0s autopkgtest [02:25:29]: starting date and time: 2026-02-05 02:25:29+0000 0s autopkgtest [02:25:29]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [02:25:29]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.hrirw_xy/out --timeout-copy=6000 --needs-internet=try --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc,src:chiark-tcl --apt-upgrade hts-nim-tools --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=glibc/2.42-2ubuntu5 chiark-tcl/1.3.7build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-arm64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@sto01-arm64-2.secgroup --name adt-resolute-arm64-hts-nim-tools-20260205-022529-juju-7f2275-prod-proposed-migration-environment-2-8f98dc3a-de6e-498a-bc26-24f21649a191 --image adt/ubuntu-resolute-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-autopkgtest-workers-arm64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 5s Creating nova instance adt-resolute-arm64-hts-nim-tools-20260205-022529-juju-7f2275-prod-proposed-migration-environment-2-8f98dc3a-de6e-498a-bc26-24f21649a191 from image adt/ubuntu-resolute-arm64-server-20260204.img (UUID f58d981d-b271-4157-b9b1-fd704695563c)... 75s autopkgtest [02:26:44]: testbed dpkg architecture: arm64 75s autopkgtest [02:26:44]: testbed apt version: 3.1.14 76s autopkgtest [02:26:45]: @@@@@@@@@@@@@@@@@@@@ test bed setup 76s autopkgtest [02:26:45]: testbed release detected to be: None 77s autopkgtest [02:26:46]: updating testbed package index (apt update) 78s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 78s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 78s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 78s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 78s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [227 kB] 78s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [5260 B] 78s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [35.4 kB] 78s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1719 kB] 78s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 Packages [265 kB] 78s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 c-n-f Metadata [7328 B] 78s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 Packages [52.9 kB] 78s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 c-n-f Metadata [328 B] 79s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 Packages [1481 kB] 79s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 c-n-f Metadata [40.2 kB] 79s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 Packages [26.0 kB] 79s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 c-n-f Metadata [776 B] 82s Fetched 3984 kB in 2s (2110 kB/s) 83s Reading package lists... 84s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 84s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 84s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 84s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 85s Reading package lists... 85s Reading package lists... 85s Building dependency tree... 85s Reading state information... 86s Calculating upgrade... 86s The following packages will be upgraded: 86s libc-bin libc-gconv-modules-extra libc6 locales pollinate python3-linkify-it 86s python3-referencing sed 86s 8 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 86s Need to get 8110 kB of archives. 