0s autopkgtest [18:11:30]: starting date and time: 2026-01-22 18:11:30+0000 0s autopkgtest [18:11:30]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [18:11:30]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.d_vhyvii/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults --apt-upgrade iva --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=python3-defaults/3.14.2-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-arm64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@sto01-arm64-3.secgroup --name adt-resolute-arm64-iva-20260122-181130-juju-7f2275-prod-proposed-migration-environment-2-2b364cfa-81ec-443c-a5e3-1452d77c8890 --image adt/ubuntu-resolute-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-autopkgtest-workers-arm64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 4s Creating nova instance adt-resolute-arm64-iva-20260122-181130-juju-7f2275-prod-proposed-migration-environment-2-2b364cfa-81ec-443c-a5e3-1452d77c8890 from image adt/ubuntu-resolute-arm64-server-20260122.img (UUID ed27afc7-5f46-4e8b-ad73-864280a0ddbb)... 64s autopkgtest [18:12:34]: testbed dpkg architecture: arm64 64s autopkgtest [18:12:34]: testbed apt version: 3.1.12 64s autopkgtest [18:12:34]: @@@@@@@@@@@@@@@@@@@@ test bed setup 65s autopkgtest [18:12:35]: testbed release detected to be: None 65s autopkgtest [18:12:35]: updating testbed package index (apt update) 66s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 66s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 66s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 66s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 66s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [2820 B] 66s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [815 kB] 66s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [80.9 kB] 66s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [19.2 kB] 66s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 Packages [103 kB] 66s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 c-n-f Metadata [3316 B] 66s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 Packages [7876 B] 66s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 c-n-f Metadata [120 B] 66s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 Packages [639 kB] 66s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 c-n-f Metadata [16.2 kB] 66s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 Packages [4636 B] 66s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 c-n-f Metadata [460 B] 69s Fetched 1818 kB in 1s (3014 kB/s) 69s Reading package lists... 70s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 70s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 70s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 70s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 71s Reading package lists... 71s Reading package lists... 71s Building dependency tree... 71s Reading state information... 72s Calculating upgrade... 72s The following packages were automatically installed and are no longer required: 72s python3.13 python3.13-minimal 72s Use 'sudo apt autoremove' to remove them. 72s The following NEW packages will be installed: 72s libpython3.14-minimal libpython3.14-stdlib python3.14 python3.14-minimal 72s The following packages will be upgraded: 72s libpython3-stdlib python3 python3-gdbm python3-minimal 72s 4 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. 72s Need to get 6705 kB of archives. 72s After this operation, 26.0 MB of additional disk space will be used. 72s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 libpython3.14-minimal arm64 3.14.2-1 [917 kB] 72s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 python3.14-minimal arm64 3.14.2-1 [2548 kB] 72s Get:3 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 python3-gdbm arm64 3.14.2-1 [11.1 kB] 72s Get:4 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 python3-minimal arm64 3.14.2-1 [28.2 kB] 72s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 python3 arm64 3.14.2-1 [22.9 kB] 72s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 libpython3.14-stdlib arm64 3.14.2-1 [2351 kB] 72s Get:7 http://ftpmaster.internal/ubuntu resolute/main arm64 python3.14 arm64 3.14.2-1 [816 kB] 72s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 libpython3-stdlib arm64 3.14.2-1 [10.9 kB] 73s dpkg-preconfigure: unable to re-open stdin: No such file or directory 73s Fetched 6705 kB in 0s (14.9 MB/s) 73s Selecting previously unselected package libpython3.14-minimal:arm64. 73s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 135223 files and directories currently installed.) 73s Preparing to unpack .../libpython3.14-minimal_3.14.2-1_arm64.deb ... 73s Unpacking libpython3.14-minimal:arm64 (3.14.2-1) ... 73s Selecting previously unselected package python3.14-minimal. 73s Preparing to unpack .../python3.14-minimal_3.14.2-1_arm64.deb ... 73s Unpacking python3.14-minimal (3.14.2-1) ... 73s Preparing to unpack .../python3-gdbm_3.14.2-1_arm64.deb ... 73s Unpacking python3-gdbm (3.14.2-1) over (3.13.9-1) ... 73s Setting up libpython3.14-minimal:arm64 (3.14.2-1) ... 73s Setting up python3.14-minimal (3.14.2-1) ... 75s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 135565 files and directories currently installed.) 75s Preparing to unpack .../python3-minimal_3.14.2-1_arm64.deb ... 75s Unpacking python3-minimal (3.14.2-1) over (3.13.7-1) ... 75s Setting up python3-minimal (3.14.2-1) ... 75s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 135565 files and directories currently installed.) 75s Preparing to unpack .../python3_3.14.2-1_arm64.deb ... 75s running python pre-rtupdate hooks for python3.14... 75s Unpacking python3 (3.14.2-1) over (3.13.7-1) ... 75s Selecting previously unselected package libpython3.14-stdlib:arm64. 75s Preparing to unpack .../libpython3.14-stdlib_3.14.2-1_arm64.deb ... 75s Unpacking libpython3.14-stdlib:arm64 (3.14.2-1) ... 75s Selecting previously unselected package python3.14. 75s Preparing to unpack .../python3.14_3.14.2-1_arm64.deb ... 75s Unpacking python3.14 (3.14.2-1) ... 75s Preparing to unpack .../libpython3-stdlib_3.14.2-1_arm64.deb ... 75s Unpacking libpython3-stdlib:arm64 (3.14.2-1) over (3.13.7-1) ... 76s Setting up libpython3.14-stdlib:arm64 (3.14.2-1) ... 76s Setting up python3.14 (3.14.2-1) ... 77s Setting up libpython3-stdlib:arm64 (3.14.2-1) ... 77s Setting up python3-gdbm (3.14.2-1) ... 77s Setting up python3 (3.14.2-1) ... 77s running python rtupdate hooks for python3.14... 77s running python post-rtupdate hooks for python3.14... 77s Processing triggers for man-db (2.13.1-1) ... 78s Processing triggers for systemd (259-1ubuntu2) ... 78s autopkgtest [18:12:48]: upgrading testbed (apt dist-upgrade and autopurge) 78s Reading package lists... 78s Building dependency tree... 78s Reading state information... 78s Calculating upgrade... 79s The following packages were automatically installed and are no longer required: 79s python3.13 python3.13-minimal 79s Use 'sudo apt autoremove' to remove them. 79s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 79s Reading package lists... 79s Building dependency tree... 79s Reading state information... 79s Solving dependencies... 80s The following packages will be REMOVED: 80s python3.13* python3.13-minimal* 80s 0 upgraded, 0 newly installed, 2 to remove and 0 not upgraded. 80s After this operation, 7766 kB disk space will be freed. 80s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 135995 files and directories currently installed.) 80s Removing python3.13 (3.13.11-1) ... 80s Removing python3.13-minimal (3.13.11-1) ... 81s Processing triggers for man-db (2.13.1-1) ... 