0s autopkgtest [18:35:11]: starting date and time: 2025-10-18 18:35:11+0000 0s autopkgtest [18:35:11]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [18:35:11]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.svbopk5v/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults --apt-upgrade kineticstools --timeout-short=300 --timeout-copy=20000 --timeout-test=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=python3-defaults/3.13.7-2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-big --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-arm64-15.secgroup --name adt-resolute-arm64-kineticstools-20251018-183511-juju-7f2275-prod-proposed-migration-environment-15-bd1dc160-ef3e-44c0-b4b0-30dd4752dd3a --image adt/ubuntu-resolute-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 4s Creating nova instance adt-resolute-arm64-kineticstools-20251018-183511-juju-7f2275-prod-proposed-migration-environment-15-bd1dc160-ef3e-44c0-b4b0-30dd4752dd3a from image adt/ubuntu-resolute-arm64-server-20251018.img (UUID f7a49384-4e4d-4350-9a26-1f59236f89dd)... 63s autopkgtest [18:36:14]: testbed dpkg architecture: arm64 63s autopkgtest [18:36:14]: testbed apt version: 3.1.6ubuntu2 63s autopkgtest [18:36:14]: @@@@@@@@@@@@@@@@@@@@ test bed setup 63s autopkgtest [18:36:14]: testbed release detected to be: None 64s autopkgtest [18:36:15]: updating testbed package index (apt update) 65s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [83.3 kB] 65s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 65s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 65s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 65s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [16.7 kB] 65s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [5028 B] 65s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [456 kB] 65s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [50.7 kB] 65s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 Packages [99.7 kB] 65s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 Packages [43.8 kB] 65s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 Packages [322 kB] 65s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 Packages [6524 B] 66s Fetched 1083 kB in 1s (1060 kB/s) 67s Reading package lists... 68s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 68s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 68s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 68s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 70s Reading package lists... 70s Reading package lists... 71s Building dependency tree... 71s Reading state information... 71s Calculating upgrade... 71s The following packages will be upgraded: 71s apt flash-kernel gir1.2-girepository-2.0 libapt-pkg7.0 libgirepository-1.0-1 71s libpython3-stdlib lto-disabled-list python3 python3-minimal 72s 9 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 72s Need to get 2671 kB of archives. 72s After this operation, 66.6 kB of additional disk space will be used. 72s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 python3-minimal arm64 3.13.7-2 [27.8 kB] 72s Get:2 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 python3 arm64 3.13.7-2 [23.9 kB] 72s Get:3 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 libpython3-stdlib arm64 3.13.7-2 [10.6 kB] 72s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 libapt-pkg7.0 arm64 3.1.8ubuntu1 [1055 kB] 72s Get:5 http://ftpmaster.internal/ubuntu resolute/main arm64 apt arm64 3.1.8ubuntu1 [1373 kB] 72s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 libgirepository-1.0-1 arm64 1.86.0-6 [84.5 kB] 72s Get:7 http://ftpmaster.internal/ubuntu resolute/main arm64 gir1.2-girepository-2.0 arm64 1.86.0-6 [25.3 kB] 72s Get:8 http://ftpmaster.internal/ubuntu resolute/main arm64 flash-kernel arm64 3.109ubuntu7 [58.8 kB] 73s Get:9 http://ftpmaster.internal/ubuntu resolute/main arm64 lto-disabled-list all 71 [12.5 kB] 73s dpkg-preconfigure: unable to re-open stdin: No such file or directory 73s Fetched 2671 kB in 1s (2608 kB/s) 74s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83359 files and directories currently installed.) 74s Preparing to unpack .../python3-minimal_3.13.7-2_arm64.deb ... 74s Unpacking python3-minimal (3.13.7-2) over (3.13.7-1) ... 74s Setting up python3-minimal (3.13.7-2) ... 74s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83359 files and directories currently installed.) 74s Preparing to unpack .../0-python3_3.13.7-2_arm64.deb ... 74s running python pre-rtupdate hooks for python3.13... 74s Unpacking python3 (3.13.7-2) over (3.13.7-1) ... 75s Preparing to unpack .../1-libpython3-stdlib_3.13.7-2_arm64.deb ... 75s Unpacking libpython3-stdlib:arm64 (3.13.7-2) over (3.13.7-1) ... 75s Preparing to unpack .../2-libapt-pkg7.0_3.1.8ubuntu1_arm64.deb ... 75s Unpacking libapt-pkg7.0:arm64 (3.1.8ubuntu1) over (3.1.6ubuntu2) ... 75s Preparing to unpack .../3-apt_3.1.8ubuntu1_arm64.deb ... 75s Unpacking apt (3.1.8ubuntu1) over (3.1.6ubuntu2) ... 75s Preparing to unpack .../4-libgirepository-1.0-1_1.86.0-6_arm64.deb ... 75s Unpacking libgirepository-1.0-1:arm64 (1.86.0-6) over (1.84.0-1) ... 75s Preparing to unpack .../5-gir1.2-girepository-2.0_1.86.0-6_arm64.deb ... 76s Unpacking gir1.2-girepository-2.0:arm64 (1.86.0-6) over (1.84.0-1) ... 