Unpacking fonts-dejavu-mono (2.37-8) ... 141s Selecting previously unselected package fonts-dejavu-core. 141s Preparing to unpack .../020-fonts-dejavu-core_2.37-8_all.deb ... 141s Unpacking fonts-dejavu-core (2.37-8) ... 141s Selecting previously unselected package fontconfig-config. 141s Preparing to unpack .../021-fontconfig-config_2.15.0-2.3ubuntu1_arm64.deb ... 142s Unpacking fontconfig-config (2.15.0-2.3ubuntu1) ... 142s Selecting previously unselected package libfontconfig1:arm64. 142s Preparing to unpack .../022-libfontconfig1_2.15.0-2.3ubuntu1_arm64.deb ... 142s Unpacking libfontconfig1:arm64 (2.15.0-2.3ubuntu1) ... 142s Selecting previously unselected package libpixman-1-0:arm64. 142s Preparing to unpack .../023-libpixman-1-0_0.44.0-3_arm64.deb ... 142s Unpacking libpixman-1-0:arm64 (0.44.0-3) ... 142s Selecting previously unselected package libxcb-render0:arm64. 142s Preparing to unpack .../024-libxcb-render0_1.17.0-2build1_arm64.deb ... 142s Unpacking libxcb-render0:arm64 (1.17.0-2build1) ... 142s Selecting previously unselected package libxcb-shm0:arm64. 142s Preparing to unpack .../025-libxcb-shm0_1.17.0-2build1_arm64.deb ... 142s Unpacking libxcb-shm0:arm64 (1.17.0-2build1) ... 142s Selecting previously unselected package libxrender1:arm64. 142s Preparing to unpack .../026-libxrender1_1%3a0.9.12-1_arm64.deb ... 142s Unpacking libxrender1:arm64 (1:0.9.12-1) ... 142s Selecting previously unselected package libcairo2:arm64. 142s Preparing to unpack .../027-libcairo2_1.18.4-1build1_arm64.deb ... 142s Unpacking libcairo2:arm64 (1.18.4-1build1) ... 142s Selecting previously unselected package libaom3:arm64. 142s Preparing to unpack .../028-libaom3_3.12.1-1_arm64.deb ... 142s Unpacking libaom3:arm64 (3.12.1-1) ... 142s Selecting previously unselected package libheif-plugin-aomdec:arm64. 142s Preparing to unpack .../029-libheif-plugin-aomdec_1.20.2-1_arm64.deb ... 142s Unpacking libheif-plugin-aomdec:arm64 (1.20.2-1) ... 142s Selecting previously unselected package libde265-0:arm64. 142s Preparing to unpack .../030-libde265-0_1.0.16-1_arm64.deb ... 142s Unpacking libde265-0:arm64 (1.0.16-1) ... 142s Selecting previously unselected package libheif-plugin-libde265:arm64. 142s Preparing to unpack .../031-libheif-plugin-libde265_1.20.2-1_arm64.deb ... 142s Unpacking libheif-plugin-libde265:arm64 (1.20.2-1) ... 142s Selecting previously unselected package libheif1:arm64. 142s Preparing to unpack .../032-libheif1_1.20.2-1_arm64.deb ... 142s Unpacking libheif1:arm64 (1.20.2-1) ... 142s Selecting previously unselected package libgomp1:arm64. 142s Preparing to unpack .../033-libgomp1_15.2.0-5ubuntu1_arm64.deb ... 142s Unpacking libgomp1:arm64 (15.2.0-5ubuntu1) ... 142s Selecting previously unselected package libimagequant0:arm64. 142s Preparing to unpack .../034-libimagequant0_2.18.0-1build1_arm64.deb ... 142s Unpacking libimagequant0:arm64 (2.18.0-1build1) ... 142s Selecting previously unselected package libxpm4:arm64. 142s Preparing to unpack .../035-libxpm4_1%3a3.5.17-1build2_arm64.deb ... 142s Unpacking libxpm4:arm64 (1:3.5.17-1build2) ... 142s Selecting previously unselected package libgd3:arm64. 142s Preparing to unpack .../036-libgd3_2.3.3-13ubuntu1_arm64.deb ... 142s Unpacking libgd3:arm64 (2.3.3-13ubuntu1) ... 142s Selecting previously unselected package liblua5.4-0:arm64. 142s Preparing to unpack .../037-liblua5.4-0_5.4.8-1_arm64.deb ... 142s Unpacking liblua5.4-0:arm64 (5.4.8-1) ... 142s Selecting previously unselected package fontconfig. 142s Preparing to unpack .../038-fontconfig_2.15.0-2.3ubuntu1_arm64.deb ... 142s Unpacking fontconfig (2.15.0-2.3ubuntu1) ... 142s Selecting previously unselected package libgraphite2-3:arm64. 142s Preparing to unpack .../039-libgraphite2-3_1.3.14-2ubuntu1_arm64.deb ... 142s Unpacking libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 142s Selecting previously unselected package libharfbuzz0b:arm64. 142s Preparing to unpack .../040-libharfbuzz0b_10.2.0-1_arm64.deb ... 142s Unpacking libharfbuzz0b:arm64 (10.2.0-1) ... 142s Selecting previously unselected package libthai-data. 142s Preparing to unpack .../041-libthai-data_0.1.29-2build1_all.deb ... 142s Unpacking libthai-data (0.1.29-2build1) ... 142s Selecting previously unselected package libdatrie1:arm64. 142s Preparing to unpack .../042-libdatrie1_0.2.13-4_arm64.deb ... 142s Unpacking libdatrie1:arm64 (0.2.13-4) ... 142s Selecting previously unselected package libthai0:arm64. 142s Preparing to unpack .../043-libthai0_0.1.29-2build1_arm64.deb ... 142s Unpacking libthai0:arm64 (0.1.29-2build1) ... 142s Selecting previously unselected package libpango-1.0-0:arm64. 142s Preparing to unpack .../044-libpango-1.0-0_1.56.3-1build1_arm64.deb ... 