82s Processing triggers for systemd (259-1ubuntu2) ... 82s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 135968 files and directories currently installed.) 82s Purging configuration files for python3.13-minimal (3.13.11-1) ... 85s autopkgtest [18:12:55]: testbed running kernel: Linux 6.18.0-9-generic #9-Ubuntu SMP PREEMPT_DYNAMIC Mon Jan 12 16:41:39 UTC 2026 85s autopkgtest [18:12:55]: @@@@@@@@@@@@@@@@@@@@ apt-source iva 87s Get:1 http://ftpmaster.internal/ubuntu resolute/universe iva 1.0.11+ds-6 (dsc) [2406 B] 87s Get:2 http://ftpmaster.internal/ubuntu resolute/universe iva 1.0.11+ds-6 (tar) [8681 kB] 87s Get:3 http://ftpmaster.internal/ubuntu resolute/universe iva 1.0.11+ds-6 (diff) [7228 B] 87s gpgv: Signature made Wed Dec 4 21:04:58 2024 UTC 87s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 87s gpgv: issuer "emollier@debian.org" 87s gpgv: Can't check signature: No public key 87s dpkg-source: warning: cannot verify inline signature for ./iva_1.0.11+ds-6.dsc: no acceptable signature found 87s autopkgtest [18:12:57]: testing package iva version 1.0.11+ds-6 87s autopkgtest [18:12:57]: build not needed 88s autopkgtest [18:12:58]: test test-example: preparing testbed 88s Reading package lists... 88s Building dependency tree... 88s Reading state information... 88s Solving dependencies... 89s The following NEW packages will be installed: 89s adwaita-icon-theme at-spi2-common ca-certificates-java 89s dconf-gsettings-backend dconf-service default-jre default-jre-headless 89s fastaq fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 89s gtk-update-icon-cache hicolor-icon-theme iva java-common kmc libasound2-data 89s libasound2t64 libatk-bridge2.0-0t64 libatk1.0-0t64 libatspi2.0-0t64 89s libavahi-client3 libavahi-common-data libavahi-common3 libbambamc0 libblas3 89s libcairo-gobject2 libcairo2 libcolord2 libcups2t64 libdatrie1 libdconf1 89s libdeflate0 libepoxy0 libfontconfig1 libgbm1 libgdk-pixbuf-2.0-0 89s libgdk-pixbuf2.0-common libgfortran5 libgif7 libgl1 libgl1-mesa-dri 89s libglvnd0 libglx-mesa0 libglx0 libgraphite2-3 libgtk-3-0t64 libgtk-3-common 89s libharfbuzz0b libhts3t64 libhtscodecs2 libjbig0 libjbzip2-java 89s libjpeg-turbo8 libjpeg8 liblapack3 liblcms2-2 liblerc4 libpango-1.0-0 89s libpangocairo-1.0-0 libpangoft2-1.0-0 libpcsclite1 libpixman-1-0 89s libsharpyuv0 libthai-data libthai0 libtiff6 libvulkan1 libwayland-client0 89s libwayland-cursor0 libwayland-egl1 libwebp7 libx11-xcb1 libxcb-dri3-0 89s libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-render0 libxcb-shm0 89s libxcb-sync1 libxcb-xfixes0 libxcomposite1 libxcursor1 libxdamage1 89s libxfixes3 libxi6 libxinerama1 libxrandr2 libxrender1 libxshmfence1 libxtst6 89s libxxf86vm1 mesa-libgallium mummer openjdk-21-jre openjdk-21-jre-headless 89s python3-networkx python3-numpy python3-numpy-dev python3-pysam samtools 89s smalt trimmomatic x11-common 89s 0 upgraded, 105 newly installed, 0 to remove and 0 not upgraded. 89s Need to get 107 MB of archives. 89s After this operation, 504 MB of additional disk space will be used. 89s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-numpy-dev arm64 1:2.3.5+ds-3 [366 kB] 89s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 libblas3 arm64 3.12.1-7ubuntu1 [181 kB] 89s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 libgfortran5 arm64 15.2.0-11ubuntu1 [450 kB] 89s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 liblapack3 arm64 3.12.1-7ubuntu1 [2299 kB] 90s Get:5 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-numpy arm64 1:2.3.5+ds-3 [4569 kB] 90s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 libgdk-pixbuf2.0-common all 2.44.4+dfsg-1 [8584 B] 90s Get:7 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg-turbo8 arm64 2.1.5-4ubuntu2 [165 kB] 90s Get:8 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 90s Get:9 http://ftpmaster.internal/ubuntu resolute/main arm64 libdeflate0 arm64 1.23-2 [46.4 kB] 90s Get:10 http://ftpmaster.internal/ubuntu resolute/main arm64 libjbig0 arm64 2.1-6.1ubuntu3 [29.2 kB] 90s Get:11 http://ftpmaster.internal/ubuntu resolute/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu2 [174 kB] 90s Get:12 http://ftpmaster.internal/ubuntu resolute/main arm64 libsharpyuv0 arm64 1.5.0-0.1build1 [16.7 kB] 90s Get:13 http://ftpmaster.internal/ubuntu resolute/main arm64 libwebp7 arm64 1.5.0-0.1build1 [205 kB] 90s Get:14 http://ftpmaster.internal/ubuntu resolute/main arm64 libtiff6 arm64 4.7.0-3ubuntu3 [196 kB] 90s Get:15 http://ftpmaster.internal/ubuntu resolute/main arm64 libgdk-pixbuf-2.0-0 arm64 2.44.4+dfsg-1 [149 kB] 90s Get:16 http://ftpmaster.internal/ubuntu resolute/main arm64 gtk-update-icon-cache arm64 4.20.3+ds-3 [54.7 kB] 90s Get:17 http://ftpmaster.internal/ubuntu resolute/main arm64 hicolor-icon-theme all 0.18-2build1 [13.2 kB] 90s Get:18 http://ftpmaster.internal/ubuntu resolute/main arm64 adwaita-icon-theme all 49.0-1 [581 kB] 90s Get:19 http://ftpmaster.internal/ubuntu resolute/main arm64 at-spi2-common all 2.59.0-1 [9774 B] 90s Get:20 http://ftpmaster.internal/ubuntu resolute/main arm64 ca-certificates-java all 20240118build1 [11.7 kB] 90s Get:21 http://ftpmaster.internal/ubuntu resolute/main arm64 libdconf1 arm64 0.49.0-4 [40.9 kB] 90s Get:22 http://ftpmaster.internal/ubuntu resolute/main arm64 dconf-service arm64 0.49.0-4 [27.2 kB] 90s Get:23 http://ftpmaster.internal/ubuntu resolute/main arm64 dconf-gsettings-backend arm64 0.49.0-4 [22.0 kB] 90s Get:24 http://ftpmaster.internal/ubuntu resolute/main arm64 java-common all 0.76build1 [6956 B] 90s Get:25 http://ftpmaster.internal/ubuntu resolute/main arm64 liblcms2-2 arm64 2.17-1 [170 kB] 90s Get:26 http://ftpmaster.internal/ubuntu resolute/main arm64 libpcsclite1 arm64 2.4.0-2 [24.4 kB] 90s Get:27 http://ftpmaster.internal/ubuntu resolute/main arm64 openjdk-21-jre-headless arm64 21.0.10~6ea-1 [45.9 MB] 91s Get:28 http://ftpmaster.internal/ubuntu resolute/main arm64 default-jre-headless arm64 2:1.21-76build1 [3268 B] 91s Get:29 http://ftpmaster.internal/ubuntu resolute/main arm64 libatk1.0-0t64 arm64 2.59.0-1 [55.9 kB] 91s Get:30 http://ftpmaster.internal/ubuntu resolute/main arm64 libxi6 arm64 2:1.8.2-2 [32.4 kB] 91s Get:31 http://ftpmaster.internal/ubuntu resolute/main arm64 libatspi2.0-0t64 arm64 2.59.0-1 [85.4 kB] 91s Get:32 http://ftpmaster.internal/ubuntu resolute/main arm64 libatk-bridge2.0-0t64 arm64 2.59.0-1 [66.9 kB] 91s Get:33 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-mono all 2.37-8build1 [502 kB] 91s Get:34 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-core all 2.37-8build1 [834 kB] 91s Get:35 http://ftpmaster.internal/ubuntu resolute/main arm64 fontconfig-config arm64 2.15.0-2.4ubuntu1 [38.2 kB] 91s Get:36 http://ftpmaster.internal/ubuntu resolute/main arm64 libfontconfig1 arm64 2.15.0-2.4ubuntu1 [143 kB] 91s Get:37 http://ftpmaster.internal/ubuntu resolute/main arm64 libpixman-1-0 arm64 0.46.4-1 [204 kB] 91s Get:38 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-render0 arm64 1.17.0-2build1 [18.1 kB] 91s Get:39 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-shm0 arm64 1.17.0-2build1 [6234 B] 91s Get:40 http://ftpmaster.internal/ubuntu resolute/main arm64 libxrender1 arm64 1:0.9.12-1 [19.5 kB] 91s Get:41 http://ftpmaster.internal/ubuntu resolute/main arm64 libcairo2 arm64 1.18.4-3 [556 kB] 91s Get:42 http://ftpmaster.internal/ubuntu resolute/main arm64 libcairo-gobject2 arm64 1.18.4-3 [127 kB] 91s Get:43 http://ftpmaster.internal/ubuntu resolute/main arm64 libcolord2 arm64 1.4.8-2 [147 kB] 91s Get:44 http://ftpmaster.internal/ubuntu resolute/main arm64 libavahi-common-data arm64 0.8-17ubuntu1 [31.3 kB] 91s Get:45 http://ftpmaster.internal/ubuntu