76s Preparing to unpack .../6-flash-kernel_3.109ubuntu7_arm64.deb ... 76s Unpacking flash-kernel (3.109ubuntu7) over (3.109ubuntu6) ... 76s Preparing to unpack .../7-lto-disabled-list_71_all.deb ... 76s Unpacking lto-disabled-list (71) over (69) ... 76s Setting up lto-disabled-list (71) ... 76s Setting up libgirepository-1.0-1:arm64 (1.86.0-6) ... 76s Setting up libapt-pkg7.0:arm64 (3.1.8ubuntu1) ... 76s Setting up libpython3-stdlib:arm64 (3.13.7-2) ... 76s Setting up apt (3.1.8ubuntu1) ... 77s Setting up python3 (3.13.7-2) ... 77s running python rtupdate hooks for python3.13... 77s running python post-rtupdate hooks for python3.13... 77s Setting up gir1.2-girepository-2.0:arm64 (1.86.0-6) ... 77s Setting up flash-kernel (3.109ubuntu7) ... 79s flash-kernel: deferring update (trigger activated) 79s Processing triggers for libc-bin (2.42-0ubuntu3) ... 79s Processing triggers for man-db (2.13.1-1) ... 82s Processing triggers for initramfs-tools (0.150ubuntu3) ... 82s update-initramfs: Generating /boot/initrd.img-6.17.0-5-generic 117s System running in EFI mode, skipping. 117s Processing triggers for flash-kernel (3.109ubuntu7) ... 117s System running in EFI mode, skipping. 117s autopkgtest [18:37:08]: upgrading testbed (apt dist-upgrade and autopurge) 119s Reading package lists... 120s Building dependency tree... 120s Reading state information... 120s Calculating upgrade... 121s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 121s Reading package lists... 121s Building dependency tree... 121s Reading state information... 122s Solving dependencies... 122s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 122s autopkgtest [18:37:13]: rebooting testbed after setup commands that affected boot 157s autopkgtest [18:37:48]: testbed running kernel: Linux 6.17.0-5-generic #5-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 22 09:50:31 UTC 2025 160s autopkgtest [18:37:51]: @@@@@@@@@@@@@@@@@@@@ apt-source kineticstools 165s Get:1 http://ftpmaster.internal/ubuntu resolute/universe kineticstools 0.6.1+git20220223.1326a4d+dfsg-6 (dsc) [2783 B] 165s Get:2 http://ftpmaster.internal/ubuntu resolute/universe kineticstools 0.6.1+git20220223.1326a4d+dfsg-6 (tar) [21.8 MB] 165s Get:3 http://ftpmaster.internal/ubuntu resolute/universe kineticstools 0.6.1+git20220223.1326a4d+dfsg-6 (diff) [11.1 kB] 165s gpgv: Signature made Sun Feb 9 11:20:52 2025 UTC 165s gpgv: using RSA key 8F6DE104377F3B11E741748731F3144544A1741A 165s gpgv: issuer "tchet@debian.org" 165s gpgv: Can't check signature: No public key 165s dpkg-source: warning: cannot verify inline signature for ./kineticstools_0.6.1+git20220223.1326a4d+dfsg-6.dsc: no acceptable signature found 168s autopkgtest [18:37:59]: testing package kineticstools version 0.6.1+git20220223.1326a4d+dfsg-6 168s autopkgtest [18:37:59]: build not needed 170s autopkgtest [18:38:01]: test command1: preparing testbed 170s Reading package lists... 170s Building dependency tree... 170s Reading state information... 171s Solving dependencies... 171s The following NEW packages will be installed: 171s fontconfig-config fonts-urw-base35 hdf5-tools kineticstools 171s kineticstools-data libaec0 libbigwig0t64 libblas3 libcairo2 libdeflate0 171s libfontconfig1 libfontenc1 libgfortran5 libgomp1 libgraphite2-3 171s libharfbuzz0b libhdf5-310 libhdf5-hl-310 libhts3t64 libhtscodecs2 171s libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery 171s libjs-jquery-hotkeys libjs-jquery-isonscreen libjs-jquery-metadata 171s libjs-jquery-tablesorter libjs-jquery-throttle-debounce liblapack3 171s liblcms2-2 liblerc4 libopenjp2-7 libpixman-1-0 libraqm0 libsharpyuv0 libsz2 171s libtiff6 libwebp7 libwebpdemux2 libwebpmux3 libxcb-render0 libxcb-shm0 171s libxrender1 python3-avro python3-biopython python3-cairo 171s python3-charset-normalizer python3-coverage python3-cram python3-decorator 171s python3-execnet python3-freetype python3-iniconfig python3-iso8601 171s python3-kineticstools python3-numpy python3-numpy-dev python3-packaging 171s python3-pbcommand python3-pbcore python3-pil python3-pluggy python3-pybigwig 171s python3-pysam python3-pytest python3-pytest-cov python3-pytest-xdist 171s python3-pytz python3-reportlab python3-rlpycairo python3-scipy python3-tz 171s sgml-base w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core 172s 0 upgraded, 80 newly installed, 0 to remove and 0 not upgraded. 172s Need to get 73.7 MB of archives. 172s After this operation, 230 MB of additional disk space will be used. 172s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-numpy-dev arm64 1:2.2.4+ds-1ubuntu1 [146 kB] 172s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 libblas3 arm64 3.12.1-6build1 [186 kB] 172s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 libgfortran5 arm64 15.2.0-5ubuntu1 [450 kB] 172s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 liblapack3 arm64 3.12.1-6build1 [2340 kB] 172s Get:5 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-numpy arm64 1:2.2.4+ds-1ubuntu1 [3986 kB] 173s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 libfontenc1 arm64 1:1.1.8-1build1 [13.9 kB] 173s Get:7 http://ftpmaster.internal/ubuntu resolute/main arm64 x11-common all 1:7.7+24ubuntu1 [22.4 kB] 173s Get:8 http://ftpmaster.internal/ubuntu