86s After this operation, 0 B of additional disk space will be used. 86s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 sed arm64 4.9-2build3 [193 kB] 86s Get:2 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 libc-gconv-modules-extra arm64 2.42-2ubuntu5 [1413 kB] 87s Get:3 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 libc6 arm64 2.42-2ubuntu5 [1594 kB] 87s Get:4 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 libc-bin arm64 2.42-2ubuntu5 [599 kB] 87s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 locales all 2.42-2ubuntu5 [4255 kB] 87s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-linkify-it all 2.0.3-1ubuntu3 [19.4 kB] 87s Get:7 http://ftpmaster.internal/ubuntu resolute/main arm64 pollinate all 4.33-4ubuntu5 [14.0 kB] 87s Get:8 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-referencing all 0.36.2-1ubuntu2 [22.2 kB] 87s dpkg-preconfigure: unable to re-open stdin: No such file or directory 87s Fetched 8110 kB in 1s (10.8 MB/s) 88s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 89360 files and directories currently installed.) 88s Preparing to unpack .../sed_4.9-2build3_arm64.deb ... 88s Unpacking sed (4.9-2build3) over (4.9-2build2) ... 88s Setting up sed (4.9-2build3) ... 88s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 89360 files and directories currently installed.) 88s Preparing to unpack .../libc-gconv-modules-extra_2.42-2ubuntu5_arm64.deb ... 88s Unpacking libc-gconv-modules-extra:arm64 (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 88s Setting up libc-gconv-modules-extra:arm64 (2.42-2ubuntu5) ... 88s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 89360 files and directories currently installed.) 88s Preparing to unpack .../libc6_2.42-2ubuntu5_arm64.deb ... 88s Unpacking libc6:arm64 (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 88s Setting up libc6:arm64 (2.42-2ubuntu5) ... 89s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 89360 files and directories currently installed.) 89s Preparing to unpack .../libc-bin_2.42-2ubuntu5_arm64.deb ... 89s Unpacking libc-bin (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 89s Setting up libc-bin (2.42-2ubuntu5) ... 89s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 89360 files and directories currently installed.) 89s Preparing to unpack .../locales_2.42-2ubuntu5_all.deb ... 89s Unpacking locales (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 89s Preparing to unpack .../python3-linkify-it_2.0.3-1ubuntu3_all.deb ... 89s Unpacking python3-linkify-it (2.0.3-1ubuntu3) over (2.0.3-1ubuntu2) ... 89s Preparing to unpack .../pollinate_4.33-4ubuntu5_all.deb ... 89s Unpacking pollinate (4.33-4ubuntu5) over (4.33-4ubuntu4) ... 89s Preparing to unpack .../python3-referencing_0.36.2-1ubuntu2_all.deb ... 89s Unpacking python3-referencing (0.36.2-1ubuntu2) over (0.36.2-1ubuntu1) ... 90s Setting up locales (2.42-2ubuntu5) ... 90s Generating locales (this might take a while)... 92s en_US.UTF-8... done 92s Generation complete. 92s Setting up pollinate (4.33-4ubuntu5) ... 103s Setting up python3-linkify-it (2.0.3-1ubuntu3) ... 