resolute/main arm64 libavahi-common3 arm64 0.8-17ubuntu1 [22.6 kB] 91s Get:46 http://ftpmaster.internal/ubuntu resolute/main arm64 libavahi-client3 arm64 0.8-17ubuntu1 [26.7 kB] 91s Get:47 http://ftpmaster.internal/ubuntu resolute/main arm64 libcups2t64 arm64 2.4.16-1ubuntu1 [271 kB] 91s Get:48 http://ftpmaster.internal/ubuntu resolute/main arm64 libepoxy0 arm64 1.5.10-2build1 [238 kB] 91s Get:49 http://ftpmaster.internal/ubuntu resolute/main arm64 libgraphite2-3 arm64 1.3.14-11ubuntu1 [72.1 kB] 91s Get:50 http://ftpmaster.internal/ubuntu resolute/main arm64 libharfbuzz0b arm64 12.3.0-4 [518 kB] 91s Get:51 http://ftpmaster.internal/ubuntu resolute/main arm64 fontconfig arm64 2.15.0-2.4ubuntu1 [191 kB] 91s Get:52 http://ftpmaster.internal/ubuntu resolute/main arm64 libthai-data all 0.1.30-1 [155 kB] 91s Get:53 http://ftpmaster.internal/ubuntu resolute/main arm64 libdatrie1 arm64 0.2.14-1 [19.6 kB] 91s Get:54 http://ftpmaster.internal/ubuntu resolute/main arm64 libthai0 arm64 0.1.30-1 [18.3 kB] 91s Get:55 http://ftpmaster.internal/ubuntu resolute/main arm64 libpango-1.0-0 arm64 1.56.4-1 [237 kB] 91s Get:56 http://ftpmaster.internal/ubuntu resolute/main arm64 libpangoft2-1.0-0 arm64 1.56.4-1 [51.4 kB] 91s Get:57 http://ftpmaster.internal/ubuntu resolute/main arm64 libpangocairo-1.0-0 arm64 1.56.4-1 [27.9 kB] 91s Get:58 http://ftpmaster.internal/ubuntu resolute/main arm64 libwayland-client0 arm64 1.24.0-2 [27.6 kB] 91s Get:59 http://ftpmaster.internal/ubuntu resolute/main arm64 libwayland-cursor0 arm64 1.24.0-2 [10.6 kB] 91s Get:60 http://ftpmaster.internal/ubuntu resolute/main arm64 libwayland-egl1 arm64 1.24.0-2 [6172 B] 91s Get:61 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcomposite1 arm64 1:0.4.6-1build1 [6728 B] 91s Get:62 http://ftpmaster.internal/ubuntu resolute/main arm64 libxfixes3 arm64 1:6.0.0-2build2 [11.4 kB] 91s Get:63 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcursor1 arm64 1:1.2.3-1build1 [22.0 kB] 91s Get:64 http://ftpmaster.internal/ubuntu resolute/main arm64 libxdamage1 arm64 1:1.1.6-1build2 [6456 B] 91s Get:65 http://ftpmaster.internal/ubuntu resolute/main arm64 libxinerama1 arm64 2:1.1.4-3build2 [6486 B] 91s Get:66 http://ftpmaster.internal/ubuntu resolute/main arm64 libxrandr2 arm64 2:1.5.4-1build1 [19.1 kB] 91s Get:67 http://ftpmaster.internal/ubuntu resolute/main arm64 libgtk-3-common all 3.24.50-1ubuntu2 [1425 kB] 91s Get:68 http://ftpmaster.internal/ubuntu resolute/main arm64 libgtk-3-0t64 arm64 3.24.50-1ubuntu2 [3229 kB] 91s Get:69 http://ftpmaster.internal/ubuntu resolute/main arm64 libglvnd0 arm64 1.7.0-3 [57.9 kB] 91s Get:70 http://ftpmaster.internal/ubuntu resolute/main arm64 libx11-xcb1 arm64 2:1.8.12-1build1 [8216 B] 91s Get:71 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-dri3-0 arm64 1.17.0-2build1 [8120 B] 91s Get:72 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-glx0 arm64 1.17.0-2build1 [27.8 kB] 91s Get:73 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-present0 arm64 1.17.0-2build1 [6560 B] 91s Get:74 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-xfixes0 arm64 1.17.0-2build1 [11.4 kB] 91s Get:75 http://ftpmaster.internal/ubuntu resolute/main arm64 libxxf86vm1 arm64 1:1.1.4-2 [10.2 kB] 91s Get:76 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-randr0 arm64 1.17.0-2build1 [20.2 kB] 91s Get:77 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-sync1 arm64 1.17.0-2build1 [10.4 kB] 91s Get:78 http://ftpmaster.internal/ubuntu resolute/main arm64 libxshmfence1 arm64 1.3.3-1 [5378 B] 91s Get:79 http://ftpmaster.internal/ubuntu resolute/main arm64 mesa-libgallium arm64 25.2.8-2ubuntu1 [12.1 MB] 91s Get:80 http://ftpmaster.internal/ubuntu resolute/main arm64 libgbm1 arm64 25.2.8-2ubuntu1 [34.5 kB] 91s Get:81 http://ftpmaster.internal/ubuntu resolute/main arm64 libvulkan1 arm64 1.4.335.0-1 [171 kB] 91s Get:82 http://ftpmaster.internal/ubuntu resolute/main arm64 libgl1-mesa-dri arm64 25.2.8-2ubuntu1 [35.1 kB] 91s Get:83 http://ftpmaster.internal/ubuntu resolute/main arm64 libglx-mesa0 arm64 25.2.8-2ubuntu1 [110 kB] 91s Get:84 http://ftpmaster.internal/ubuntu resolute/main arm64 libglx0 arm64 1.7.0-3 [33.0 kB] 91s Get:85 http://ftpmaster.internal/ubuntu resolute/main arm64 libgl1 arm64 1.7.0-3 [102 kB] 91s Get:86 http://ftpmaster.internal/ubuntu resolute/main arm64 libasound2-data all 1.2.15.1-1 [21.2 kB] 91s Get:87 http://ftpmaster.internal/ubuntu resolute/main arm64 libasound2t64 arm64 1.2.15.1-1 [401 kB] 91s Get:88 http://ftpmaster.internal/ubuntu resolute/main arm64 libgif7 arm64 5.2.2-1ubuntu3 [35.8 kB] 91s Get:89 http://ftpmaster.internal/ubuntu resolute/main arm64 x11-common all 1:7.7+24ubuntu1 [22.4 kB] 91s Get:90 http://ftpmaster.internal/ubuntu resolute/main arm64 libxtst6 arm64 2:1.2.5-1build1 [13.2 kB] 91s Get:91 http://ftpmaster.internal/ubuntu resolute/main arm64 openjdk-21-jre arm64 21.0.10~6ea-1 [224 kB] 91s Get:92 http://ftpmaster.internal/ubuntu resolute/main arm64 default-jre arm64 2:1.21-76build1 [922 B] 91s Get:93 http://ftpmaster.internal/ubuntu resolute/universe arm64 libhtscodecs2 arm64 1.6.1-2 [82.7 kB] 91s Get:94 http://ftpmaster.internal/ubuntu resolute/universe arm64 libhts3t64 arm64 1.22.1+ds2-1 [442 kB] 91s Get:95 http://ftpmaster.internal/ubuntu resolute/universe arm64 samtools arm64 1.22.1-1 [631 kB] 91s Get:96 http://ftpmaster.internal/ubuntu resolute/universe arm64 fastaq all 3.17.0-9build1 [48.4 kB] 91s Get:97 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-networkx all 3.2.1-4ubuntu2 [11.8 MB] 91s Get:98 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pysam arm64 0.23.3+ds-2 [4348 kB] 92s Get:99 http://ftpmaster.internal/ubuntu resolute/universe arm64 kmc arm64 3.2.4+dfsg-1build1 [1026 kB] 92s Get:100 http://ftpmaster.internal/ubuntu resolute/universe arm64 mummer arm64 3.23+dfsg-8build1 [678 kB] 92s Get:101 http://ftpmaster.internal/ubuntu resolute/universe arm64 libbambamc0 arm64 0.0.50-7 [39.3 kB] 92s Get:102 http://ftpmaster.internal/ubuntu resolute/universe arm64 smalt arm64 0.7.6-13 [95.2 kB] 92s Get:103 http://ftpmaster.internal/ubuntu resolute/universe arm64 iva arm64 1.0.11+ds-6 [8583 kB] 92s Get:104 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjbzip2-java all 0.9.1-8 [42.4 kB] 92s Get:105 http://ftpmaster.internal/ubuntu resolute/universe arm64 trimmomatic all 0.39+dfsg-2build1 [754 kB] 93s Fetched 107 MB in 3s (33.4 MB/s) 93s Selecting previously unselected package python3-numpy-dev:arm64. 93s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 135970 files and directories currently installed.) 93s Preparing to unpack .../000-python3-numpy-dev_1%3a2.3.5+ds-3_arm64.deb ... 93s Unpacking python3-numpy-dev:arm64 (1:2.3.5+ds-3) ... 93s Selecting previously unselected package libblas3:arm64. 93s Preparing to unpack .../001-libblas3_3.12.1-7ubuntu1_arm64.deb ... 93s Unpacking libblas3:arm64 (3.12.1-7ubuntu1) ... 93s Selecting previously unselected package libgfortran5:arm64. 93s Preparing to unpack .../002-libgfortran5_15.2.0-11ubuntu1_arm64.deb ... 93s Unpacking libgfortran5:arm64 (15.2.0-11ubuntu1) ... 93s Selecting previously unselected package liblapack3:arm64. 93s Preparing to unpack .../003-liblapack3_3.12.1-7ubuntu1_arm64.deb ... 93s Unpacking liblapack3:arm64 (3.12.1-7ubuntu1) ... 93s Selecting previously unselected package python3-numpy. 93s Preparing to unpack .../004-python3-numpy_1%3a2.3.5+ds-3_arm64.deb ... 93s Unpacking python3-numpy (1:2.3.5+ds-3) ... 93s Selecting previously unselected package libgdk-pixbuf2.0-common. 93s Preparing to unpack .../005-libgdk-pixbuf2.0-common_2.44.4+dfsg-1_all.deb ... 93s Unpacking libgdk-pixbuf2.0-common (2.44.4+dfsg-1) ... 