resolute/main arm64 xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] 173s Get:9 http://ftpmaster.internal/ubuntu resolute/main arm64 xfonts-utils arm64 1:7.7+7 [95.6 kB] 173s Get:10 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-urw-base35 all 20200910-8 [11.0 MB] 173s Get:11 http://ftpmaster.internal/ubuntu resolute/main arm64 fontconfig-config arm64 2.15.0-2.3ubuntu1 [38.1 kB] 173s Get:12 http://ftpmaster.internal/ubuntu resolute/universe arm64 libaec0 arm64 1.1.3-1 [22.0 kB] 173s Get:13 http://ftpmaster.internal/ubuntu resolute/universe arm64 libsz2 arm64 1.1.3-1 [5254 B] 173s Get:14 http://ftpmaster.internal/ubuntu resolute/universe arm64 libhdf5-310 arm64 1.14.5+repack-3build1 [1331 kB] 173s Get:15 http://ftpmaster.internal/ubuntu resolute/universe arm64 libhdf5-hl-310 arm64 1.14.5+repack-3build1 [59.8 kB] 173s Get:16 http://ftpmaster.internal/ubuntu resolute/universe arm64 hdf5-tools arm64 1.14.5+repack-3build1 [366 kB] 173s Get:17 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-iso8601 all 2.1.0-2 [9136 B] 173s Get:18 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-pytz all 2025.2-3 [163 kB] 173s Get:19 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-tz all 2025.2-3 [1866 B] 173s Get:20 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-avro all 1.12.0+dfsg-1 [75.3 kB] 173s Get:21 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pbcommand all 2.1.1+git20231020.28d1635-1 [104 kB] 173s Get:22 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-charset-normalizer arm64 3.4.2-1 [125 kB] 173s Get:23 http://ftpmaster.internal/ubuntu resolute/main arm64 libgomp1 arm64 15.2.0-5ubuntu1 [148 kB] 173s Get:24 http://ftpmaster.internal/ubuntu resolute/main arm64 libimagequant0 arm64 2.18.0-1build1 [37.1 kB] 173s Get:25 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg-turbo8 arm64 2.1.5-4ubuntu2 [165 kB] 173s Get:26 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 173s Get:27 http://ftpmaster.internal/ubuntu resolute/main arm64 liblcms2-2 arm64 2.16-2 [170 kB] 173s Get:28 http://ftpmaster.internal/ubuntu resolute/main arm64 libopenjp2-7 arm64 2.5.3-2.1 [179 kB] 173s Get:29 http://ftpmaster.internal/ubuntu resolute/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB] 173s Get:30 http://ftpmaster.internal/ubuntu resolute/main arm64 libharfbuzz0b arm64 10.2.0-1 [490 kB] 174s Get:31 http://ftpmaster.internal/ubuntu resolute/main arm64 libraqm0 arm64 0.10.3-1 [15.0 kB] 174s Get:32 http://ftpmaster.internal/ubuntu resolute/main arm64 libdeflate0 arm64 1.23-2 [46.4 kB] 174s Get:33 http://ftpmaster.internal/ubuntu resolute/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB] 174s Get:34 http://ftpmaster.internal/ubuntu resolute/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB] 174s Get:35 http://ftpmaster.internal/ubuntu resolute/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB] 174s Get:36 http://ftpmaster.internal/ubuntu resolute/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB] 174s Get:37 http://ftpmaster.internal/ubuntu resolute/main arm64 libtiff6 arm64 4.7.0-3ubuntu3 [196 kB] 174s Get:38 http://ftpmaster.internal/ubuntu resolute/main arm64 libwebpdemux2 arm64 1.5.0-0.1 [12.5 kB] 174s Get:39 http://ftpmaster.internal/ubuntu resolute/main arm64 libwebpmux3 arm64 1.5.0-0.1 [25.4 kB] 174s Get:40 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-pil arm64 11.3.0-1ubuntu1 [483 kB] 174s Get:41 http://ftpmaster.internal/ubuntu resolute/main arm64 libfontconfig1 arm64 2.15.0-2.3ubuntu1 [144 kB] 174s Get:42 http://ftpmaster.internal/ubuntu resolute/main arm64 libpixman-1-0 arm64 0.44.0-3 [197 kB] 174s Get:43 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-render0 arm64 1.17.0-2build1 [18.1 kB] 174s Get:44 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-shm0 arm64 1.17.0-2build1 [6234 B] 174s Get:45 http://ftpmaster.internal/ubuntu resolute/main arm64 libxrender1 arm64 1:0.9.12-1 [19.5 kB] 174s Get:46 http://ftpmaster.internal/ubuntu resolute/main arm64 libcairo2 arm64 1.18.4-1build1 [592 kB] 174s Get:47 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-cairo arm64 1.27.0-2 [122 kB] 174s Get:48 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-freetype all 2.5.1-1 [92.3 kB] 174s Get:49 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-rlpycairo all 0.3.0-3 [9130 B] 174s Get:50 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-reportlab all 4.4.2-1 [1145 kB] 174s Get:51 http://ftpmaster.internal/ubuntu resolute/main arm64 sgml-base all 1.31+nmu1 [11.0 kB] 174s Get:52 http://ftpmaster.internal/ubuntu resolute/main arm64 xml-core all 0.19 [20.3 kB] 174s Get:53 http://ftpmaster.internal/ubuntu resolute/universe arm64 w3c-sgml-lib all 1.3-3 [280 kB] 174s Get:54 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-biopython arm64 1.85+dfsg-4 [1710 kB] 174s Get:55 http://ftpmaster.internal/ubuntu resolute/universe arm64 libhtscodecs2 arm64 1.6.1-2 [82.7 kB] 174s Get:56 http://ftpmaster.internal/ubuntu resolute/universe arm64 libhts3t64 arm64 1.21+ds-1 [441 kB] 174s Get:57 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pysam arm64 0.23.0+ds-1build1 [3621 kB] 174s Get:58 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pbcore all 2.1.2+dfsg-11 [2837 kB] 174s Get:59 http://ftpmaster.internal/ubuntu