103s Setting up python3-referencing (0.36.2-1ubuntu2) ... 103s Processing triggers for man-db (2.13.1-1) ... 104s Processing triggers for install-info (7.2-5) ... 104s Processing triggers for systemd (259-1ubuntu3) ... 105s autopkgtest [02:27:14]: upgrading testbed (apt dist-upgrade and autopurge) 106s Reading package lists... 106s Building dependency tree... 106s Reading state information... 106s Calculating upgrade... 107s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 107s Reading package lists... 107s Building dependency tree... 107s Reading state information... 107s Solving dependencies... 108s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 108s autopkgtest [02:27:17]: rebooting testbed after setup commands that affected boot 147s autopkgtest [02:27:56]: testbed running kernel: Linux 6.18.0-9-generic #9-Ubuntu SMP PREEMPT_DYNAMIC Mon Jan 12 16:41:39 UTC 2026 150s autopkgtest [02:27:59]: @@@@@@@@@@@@@@@@@@@@ apt-source hts-nim-tools 151s Get:1 http://ftpmaster.internal/ubuntu resolute/universe hts-nim-tools 0.2.1-4 (dsc) [1666 B] 151s Get:2 http://ftpmaster.internal/ubuntu resolute/universe hts-nim-tools 0.2.1-4 (tar) [6803 B] 151s Get:3 http://ftpmaster.internal/ubuntu resolute/universe hts-nim-tools 0.2.1-4 (diff) [3712 B] 151s gpgv: Signature made Fri Sep 26 06:27:29 2025 UTC 151s gpgv: using EDDSA key A095B66EE09024BEE6A2F0722A27904BD7243EDA 151s gpgv: issuer "nilesh@debian.org" 151s gpgv: Can't check signature: No public key 151s dpkg-source: warning: cannot verify inline signature for ./hts-nim-tools_0.2.1-4.dsc: no acceptable signature found 151s autopkgtest [02:28:00]: testing package hts-nim-tools version 0.2.1-4 152s autopkgtest [02:28:01]: build not needed 152s autopkgtest [02:28:01]: test run-unit-test: preparing testbed 152s Reading package lists... 152s Building dependency tree... 152s Reading state information... 153s Solving dependencies... 153s The following NEW packages will be installed: 153s comerr-dev hts-nim-tools krb5-multidev libbrotli-dev libbz2-dev libc-dev-bin 153s libc6-dev libcrypt-dev libcurl4-gnutls-dev libdeflate-dev libdeflate0 153s libevent-2.1-7t64 libgmp-dev libgmpxx4ldbl libgnutls-dane0t64 153s libgnutls-openssl27t64 libgnutls28-dev libgssrpc4t64 libhts-dev libhts3t64 153s libhtscodecs2 libidn2-dev libkadm5clnt-mit12 libkadm5srv-mit12 libkdb5-10t64 153s libkrb5-dev libldap-dev liblzma-dev libnghttp2-dev libp11-kit-dev 153s libpkgconf3 libpsl-dev librtmp-dev libssh2-1-dev libssl-dev libtasn1-6-dev 153s libunbound8 libzstd-dev linux-libc-dev nettle-dev nim nim-hts-dev 153s nim-hts-examples pkgconf pkgconf-bin rpcsvc-proto zlib1g-dev 154s 0 upgraded, 47 newly installed, 0 to remove and 0 not upgraded. 154s Need to get 28.9 MB of archives. 