142s Unpacking libpango-1.0-0:arm64 (1.56.3-1build1) ... 142s Selecting previously unselected package libpangoft2-1.0-0:arm64. 142s Preparing to unpack .../045-libpangoft2-1.0-0_1.56.3-1build1_arm64.deb ... 142s Unpacking libpangoft2-1.0-0:arm64 (1.56.3-1build1) ... 143s Selecting previously unselected package libpangocairo-1.0-0:arm64. 143s Preparing to unpack .../046-libpangocairo-1.0-0_1.56.3-1build1_arm64.deb ... 143s Unpacking libpangocairo-1.0-0:arm64 (1.56.3-1build1) ... 143s Selecting previously unselected package libdouble-conversion3:arm64. 143s Preparing to unpack .../047-libdouble-conversion3_3.3.1-1build1_arm64.deb ... 143s Unpacking libdouble-conversion3:arm64 (3.3.1-1build1) ... 143s Selecting previously unselected package libicu76:arm64. 143s Preparing to unpack .../048-libicu76_76.1-4ubuntu2_arm64.deb ... 143s Unpacking libicu76:arm64 (76.1-4ubuntu2) ... 143s Selecting previously unselected package libpcre2-16-0:arm64. 143s Preparing to unpack .../049-libpcre2-16-0_10.46-1_arm64.deb ... 143s Unpacking libpcre2-16-0:arm64 (10.46-1) ... 143s Selecting previously unselected package libqt5core5t64:arm64. 143s Preparing to unpack .../050-libqt5core5t64_5.15.17+dfsg-1ubuntu1_arm64.deb ... 143s Unpacking libqt5core5t64:arm64 (5.15.17+dfsg-1ubuntu1) ... 143s Selecting previously unselected package libglvnd0:arm64. 143s Preparing to unpack .../051-libglvnd0_1.7.0-1build2_arm64.deb ... 143s Unpacking libglvnd0:arm64 (1.7.0-1build2) ... 143s Selecting previously unselected package libdrm-amdgpu1:arm64. 143s Preparing to unpack .../052-libdrm-amdgpu1_2.4.125-1_arm64.deb ... 143s Unpacking libdrm-amdgpu1:arm64 (2.4.125-1) ... 143s Selecting previously unselected package libx11-xcb1:arm64. 143s Preparing to unpack .../053-libx11-xcb1_2%3a1.8.12-1build1_arm64.deb ... 143s Unpacking libx11-xcb1:arm64 (2:1.8.12-1build1) ... 143s Selecting previously unselected package libxcb-dri3-0:arm64. 143s Preparing to unpack .../054-libxcb-dri3-0_1.17.0-2build1_arm64.deb ... 143s Unpacking libxcb-dri3-0:arm64 (1.17.0-2build1) ... 143s Selecting previously unselected package libxcb-present0:arm64. 143s Preparing to unpack .../055-libxcb-present0_1.17.0-2build1_arm64.deb ... 143s Unpacking libxcb-present0:arm64 (1.17.0-2build1) ... 143s Selecting previously unselected package libxcb-randr0:arm64. 143s Preparing to unpack .../056-libxcb-randr0_1.17.0-2build1_arm64.deb ... 143s Unpacking libxcb-randr0:arm64 (1.17.0-2build1) ... 143s Selecting previously unselected package libxcb-sync1:arm64. 143s Preparing to unpack .../057-libxcb-sync1_1.17.0-2build1_arm64.deb ... 143s Unpacking libxcb-sync1:arm64 (1.17.0-2build1) ... 143s Selecting previously unselected package libxcb-xfixes0:arm64. 143s Preparing to unpack .../058-libxcb-xfixes0_1.17.0-2build1_arm64.deb ... 143s Unpacking libxcb-xfixes0:arm64 (1.17.0-2build1) ... 143s Selecting previously unselected package libxshmfence1:arm64. 143s Preparing to unpack .../059-libxshmfence1_1.3.3-1_arm64.deb ... 143s Unpacking libxshmfence1:arm64 (1.3.3-1) ... 143s Selecting previously unselected package mesa-libgallium:arm64. 143s Preparing to unpack .../060-mesa-libgallium_25.2.3-1ubuntu1_arm64.deb ... 143s Unpacking mesa-libgallium:arm64 (25.2.3-1ubuntu1) ... 144s Selecting previously unselected package libgbm1:arm64. 144s Preparing to unpack .../061-libgbm1_25.2.3-1ubuntu1_arm64.deb ... 144s Unpacking libgbm1:arm64 (25.2.3-1ubuntu1) ... 144s Selecting previously unselected package libwayland-client0:arm64. 144s Preparing to unpack .../062-libwayland-client0_1.24.0-1build1_arm64.deb ... 144s Unpacking libwayland-client0:arm64 (1.24.0-1build1) ... 144s Selecting previously unselected package libegl-mesa0:arm64. 144s Preparing to unpack .../063-libegl-mesa0_25.2.3-1ubuntu1_arm64.deb ... 144s Unpacking libegl-mesa0:arm64 (25.2.3-1ubuntu1) ... 144s Selecting previously unselected package libegl1:arm64. 144s Preparing to unpack .../064-libegl1_1.7.0-1build2_arm64.deb ... 144s Unpacking libegl1:arm64 (1.7.0-1build2) ... 144s Selecting previously unselected package libxcb-glx0:arm64. 144s Preparing to unpack .../065-libxcb-glx0_1.17.0-2build1_arm64.deb ... 144s Unpacking libxcb-glx0:arm64 (1.17.0-2build1) ... 144s Selecting previously unselected package libxxf86vm1:arm64. 144s Preparing to unpack .../066-libxxf86vm1_1%3a1.1.4-1build4_arm64.deb ... 144s Unpacking libxxf86vm1:arm64 (1:1.1.4-1build4) ... 144s Selecting previously unselected package libvulkan1:arm64. 144s Preparing to unpack .../067-libvulkan1_1.4.321.0-1_arm64.deb ... 144s Unpacking libvulkan1:arm64 (1.4.321.0-1) ... 144s Selecting previously unselected package libgl1-mesa-dri:arm64. 144s Preparing to unpack .../068-libgl1-mesa-dri_25.2.3-1ubuntu1_arm64.deb ... 