resolute/universe arm64 libbigwig0t64 arm64 0.4.7+dfsg-3.1build2 [29.9 kB] 174s Get:60 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pybigwig arm64 0.3.23+dfsg-1build3 [47.4 kB] 174s Get:61 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-decorator all 5.2.1-2 [28.1 kB] 174s Get:62 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-scipy arm64 1.15.3-1 [15.8 MB] 175s Get:63 http://ftpmaster.internal/ubuntu resolute/universe arm64 kineticstools-data all 0.6.1+git20220223.1326a4d+dfsg-6 [21.7 MB] 175s Get:64 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-kineticstools arm64 0.6.1+git20220223.1326a4d+dfsg-6 [47.6 kB] 175s Get:65 http://ftpmaster.internal/ubuntu resolute/universe arm64 kineticstools all 0.6.1+git20220223.1326a4d+dfsg-6 [12.9 kB] 175s Get:66 http://ftpmaster.internal/ubuntu resolute/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 175s Get:67 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-jquery-metadata all 12-4 [6582 B] 175s Get:68 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-jquery-tablesorter all 1:2.31.3+dfsg1-4 [192 kB] 175s Get:69 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-jquery-throttle-debounce all 1.1+dfsg.1-2 [12.5 kB] 175s Get:70 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-coverage arm64 7.8.2+dfsg1-1 [157 kB] 175s Get:71 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-cram all 0.7-6 [17.8 kB] 175s Get:72 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-execnet all 2.1.1-1 [33.4 kB] 175s Get:73 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-iniconfig all 1.1.1-2 [6024 B] 175s Get:74 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-packaging all 25.0-1 [52.8 kB] 175s Get:75 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pluggy all 1.5.0-1 [21.0 kB] 175s Get:76 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pytest all 8.3.5-2 [252 kB] 175s Get:77 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-jquery-hotkeys all 0.2.0-1 [13.3 kB] 175s Get:78 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjs-jquery-isonscreen all 1.2.0-1.1 [3244 B] 175s Get:79 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pytest-cov all 5.0.0-1 [21.3 kB] 175s Get:80 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pytest-xdist all 3.6.1-1 [33.8 kB] 176s Fetched 73.7 MB in 4s (19.9 MB/s) 176s Selecting previously unselected package python3-numpy-dev:arm64. 176s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83359 files and directories currently installed.) 176s Preparing to unpack .../00-python3-numpy-dev_1%3a2.2.4+ds-1ubuntu1_arm64.deb ... 176s Unpacking python3-numpy-dev:arm64 (1:2.2.4+ds-1ubuntu1) ... 176s Selecting previously unselected package libblas3:arm64. 176s Preparing to unpack .../01-libblas3_3.12.1-6build1_arm64.deb ... 176s Unpacking libblas3:arm64 (3.12.1-6build1) ... 176s Selecting previously unselected package libgfortran5:arm64. 177s Preparing to unpack .../02-libgfortran5_15.2.0-5ubuntu1_arm64.deb ... 177s Unpacking libgfortran5:arm64 (15.2.0-5ubuntu1) ... 177s Selecting previously unselected package liblapack3:arm64. 177s Preparing to unpack .../03-liblapack3_3.12.1-6build1_arm64.deb ... 177s Unpacking liblapack3:arm64 (3.12.1-6build1) ... 177s Selecting previously unselected package python3-numpy. 177s Preparing to unpack .../04-python3-numpy_1%3a2.2.4+ds-1ubuntu1_arm64.deb ... 177s Unpacking python3-numpy (1:2.2.4+ds-1ubuntu1) ... 177s Selecting previously unselected package libfontenc1:arm64. 177s Preparing to unpack .../05-libfontenc1_1%3a1.1.8-1build1_arm64.deb ... 177s Unpacking libfontenc1:arm64 (1:1.1.8-1build1) ... 177s Selecting previously unselected package x11-common. 177s Preparing to unpack .../06-x11-common_1%3a7.7+24ubuntu1_all.deb ... 177s Unpacking x11-common (1:7.7+24ubuntu1) ... 177s Selecting previously unselected package xfonts-encodings. 177s Preparing to unpack .../07-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ... 177s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ... 177s Selecting previously unselected package xfonts-utils. 177s Preparing to unpack .../08-xfonts-utils_1%3a7.7+7_arm64.deb ... 177s Unpacking xfonts-utils (1:7.7+7) ... 177s Selecting previously unselected package fonts-urw-base35. 177s Preparing to unpack .../09-fonts-urw-base35_20200910-8_all.deb ... 178s Unpacking fonts-urw-base35 (20200910-8) ... 178s Selecting previously unselected package fontconfig-config. 178s Preparing to unpack .../10-fontconfig-config_2.15.0-2.3ubuntu1_arm64.deb ... 178s Unpacking fontconfig-config (2.15.0-2.3ubuntu1) ... 178s Selecting previously unselected package libaec0:arm64. 178s Preparing to unpack .../11-libaec0_1.1.3-1_arm64.deb ... 178s Unpacking libaec0:arm64 (1.1.3-1) ... 178s Selecting previously unselected package libsz2:arm64. 178s Preparing to unpack .../12-libsz2_1.1.3-1_arm64.deb ... 178s Unpacking libsz2:arm64 (1.1.3-1) ... 178s Selecting previously unselected package libhdf5-310:arm64. 178s Preparing to unpack .../13-libhdf5-310_1.14.5+repack-3build1_arm64.deb ... 178s Unpacking libhdf5-310:arm64 (1.14.5+repack-3build1) ... 178s Selecting previously unselected package libhdf5-hl-310:arm64. 179s Preparing to unpack .../14-libhdf5-hl-310_1.14.5+repack-3build1_arm64.deb ... 