93s Selecting previously unselected package libjpeg-turbo8:arm64. 93s Preparing to unpack .../006-libjpeg-turbo8_2.1.5-4ubuntu2_arm64.deb ... 93s Unpacking libjpeg-turbo8:arm64 (2.1.5-4ubuntu2) ... 93s Selecting previously unselected package libjpeg8:arm64. 93s Preparing to unpack .../007-libjpeg8_8c-2ubuntu11_arm64.deb ... 93s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 93s Selecting previously unselected package libdeflate0:arm64. 93s Preparing to unpack .../008-libdeflate0_1.23-2_arm64.deb ... 93s Unpacking libdeflate0:arm64 (1.23-2) ... 93s Selecting previously unselected package libjbig0:arm64. 93s Preparing to unpack .../009-libjbig0_2.1-6.1ubuntu3_arm64.deb ... 93s Unpacking libjbig0:arm64 (2.1-6.1ubuntu3) ... 93s Selecting previously unselected package liblerc4:arm64. 93s Preparing to unpack .../010-liblerc4_4.0.0+ds-5ubuntu2_arm64.deb ... 93s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu2) ... 93s Selecting previously unselected package libsharpyuv0:arm64. 93s Preparing to unpack .../011-libsharpyuv0_1.5.0-0.1build1_arm64.deb ... 93s Unpacking libsharpyuv0:arm64 (1.5.0-0.1build1) ... 93s Selecting previously unselected package libwebp7:arm64. 93s Preparing to unpack .../012-libwebp7_1.5.0-0.1build1_arm64.deb ... 93s Unpacking libwebp7:arm64 (1.5.0-0.1build1) ... 93s Selecting previously unselected package libtiff6:arm64. 93s Preparing to unpack .../013-libtiff6_4.7.0-3ubuntu3_arm64.deb ... 93s Unpacking libtiff6:arm64 (4.7.0-3ubuntu3) ... 93s Selecting previously unselected package libgdk-pixbuf-2.0-0:arm64. 93s Preparing to unpack .../014-libgdk-pixbuf-2.0-0_2.44.4+dfsg-1_arm64.deb ... 93s Unpacking libgdk-pixbuf-2.0-0:arm64 (2.44.4+dfsg-1) ... 93s Selecting previously unselected package gtk-update-icon-cache. 94s Preparing to unpack .../015-gtk-update-icon-cache_4.20.3+ds-3_arm64.deb ... 94s No diversion 'diversion of /usr/sbin/update-icon-caches to /usr/sbin/update-icon-caches.gtk2 by libgtk-3-bin', none removed. 94s No diversion 'diversion of /usr/share/man/man8/update-icon-caches.8.gz to /usr/share/man/man8/update-icon-caches.gtk2.8.gz by libgtk-3-bin', none removed. 94s Unpacking gtk-update-icon-cache (4.20.3+ds-3) ... 94s Selecting previously unselected package hicolor-icon-theme. 94s Preparing to unpack .../016-hicolor-icon-theme_0.18-2build1_all.deb ... 94s Unpacking hicolor-icon-theme (0.18-2build1) ... 94s Selecting previously unselected package adwaita-icon-theme. 94s Preparing to unpack .../017-adwaita-icon-theme_49.0-1_all.deb ... 94s Unpacking adwaita-icon-theme (49.0-1) ... 94s Selecting previously unselected package at-spi2-common. 94s Preparing to unpack .../018-at-spi2-common_2.59.0-1_all.deb ... 94s Unpacking at-spi2-common (2.59.0-1) ... 94s Selecting previously unselected package ca-certificates-java. 94s Preparing to unpack .../019-ca-certificates-java_20240118build1_all.deb ... 94s Unpacking ca-certificates-java (20240118build1) ... 94s Selecting previously unselected package libdconf1:arm64. 94s Preparing to unpack .../020-libdconf1_0.49.0-4_arm64.deb ... 94s Unpacking libdconf1:arm64 (0.49.0-4) ... 94s Selecting previously unselected package dconf-service. 94s Preparing to unpack .../021-dconf-service_0.49.0-4_arm64.deb ... 94s Unpacking dconf-service (0.49.0-4) ... 94s Selecting previously unselected package dconf-gsettings-backend:arm64. 94s Preparing to unpack .../022-dconf-gsettings-backend_0.49.0-4_arm64.deb ... 94s Unpacking dconf-gsettings-backend:arm64 (0.49.0-4) ... 94s Selecting previously unselected package java-common. 94s Preparing to unpack .../023-java-common_0.76build1_all.deb ... 94s Unpacking java-common (0.76build1) ... 94s Selecting previously unselected package liblcms2-2:arm64. 94s Preparing to unpack .../024-liblcms2-2_2.17-1_arm64.deb ... 94s Unpacking liblcms2-2:arm64 (2.17-1) ... 94s Selecting previously unselected package libpcsclite1:arm64. 94s Preparing to unpack .../025-libpcsclite1_2.4.0-2_arm64.deb ... 94s Unpacking libpcsclite1:arm64 (2.4.0-2) ... 94s Selecting previously unselected package openjdk-21-jre-headless:arm64. 94s Preparing to unpack .../026-openjdk-21-jre-headless_21.0.10~6ea-1_arm64.deb ... 94s Unpacking openjdk-21-jre-headless:arm64 (21.0.10~6ea-1) ... 95s Selecting previously unselected package default-jre-headless. 95s Preparing to unpack .../027-default-jre-headless_2%3a1.21-76build1_arm64.deb ... 95s Unpacking default-jre-headless (2:1.21-76build1) ... 95s Selecting previously unselected package libatk1.0-0t64:arm64. 95s Preparing to unpack .../028-libatk1.0-0t64_2.59.0-1_arm64.deb ... 95s Unpacking libatk1.0-0t64:arm64 (2.59.0-1) ... 95s Selecting previously unselected package libxi6:arm64. 95s Preparing to unpack .../029-libxi6_2%3a1.8.2-2_arm64.deb ... 95s Unpacking libxi6:arm64 (2:1.8.2-2) ... 95s Selecting previously unselected package libatspi2.0-0t64:arm64. 95s Preparing to unpack .../030-libatspi2.0-0t64_2.59.0-1_arm64.deb ... 95s Unpacking libatspi2.0-0t64:arm64 (2.59.0-1) ... 95s Selecting previously unselected package libatk-bridge2.0-0t64:arm64. 95s Preparing to unpack .../031-libatk-bridge2.0-0t64_2.59.0-1_arm64.deb ... 95s Unpacking libatk-bridge2.0-0t64:arm64 (2.59.0-1) ... 95s Selecting previously unselected package fonts-dejavu-mono. 95s Preparing to unpack .../032-fonts-dejavu-mono_2.37-8build1_all.deb ... 95s Unpacking fonts-dejavu-mono (2.37-8build1) ... 95s Selecting previously unselected package fonts-dejavu-core. 96s Preparing to unpack .../033-fonts-dejavu-core_2.37-8build1_all.deb ... 96s Unpacking fonts-dejavu-core (2.37-8build1) ... 96s Selecting previously unselected package fontconfig-config. 96s Preparing to unpack .../034-fontconfig-config_2.15.0-2.4ubuntu1_arm64.deb ... 96s Unpacking fontconfig-config (2.15.0-2.4ubuntu1) ... 96s Selecting previously unselected package libfontconfig1:arm64. 96s Preparing to unpack .../035-libfontconfig1_2.15.0-2.4ubuntu1_arm64.deb ... 96s Unpacking libfontconfig1:arm64 (2.15.0-2.4ubuntu1) ... 96s Selecting previously unselected package libpixman-1-0:arm64. 96s Preparing to unpack .../036-libpixman-1-0_0.46.4-1_arm64.deb ... 96s Unpacking libpixman-1-0:arm64 (0.46.4-1) ... 96s Selecting previously unselected package libxcb-render0:arm64. 96s Preparing to unpack .../037-libxcb-render0_1.17.0-2build1_arm64.deb ... 96s Unpacking libxcb-render0:arm64 (1.17.0-2build1) ... 96s Selecting previously unselected package libxcb-shm0:arm64. 96s Preparing to unpack .../038-libxcb-shm0_1.17.0-2build1_arm64.deb ... 96s Unpacking libxcb-shm0:arm64 (1.17.0-2build1) ... 96s Selecting previously unselected package libxrender1:arm64. 96s Preparing to unpack .../039-libxrender1_1%3a0.9.12-1_arm64.deb ... 96s Unpacking libxrender1:arm64 (1:0.9.12-1) ... 96s Selecting previously unselected package libcairo2:arm64. 96s Preparing to unpack .../040-libcairo2_1.18.4-3_arm64.deb ... 96s Unpacking libcairo2:arm64 (1.18.4-3) ... 96s Selecting previously unselected package libcairo-gobject2:arm64. 96s Preparing to unpack .../041-libcairo-gobject2_1.18.4-3_arm64.deb ... 96s Unpacking libcairo-gobject2:arm64 (1.18.4-3) ... 96s Selecting previously unselected package libcolord2:arm64. 96s Preparing to unpack .../042-libcolord2_1.4.8-2_arm64.deb ... 96s Unpacking libcolord2:arm64 (1.4.8-2) ... 96s Selecting previously unselected package libavahi-common-data:arm64. 96s Preparing to unpack .../043-libavahi-common-data_0.8-17ubuntu1_arm64.deb ... 96s Unpacking libavahi-common-data:arm64 (0.8-17ubuntu1) ... 96s Selecting previously unselected package libavahi-common3:arm64. 96s Preparing to unpack .../044-libavahi-common3_0.8-17ubuntu1_arm64.deb ... 