144s Unpacking libgl1-mesa-dri:arm64 (25.2.3-1ubuntu1) ... 144s Selecting previously unselected package libglx-mesa0:arm64. 144s Preparing to unpack .../069-libglx-mesa0_25.2.3-1ubuntu1_arm64.deb ... 144s Unpacking libglx-mesa0:arm64 (25.2.3-1ubuntu1) ... 144s Selecting previously unselected package libglx0:arm64. 144s Preparing to unpack .../070-libglx0_1.7.0-1build2_arm64.deb ... 144s Unpacking libglx0:arm64 (1.7.0-1build2) ... 144s Selecting previously unselected package libgl1:arm64. 144s Preparing to unpack .../071-libgl1_1.7.0-1build2_arm64.deb ... 144s Unpacking libgl1:arm64 (1.7.0-1build2) ... 144s Selecting previously unselected package x11-common. 144s Preparing to unpack .../072-x11-common_1%3a7.7+24ubuntu1_all.deb ... 144s Unpacking x11-common (1:7.7+24ubuntu1) ... 144s Selecting previously unselected package libice6:arm64. 144s Preparing to unpack .../073-libice6_2%3a1.1.1-1_arm64.deb ... 144s Unpacking libice6:arm64 (2:1.1.1-1) ... 144s Selecting previously unselected package libmtdev1t64:arm64. 144s Preparing to unpack .../074-libmtdev1t64_1.1.7-1_arm64.deb ... 144s Unpacking libmtdev1t64:arm64 (1.1.7-1) ... 144s Selecting previously unselected package libgudev-1.0-0:arm64. 144s Preparing to unpack .../075-libgudev-1.0-0_1%3a238-7_arm64.deb ... 144s Unpacking libgudev-1.0-0:arm64 (1:238-7) ... 144s Selecting previously unselected package libwacom-common. 144s Preparing to unpack .../076-libwacom-common_2.16.1-1_all.deb ... 144s Unpacking libwacom-common (2.16.1-1) ... 144s Selecting previously unselected package libwacom9:arm64. 144s Preparing to unpack .../077-libwacom9_2.16.1-1_arm64.deb ... 144s Unpacking libwacom9:arm64 (2.16.1-1) ... 144s Selecting previously unselected package libinput-bin. 144s Preparing to unpack .../078-libinput-bin_1.28.1-1build1_arm64.deb ... 144s Unpacking libinput-bin (1.28.1-1build1) ... 144s Selecting previously unselected package libinput10:arm64. 144s Preparing to unpack .../079-libinput10_1.28.1-1build1_arm64.deb ... 144s Unpacking libinput10:arm64 (1.28.1-1build1) ... 144s Selecting previously unselected package libmd4c0:arm64. 144s Preparing to unpack .../080-libmd4c0_0.5.2-2_arm64.deb ... 144s Unpacking libmd4c0:arm64 (0.5.2-2) ... 144s Selecting previously unselected package libqt5dbus5t64:arm64. 144s Preparing to unpack .../081-libqt5dbus5t64_5.15.17+dfsg-1ubuntu1_arm64.deb ... 144s Unpacking libqt5dbus5t64:arm64 (5.15.17+dfsg-1ubuntu1) ... 144s Selecting previously unselected package libqt5network5t64:arm64. 144s Preparing to unpack .../082-libqt5network5t64_5.15.17+dfsg-1ubuntu1_arm64.deb ... 144s Unpacking libqt5network5t64:arm64 (5.15.17+dfsg-1ubuntu1) ... 145s Selecting previously unselected package libsm6:arm64. 145s Preparing to unpack .../083-libsm6_2%3a1.2.6-1_arm64.deb ... 145s Unpacking libsm6:arm64 (2:1.2.6-1) ... 145s Selecting previously unselected package libxcb-icccm4:arm64. 145s Preparing to unpack .../084-libxcb-icccm4_0.4.2-1_arm64.deb ... 145s Unpacking libxcb-icccm4:arm64 (0.4.2-1) ... 145s Selecting previously unselected package libxcb-util1:arm64. 145s Preparing to unpack .../085-libxcb-util1_0.4.1-1_arm64.deb ... 145s Unpacking libxcb-util1:arm64 (0.4.1-1) ... 145s Selecting previously unselected package libxcb-image0:arm64. 145s Preparing to unpack .../086-libxcb-image0_0.4.0-2build1_arm64.deb ... 145s Unpacking libxcb-image0:arm64 (0.4.0-2build1) ... 145s Selecting previously unselected package libxcb-keysyms1:arm64. 145s Preparing to unpack .../087-libxcb-keysyms1_0.4.1-1_arm64.deb ... 145s Unpacking libxcb-keysyms1:arm64 (0.4.1-1) ... 145s Selecting previously unselected package libxcb-render-util0:arm64. 145s Preparing to unpack .../088-libxcb-render-util0_0.3.10-1_arm64.deb ... 145s Unpacking libxcb-render-util0:arm64 (0.3.10-1) ... 145s Selecting previously unselected package libxcb-shape0:arm64. 145s Preparing to unpack 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.../094-libqt5gui5t64_5.15.17+dfsg-1ubuntu1_arm64.deb ... 145s Unpacking libqt5gui5t64:arm64 (5.15.17+dfsg-1ubuntu1) ... 145s Selecting previously unselected package libavahi-common-data:arm64. 145s Preparing to unpack .../095-libavahi-common-data_0.8-16ubuntu3_arm64.deb ... 145s Unpacking libavahi-common-data:arm64 (0.8-16ubuntu3) ... 145s Selecting previously unselected package libavahi-common3:arm64. 145s Preparing to unpack .../096-libavahi-common3_0.8-16ubuntu3_arm64.deb ... 145s Unpacking libavahi-common3:arm64 (0.8-16ubuntu3) ... 145s Selecting previously unselected package libavahi-client3:arm64. 145s Preparing to unpack .../097-libavahi-client3_0.8-16ubuntu3_arm64.deb ... 145s Unpacking libavahi-client3:arm64 (0.8-16ubuntu3) ... 145s Selecting previously unselected package libcups2t64:arm64. 