154s After this operation, 101 MB of additional disk space will be used. 154s Get:1 http://ftpmaster.internal/ubuntu resolute/universe arm64 nim arm64 2.2.4-2 [6412 kB] 154s Get:2 http://ftpmaster.internal/ubuntu resolute/universe arm64 nim-hts-dev all 0.3.25+ds-3 [35.8 kB] 154s Get:3 http://ftpmaster.internal/ubuntu resolute/universe arm64 hts-nim-tools arm64 0.2.1-4 [208 kB] 154s Get:4 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 libc-dev-bin arm64 2.42-2ubuntu5 [22.5 kB] 154s Get:5 http://ftpmaster.internal/ubuntu resolute/main arm64 linux-libc-dev arm64 6.18.0-9.9 [1834 kB] 154s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 libcrypt-dev arm64 1:4.5.1-1 [123 kB] 154s Get:7 http://ftpmaster.internal/ubuntu resolute/main arm64 rpcsvc-proto arm64 1.4.3-1build1 [65.6 kB] 154s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 libc6-dev arm64 2.42-2ubuntu5 [1765 kB] 154s Get:9 http://ftpmaster.internal/ubuntu resolute/main arm64 comerr-dev arm64 2.1-1.47.2-3ubuntu2 [45.6 kB] 154s Get:10 http://ftpmaster.internal/ubuntu resolute/main arm64 libgssrpc4t64 arm64 1.22.1-2 [57.9 kB] 154s Get:11 http://ftpmaster.internal/ubuntu resolute/main arm64 libkadm5clnt-mit12 arm64 1.22.1-2 [39.9 kB] 154s Get:12 http://ftpmaster.internal/ubuntu resolute/main arm64 libkdb5-10t64 arm64 1.22.1-2 [41.4 kB] 154s Get:13 http://ftpmaster.internal/ubuntu resolute/main arm64 libkadm5srv-mit12 arm64 1.22.1-2 [54.8 kB] 154s Get:14 http://ftpmaster.internal/ubuntu resolute/main arm64 krb5-multidev arm64 1.22.1-2 [126 kB] 154s Get:15 http://ftpmaster.internal/ubuntu resolute/main arm64 libbrotli-dev arm64 1.1.0-2build6 [355 kB] 154s Get:16 http://ftpmaster.internal/ubuntu resolute/main arm64 libbz2-dev arm64 1.0.8-6build2 [34.9 kB] 154s Get:17 http://ftpmaster.internal/ubuntu resolute/main arm64 libevent-2.1-7t64 arm64 2.1.12-stable-10build1 [152 kB] 154s Get:18 http://ftpmaster.internal/ubuntu resolute/main arm64 libunbound8 arm64 1.24.2-1ubuntu1 [436 kB] 154s Get:19 http://ftpmaster.internal/ubuntu resolute/main arm64 libgnutls-dane0t64 arm64 3.8.10-3ubuntu1 [24.5 kB] 154s Get:20 http://ftpmaster.internal/ubuntu resolute/main arm64 libgnutls-openssl27t64 arm64 3.8.10-3ubuntu1 [24.4 kB] 154s Get:21 http://ftpmaster.internal/ubuntu resolute/main arm64 libidn2-dev arm64 2.3.8-4 [123 kB] 154s Get:22 http://ftpmaster.internal/ubuntu resolute/main arm64 libp11-kit-dev arm64 0.25.10-1 [29.3 kB] 154s Get:23 http://ftpmaster.internal/ubuntu resolute/main arm64 libtasn1-6-dev arm64 4.21.0-2 [91.3 kB] 154s Get:24 http://ftpmaster.internal/ubuntu resolute/main arm64 libgmpxx4ldbl arm64 2:6.3.0+dfsg-5ubuntu1 [9944 B] 154s Get:25 http://ftpmaster.internal/ubuntu resolute/main arm64 libgmp-dev arm64 2:6.3.0+dfsg-5ubuntu1 [348 kB] 154s Get:26 http://ftpmaster.internal/ubuntu resolute/main arm64 nettle-dev arm64 3.10.2-1 [1183 kB] 154s Get:27 http://ftpmaster.internal/ubuntu resolute/main arm64 libgnutls28-dev arm64 3.8.10-3ubuntu1 [1126 kB] 155s Get:28 http://ftpmaster.internal/ubuntu resolute/main arm64 libkrb5-dev arm64 1.22.1-2 [11.9 kB] 155s Get:29 http://ftpmaster.internal/ubuntu resolute/main arm64 libldap-dev arm64 2.6.10+dfsg-1ubuntu5 [317 kB] 155s Get:30 http://ftpmaster.internal/ubuntu resolute/main arm64 libpkgconf3 arm64 1.8.1-4build1 [33.7 kB] 155s Get:31 http://ftpmaster.internal/ubuntu resolute/main arm64 pkgconf-bin arm64 1.8.1-4build1 [21.7 kB] 155s Get:32 http://ftpmaster.internal/ubuntu resolute/main arm64 pkgconf arm64 1.8.1-4build1 [16.8 kB] 155s Get:33 http://ftpmaster.internal/ubuntu resolute/main arm64 libnghttp2-dev arm64 1.64.0-1.1ubuntu1 [119 kB] 155s Get:34 http://ftpmaster.internal/ubuntu