96s Unpacking libavahi-common3:arm64 (0.8-17ubuntu1) ... 96s Selecting previously unselected package libavahi-client3:arm64. 96s Preparing to unpack .../045-libavahi-client3_0.8-17ubuntu1_arm64.deb ... 96s Unpacking libavahi-client3:arm64 (0.8-17ubuntu1) ... 96s Selecting previously unselected package libcups2t64:arm64. 96s Preparing to unpack .../046-libcups2t64_2.4.16-1ubuntu1_arm64.deb ... 96s Unpacking libcups2t64:arm64 (2.4.16-1ubuntu1) ... 96s Selecting previously unselected package libepoxy0:arm64. 96s Preparing to unpack .../047-libepoxy0_1.5.10-2build1_arm64.deb ... 96s Unpacking libepoxy0:arm64 (1.5.10-2build1) ... 97s Selecting previously unselected package libgraphite2-3:arm64. 97s Preparing to unpack .../048-libgraphite2-3_1.3.14-11ubuntu1_arm64.deb ... 97s Unpacking libgraphite2-3:arm64 (1.3.14-11ubuntu1) ... 97s Selecting previously unselected package libharfbuzz0b:arm64. 97s Preparing to unpack .../049-libharfbuzz0b_12.3.0-4_arm64.deb ... 97s Unpacking libharfbuzz0b:arm64 (12.3.0-4) ... 97s Selecting previously unselected package fontconfig. 97s Preparing to unpack .../050-fontconfig_2.15.0-2.4ubuntu1_arm64.deb ... 97s Unpacking fontconfig (2.15.0-2.4ubuntu1) ... 97s Selecting previously unselected package libthai-data. 97s Preparing to unpack .../051-libthai-data_0.1.30-1_all.deb ... 97s Unpacking libthai-data (0.1.30-1) ... 97s Selecting previously unselected package libdatrie1:arm64. 97s Preparing to unpack .../052-libdatrie1_0.2.14-1_arm64.deb ... 97s Unpacking libdatrie1:arm64 (0.2.14-1) ... 97s Selecting previously unselected package libthai0:arm64. 97s Preparing to unpack .../053-libthai0_0.1.30-1_arm64.deb ... 97s Unpacking libthai0:arm64 (0.1.30-1) ... 97s Selecting previously unselected package libpango-1.0-0:arm64. 97s Preparing to unpack .../054-libpango-1.0-0_1.56.4-1_arm64.deb ... 97s Unpacking libpango-1.0-0:arm64 (1.56.4-1) ... 97s Selecting previously unselected package libpangoft2-1.0-0:arm64. 97s Preparing to unpack .../055-libpangoft2-1.0-0_1.56.4-1_arm64.deb ... 97s Unpacking libpangoft2-1.0-0:arm64 (1.56.4-1) ... 97s Selecting previously unselected package libpangocairo-1.0-0:arm64. 97s Preparing to unpack .../056-libpangocairo-1.0-0_1.56.4-1_arm64.deb ... 97s Unpacking libpangocairo-1.0-0:arm64 (1.56.4-1) ... 97s Selecting previously unselected package libwayland-client0:arm64. 97s Preparing to unpack .../057-libwayland-client0_1.24.0-2_arm64.deb ... 97s Unpacking libwayland-client0:arm64 (1.24.0-2) ... 97s Selecting previously unselected package libwayland-cursor0:arm64. 97s Preparing to unpack .../058-libwayland-cursor0_1.24.0-2_arm64.deb ... 97s Unpacking libwayland-cursor0:arm64 (1.24.0-2) ... 97s Selecting previously unselected package libwayland-egl1:arm64. 97s Preparing to unpack .../059-libwayland-egl1_1.24.0-2_arm64.deb ... 97s Unpacking libwayland-egl1:arm64 (1.24.0-2) ... 97s Selecting previously unselected package libxcomposite1:arm64. 97s Preparing to unpack .../060-libxcomposite1_1%3a0.4.6-1build1_arm64.deb ... 97s Unpacking libxcomposite1:arm64 (1:0.4.6-1build1) ... 97s Selecting previously unselected package libxfixes3:arm64. 97s Preparing to unpack .../061-libxfixes3_1%3a6.0.0-2build2_arm64.deb ... 97s Unpacking libxfixes3:arm64 (1:6.0.0-2build2) ... 97s Selecting previously unselected package libxcursor1:arm64. 97s Preparing to unpack .../062-libxcursor1_1%3a1.2.3-1build1_arm64.deb ... 97s Unpacking libxcursor1:arm64 (1:1.2.3-1build1) ... 97s Selecting previously unselected package libxdamage1:arm64. 97s Preparing to unpack .../063-libxdamage1_1%3a1.1.6-1build2_arm64.deb ... 97s Unpacking libxdamage1:arm64 (1:1.1.6-1build2) ... 97s Selecting previously unselected package libxinerama1:arm64. 97s Preparing to unpack .../064-libxinerama1_2%3a1.1.4-3build2_arm64.deb ... 97s Unpacking libxinerama1:arm64 (2:1.1.4-3build2) ... 97s Selecting previously unselected package libxrandr2:arm64. 97s Preparing to unpack .../065-libxrandr2_2%3a1.5.4-1build1_arm64.deb ... 97s Unpacking libxrandr2:arm64 (2:1.5.4-1build1) ... 97s Selecting previously unselected package libgtk-3-common. 97s Preparing to unpack .../066-libgtk-3-common_3.24.50-1ubuntu2_all.deb ... 97s Unpacking libgtk-3-common (3.24.50-1ubuntu2) ... 97s Selecting previously unselected package libgtk-3-0t64:arm64. 97s Preparing to unpack .../067-libgtk-3-0t64_3.24.50-1ubuntu2_arm64.deb ... 97s Unpacking libgtk-3-0t64:arm64 (3.24.50-1ubuntu2) ... 98s Selecting previously unselected package libglvnd0:arm64. 98s Preparing to unpack .../068-libglvnd0_1.7.0-3_arm64.deb ... 98s Unpacking libglvnd0:arm64 (1.7.0-3) ... 98s Selecting previously unselected package libx11-xcb1:arm64. 98s Preparing to unpack .../069-libx11-xcb1_2%3a1.8.12-1build1_arm64.deb ... 98s Unpacking libx11-xcb1:arm64 (2:1.8.12-1build1) ... 98s Selecting previously unselected package libxcb-dri3-0:arm64. 98s Preparing to unpack .../070-libxcb-dri3-0_1.17.0-2build1_arm64.deb ... 98s Unpacking libxcb-dri3-0:arm64 (1.17.0-2build1) ... 98s Selecting previously unselected package libxcb-glx0:arm64. 98s Preparing to unpack .../071-libxcb-glx0_1.17.0-2build1_arm64.deb ... 98s Unpacking libxcb-glx0:arm64 (1.17.0-2build1) ... 98s Selecting previously unselected package libxcb-present0:arm64. 98s Preparing to unpack .../072-libxcb-present0_1.17.0-2build1_arm64.deb ... 98s Unpacking libxcb-present0:arm64 (1.17.0-2build1) ... 98s Selecting previously unselected package libxcb-xfixes0:arm64. 98s Preparing to unpack .../073-libxcb-xfixes0_1.17.0-2build1_arm64.deb ... 98s Unpacking libxcb-xfixes0:arm64 (1.17.0-2build1) ... 98s Selecting previously unselected package libxxf86vm1:arm64. 98s Preparing to unpack .../074-libxxf86vm1_1%3a1.1.4-2_arm64.deb ... 98s Unpacking libxxf86vm1:arm64 (1:1.1.4-2) ... 98s Selecting previously unselected package libxcb-randr0:arm64. 98s Preparing to unpack .../075-libxcb-randr0_1.17.0-2build1_arm64.deb ... 98s Unpacking libxcb-randr0:arm64 (1.17.0-2build1) ... 98s Selecting previously unselected package libxcb-sync1:arm64. 98s Preparing to unpack .../076-libxcb-sync1_1.17.0-2build1_arm64.deb ... 98s Unpacking libxcb-sync1:arm64 (1.17.0-2build1) ... 98s Selecting previously unselected package libxshmfence1:arm64. 98s Preparing to unpack .../077-libxshmfence1_1.3.3-1_arm64.deb ... 98s Unpacking libxshmfence1:arm64 (1.3.3-1) ... 98s Selecting previously unselected package mesa-libgallium:arm64. 98s Preparing to unpack .../078-mesa-libgallium_25.2.8-2ubuntu1_arm64.deb ... 98s Unpacking mesa-libgallium:arm64 (25.2.8-2ubuntu1) ... 98s Selecting previously unselected package libgbm1:arm64. 98s Preparing to unpack .../079-libgbm1_25.2.8-2ubuntu1_arm64.deb ... 98s Unpacking libgbm1:arm64 (25.2.8-2ubuntu1) ... 98s Selecting previously unselected package libvulkan1:arm64. 98s Preparing to unpack .../080-libvulkan1_1.4.335.0-1_arm64.deb ... 98s Unpacking libvulkan1:arm64 (1.4.335.0-1) ... 98s Selecting previously unselected package libgl1-mesa-dri:arm64. 98s Preparing to unpack .../081-libgl1-mesa-dri_25.2.8-2ubuntu1_arm64.deb ... 98s Unpacking libgl1-mesa-dri:arm64 (25.2.8-2ubuntu1) ... 98s Selecting previously unselected package libglx-mesa0:arm64. 98s Preparing to unpack .../082-libglx-mesa0_25.2.8-2ubuntu1_arm64.deb ... 98s Unpacking libglx-mesa0:arm64 (25.2.8-2ubuntu1) ... 99s Selecting previously unselected package libglx0:arm64. 99s Preparing to unpack .../083-libglx0_1.7.0-3_arm64.deb ... 99s Unpacking libglx0:arm64 (1.7.0-3) ... 99s Selecting previously unselected package libgl1:arm64. 99s Preparing to unpack .../084-libgl1_1.7.0-3_arm64.deb ... 99s Unpacking libgl1:arm64 (1.7.0-3) ... 99s Selecting previously unselected package libasound2-data. 99s Preparing to unpack .../085-libasound2-data_1.2.15.1-1_all.deb ... 