145s Preparing to unpack .../098-libcups2t64_2.4.12-0ubuntu3_arm64.deb ... 145s Unpacking libcups2t64:arm64 (2.4.12-0ubuntu3) ... 145s Selecting previously unselected package libqt5widgets5t64:arm64. 145s Preparing to unpack .../099-libqt5widgets5t64_5.15.17+dfsg-1ubuntu1_arm64.deb ... 145s Unpacking libqt5widgets5t64:arm64 (5.15.17+dfsg-1ubuntu1) ... 145s Selecting previously unselected package libqt5printsupport5t64:arm64. 145s Preparing to unpack .../100-libqt5printsupport5t64_5.15.17+dfsg-1ubuntu1_arm64.deb ... 145s Unpacking libqt5printsupport5t64:arm64 (5.15.17+dfsg-1ubuntu1) ... 145s Selecting previously unselected package libqt5svg5:arm64. 145s Preparing to unpack .../101-libqt5svg5_5.15.17-1_arm64.deb ... 145s Unpacking libqt5svg5:arm64 (5.15.17-1) ... 145s Selecting previously unselected package libwebpmux3:arm64. 145s Preparing to unpack .../102-libwebpmux3_1.5.0-0.1_arm64.deb ... 145s Unpacking libwebpmux3:arm64 (1.5.0-0.1) ... 146s Selecting previously unselected package libpcre2-32-0:arm64. 146s Preparing to unpack .../103-libpcre2-32-0_10.46-1_arm64.deb ... 146s Unpacking libpcre2-32-0:arm64 (10.46-1) ... 146s Selecting previously unselected package libwxbase3.2-1t64:arm64. 146s Preparing to unpack .../104-libwxbase3.2-1t64_3.2.8+dfsg-2_arm64.deb ... 146s Unpacking libwxbase3.2-1t64:arm64 (3.2.8+dfsg-2) ... 146s Selecting previously unselected package libcairo-gobject2:arm64. 146s Preparing to unpack .../105-libcairo-gobject2_1.18.4-1build1_arm64.deb ... 146s Unpacking libcairo-gobject2:arm64 (1.18.4-1build1) ... 146s Selecting previously unselected package libatk1.0-0t64:arm64. 146s Preparing to unpack .../106-libatk1.0-0t64_2.57.1-1_arm64.deb ... 146s Unpacking libatk1.0-0t64:arm64 (2.57.1-1) ... 146s Selecting previously unselected package libxi6:arm64. 146s Preparing to unpack .../107-libxi6_2%3a1.8.2-1_arm64.deb ... 146s Unpacking libxi6:arm64 (2:1.8.2-1) ... 146s Selecting previously unselected package libatspi2.0-0t64:arm64. 146s Preparing to unpack .../108-libatspi2.0-0t64_2.57.1-1_arm64.deb ... 146s Unpacking libatspi2.0-0t64:arm64 (2.57.1-1) ... 146s Selecting previously unselected package libatk-bridge2.0-0t64:arm64. 146s Preparing to unpack .../109-libatk-bridge2.0-0t64_2.57.1-1_arm64.deb ... 146s Unpacking libatk-bridge2.0-0t64:arm64 (2.57.1-1) ... 146s Selecting previously unselected package liblcms2-2:arm64. 146s Preparing to unpack .../110-liblcms2-2_2.16-2_arm64.deb ... 146s Unpacking liblcms2-2:arm64 (2.16-2) ... 146s Selecting previously unselected package libcolord2:arm64. 146s Preparing to unpack .../111-libcolord2_1.4.7-3build1_arm64.deb ... 146s Unpacking libcolord2:arm64 (1.4.7-3build1) ... 146s Selecting previously unselected package libepoxy0:arm64. 146s Preparing to unpack .../112-libepoxy0_1.5.10-2_arm64.deb ... 146s Unpacking libepoxy0:arm64 (1.5.10-2) ... 146s Selecting previously unselected package libwayland-cursor0:arm64. 146s Preparing to unpack .../113-libwayland-cursor0_1.24.0-1build1_arm64.deb ... 146s Unpacking libwayland-cursor0:arm64 (1.24.0-1build1) ... 146s Selecting previously unselected package libwayland-egl1:arm64. 146s Preparing to unpack .../114-libwayland-egl1_1.24.0-1build1_arm64.deb ... 146s Unpacking libwayland-egl1:arm64 (1.24.0-1build1) ... 146s Selecting previously unselected package libxcomposite1:arm64. 146s Preparing to unpack .../115-libxcomposite1_1%3a0.4.6-1_arm64.deb ... 146s Unpacking libxcomposite1:arm64 (1:0.4.6-1) ... 146s Selecting previously unselected package libxfixes3:arm64. 146s Preparing to unpack .../116-libxfixes3_1%3a6.0.0-2build1_arm64.deb ... 146s Unpacking libxfixes3:arm64 (1:6.0.0-2build1) ... 146s Selecting previously unselected package libxcursor1:arm64. 146s Preparing to unpack .../117-libxcursor1_1%3a1.2.3-1_arm64.deb ... 146s Unpacking libxcursor1:arm64 (1:1.2.3-1) ... 146s Selecting previously unselected package libxdamage1:arm64. 146s Preparing to unpack .../118-libxdamage1_1%3a1.1.6-1build1_arm64.deb ... 146s Unpacking libxdamage1:arm64 (1:1.1.6-1build1) ... 146s Selecting previously unselected package libxinerama1:arm64. 146s Preparing to unpack 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147s Unpacking gnuplot-qt (6.0.2+dfsg1-2ubuntu1) ... 147s Selecting previously unselected package gnuplot. 147s Preparing to unpack .../130-gnuplot_6.0.2+dfsg1-2ubuntu1_all.deb ... 147s Unpacking gnuplot (6.0.2+dfsg1-2ubuntu1) ... 147s Selecting previously unselected package atac. 147s Preparing to unpack .../131-atac_0~20150903+r2013-9build1_arm64.deb ... 147s Unpacking atac (0~20150903+r2013-9build1) ... 147s Selecting previously unselected package sim4db. 147s Preparing to unpack .../132-sim4db_0~20150903+r2013-9build1_arm64.deb ... 147s Unpacking sim4db (0~20150903+r2013-9build1) ... 