resolute/main arm64 libpsl-dev arm64 0.21.2-1.1build2 [79.1 kB] 155s Get:35 http://ftpmaster.internal/ubuntu resolute/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu2 [899 kB] 155s Get:36 http://ftpmaster.internal/ubuntu resolute/main arm64 librtmp-dev arm64 2.4+20151223.gitfa8646d.1-3 [70.6 kB] 155s Get:37 http://ftpmaster.internal/ubuntu resolute/main arm64 libssl-dev arm64 3.5.3-1ubuntu2 [3448 kB] 155s Get:38 http://ftpmaster.internal/ubuntu resolute/main arm64 libssh2-1-dev arm64 1.11.1-1build1 [292 kB] 155s Get:39 http://ftpmaster.internal/ubuntu resolute/main arm64 libzstd-dev arm64 1.5.7+dfsg-3 [349 kB] 155s Get:40 http://ftpmaster.internal/ubuntu resolute/main arm64 libcurl4-gnutls-dev arm64 8.18.0-1ubuntu1 [539 kB] 155s Get:41 http://ftpmaster.internal/ubuntu resolute/main arm64 libdeflate0 arm64 1.23-2 [46.4 kB] 155s Get:42 http://ftpmaster.internal/ubuntu resolute/main arm64 libdeflate-dev arm64 1.23-2 [53.6 kB] 155s Get:43 http://ftpmaster.internal/ubuntu resolute/universe arm64 libhtscodecs2 arm64 1.6.1-2build1 [83.8 kB] 155s Get:44 http://ftpmaster.internal/ubuntu resolute/universe arm64 libhts3t64 arm64 1.22.1+ds2-1 [442 kB] 155s Get:45 http://ftpmaster.internal/ubuntu resolute/main arm64 liblzma-dev arm64 5.8.2-2 [180 kB] 155s Get:46 http://ftpmaster.internal/ubuntu resolute/universe arm64 libhts-dev arm64 1.22.1+ds2-1 [6076 kB] 156s Get:47 http://ftpmaster.internal/ubuntu resolute/universe arm64 nim-hts-examples all 0.3.25+ds-3 [1085 kB] 156s Fetched 28.9 MB in 2s (11.7 MB/s) 156s Selecting previously unselected package nim. 156s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 89360 files and directories currently installed.) 156s Preparing to unpack .../00-nim_2.2.4-2_arm64.deb ... 156s Unpacking nim (2.2.4-2) ... 156s Selecting previously unselected package nim-hts-dev. 156s Preparing to unpack .../01-nim-hts-dev_0.3.25+ds-3_all.deb ... 156s Unpacking nim-hts-dev (0.3.25+ds-3) ... 156s Selecting previously unselected package hts-nim-tools. 156s Preparing to unpack .../02-hts-nim-tools_0.2.1-4_arm64.deb ... 156s Unpacking hts-nim-tools (0.2.1-4) ... 156s Selecting previously unselected package libc-dev-bin. 156s Preparing to unpack .../03-libc-dev-bin_2.42-2ubuntu5_arm64.deb ... 156s Unpacking libc-dev-bin (2.42-2ubuntu5) ... 157s Selecting previously unselected package linux-libc-dev:arm64. 157s Preparing to unpack .../04-linux-libc-dev_6.18.0-9.9_arm64.deb ... 157s Unpacking linux-libc-dev:arm64 (6.18.0-9.9) ... 157s Selecting previously unselected package libcrypt-dev:arm64. 157s Preparing to unpack .../05-libcrypt-dev_1%3a4.5.1-1_arm64.deb ... 157s Unpacking libcrypt-dev:arm64 (1:4.5.1-1) ... 157s Selecting previously unselected package rpcsvc-proto. 157s Preparing to unpack .../06-rpcsvc-proto_1.4.3-1build1_arm64.deb ... 157s Unpacking rpcsvc-proto (1.4.3-1build1) ... 157s Selecting previously unselected package libc6-dev:arm64. 157s Preparing to unpack .../07-libc6-dev_2.42-2ubuntu5_arm64.deb ... 157s Unpacking libc6-dev:arm64 (2.42-2ubuntu5) ... 157s Selecting previously unselected package comerr-dev:arm64. 157s Preparing to unpack .../08-comerr-dev_2.1-1.47.2-3ubuntu2_arm64.deb ... 