99s Unpacking libasound2-data (1.2.15.1-1) ... 99s Selecting previously unselected package libasound2t64:arm64. 99s Preparing to unpack .../086-libasound2t64_1.2.15.1-1_arm64.deb ... 99s Unpacking libasound2t64:arm64 (1.2.15.1-1) ... 99s Selecting previously unselected package libgif7:arm64. 99s Preparing to unpack .../087-libgif7_5.2.2-1ubuntu3_arm64.deb ... 99s Unpacking libgif7:arm64 (5.2.2-1ubuntu3) ... 99s Selecting previously unselected package x11-common. 99s Preparing to unpack .../088-x11-common_1%3a7.7+24ubuntu1_all.deb ... 99s Unpacking x11-common (1:7.7+24ubuntu1) ... 99s Selecting previously unselected package libxtst6:arm64. 99s Preparing to unpack .../089-libxtst6_2%3a1.2.5-1build1_arm64.deb ... 99s Unpacking libxtst6:arm64 (2:1.2.5-1build1) ... 99s Selecting previously unselected package openjdk-21-jre:arm64. 99s Preparing to unpack .../090-openjdk-21-jre_21.0.10~6ea-1_arm64.deb ... 99s Unpacking openjdk-21-jre:arm64 (21.0.10~6ea-1) ... 99s Selecting previously unselected package default-jre. 99s Preparing to unpack .../091-default-jre_2%3a1.21-76build1_arm64.deb ... 99s Unpacking default-jre (2:1.21-76build1) ... 99s Selecting previously unselected package libhtscodecs2:arm64. 99s Preparing to unpack .../092-libhtscodecs2_1.6.1-2_arm64.deb ... 99s Unpacking libhtscodecs2:arm64 (1.6.1-2) ... 99s Selecting previously unselected package libhts3t64:arm64. 99s Preparing to unpack .../093-libhts3t64_1.22.1+ds2-1_arm64.deb ... 99s Unpacking libhts3t64:arm64 (1.22.1+ds2-1) ... 99s Selecting previously unselected package samtools. 99s Preparing to unpack .../094-samtools_1.22.1-1_arm64.deb ... 99s Unpacking samtools (1.22.1-1) ... 99s Selecting previously unselected package fastaq. 99s Preparing to unpack .../095-fastaq_3.17.0-9build1_all.deb ... 99s Unpacking fastaq (3.17.0-9build1) ... 99s Selecting previously unselected package python3-networkx. 99s Preparing to unpack .../096-python3-networkx_3.2.1-4ubuntu2_all.deb ... 99s Unpacking python3-networkx (3.2.1-4ubuntu2) ... 100s Selecting previously unselected package python3-pysam. 100s Preparing to unpack .../097-python3-pysam_0.23.3+ds-2_arm64.deb ... 100s Unpacking python3-pysam (0.23.3+ds-2) ... 100s Selecting previously unselected package kmc. 100s Preparing to unpack .../098-kmc_3.2.4+dfsg-1build1_arm64.deb ... 100s Unpacking kmc (3.2.4+dfsg-1build1) ... 100s Selecting previously unselected package mummer. 100s Preparing to unpack .../099-mummer_3.23+dfsg-8build1_arm64.deb ... 100s Unpacking mummer (3.23+dfsg-8build1) ... 100s Selecting previously unselected package libbambamc0:arm64. 100s Preparing to unpack .../100-libbambamc0_0.0.50-7_arm64.deb ... 100s Unpacking libbambamc0:arm64 (0.0.50-7) ... 100s Selecting previously unselected package smalt. 100s Preparing to unpack .../101-smalt_0.7.6-13_arm64.deb ... 100s Unpacking smalt (0.7.6-13) ... 100s Selecting previously unselected package iva. 100s Preparing to unpack .../102-iva_1.0.11+ds-6_arm64.deb ... 100s Unpacking iva (1.0.11+ds-6) ... 100s Selecting previously unselected package libjbzip2-java. 100s Preparing to unpack .../103-libjbzip2-java_0.9.1-8_all.deb ... 100s Unpacking libjbzip2-java (0.9.1-8) ... 100s Selecting previously unselected package trimmomatic. 100s Preparing to unpack .../104-trimmomatic_0.39+dfsg-2build1_all.deb ... 100s Unpacking trimmomatic (0.39+dfsg-2build1) ... 100s Setting up libhtscodecs2:arm64 (1.6.1-2) ... 100s Setting up libgraphite2-3:arm64 (1.3.14-11ubuntu1) ... 100s Setting up libxcb-dri3-0:arm64 (1.17.0-2build1) ... 100s Setting up liblcms2-2:arm64 (2.17-1) ... 100s Setting up libpixman-1-0:arm64 (0.46.4-1) ... 100s Setting up libsharpyuv0:arm64 (1.5.0-0.1build1) ... 100s Setting up libx11-xcb1:arm64 (2:1.8.12-1build1) ... 100s Setting up libxdamage1:arm64 (1:1.1.6-1build2) ... 100s Setting up libxcb-xfixes0:arm64 (1.17.0-2build1) ... 100s Setting up liblerc4:arm64 (4.0.0+ds-5ubuntu2) ... 100s Setting up hicolor-icon-theme (0.18-2build1) ... 101s Setting up libxi6:arm64 (2:1.8.2-2) ... 101s Setting up java-common (0.76build1) ... 101s Setting up libxrender1:arm64 (1:0.9.12-1) ... 101s Setting up libdatrie1:arm64 (0.2.14-1) ... 101s Setting up libxcb-render0:arm64 (1.17.0-2build1) ... 101s Setting up libglvnd0:arm64 (1.7.0-3) ... 101s Setting up libxcb-glx0:arm64 (1.17.0-2build1) ... 101s Setting up libgdk-pixbuf2.0-common (2.44.4+dfsg-1) ... 101s Setting up x11-common (1:7.7+24ubuntu1) ... 101s Setting up libdeflate0:arm64 (1.23-2) ... 101s Setting up libxcb-shm0:arm64 (1.17.0-2build1) ... 101s Setting up python3-networkx (3.2.1-4ubuntu2) ... 102s Setting up libjbig0:arm64 (2.1-6.1ubuntu3) ... 102s Setting up libcolord2:arm64 (1.4.8-2) ... 102s Setting up libxxf86vm1:arm64 (1:1.1.4-2) ... 102s Setting up libxcb-present0:arm64 (1.17.0-2build1) ... 102s Setting up libdconf1:arm64 (0.49.0-4) ... 102s Setting up libasound2-data (1.2.15.1-1) ... 102s Setting up libblas3:arm64 (3.12.1-7ubuntu1) ... 102s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 102s Setting up libasound2t64:arm64 (1.2.15.1-1) ... 102s Setting up libepoxy0:arm64 (1.5.10-2build1) ... 102s Setting up libxfixes3:arm64 (1:6.0.0-2build2) ... 102s Setting up libxcb-sync1:arm64 (1.17.0-2build1) ... 102s Setting up libavahi-common-data:arm64 (0.8-17ubuntu1) ... 102s Setting up libatspi2.0-0t64:arm64 (2.59.0-1) ... 102s Setting up libxinerama1:arm64 (2:1.1.4-3build2) ... 102s Setting up libbambamc0:arm64 (0.0.50-7) ... 102s Setting up fonts-dejavu-mono (2.37-8build1) ... 102s Setting up python3-numpy-dev:arm64 (1:2.3.5+ds-3) ... 102s Setting up libxrandr2:arm64 (2:1.5.4-1build1) ... 102s Setting up fonts-dejavu-core (2.37-8build1) ... 102s Setting up libjbzip2-java (0.9.1-8) ... 102s Setting up libpcsclite1:arm64 (2.4.0-2) ... 102s Setting up libjpeg-turbo8:arm64 (2.1.5-4ubuntu2) ... 102s Setting up libgfortran5:arm64 (15.2.0-11ubuntu1) ... 102s Setting up libvulkan1:arm64 (1.4.335.0-1) ... 102s Setting up libwebp7:arm64 (1.5.0-0.1build1) ... 102s Setting up libgif7:arm64 (5.2.2-1ubuntu3) ... 102s Setting up libxshmfence1:arm64 (1.3.3-1) ... 102s Setting up at-spi2-common (2.59.0-1) ... 102s Setting up libxcb-randr0:arm64 (1.17.0-2build1) ... 102s Setting up mummer (3.23+dfsg-8build1) ... 102s Setting up libhts3t64:arm64 (1.22.1+ds2-1) ... 102s Setting up libharfbuzz0b:arm64 (12.3.0-4) ... 102s Setting up libthai-data (0.1.30-1) ... 102s Setting up libwayland-egl1:arm64 (1.24.0-2) ... 102s Setting up ca-certificates-java (20240118build1) ... 102s No JRE found. Skipping Java certificates setup. 102s Setting up kmc (3.2.4+dfsg-1build1) ... 102s Setting up libxcomposite1:arm64 (1:0.4.6-1build1) ... 102s Setting up libwayland-client0:arm64 (1.24.0-2) ... 102s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 102s Setting up smalt (0.7.6-13) ... 102s Setting up mesa-libgallium:arm64 (25.2.8-2ubuntu1) ... 102s Setting up liblapack3:arm64 (3.12.1-7ubuntu1) ... 102s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 102s Setting up python3-pysam (0.23.3+ds-2) ... 102s Setting up libatk1.0-0t64:arm64 (2.59.0-1) ... 102s Setting up openjdk-21-jre-headless:arm64 (21.0.10~6ea-1) ... 102s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/java to provide /usr/bin/java (java) in auto mode 102s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode 102s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode 102s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode 102s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode 102s Setting up libgbm1:arm64 (25.2.8-2ubuntu1) ... 102s Setting up fontconfig-config (2.15.0-2.4ubuntu1) ... 