147s Selecting previously unselected package kmer. 147s Preparing to unpack .../133-kmer_0~20150903+r2013-9build1_all.deb ... 147s Unpacking kmer (0~20150903+r2013-9build1) ... 147s Selecting previously unselected package kmer-examples. 147s Preparing to unpack .../134-kmer-examples_0~20150903+r2013-9build1_all.deb ... 147s Unpacking kmer-examples (0~20150903+r2013-9build1) ... 147s Selecting previously unselected package libmeryl-dev. 147s Preparing to unpack .../135-libmeryl-dev_0~20150903+r2013-9build1_arm64.deb ... 147s Unpacking libmeryl-dev (0~20150903+r2013-9build1) ... 147s Selecting previously unselected package libkmer-dev. 147s Preparing to unpack .../136-libkmer-dev_0~20150903+r2013-9build1_arm64.deb ... 147s Unpacking libkmer-dev (0~20150903+r2013-9build1) ... 147s Setting up libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 147s Setting up libxcb-dri3-0:arm64 (1.17.0-2build1) ... 147s Setting up liblcms2-2:arm64 (2.16-2) ... 147s Setting up libpixman-1-0:arm64 (0.44.0-3) ... 147s Setting up leaff (0~20150903+r2013-9build1) ... 147s Setting up libsharpyuv0:arm64 (1.5.0-0.1) ... 147s Setting up libaom3:arm64 (3.12.1-1) ... 147s Setting up libx11-xcb1:arm64 (2:1.8.12-1build1) ... 147s Setting up libfile-which-perl (1.27-2) ... 147s Setting up libdouble-conversion3:arm64 (3.3.1-1build1) ... 147s Setting up libxdamage1:arm64 (1:1.1.6-1build1) ... 147s Setting up libxcb-xfixes0:arm64 (1.17.0-2build1) ... 147s Setting up liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 147s Setting up libxpm4:arm64 (1:3.5.17-1build2) ... 147s Setting up hicolor-icon-theme (0.18-2) ... 147s Setting up libxi6:arm64 (2:1.8.2-1) ... 147s Setting up libxcb-xinput0:arm64 (1.17.0-2build1) ... 147s Setting up libxrender1:arm64 (1:0.9.12-1) ... 147s Setting up libdatrie1:arm64 (0.2.13-4) ... 147s Setting up libxcb-render0:arm64 (1.17.0-2build1) ... 147s Setting up libglvnd0:arm64 (1.7.0-1build2) ... 147s Setting up libxcb-glx0:arm64 (1.17.0-2build1) ... 147s Setting up libgdk-pixbuf2.0-common (2.42.12+dfsg-5) ... 147s Setting up libxcb-keysyms1:arm64 (0.4.1-1) ... 147s Setting up libxcb-shape0:arm64 (1.17.0-2build1) ... 147s Setting up x11-common (1:7.7+24ubuntu1) ... 148s Setting up libdeflate0:arm64 (1.23-2) ... 148s Setting up libxcb-render-util0:arm64 (0.3.10-1) ... 148s Setting up libxcb-shm0:arm64 (1.17.0-2build1) ... 148s Setting up libxcb-icccm4:arm64 (0.4.2-1) ... 148s Setting up sim4db (0~20150903+r2013-9build1) ... 148s Setting up libgomp1:arm64 (15.2.0-5ubuntu1) ... 148s Setting up kmer-examples (0~20150903+r2013-9build1) ... 148s Setting up libjbig0:arm64 (2.1-6.1ubuntu2) ... 148s Setting up libpcre2-16-0:arm64 (10.46-1) ... 148s Setting up libcolord2:arm64 (1.4.7-3build1) ... 148s Setting up libxcb-util1:arm64 (0.4.1-1) ... 148s Setting up libxxf86vm1:arm64 (1:1.1.4-1build4) ... 148s Setting up libxcb-xkb1:arm64 (1.17.0-2build1) ... 148s Setting up libxcb-image0:arm64 (0.4.0-2build1) ... 148s Setting up libxcb-present0:arm64 (1.17.0-2build1) ... 148s Setting up libdconf1:arm64 (0.40.0-5willsync1) ... 148s Setting up libpcre2-32-0:arm64 (10.46-1) ... 148s Setting up libxcb-xinerama0:arm64 (1.17.0-2build1) ... 148s Setting up libepoxy0:arm64 (1.5.10-2) ... 148s Setting up libxfixes3:arm64 (1:6.0.0-2build1) ... 148s Setting up libxcb-sync1:arm64 (1.17.0-2build1) ... 148s Setting up aglfn (1.7+git20191031.4036a9c-2) ... 148s Setting up libavahi-common-data:arm64 (0.8-16ubuntu3) ... 148s Setting up libatspi2.0-0t64:arm64 (2.57.1-1) ... 148s Setting up libxinerama1:arm64 (2:1.1.4-3build1) ... 148s Setting up libimagequant0:arm64 (2.18.0-1build1) ... 148s Setting up libxkbcommon-x11-0:arm64 (1.7.0-2.1) ... 148s Setting up fonts-dejavu-mono (2.37-8) ... 148s Setting up libxrandr2:arm64 (2:1.5.4-1) ... 148s Setting up libmeryl-dev (0~20150903+r2013-9build1) ... 148s Setting up fonts-dejavu-core (2.37-8) ... 148s Setting up libjpeg-turbo8:arm64 (2.1.5-4ubuntu2) ... 148s Setting up libvulkan1:arm64 (1.4.321.0-1) ... 148s Setting up libwebp7:arm64 (1.5.0-0.1) ... 148s Setting up libmtdev1t64:arm64 (1.1.7-1) ... 148s Setting up libxshmfence1:arm64 (1.3.3-1) ... 148s Setting up at-spi2-common (2.57.1-1) ... 148s Setting up libxcb-randr0:arm64 (1.17.0-2build1) ... 148s Setting up libmd4c0:arm64 (0.5.2-2) ... 148s Setting up liblua5.4-0:arm64 (5.4.8-1) ... 148s Setting up libharfbuzz0b:arm64 (10.2.0-1) ... 148s Setting up libthai-data (0.1.29-2build1) ... 148s Setting up libwayland-egl1:arm64 (1.24.0-1build1) ... 148s Setting up libicu76:arm64 (76.1-4ubuntu2) ... 148s Setting up libwxbase3.2-1t64:arm64 (3.2.8+dfsg-2) ... 148s Setting up libde265-0:arm64 (1.0.16-1) ... 148s Setting up meryl (0~20150903+r2013-9build1) ... 148s Setting up libwebpmux3:arm64 (1.5.0-0.1) ... 