179s Unpacking libhdf5-hl-310:arm64 (1.14.5+repack-3build1) ... 179s Selecting previously unselected package hdf5-tools. 179s Preparing to unpack .../15-hdf5-tools_1.14.5+repack-3build1_arm64.deb ... 179s Unpacking hdf5-tools (1.14.5+repack-3build1) ... 179s Selecting previously unselected package python3-iso8601. 179s Preparing to unpack .../16-python3-iso8601_2.1.0-2_all.deb ... 179s Unpacking python3-iso8601 (2.1.0-2) ... 179s Selecting previously unselected package python3-pytz. 179s Preparing to unpack .../17-python3-pytz_2025.2-3_all.deb ... 179s Unpacking python3-pytz (2025.2-3) ... 179s Selecting previously unselected package python3-tz. 179s Preparing to unpack .../18-python3-tz_2025.2-3_all.deb ... 179s Unpacking python3-tz (2025.2-3) ... 179s Selecting previously unselected package python3-avro. 179s Preparing to unpack .../19-python3-avro_1.12.0+dfsg-1_all.deb ... 179s Unpacking python3-avro (1.12.0+dfsg-1) ... 179s Selecting previously unselected package python3-pbcommand. 179s Preparing to unpack .../20-python3-pbcommand_2.1.1+git20231020.28d1635-1_all.deb ... 179s Unpacking python3-pbcommand (2.1.1+git20231020.28d1635-1) ... 179s Selecting previously unselected package python3-charset-normalizer. 179s Preparing to unpack .../21-python3-charset-normalizer_3.4.2-1_arm64.deb ... 179s Unpacking python3-charset-normalizer (3.4.2-1) ... 179s Selecting previously unselected package libgomp1:arm64. 179s Preparing to unpack .../22-libgomp1_15.2.0-5ubuntu1_arm64.deb ... 179s Unpacking libgomp1:arm64 (15.2.0-5ubuntu1) ... 179s Selecting previously unselected package libimagequant0:arm64. 179s Preparing to unpack .../23-libimagequant0_2.18.0-1build1_arm64.deb ... 179s Unpacking libimagequant0:arm64 (2.18.0-1build1) ... 179s Selecting previously unselected package libjpeg-turbo8:arm64. 179s Preparing to unpack .../24-libjpeg-turbo8_2.1.5-4ubuntu2_arm64.deb ... 179s Unpacking libjpeg-turbo8:arm64 (2.1.5-4ubuntu2) ... 179s Selecting previously unselected package libjpeg8:arm64. 179s Preparing to unpack .../25-libjpeg8_8c-2ubuntu11_arm64.deb ... 179s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 179s Selecting previously unselected package liblcms2-2:arm64. 179s Preparing to unpack .../26-liblcms2-2_2.16-2_arm64.deb ... 179s Unpacking liblcms2-2:arm64 (2.16-2) ... 179s Selecting previously unselected package libopenjp2-7:arm64. 179s Preparing to unpack .../27-libopenjp2-7_2.5.3-2.1_arm64.deb ... 179s Unpacking libopenjp2-7:arm64 (2.5.3-2.1) ... 180s Selecting previously unselected package libgraphite2-3:arm64. 180s Preparing to unpack .../28-libgraphite2-3_1.3.14-2ubuntu1_arm64.deb ... 180s Unpacking libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 180s Selecting previously unselected package libharfbuzz0b:arm64. 180s Preparing to unpack .../29-libharfbuzz0b_10.2.0-1_arm64.deb ... 180s Unpacking libharfbuzz0b:arm64 (10.2.0-1) ... 180s Selecting previously unselected package libraqm0:arm64. 180s Preparing to unpack .../30-libraqm0_0.10.3-1_arm64.deb ... 180s Unpacking libraqm0:arm64 (0.10.3-1) ... 180s Selecting previously unselected package libdeflate0:arm64. 180s Preparing to unpack .../31-libdeflate0_1.23-2_arm64.deb ... 180s Unpacking libdeflate0:arm64 (1.23-2) ... 180s Selecting previously unselected package libjbig0:arm64. 180s Preparing to unpack .../32-libjbig0_2.1-6.1ubuntu2_arm64.deb ... 180s Unpacking libjbig0:arm64 (2.1-6.1ubuntu2) ... 180s Selecting previously unselected package liblerc4:arm64. 180s Preparing to unpack .../33-liblerc4_4.0.0+ds-5ubuntu1_arm64.deb ... 180s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 180s Selecting previously unselected package libsharpyuv0:arm64. 180s Preparing to unpack .../34-libsharpyuv0_1.5.0-0.1_arm64.deb ... 180s Unpacking libsharpyuv0:arm64 (1.5.0-0.1) ... 180s Selecting previously unselected package libwebp7:arm64. 180s Preparing to unpack .../35-libwebp7_1.5.0-0.1_arm64.deb ... 180s Unpacking libwebp7:arm64 (1.5.0-0.1) ... 180s Selecting previously unselected package libtiff6:arm64. 180s Preparing to unpack .../36-libtiff6_4.7.0-3ubuntu3_arm64.deb ... 180s Unpacking libtiff6:arm64 (4.7.0-3ubuntu3) ... 180s Selecting previously unselected package libwebpdemux2:arm64. 180s Preparing to unpack .../37-libwebpdemux2_1.5.0-0.1_arm64.deb ... 180s Unpacking libwebpdemux2:arm64 (1.5.0-0.1) ... 180s Selecting previously unselected package libwebpmux3:arm64. 180s Preparing to unpack .../38-libwebpmux3_1.5.0-0.1_arm64.deb ... 180s Unpacking libwebpmux3:arm64 (1.5.0-0.1) ... 180s Selecting previously unselected package python3-pil:arm64. 180s Preparing to unpack .../39-python3-pil_11.3.0-1ubuntu1_arm64.deb ... 180s Unpacking python3-pil:arm64 (11.3.0-1ubuntu1) ... 180s Selecting previously unselected package libfontconfig1:arm64. 180s Preparing to unpack .../40-libfontconfig1_2.15.0-2.3ubuntu1_arm64.deb ... 180s Unpacking libfontconfig1:arm64 (2.15.0-2.3ubuntu1) ... 180s Selecting previously unselected package libpixman-1-0:arm64. 180s Preparing to unpack .../41-libpixman-1-0_0.44.0-3_arm64.deb ... 180s Unpacking libpixman-1-0:arm64 (0.44.0-3) ... 180s Selecting previously unselected package libxcb-render0:arm64. 180s Preparing to unpack .../42-libxcb-render0_1.17.0-2build1_arm64.deb ... 180s Unpacking libxcb-render0:arm64 (1.17.0-2build1) ... 