103s Setting up libxtst6:arm64 (2:1.2.5-1build1) ... 103s Setting up libxcursor1:arm64 (1:1.2.3-1build1) ... 103s Setting up libgl1-mesa-dri:arm64 (25.2.8-2ubuntu1) ... 103s Setting up libavahi-common3:arm64 (0.8-17ubuntu1) ... 103s Setting up dconf-service (0.49.0-4) ... 103s Setting up samtools (1.22.1-1) ... 103s Setting up libthai0:arm64 (0.1.30-1) ... 103s Setting up python3-numpy (1:2.3.5+ds-3) ... 105s Setting up libtiff6:arm64 (4.7.0-3ubuntu3) ... 105s Setting up libwayland-cursor0:arm64 (1.24.0-2) ... 105s Setting up libgdk-pixbuf-2.0-0:arm64 (2.44.4+dfsg-1) ... 105s Setting up libfontconfig1:arm64 (2.15.0-2.4ubuntu1) ... 105s Setting up libavahi-client3:arm64 (0.8-17ubuntu1) ... 105s Setting up libatk-bridge2.0-0t64:arm64 (2.59.0-1) ... 105s Setting up gtk-update-icon-cache (4.20.3+ds-3) ... 105s Setting up fontconfig (2.15.0-2.4ubuntu1) ... 107s Regenerating fonts cache... done. 107s Setting up libglx-mesa0:arm64 (25.2.8-2ubuntu1) ... 107s Setting up libglx0:arm64 (1.7.0-3) ... 107s Setting up dconf-gsettings-backend:arm64 (0.49.0-4) ... 107s Setting up fastaq (3.17.0-9build1) ... 107s Setting up libpango-1.0-0:arm64 (1.56.4-1) ... 107s Setting up libcairo2:arm64 (1.18.4-3) ... 107s Setting up libgl1:arm64 (1.7.0-3) ... 107s Setting up adwaita-icon-theme (49.0-1) ... 107s update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode 107s Setting up libcairo-gobject2:arm64 (1.18.4-3) ... 107s Setting up libpangoft2-1.0-0:arm64 (1.56.4-1) ... 107s Setting up libcups2t64:arm64 (2.4.16-1ubuntu1) ... 107s Setting up libgtk-3-common (3.24.50-1ubuntu2) ... 107s Setting up libpangocairo-1.0-0:arm64 (1.56.4-1) ... 107s Processing triggers for libc-bin (2.42-2ubuntu4) ... 107s Processing triggers for man-db (2.13.1-1) ... 108s Processing triggers for libglib2.0-0t64:arm64 (2.86.3-4) ... 108s Setting up libgtk-3-0t64:arm64 (3.24.50-1ubuntu2) ... 108s Processing triggers for ca-certificates-java (20240118build1) ... 109s Adding debian:ACCVRAIZ1.pem 109s Adding debian:AC_RAIZ_FNMT-RCM.pem 109s Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem 109s Adding debian:ANF_Secure_Server_Root_CA.pem 109s Adding debian:Actalis_Authentication_Root_CA.pem 109s Adding debian:AffirmTrust_Commercial.pem 109s Adding debian:AffirmTrust_Networking.pem 109s Adding debian:AffirmTrust_Premium.pem 109s Adding debian:AffirmTrust_Premium_ECC.pem 109s Adding debian:Amazon_Root_CA_1.pem 109s Adding debian:Amazon_Root_CA_2.pem 109s Adding debian:Amazon_Root_CA_3.pem 109s Adding debian:Amazon_Root_CA_4.pem 109s Adding debian:Atos_TrustedRoot_2011.pem 109s Adding debian:Atos_TrustedRoot_Root_CA_ECC_TLS_2021.pem 109s Adding debian:Atos_TrustedRoot_Root_CA_RSA_TLS_2021.pem 109s Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem 109s Adding debian:BJCA_Global_Root_CA1.pem 109s Adding debian:BJCA_Global_Root_CA2.pem 109s Adding debian:Baltimore_CyberTrust_Root.pem 109s Adding debian:Buypass_Class_2_Root_CA.pem 109s Adding debian:Buypass_Class_3_Root_CA.pem 109s Adding debian:CA_Disig_Root_R2.pem 109s Adding debian:CFCA_EV_ROOT.pem 109s Adding debian:COMODO_Certification_Authority.pem 109s Adding debian:COMODO_ECC_Certification_Authority.pem 109s Adding debian:COMODO_RSA_Certification_Authority.pem 109s Adding debian:Certainly_Root_E1.pem 109s Adding debian:Certainly_Root_R1.pem 109s Adding debian:Certigna.pem 109s Adding debian:Certigna_Root_CA.pem 109s Adding debian:Certum_EC-384_CA.pem 109s Adding debian:Certum_Trusted_Network_CA.pem 109s Adding debian:Certum_Trusted_Network_CA_2.pem 109s Adding debian:Certum_Trusted_Root_CA.pem 109s Adding debian:CommScope_Public_Trust_ECC_Root-01.pem 109s Adding debian:CommScope_Public_Trust_ECC_Root-02.pem 109s Adding debian:CommScope_Public_Trust_RSA_Root-01.pem 109s Adding debian:CommScope_Public_Trust_RSA_Root-02.pem 109s Adding debian:Comodo_AAA_Services_root.pem 109s Adding debian:D-TRUST_BR_Root_CA_1_2020.pem 109s Adding debian:D-TRUST_BR_Root_CA_2_2023.pem 109s Adding debian:D-TRUST_EV_Root_CA_1_2020.pem 109s Adding debian:D-TRUST_EV_Root_CA_2_2023.pem 109s Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem 109s Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem 109s Adding debian:DigiCert_Assured_ID_Root_CA.pem 109s Adding debian:DigiCert_Assured_ID_Root_G2.pem 109s Adding debian:DigiCert_Assured_ID_Root_G3.pem 109s Adding debian:DigiCert_Global_Root_CA.pem 109s Adding debian:DigiCert_Global_Root_G2.pem 109s Adding debian:DigiCert_Global_Root_G3.pem 109s Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem 109s Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem 109s Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem 109s Adding debian:DigiCert_Trusted_Root_G4.pem 109s Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem 109s Adding debian:Entrust_Root_Certification_Authority.pem 109s Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem 109s Adding debian:Entrust_Root_Certification_Authority_-_G2.pem 109s Adding debian:FIRMAPROFESIONAL_CA_ROOT-A_WEB.pem 109s Adding debian:GDCA_TrustAUTH_R5_ROOT.pem 109s Adding debian:GLOBALTRUST_2020.pem 109s Adding debian:GTS_Root_R1.pem 109s Adding debian:GTS_Root_R2.pem 109s Adding debian:GTS_Root_R3.pem 109s Adding debian:GTS_Root_R4.pem 109s Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem 109s Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem 109s Adding debian:GlobalSign_Root_CA.pem 109s Adding debian:GlobalSign_Root_CA_-_R3.pem 109s Adding debian:GlobalSign_Root_CA_-_R6.pem 109s Adding debian:GlobalSign_Root_E46.pem 109s Adding debian:GlobalSign_Root_R46.pem 109s Adding debian:Go_Daddy_Class_2_CA.pem 109s Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem 109s Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem 109s Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem 109s Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem 109s Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem 109s Adding debian:HiPKI_Root_CA_-_G1.pem 109s Adding debian:Hongkong_Post_Root_CA_3.pem 109s Adding debian:ISRG_Root_X1.pem 109s Adding debian:ISRG_Root_X2.pem 109s Adding debian:IdenTrust_Commercial_Root_CA_1.pem 109s Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem 109s Adding debian:Izenpe.com.pem 109s Adding debian:Microsec_e-Szigno_Root_CA_2009.pem 109s Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem 109s Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem 109s Adding debian:NAVER_Global_Root_Certification_Authority.pem 109s Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem 109s Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem 109s Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem 109s Adding debian:QuoVadis_Root_CA_1_G3.pem 109s Adding debian:QuoVadis_Root_CA_2.pem 109s Adding debian:QuoVadis_Root_CA_2_G3.pem 109s Adding debian:QuoVadis_Root_CA_3.pem 109s Adding debian:QuoVadis_Root_CA_3_G3.pem 109s Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem 109s Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem 109s Adding debian:SSL.com_Root_Certification_Authority_ECC.pem 109s Adding debian:SSL.com_Root_Certification_Authority_RSA.pem 109s Adding debian:SSL.com_TLS_ECC_Root_CA_2022.pem 109s Adding debian:SSL.com_TLS_RSA_Root_CA_2022.pem 109s Adding debian:SZAFIR_ROOT_CA2.pem 109s Adding debian:Sectigo_Public_Server_Authentication_Root_E46.pem 109s Adding debian:Sectigo_Public_Server_Authentication_Root_R46.pem 109s Adding debian:SecureSign_Root_CA12.pem 109s Adding debian:SecureSign_Root_CA14.pem 109s Adding debian:SecureSign_Root_CA15.pem 109s Adding debian:SecureTrust_CA.pem 109s Adding debian:Secure_Global_CA.pem 109s Adding debian:Security_Communication_ECC_RootCA1.pem 109s Adding