148s Setting up libxcomposite1:arm64 (1:0.4.6-1) ... 148s Setting up libgudev-1.0-0:arm64 (1:238-7) ... 148s Setting up libdrm-amdgpu1:arm64 (2.4.125-1) ... 148s Setting up libwacom-common (2.16.1-1) ... 148s Setting up libwayland-client0:arm64 (1.24.0-1build1) ... 148s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 148s Setting up gnuplot-data (6.0.2+dfsg1-2ubuntu1) ... 148s Setting up libice6:arm64 (2:1.1.1-1) ... 148s Setting up mesa-libgallium:arm64 (25.2.3-1ubuntu1) ... 148s Setting up libatk1.0-0t64:arm64 (2.57.1-1) ... 148s Setting up libgbm1:arm64 (25.2.3-1ubuntu1) ... 148s Setting up libwacom9:arm64 (2.16.1-1) ... 148s Setting up fontconfig-config (2.15.0-2.3ubuntu1) ... 148s Setting up libxtst6:arm64 (2:1.2.5-1) ... 148s Setting up libxcursor1:arm64 (1:1.2.3-1) ... 148s Setting up libgl1-mesa-dri:arm64 (25.2.3-1ubuntu1) ... 148s Setting up libavahi-common3:arm64 (0.8-16ubuntu3) ... 148s Setting up dconf-service (0.40.0-5willsync1) ... 148s Setting up libinput-bin (1.28.1-1build1) ... 148s Setting up libthai0:arm64 (0.1.29-2build1) ... 148s Setting up libqt5core5t64:arm64 (5.15.17+dfsg-1ubuntu1) ... 148s Setting up libegl-mesa0:arm64 (25.2.3-1ubuntu1) ... 148s Setting up libkmer-dev (0~20150903+r2013-9build1) ... 148s Setting up libtiff6:arm64 (4.7.0-3ubuntu3) ... 148s Setting up libwayland-cursor0:arm64 (1.24.0-1build1) ... 148s Setting up libegl1:arm64 (1.7.0-1build2) ... 148s Setting up libgdk-pixbuf-2.0-0:arm64 (2.42.12+dfsg-5) ... 148s Setting up libfontconfig1:arm64 (2.15.0-2.3ubuntu1) ... 148s Setting up libsm6:arm64 (2:1.2.6-1) ... 148s Setting up libavahi-client3:arm64 (0.8-16ubuntu3) ... 148s Setting up libatk-bridge2.0-0t64:arm64 (2.57.1-1) ... 148s Setting up libinput10:arm64 (1.28.1-1build1) ... 148s Setting up gtk-update-icon-cache (4.20.1+ds-2) ... 148s Setting up fontconfig (2.15.0-2.3ubuntu1) ... 150s Regenerating fonts cache... done. 150s Setting up libqt5dbus5t64:arm64 (5.15.17+dfsg-1ubuntu1) ... 150s Setting up libglx-mesa0:arm64 (25.2.3-1ubuntu1) ... 150s Setting up libglx0:arm64 (1.7.0-1build2) ... 150s Setting up dconf-gsettings-backend:arm64 (0.40.0-5willsync1) ... 150s Setting up libpango-1.0-0:arm64 (1.56.3-1build1) ... 150s Setting up libqt5network5t64:arm64 (5.15.17+dfsg-1ubuntu1) ... 150s Setting up libcairo2:arm64 (1.18.4-1build1) ... 150s Setting up libgl1:arm64 (1.7.0-1build2) ... 150s Setting up adwaita-icon-theme (49.0-1) ... 150s update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode 150s Setting up libnotify4:arm64 (0.8.6-2) ... 150s Setting up libcairo-gobject2:arm64 (1.18.4-1build1) ... 150s Setting up libpangoft2-1.0-0:arm64 (1.56.3-1build1) ... 150s Setting up libcups2t64:arm64 (2.4.12-0ubuntu3) ... 150s Setting up libgtk-3-common (3.24.50-1ubuntu2) ... 150s Setting up libpangocairo-1.0-0:arm64 (1.56.3-1build1) ... 150s Setting up libqt5gui5t64:arm64 (5.15.17+dfsg-1ubuntu1) ... 150s Setting up libqt5widgets5t64:arm64 (5.15.17+dfsg-1ubuntu1) ... 150s Setting up libqt5svg5:arm64 (5.15.17-1) ... 150s Setting up libqt5printsupport5t64:arm64 (5.15.17+dfsg-1ubuntu1) ... 150s Setting up libheif-plugin-aomdec:arm64 (1.20.2-1) ... 150s Setting up libheif-plugin-libde265:arm64 (1.20.2-1) ... 150s Setting up libheif1:arm64 (1.20.2-1) ... 150s Setting up libgd3:arm64 (2.3.3-13ubuntu1) ... 150s Processing triggers for udev (257.9-0ubuntu2) ... 150s Processing triggers for libc-bin (2.42-0ubuntu3) ... 151s Processing triggers for man-db (2.13.1-1) ... 152s Processing triggers for libglib2.0-0t64:arm64 (2.86.0-2) ... 152s Setting up libgtk-3-0t64:arm64 (3.24.50-1ubuntu2) ... 152s Setting up libwxgtk3.2-1t64:arm64 (3.2.8+dfsg-2) ... 152s Setting up gnuplot-qt (6.0.2+dfsg1-2ubuntu1) ... 152s update-alternatives: using /usr/bin/gnuplot-qt to provide /usr/bin/gnuplot (gnuplot) in auto mode 152s Setting up gnuplot (6.0.2+dfsg1-2ubuntu1) ... 152s Setting up atac (0~20150903+r2013-9build1) ... 152s Setting up kmer (0~20150903+r2013-9build1) ... 152s Processing triggers for libc-bin (2.42-0ubuntu3) ... 154s autopkgtest [18:38:00]: test sim4db-unit-test: [----------------------- 155s Testing sim4 for intra-species alignment... 155s 155s Testing sim4cc for inter-species alignment... 155s 157s RESULTS: OK 157s 157s autopkgtest [18:38:03]: test sim4db-unit-test: -----------------------] 158s autopkgtest [18:38:04]: test sim4db-unit-test: - - - - - - - - - - results - - - - - - - - - - 158s sim4db-unit-test PASS 158s autopkgtest [18:38:04]: test atac-unit-test: preparing testbed 158s Reading package lists... 159s Building dependency tree... 159s Reading state information... 159s Solving dependencies... 