180s Selecting previously unselected package libxcb-shm0:arm64. 180s Preparing to unpack .../43-libxcb-shm0_1.17.0-2build1_arm64.deb ... 180s Unpacking libxcb-shm0:arm64 (1.17.0-2build1) ... 180s Selecting previously unselected package libxrender1:arm64. 180s Preparing to unpack .../44-libxrender1_1%3a0.9.12-1_arm64.deb ... 180s Unpacking libxrender1:arm64 (1:0.9.12-1) ... 181s Selecting previously unselected package libcairo2:arm64. 181s Preparing to unpack .../45-libcairo2_1.18.4-1build1_arm64.deb ... 181s Unpacking libcairo2:arm64 (1.18.4-1build1) ... 181s Selecting previously unselected package python3-cairo. 181s Preparing to unpack .../46-python3-cairo_1.27.0-2_arm64.deb ... 181s Unpacking python3-cairo (1.27.0-2) ... 181s Selecting previously unselected package python3-freetype. 181s Preparing to unpack .../47-python3-freetype_2.5.1-1_all.deb ... 181s Unpacking python3-freetype (2.5.1-1) ... 181s Selecting previously unselected package python3-rlpycairo. 181s Preparing to unpack .../48-python3-rlpycairo_0.3.0-3_all.deb ... 181s Unpacking python3-rlpycairo (0.3.0-3) ... 181s Selecting previously unselected package python3-reportlab. 181s Preparing to unpack .../49-python3-reportlab_4.4.2-1_all.deb ... 181s Unpacking python3-reportlab (4.4.2-1) ... 181s Selecting previously unselected package sgml-base. 181s Preparing to unpack .../50-sgml-base_1.31+nmu1_all.deb ... 181s Unpacking sgml-base (1.31+nmu1) ... 181s Selecting previously unselected package xml-core. 181s Preparing to unpack .../51-xml-core_0.19_all.deb ... 181s Unpacking xml-core (0.19) ... 181s Selecting previously unselected package w3c-sgml-lib. 181s Preparing to unpack .../52-w3c-sgml-lib_1.3-3_all.deb ... 181s Unpacking w3c-sgml-lib (1.3-3) ... 181s Selecting previously unselected package python3-biopython. 181s Preparing to unpack .../53-python3-biopython_1.85+dfsg-4_arm64.deb ... 181s Unpacking python3-biopython (1.85+dfsg-4) ... 181s Selecting previously unselected package libhtscodecs2:arm64. 181s Preparing to unpack .../54-libhtscodecs2_1.6.1-2_arm64.deb ... 181s Unpacking libhtscodecs2:arm64 (1.6.1-2) ... 181s Selecting previously unselected package libhts3t64:arm64. 181s Preparing to unpack .../55-libhts3t64_1.21+ds-1_arm64.deb ... 181s Unpacking libhts3t64:arm64 (1.21+ds-1) ... 182s Selecting previously unselected package python3-pysam. 182s Preparing to unpack .../56-python3-pysam_0.23.0+ds-1build1_arm64.deb ... 182s Unpacking python3-pysam (0.23.0+ds-1build1) ... 182s Selecting previously unselected package python3-pbcore. 182s Preparing to unpack .../57-python3-pbcore_2.1.2+dfsg-11_all.deb ... 182s Unpacking python3-pbcore (2.1.2+dfsg-11) ... 182s Selecting previously unselected package libbigwig0t64:arm64. 182s Preparing to unpack .../58-libbigwig0t64_0.4.7+dfsg-3.1build2_arm64.deb ... 182s Unpacking libbigwig0t64:arm64 (0.4.7+dfsg-3.1build2) ... 182s Selecting previously unselected package python3-pybigwig. 182s Preparing to unpack .../59-python3-pybigwig_0.3.23+dfsg-1build3_arm64.deb ... 182s Unpacking python3-pybigwig (0.3.23+dfsg-1build3) ... 182s Selecting previously unselected package python3-decorator. 182s Preparing to unpack .../60-python3-decorator_5.2.1-2_all.deb ... 182s Unpacking python3-decorator (5.2.1-2) ... 182s Selecting previously unselected package python3-scipy. 182s Preparing to unpack .../61-python3-scipy_1.15.3-1_arm64.deb ... 182s Unpacking python3-scipy (1.15.3-1) ... 183s Selecting previously unselected package kineticstools-data. 183s Preparing to unpack .../62-kineticstools-data_0.6.1+git20220223.1326a4d+dfsg-6_all.deb ... 183s Unpacking kineticstools-data (0.6.1+git20220223.1326a4d+dfsg-6) ... 183s Selecting previously unselected package python3-kineticstools. 183s Preparing to unpack .../63-python3-kineticstools_0.6.1+git20220223.1326a4d+dfsg-6_arm64.deb ... 183s Unpacking python3-kineticstools (0.6.1+git20220223.1326a4d+dfsg-6) ... 183s Selecting previously unselected package kineticstools. 183s Preparing to unpack .../64-kineticstools_0.6.1+git20220223.1326a4d+dfsg-6_all.deb ... 183s Unpacking kineticstools (0.6.1+git20220223.1326a4d+dfsg-6) ... 183s Selecting previously unselected package libjs-jquery. 183s Preparing to unpack .../65-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 183s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 183s Selecting previously unselected package libjs-jquery-metadata. 183s Preparing to unpack .../66-libjs-jquery-metadata_12-4_all.deb ... 183s Unpacking libjs-jquery-metadata (12-4) ... 183s Selecting previously unselected package libjs-jquery-tablesorter. 183s Preparing to unpack .../67-libjs-jquery-tablesorter_1%3a2.31.3+dfsg1-4_all.deb ... 183s Unpacking libjs-jquery-tablesorter (1:2.31.3+dfsg1-4) ... 183s Selecting previously unselected package libjs-jquery-throttle-debounce. 184s Preparing to unpack .../68-libjs-jquery-throttle-debounce_1.1+dfsg.1-2_all.deb ... 184s Unpacking libjs-jquery-throttle-debounce (1.1+dfsg.1-2) ... 184s Selecting previously unselected package python3-coverage. 184s Preparing to unpack .../69-python3-coverage_7.8.2+dfsg1-1_arm64.deb ... 184s Unpacking python3-coverage (7.8.2+dfsg1-1) ... 184s Selecting previously unselected package python3-cram. 184s Preparing to unpack .../70-python3-cram_0.7-6_all.deb ... 