debian:Security_Communication_RootCA2.pem 109s Adding debian:Starfield_Class_2_CA.pem 109s Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem 109s Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem 109s Adding debian:SwissSign_Gold_CA_-_G2.pem 109s Adding debian:T-TeleSec_GlobalRoot_Class_2.pem 109s Adding debian:T-TeleSec_GlobalRoot_Class_3.pem 109s Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem 109s Adding debian:TWCA_CYBER_Root_CA.pem 109s Adding debian:TWCA_Global_Root_CA.pem 109s Adding debian:TWCA_Root_Certification_Authority.pem 109s Adding debian:Telekom_Security_TLS_ECC_Root_2020.pem 109s Adding debian:Telekom_Security_TLS_RSA_Root_2023.pem 109s Adding debian:TeliaSonera_Root_CA_v1.pem 109s Adding debian:Telia_Root_CA_v2.pem 109s Adding debian:TrustAsia_Global_Root_CA_G3.pem 109s Adding debian:TrustAsia_Global_Root_CA_G4.pem 109s Adding debian:Trustwave_Global_Certification_Authority.pem 109s Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem 109s Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem 109s Adding debian:TunTrust_Root_CA.pem 109s Adding debian:UCA_Extended_Validation_Root.pem 109s Adding debian:UCA_Global_G2_Root.pem 109s Adding debian:USERTrust_ECC_Certification_Authority.pem 109s Adding debian:USERTrust_RSA_Certification_Authority.pem 109s Adding debian:XRamp_Global_CA_Root.pem 109s Adding debian:certSIGN_ROOT_CA.pem 109s Adding debian:certSIGN_Root_CA_G2.pem 109s Adding debian:e-Szigno_Root_CA_2017.pem 109s Adding debian:ePKI_Root_Certification_Authority.pem 109s Adding debian:emSign_ECC_Root_CA_-_C3.pem 109s Adding debian:emSign_ECC_Root_CA_-_G3.pem 109s Adding debian:emSign_Root_CA_-_C1.pem 109s Adding debian:emSign_Root_CA_-_G1.pem 109s Adding debian:vTrus_ECC_Root_CA.pem 109s Adding debian:vTrus_Root_CA.pem 109s done. 109s Setting up default-jre-headless (2:1.21-76build1) ... 109s Setting up iva (1.0.11+ds-6) ... 109s Setting up openjdk-21-jre:arm64 (21.0.10~6ea-1) ... 109s Setting up default-jre (2:1.21-76build1) ... 109s Setting up trimmomatic (0.39+dfsg-2build1) ... 109s Processing triggers for libc-bin (2.42-2ubuntu4) ... 110s autopkgtest [18:13:20]: test test-example: [----------------------- 136s The following command failed with exit code 1 136s /usr/bin/iva --threads 1 --trimmomatic /usr/share/java/trimmomatic.jar --pcr_primers hiv_pcr_primers.fa -f reads_1.fq.gz -r reads_2.fq.gz iva.out 136s 136s The output was: 136s 136s usage: iva [options] {-f reads_fwd -r reads_rev | --fr reads} 136s iva: error: the following arguments are required: Output directory 136s Traceback (most recent call last): 136s File "/usr/bin/iva", line 184, in 136s p1.start() 136s ~~~~~~~~^^ 136s File "/usr/lib/python3.14/multiprocessing/process.py", line 121, in start 136s self._popen = self._Popen(self) 136s ~~~~~~~~~~~^^^^^^ 136s File "/usr/lib/python3.14/multiprocessing/context.py", line 224, in _Popen 136s return _default_context.get_context().Process._Popen(process_obj) 136s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^ 136s File "/usr/lib/python3.14/multiprocessing/context.py", line 300, in _Popen 136s return Popen(process_obj) 136s File "/usr/lib/python3.14/multiprocessing/popen_forkserver.py", line 35, in __init__ 136s super().__init__(process_obj) 136s ~~~~~~~~~~~~~~~~^^^^^^^^^^^^^ 136s File "/usr/lib/python3.14/multiprocessing/popen_fork.py", line 20, in __init__ 136s self._launch(process_obj) 136s ~~~~~~~~~~~~^^^^^^^^^^^^^ 136s File "/usr/lib/python3.14/multiprocessing/popen_forkserver.py", line 51, in _launch 136s self.sentinel, w = forkserver.connect_to_new_process(self._fds) 136s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^ 136s File "/usr/lib/python3.14/multiprocessing/forkserver.py", line 106, in connect_to_new_process 136s connection.answer_challenge( 136s ~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 136s wrapped_client, self._forkserver_authkey) 136s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 136s File "/usr/lib/python3.14/multiprocessing/connection.py", line 970, in answer_challenge 136s message = connection.recv_bytes(256) # reject large message 136s File "/usr/lib/python3.14/multiprocessing/connection.py", line 222, in recv_bytes 136s buf = self._recv_bytes(maxlength) 136s File "/usr/lib/python3.14/multiprocessing/connection.py", line 447, in _recv_bytes 136s buf = self._recv(4) 136s File "/usr/lib/python3.14/multiprocessing/connection.py", line 412, in _recv 136s chunk = read(handle, to_read) 136s ConnectionResetError: [Errno 104] Connection reset by peer 136s 136s Running iva in test mode... 136s Copied input test files into here: /tmp/tmp.g2Tx4U9L9k/test 136s Current working directory: /tmp/tmp.g2Tx4U9L9k/test 136s Running iva on the test data with the command: 136s /usr/bin/iva --threads 1 --trimmomatic /usr/share/java/trimmomatic.jar --pcr_primers hiv_pcr_primers.fa -f reads_1.fq.gz -r reads_2.fq.gz iva.out 137s autopkgtest [18:13:47]: test test-example: -----------------------] 137s autopkgtest [18:13:47]: test test-example: - - - - - - - - - - results - - - - - - - - - - 137s test-example FAIL non-zero exit status 1 138s autopkgtest [18:13:48]: test test-example: - - - - - - - - - - stderr - - - - - - - - - - 138s The following command failed with exit code 1 138s /usr/bin/iva --threads 1 --trimmomatic /usr/share/java/trimmomatic.jar --pcr_primers hiv_pcr_primers.fa -f reads_1.fq.gz -r reads_2.fq.gz iva.out 138s 138s The output was: 138s 138s usage: iva [options] {-f reads_fwd -r reads_rev | --fr reads} 138s iva: error: the following arguments are required: Output directory 138s Traceback (most recent call last): 138s File "/usr/bin/iva", line 184, in 138s p1.start() 138s ~~~~~~~~^^ 138s File "/usr/lib/python3.14/multiprocessing/process.py", line 121, in start 138s self._popen = self._Popen(self) 138s ~~~~~~~~~~~^^^^^^ 138s File "/usr/lib/python3.14/multiprocessing/context.py", line 224, in _Popen 138s return _default_context.get_context().Process._Popen(process_obj) 138s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^ 138s File "/usr/lib/python3.14/multiprocessing/context.py", line 300, in _Popen 138s return Popen(process_obj) 138s File "/usr/lib/python3.14/multiprocessing/popen_forkserver.py", line 35, in __init__ 138s super().__init__(process_obj) 138s ~~~~~~~~~~~~~~~~^^^^^^^^^^^^^ 138s File "/usr/lib/python3.14/multiprocessing/popen_fork.py", line 20, in __init__ 138s self._launch(process_obj) 138s ~~~~~~~~~~~~^^^^^^^^^^^^^ 138s File "/usr/lib/python3.14/multiprocessing/popen_forkserver.py", line 51, in _launch 138s self.sentinel, w = forkserver.connect_to_new_process(self._fds) 138s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^ 138s File "/usr/lib/python3.14/multiprocessing/forkserver.py", line 106, in connect_to_new_process 138s connection.answer_challenge( 138s ~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 138s wrapped_client, self._forkserver_authkey) 138s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 138s File "/usr/lib/python3.14/multiprocessing/connection.py", line 970, in answer_challenge 138s message = connection.recv_bytes(256) # reject large message 138s File "/usr/lib/python3.14/multiprocessing/connection.py", line 222, in recv_bytes 138s buf = self._recv_bytes(maxlength) 138s File "/usr/lib/python3.14/multiprocessing/connection.py", line 447, in _recv_bytes 138s buf = self._recv(4) 138s File "/usr/lib/python3.14/multiprocessing/connection.py", line 412, in _recv 138s chunk = read(handle, to_read) 138s ConnectionResetError: [Errno 104] Connection reset by peer 138s 138s autopkgtest [18:13:48]: @@@@@@@@@@@@@@@@@@@@ summary 138s test-example FAIL non-zero exit status 1