159s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 161s autopkgtest [18:38:07]: test atac-unit-test: [----------------------- 162s Rewriting '/tmp/autopkgtest.HgLuel/autopkgtest_tmp/GCF_000195855.1_ASM19585v1_genomic.fna' to '/tmp/autopkgtest.HgLuel/autopkgtest_tmp/meryldir/Lepr.fasta', removing newlines. 162s Rewriting '/tmp/autopkgtest.HgLuel/autopkgtest_tmp/GCF_000195955.2_ASM19595v2_genomic.fna' to '/tmp/autopkgtest.HgLuel/autopkgtest_tmp/meryldir/Tuber.fasta', removing newlines. 162s 162s /usr/bin/meryl -B -C -threads 2 -m 20 -s /tmp/autopkgtest.HgLuel/autopkgtest_tmp/meryldir/Lepr.fasta -o /tmp/autopkgtest.HgLuel/autopkgtest_tmp/meryldir/Lepr.ms20 162s 163s 163s /usr/bin/meryl -v -M lessthanorequal 1 -s /tmp/autopkgtest.HgLuel/autopkgtest_tmp/meryldir/Lepr.ms20 -o /tmp/autopkgtest.HgLuel/autopkgtest_tmp/meryldir/Lepr.ms20.le1 163s 163s 163s /usr/bin/meryl -B -C -threads 2 -m 20 -s /tmp/autopkgtest.HgLuel/autopkgtest_tmp/meryldir/Tuber.fasta -o /tmp/autopkgtest.HgLuel/autopkgtest_tmp/meryldir/Tuber.ms20 163s 164s 164s /usr/bin/meryl -v -M lessthanorequal 1 -s /tmp/autopkgtest.HgLuel/autopkgtest_tmp/meryldir/Tuber.ms20 -o /tmp/autopkgtest.HgLuel/autopkgtest_tmp/meryldir/Tuber.ms20.le1 164s 164s Finding the min count between Lepr.ms20.le1 and Tuber.ms20.le1. 164s 164s /usr/bin/meryl -M min -s /tmp/autopkgtest.HgLuel/autopkgtest_tmp/meryldir/Lepr.ms20.le1 -s /tmp/autopkgtest.HgLuel/autopkgtest_tmp/meryldir/Tuber.ms20.le1 -o /tmp/autopkgtest.HgLuel/autopkgtest_tmp/results/work/min.Lepr.ms20.le1.Tuber.ms20.le1 164s 165s includeSize is proportional to 1048608. 165s excludeSize is proportional to 15724920. 165s /tmp/autopkgtest.HgLuel/autopkgtest_tmp/results/work/min.Lepr.ms20.le1.Tuber.ms20.le1 has 33265 mers. 165s /tmp/autopkgtest.HgLuel/autopkgtest_tmp/meryldir/Lepr.ms20 has 3268184 mers. 165s includeSize is exactly 33265 mers. 165s excludeSize is exactly 3234919 mers. 165s 165s /usr/bin/../lib/atac/bin/seatac -verbose -mersize 20 -minlength 20 -maxgap 0 -numthreads 4 -table /tmp/autopkgtest.HgLuel/autopkgtest_tmp/meryldir/Lepr.fasta -stream /tmp/autopkgtest.HgLuel/autopkgtest_tmp/meryldir/Tuber.fasta -only /tmp/autopkgtest.HgLuel/autopkgtest_tmp/results/work/LeprvsTuber.include -output /tmp/autopkgtest.HgLuel/autopkgtest_tmp/results/work/LeprvsTuber-segment-000.matches -filtername /usr/bin/../lib/atac/lib/filter-heavychains.so -filteropts "-1 Lepr -2 Tuber -S 100 -J 100000" > /tmp/autopkgtest.HgLuel/autopkgtest_tmp/results/work/LeprvsTuber-000.out 2>&1 165s 166s 166s /usr/bin/../lib/atac/bin/matchExtender /tmp/autopkgtest.HgLuel/autopkgtest_tmp/results/work/LeprvsTuber.header /tmp/autopkgtest.HgLuel/autopkgtest_tmp/results/work/LeprvsTuber-segment-000.matches > /tmp/autopkgtest.HgLuel/autopkgtest_tmp/results/work/LeprvsTuber.matches.extended 166s 166s WARNING: TMPDIR not set, defaulting to '/tmp/autopkgtest.HgLuel/autopkgtest_tmp/results'. 166s 166s python3 /usr/bin/../lib/atac/bin/AtacDriver.py /tmp/autopkgtest.HgLuel/autopkgtest_tmp/results/work/LeprvsTuber.matches.extended 166s 167s Read checkpoint in 0 seconds. 167s Creating /tmp/autopkgtest.HgLuel/autopkgtest_tmp/meryldir/Lepr.fasta.idxStore 167s Creating /tmp/autopkgtest.HgLuel/autopkgtest_tmp/meryldir/Tuber.fasta.idxStore 167s We need to make the raw matches. 167s runName = /tmp/autopkgtest.HgLuel/autopkgtest_tmp/results/work/LeprvsTuber.matches.extended 167s 167s Keep step=0 167s At step=0 167s Time elapsed=0.0002887248992919922 167s At uniqueFilter, step=1 167s Time elapsed=0.0002982616424560547 167s Running UniqueFilter 167s sort -T . -k 1,1 -k 2,2 -k 3n -k 4nr /tmp/autopkgtest.HgLuel/autopkgtest_tmp/results/tmp15uk3103 > /tmp/autopkgtest.HgLuel/autopkgtest_tmp/results/tmpz75lgpso 167s time elapsed is 0.004343986511230469 167s time elapsed is 0.00011563301086425781 167s sort -T . -k 1,1 -k 2,2 -k 3n -k 4nr /tmp/autopkgtest.HgLuel/autopkgtest_tmp/results/tmp6riw7_p1 > /tmp/autopkgtest.HgLuel/autopkgtest_tmp/results/tmp38kcxcl_ 167s time elapsed is 0.004019021987915039 167s time elapsed is 5.745887756347656e-05 167s At filterByMatchLength, step=2 167s Time elapsed=0.3166823387145996 167s Running filterByMatchLength 167s At trimMatchOverlaps, step=3 167s Time elapsed=0.3169562816619873 167s Start trimming for bp one-to-one-ness 167s trimMatchOverlapsInX: 167s #posgaps, #abuts, #overlaps, #contained, bp_trimmed= 0 0 0 0 0 167s 167s trimMatchOverlapsInY: 167s #posgaps, #abuts, #overlaps, #contained, bp_trimmed= 0 0 0 0 0 167s 167s Finished trimming for bp one-to-one-ness 167s At formPerfectRuns, step=4 167s Time elapsed=0.37480640411376953 167s from /tmp/autopkgtest.HgLuel/autopkgtest_tmp/results/work/LeprvsTuber.matches.extended.uniq.t40.trim making /tmp/autopkgtest.HgLuel/autopkgtest_tmp/results/work/LeprvsTuber.matches.extended.uniq.t40.trim.p6 167s formPerfectRuns step=0 167s formPerfectRuns