184s Unpacking python3-cram (0.7-6) ... 184s Selecting previously unselected package python3-execnet. 184s Preparing to unpack .../71-python3-execnet_2.1.1-1_all.deb ... 184s Unpacking python3-execnet (2.1.1-1) ... 184s Selecting previously unselected package python3-iniconfig. 184s Preparing to unpack .../72-python3-iniconfig_1.1.1-2_all.deb ... 184s Unpacking python3-iniconfig (1.1.1-2) ... 184s Selecting previously unselected package python3-packaging. 184s Preparing to unpack .../73-python3-packaging_25.0-1_all.deb ... 184s Unpacking python3-packaging (25.0-1) ... 184s Selecting previously unselected package python3-pluggy. 184s Preparing to unpack .../74-python3-pluggy_1.5.0-1_all.deb ... 184s Unpacking python3-pluggy (1.5.0-1) ... 184s Selecting previously unselected package python3-pytest. 184s Preparing to unpack .../75-python3-pytest_8.3.5-2_all.deb ... 184s Unpacking python3-pytest (8.3.5-2) ... 184s Selecting previously unselected package libjs-jquery-hotkeys. 184s Preparing to unpack .../76-libjs-jquery-hotkeys_0.2.0-1_all.deb ... 184s Unpacking libjs-jquery-hotkeys (0.2.0-1) ... 184s Selecting previously unselected package libjs-jquery-isonscreen. 184s Preparing to unpack .../77-libjs-jquery-isonscreen_1.2.0-1.1_all.deb ... 184s Unpacking libjs-jquery-isonscreen (1.2.0-1.1) ... 184s Selecting previously unselected package python3-pytest-cov. 184s Preparing to unpack .../78-python3-pytest-cov_5.0.0-1_all.deb ... 184s Unpacking python3-pytest-cov (5.0.0-1) ... 184s Selecting previously unselected package python3-pytest-xdist. 184s Preparing to unpack .../79-python3-pytest-xdist_3.6.1-1_all.deb ... 184s Unpacking python3-pytest-xdist (3.6.1-1) ... 184s Setting up libhtscodecs2:arm64 (1.6.1-2) ... 184s Setting up libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 184s Setting up liblcms2-2:arm64 (2.16-2) ... 184s Setting up python3-iniconfig (1.1.1-2) ... 184s Setting up libpixman-1-0:arm64 (0.44.0-3) ... 184s Setting up libsharpyuv0:arm64 (1.5.0-0.1) ... 184s Setting up liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 184s Setting up libxrender1:arm64 (1:0.9.12-1) ... 184s Setting up libxcb-render0:arm64 (1.17.0-2build1) ... 184s Setting up python3-charset-normalizer (3.4.2-1) ... 185s Setting up x11-common (1:7.7+24ubuntu1) ... 185s Setting up libdeflate0:arm64 (1.23-2) ... 185s Setting up python3-coverage (7.8.2+dfsg1-1) ... 186s Setting up python3-pytz (2025.2-3) ... 186s Setting up libxcb-shm0:arm64 (1.17.0-2build1) ... 186s Setting up kineticstools-data (0.6.1+git20220223.1326a4d+dfsg-6) ... 186s Setting up libjs-jquery-throttle-debounce (1.1+dfsg.1-2) ... 186s Setting up libgomp1:arm64 (15.2.0-5ubuntu1) ... 186s Setting up python3-freetype (2.5.1-1) ... 186s Setting up libjbig0:arm64 (2.1-6.1ubuntu2) ... 186s Setting up libaec0:arm64 (1.1.3-1) ... 186s Setting up python3-tz (2025.2-3) ... 186s Setting up python3-decorator (5.2.1-2) ... 187s Setting up libfontenc1:arm64 (1:1.1.8-1build1) ... 187s Setting up libblas3:arm64 (3.12.1-6build1) ... 187s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 187s Setting up python3-packaging (25.0-1) ... 187s Setting up python3-iso8601 (2.1.0-2) ... 187s Setting up python3-avro (1.12.0+dfsg-1) ... 187s Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ... 187s Setting up libimagequant0:arm64 (2.18.0-1build1) ... 187s Setting up python3-numpy-dev:arm64 (1:2.2.4+ds-1ubuntu1) ... 187s Setting up libjpeg-turbo8:arm64 (2.1.5-4ubuntu2) ... 187s Setting up libgfortran5:arm64 (15.2.0-5ubuntu1) ... 187s Setting up python3-pluggy (1.5.0-1) ... 188s Setting up libwebp7:arm64 (1.5.0-0.1) ... 188s Setting up python3-cram (0.7-6) ... 188s Setting up libhts3t64:arm64 (1.21+ds-1) ... 188s Setting up libopenjp2-7:arm64 (2.5.3-2.1) ... 188s Setting up libharfbuzz0b:arm64 (10.2.0-1) ... 188s Setting up libbigwig0t64:arm64 (0.4.7+dfsg-3.1build2) ... 188s Setting up sgml-base (1.31+nmu1) ... 188s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 188s Setting up libjs-jquery-hotkeys (0.2.0-1) ... 188s Setting up python3-execnet (2.1.1-1) ... 188s Setting up libwebpmux3:arm64 (1.5.0-0.1) ... 188s Setting up libsz2:arm64 (1.1.3-1) ... 188s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 188s Setting up liblapack3:arm64 (3.12.1-6build1) ... 188s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 188s Setting up python3-pysam (0.23.0+ds-1build1) ... 188s Setting up python3-pytest (8.3.5-2) ... 189s Setting up libwebpdemux2:arm64 (1.5.0-0.1) ... 189s Setting up xfonts-utils (1:7.7+7) ... 189s Setting up libjs-jquery-metadata (12-4) ... 189s Setting up libraqm0:arm64 (0.10.3-1) ... 189s Setting up libjs-jquery-isonscreen (1.2.0-1.1) ... 189s Setting up python3-numpy (1:2.2.4+ds-1ubuntu1) ... 193s Setting up python3-pybigwig (0.3.23+dfsg-1build3) ... 193s Setting up libjs-jquery-tablesorter (1:2.31.3+dfsg1-4) ... 193s Setting up libhdf5-310:arm64 (1.14.5+repack-3build1) ... 193s Setting up libtiff6:arm64 (4.7.0-3ubuntu3) ... 193s Setting up xml-core (0.19) ... 193s Setting up libhdf5-hl-310:arm64 (1.14.5+repack-3build1) ... 193s Setting up python3-scipy (1.15.3-1) ... 201s Setting up python3-pytest-xdist (3.6.1-1) ... 202s Setting up python3-pytest-cov (5.0.0-1) ... 