157s Unpacking comerr-dev:arm64 (2.1-1.47.2-3ubuntu2) ... 157s Selecting previously unselected package libgssrpc4t64:arm64. 157s Preparing to unpack .../09-libgssrpc4t64_1.22.1-2_arm64.deb ... 157s Unpacking libgssrpc4t64:arm64 (1.22.1-2) ... 157s Selecting previously unselected package libkadm5clnt-mit12:arm64. 157s Preparing to unpack .../10-libkadm5clnt-mit12_1.22.1-2_arm64.deb ... 157s Unpacking libkadm5clnt-mit12:arm64 (1.22.1-2) ... 157s Selecting previously unselected package libkdb5-10t64:arm64. 157s Preparing to unpack .../11-libkdb5-10t64_1.22.1-2_arm64.deb ... 157s Unpacking libkdb5-10t64:arm64 (1.22.1-2) ... 157s Selecting previously unselected package libkadm5srv-mit12:arm64. 157s Preparing to unpack .../12-libkadm5srv-mit12_1.22.1-2_arm64.deb ... 157s Unpacking libkadm5srv-mit12:arm64 (1.22.1-2) ... 157s Selecting previously unselected package krb5-multidev:arm64. 157s Preparing to unpack .../13-krb5-multidev_1.22.1-2_arm64.deb ... 157s Unpacking krb5-multidev:arm64 (1.22.1-2) ... 157s Selecting previously unselected package libbrotli-dev:arm64. 157s Preparing to unpack .../14-libbrotli-dev_1.1.0-2build6_arm64.deb ... 157s Unpacking libbrotli-dev:arm64 (1.1.0-2build6) ... 157s Selecting previously unselected package libbz2-dev:arm64. 157s Preparing to unpack .../15-libbz2-dev_1.0.8-6build2_arm64.deb ... 157s Unpacking libbz2-dev:arm64 (1.0.8-6build2) ... 157s Selecting previously unselected package libevent-2.1-7t64:arm64. 157s Preparing to unpack .../16-libevent-2.1-7t64_2.1.12-stable-10build1_arm64.deb ... 157s Unpacking libevent-2.1-7t64:arm64 (2.1.12-stable-10build1) ... 157s Selecting previously unselected package libunbound8:arm64. 157s Preparing to unpack .../17-libunbound8_1.24.2-1ubuntu1_arm64.deb ... 157s Unpacking libunbound8:arm64 (1.24.2-1ubuntu1) ... 157s Selecting previously unselected package libgnutls-dane0t64:arm64. 157s Preparing to unpack .../18-libgnutls-dane0t64_3.8.10-3ubuntu1_arm64.deb ... 157s Unpacking libgnutls-dane0t64:arm64 (3.8.10-3ubuntu1) ... 157s Selecting previously unselected package libgnutls-openssl27t64:arm64. 157s Preparing to unpack .../19-libgnutls-openssl27t64_3.8.10-3ubuntu1_arm64.deb ... 157s Unpacking libgnutls-openssl27t64:arm64 (3.8.10-3ubuntu1) ... 157s Selecting previously unselected package libidn2-dev:arm64. 157s Preparing to unpack .../20-libidn2-dev_2.3.8-4_arm64.deb ... 157s Unpacking libidn2-dev:arm64 (2.3.8-4) ... 157s Selecting previously unselected package libp11-kit-dev:arm64. 157s Preparing to unpack .../21-libp11-kit-dev_0.25.10-1_arm64.deb ... 157s Unpacking libp11-kit-dev:arm64 (0.25.10-1) ... 157s Selecting previously unselected package libtasn1-6-dev:arm64. 157s Preparing to unpack .../22-libtasn1-6-dev_4.21.0-2_arm64.deb ... 157s Unpacking libtasn1-6-dev:arm64 (4.21.0-2) ... 157s Selecting previously unselected package libgmpxx4ldbl:arm64. 157s Preparing to unpack .../23-libgmpxx4ldbl_2%3a6.3.0+dfsg-5ubuntu1_arm64.deb ... 157s Unpacking libgmpxx4ldbl:arm64 (2:6.3.0+dfsg-5ubuntu1) ... 157s Selecting previously unselected package libgmp-dev:arm64. 158s Preparing to unpack .../24-libgmp-dev_2%3a6.3.0+dfsg-5ubuntu1_arm64.deb ... 158s Unpacking libgmp-dev:arm64 (2:6.3.0+dfsg-5ubuntu1) ... 