step=1 167s formPerfectRuns step=2 167s formPerfectRuns step=3 167s At onlyKeepLongRuns, step=5 167s Time elapsed=0.4317648410797119 167s from /tmp/autopkgtest.HgLuel/autopkgtest_tmp/results/work/LeprvsTuber.matches.extended.uniq.t40.trim.p6 making /tmp/autopkgtest.HgLuel/autopkgtest_tmp/results/work/LeprvsTuber.matches.extended.uniq.t40.trim.p6.l100 167s At formPerfectRuns, step=6 167s Time elapsed=0.43206310272216797 167s Heal the perfect runs 167s formPerfectRuns step=0 167s formPerfectRuns step=1 167s formPerfectRuns step=2 167s formPerfectRuns step=3 167s At squeezeIntraRunGaps, step=7 167s Time elapsed=0.4889504909515381 167s from /tmp/autopkgtest.HgLuel/autopkgtest_tmp/results/work/LeprvsTuber.matches.extended.uniq.t40.trim.p6.l100.pr to /tmp/autopkgtest.HgLuel/autopkgtest_tmp/results/work/LeprvsTuber.matches.extended.uniq.t40.trim.p6.l100.pr.sq 167s countLines 0 inter_run_gap_count 0 closed_gap_count 0 squeezed 0 x_len 0 y_len 0 x_nonACGT 0 y_nonACGT 0 167s theIsolatedSNPcount = 0 167s completefillednotXY = 0 167s completefilledXnotY = 0 167s completefilledYnotX = 0 167s completefilledXandY = 0 167s At TrimMatchOverlaps, step=8 167s Time elapsed=0.48926210403442383 167s Start trimming for bp one-to-one-ness 167s trimMatchOverlapsInX: 167s #posgaps, #abuts, #overlaps, #contained, bp_trimmed= 0 0 0 0 0 167s 167s trimMatchOverlapsInY: 167s #posgaps, #abuts, #overlaps, #contained, bp_trimmed= 0 0 0 0 0 167s 167s Finished trimming for bp one-to-one-ness 167s At RunsAsMatches, step=9 167s Time elapsed=0.5426375865936279 167s At fillIntraRunGaps, step=10 167s Time elapsed=0.542994499206543 167s fill the intrarun gaps 167s begin 167s countLines=0 167s countLines 0 inter_run_gap_count 0 167s At TrimMatchOverlaps, step=11 167s Time elapsed=0.5433235168457031 167s trim the overlaps 167s trimMatchOverlapsInX: 167s #posgaps, #abuts, #overlaps, #contained, bp_trimmed= 0 0 0 0 0 167s 167s trimMatchOverlapsInY: 167s #posgaps, #abuts, #overlaps, #contained, bp_trimmed= 0 0 0 0 0 167s 167s Ran in 0 seconds. 167s 167s /usr/bin/../lib/atac/bin/correctGaps -m /tmp/autopkgtest.HgLuel/autopkgtest_tmp/results/work/LeprvsTuber.matches.extended.chained.atac -l /tmp/autopkgtest.HgLuel/autopkgtest_tmp/results/work/LeprvsTuber.matches.extended.chained.gapsclosed.log > /tmp/autopkgtest.HgLuel/autopkgtest_tmp/results/work/LeprvsTuber.matches.extended.chained.gapsclosed.atac 167s 167s 167s cd /tmp/autopkgtest.HgLuel/autopkgtest_tmp/results && /usr/bin/../lib/atac/bin/clumpMaker -c 5000 -1 -f /tmp/autopkgtest.HgLuel/autopkgtest_tmp/results/LeprvsTuber.atac > /tmp/autopkgtest.HgLuel/autopkgtest_tmp/results/LeprvsTuber.ref=Lepr.clumpCost=5000.atac 167s 167s 1 load the matches 167s 2 sort the matches 167s 3 score the matches 167s 4 mark clumps 167s 5 sort the matches 167s 6 output matches with clumps 167s 167s cd /tmp/autopkgtest.HgLuel/autopkgtest_tmp/results && /usr/bin/../lib/atac/bin/clumpMaker -c 5000 -2 -f /tmp/autopkgtest.HgLuel/autopkgtest_tmp/results/LeprvsTuber.atac > /tmp/autopkgtest.HgLuel/autopkgtest_tmp/results/LeprvsTuber.ref=Tuber.clumpCost=5000.atac 167s 167s 1 load the matches 167s 2 sort the matches 167s 3 score the matches 167s 4 mark clumps 167s 5 sort the matches 167s 6 output matches with clumps 167s 167s /usr/bin/../lib/atac/bin/statsGenerator -a /tmp/autopkgtest.HgLuel/autopkgtest_tmp/results/LeprvsTuber.atac -p /tmp/autopkgtest.HgLuel/autopkgtest_tmp/results/stats/LeprvsTuber -g A > /tmp/autopkgtest.HgLuel/autopkgtest_tmp/results/stats/LeprvsTuber.stats 167s 167s 167s perl /usr/bin/../lib/atac/bin/makeplot.pl u /tmp/autopkgtest.HgLuel/autopkgtest_tmp/results/LeprvsTuber.atac /tmp/autopkgtest.HgLuel/autopkgtest_tmp/results/stats/LeprvsTuber.matches.png 167s 167s 167s replot 167s ^ 167s "/tmp/autopkgtest.HgLuel/autopkgtest_tmp/results/stats/LeprvsTuber.matches.gp" line 24: no previous plot 167s 167s 167s perl /usr/bin/../lib/atac/bin/makeplot.pl r /tmp/autopkgtest.HgLuel/autopkgtest_tmp/results/LeprvsTuber.atac /tmp/autopkgtest.HgLuel/autopkgtest_tmp/results/stats/LeprvsTuber.runs.png 167s 167s 167s replot 167s ^ 167s "/tmp/autopkgtest.HgLuel/autopkgtest_tmp/results/stats/LeprvsTuber.runs.gp" line 24: no previous plot 167s 167s 167s Finished! Output is: 167s matches and runs -- /tmp/autopkgtest.HgLuel/autopkgtest_tmp/results/LeprvsTuber.atac 167s clumps -- /tmp/autopkgtest.HgLuel/autopkgtest_tmp/results/LeprvsTuber.*clump*.atac 167s RESULTS: OK 167s 168s autopkgtest [18:38:14]: test atac-unit-test: -----------------------] 168s atac-unit-test PASS 168s autopkgtest [18:38:14]: test atac-unit-test: - - - - - - - - - - results - - - - - - - - - - 169s autopkgtest [18:38:15]: @@@@@@@@@@@@@@@@@@@@ summary 169s sim4db-unit-test PASS 169s atac-unit-test PASS