202s Setting up fonts-urw-base35 (20200910-8) ... 202s Setting up hdf5-tools (1.14.5+repack-3build1) ... 202s Setting up python3-pil:arm64 (11.3.0-1ubuntu1) ... 203s Setting up python3-pbcommand (2.1.1+git20231020.28d1635-1) ... 203s Setting up fontconfig-config (2.15.0-2.3ubuntu1) ... 204s Setting up libfontconfig1:arm64 (2.15.0-2.3ubuntu1) ... 204s Setting up libcairo2:arm64 (1.18.4-1build1) ... 204s Setting up python3-cairo (1.27.0-2) ... 204s Setting up python3-rlpycairo (0.3.0-3) ... 204s Setting up python3-reportlab (4.4.2-1) ... 206s Processing triggers for libc-bin (2.42-0ubuntu3) ... 206s Processing triggers for man-db (2.13.1-1) ... 208s Processing triggers for sgml-base (1.31+nmu1) ... 208s Setting up w3c-sgml-lib (1.3-3) ... 262s Setting up python3-biopython (1.85+dfsg-4) ... 264s Setting up python3-pbcore (2.1.2+dfsg-11) ... 265s Setting up python3-kineticstools (0.6.1+git20220223.1326a4d+dfsg-6) ... 265s Setting up kineticstools (0.6.1+git20220223.1326a4d+dfsg-6) ... 267s autopkgtest [18:39:38]: test command1: cp -r Makefile test $AUTOPKGTEST_TMP/ && cd $AUTOPKGTEST_TMP && ln -s /usr/share/kineticstools kineticsTools && make -k py-tests 267s autopkgtest [18:39:38]: test command1: [----------------------- 267s # pytest --cov=kineticsTools # does not quite work since we run in test/ dir. 267s cd test/; pytest-3 -s -v -p no:warnings --durations=20 --junitxml=../nosetests.xml test_*.py 268s ============================= test session starts ============================== 268s platform linux -- Python 3.13.7, pytest-8.3.5, pluggy-1.5.0 -- /usr/bin/python3 268s cachedir: .pytest_cache 268s rootdir: /tmp/autopkgtest.sDCQxf/autopkgtest_tmp/test 268s plugins: typeguard-4.4.2, cov-5.0.0, xdist-3.6.1 268s collecting ... /tmp/autopkgtest.sDCQxf/autopkgtest_tmp/test/test_ReferenceUtils.py:17: PytestUnknownMarkWarning: Unknown pytest.mark.internal_data - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html 268s @pytest.mark.internal_data 268s /tmp/autopkgtest.sDCQxf/autopkgtest_tmp/test/test_gather_bigwig.py:50: PytestUnknownMarkWarning: Unknown pytest.mark.pybigwig - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html 268s @pytest.mark.pybigwig 268s /tmp/autopkgtest.sDCQxf/autopkgtest_tmp/test/test_integration.py:29: PytestUnknownMarkWarning: Unknown pytest.mark.internal_data - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html 268s @pytest.mark.internal_data 268s /tmp/autopkgtest.sDCQxf/autopkgtest_tmp/test/test_ipdModel.py:13: PytestUnknownMarkWarning: Unknown pytest.mark.internal_data - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html 268s @pytest.mark.internal_data 268s /tmp/autopkgtest.sDCQxf/autopkgtest_tmp/test/test_outputs.py:21: PytestUnknownMarkWarning: Unknown pytest.mark.internal_data - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html 268s @pytest.mark.internal_data 268s /tmp/autopkgtest.sDCQxf/autopkgtest_tmp/test/test_summarize_modifications.py:12: PytestUnknownMarkWarning: Unknown pytest.mark.internal_data - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html 268s @pytest.mark.internal_data 268s collected 19 items 268s 268s test_ReferenceUtils.py::TestReferenceUtils::test_bam SKIPPED (need a...) 268s test_ReferenceUtils.py::TestReferenceUtils::test_dataset SKIPPED (ne...) 268s test_ReferenceUtils.py::TestReferenceUtils::test_parseReferenceWindow SKIPPED 268s test_ReferenceUtils.py::TestReferenceUtils::test_createReferenceWindows SKIPPED 268s test_ReferenceUtils.py::TestReferenceUtils::test_enumerateChunks SKIPPED 268s test_gather_bigwig.py::TestGatherBigwig::test_gather_bigwig PASSED 269s test_gather_bigwig.py::TestGatherBigwig::test_gather_bigwig_cli PASSED 270s test_integration.py::TestKineticsTools::test_help PASSED 270s test_integration.py::TestKineticsTools::test_ecoli_first_50k SKIPPED 270s test_ipdModel.py::TestIpdModel::test_refLength SKIPPED (need access ...) 270s test_ipdModel.py::TestIpdModel::test_snippetFunc SKIPPED (need acces...) 270s test_ipdModel.py::TestIpdModel::test_getReferenceWindow SKIPPED (nee...) 270s test_loader.py::test_basic PASSED 270s test_loader.py::test_path PASSED 270s test_loader.py::test_path_with_prefixed_chem PASSED 270s test_loader.py::test_getResourcePathSpec PASSED 270s test_outputs.py::TestOutputs::test_csv_output SKIPPED (need access t...) 270s test_outputs.py::TestOutputs::test_bigwig SKIPPED (missing bw_file, ...) 270s test_summarize_modifications.py::TestSummarizeModifications::test_integration SKIPPED 270s 270s -- generated xml file: /tmp/autopkgtest.sDCQxf/autopkgtest_tmp/nosetests.xml --- 270s ============================= slowest 20 durations ============================= 270s 1.49s call test_integration.py::TestKineticsTools::test_help 270s 0.37s call test_gather_bigwig.py::TestGatherBigwig::test_gather_bigwig_cli 270s 0.06s setup test_gather_bigwig.py::TestGatherBigwig::test_gather_bigwig 270s 270s (17 durations < 0.005s hidden. Use -vv to show these durations.) 270s ======================== 7 passed, 12 skipped in 2.37s ========================= 271s autopkgtest [18:39:42]: test command1: -----------------------] 271s autopkgtest [18:39:42]: test command1: - - - - - - - - - - results - - - - - - - - - - 271s command1 PASS 272s autopkgtest [18:39:43]: @@@@@@@@@@@@@@@@@@@@ summary 272s command1 PASS