158s Selecting previously unselected package nettle-dev:arm64. 158s Preparing to unpack .../25-nettle-dev_3.10.2-1_arm64.deb ... 158s Unpacking nettle-dev:arm64 (3.10.2-1) ... 158s Selecting previously unselected package libgnutls28-dev:arm64. 158s Preparing to unpack .../26-libgnutls28-dev_3.8.10-3ubuntu1_arm64.deb ... 158s Unpacking libgnutls28-dev:arm64 (3.8.10-3ubuntu1) ... 158s Selecting previously unselected package libkrb5-dev:arm64. 158s Preparing to unpack .../27-libkrb5-dev_1.22.1-2_arm64.deb ... 158s Unpacking libkrb5-dev:arm64 (1.22.1-2) ... 158s Selecting previously unselected package libldap-dev:arm64. 158s Preparing to unpack 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... 158s Unpacking libhts3t64:arm64 (1.22.1+ds2-1) ... 158s Selecting previously unselected package liblzma-dev:arm64. 158s Preparing to unpack .../44-liblzma-dev_5.8.2-2_arm64.deb ... 158s Unpacking liblzma-dev:arm64 (5.8.2-2) ... 159s Selecting previously unselected package libhts-dev:arm64. 159s Preparing to unpack .../45-libhts-dev_1.22.1+ds2-1_arm64.deb ... 159s Unpacking libhts-dev:arm64 (1.22.1+ds2-1) ... 159s Selecting previously unselected package nim-hts-examples. 159s Preparing to unpack .../46-nim-hts-examples_0.3.25+ds-3_all.deb ... 159s Unpacking nim-hts-examples (0.3.25+ds-3) ... 159s Setting up libhtscodecs2:arm64 (1.6.1-2build1) ... 159s Setting up libgnutls-openssl27t64:arm64 (3.8.10-3ubuntu1) ... 159s Setting up libzstd-dev:arm64 (1.5.7+dfsg-3) ... 159s Setting up libdeflate0:arm64 (1.23-2) ... 159s Setting up linux-libc-dev:arm64 (6.18.0-9.9) ... 159s Setting up libevent-2.1-7t64:arm64 (2.1.12-stable-10build1) ... 159s Setting up libpsl-dev:arm64 (0.21.2-1.1build2) ... 159s Setting up libunbound8:arm64 (1.24.2-1ubuntu1) ... 159s Setting up libpkgconf3:arm64 (1.8.1-4build1) ... 159s Setting up libgmpxx4ldbl:arm64 (2:6.3.0+dfsg-5ubuntu1) ... 159s Setting up rpcsvc-proto (1.4.3-1build1) ... 159s Setting up libgnutls-dane0t64:arm64 (3.8.10-3ubuntu1) ... 159s Setting up libgssrpc4t64:arm64 (1.22.1-2) ... 159s Setting up libldap-dev:arm64 (2.6.10+dfsg-1ubuntu5) ... 159s Setting up libssl-dev:arm64 (3.5.3-1ubuntu2) ... 159s Setting up pkgconf-bin (1.8.1-4build1) ... 159s Setting up libidn2-dev:arm64 (2.3.8-4) ... 159s Setting up liblzma-dev:arm64 (5.8.2-2) ... 159s Setting up libcrypt-dev:arm64 (1:4.5.1-1) ... 159s Setting up libhts3t64:arm64 (1.22.1+ds2-1) ... 159s Setting up nim (2.2.4-2) ... 159s Setting up libc-dev-bin (2.42-2ubuntu5) ... 159s Setting up libtasn1-6-dev:arm64 (4.21.0-2) ... 159s Setting up libdeflate-dev:arm64 (1.23-2) ... 159s Setting up libbrotli-dev:arm64 (1.1.0-2build6) ... 159s Setting up libp11-kit-dev:arm64 (0.25.10-1) ... 159s Setting up libkadm5clnt-mit12:arm64 (1.22.1-2) ... 159s Setting up nim-hts-examples (0.3.25+ds-3) ... 159s Setting up libgmp-dev:arm64 (2:6.3.0+dfsg-5ubuntu1) ... 159s Setting up nettle-dev:arm64 (3.10.2-1) ... 159s Setting up libkdb5-10t64:arm64 (1.22.1-2) ... 159s Setting up pkgconf:arm64 (1.8.1-4build1) ... 159s Setting up nim-hts-dev (0.3.25+ds-3) ... 159s Setting up libkadm5srv-mit12:arm64 (1.22.1-2) ... 159s Setting up libc6-dev:arm64 (2.42-2ubuntu5) ... 159s Setting up libbz2-dev:arm64 (1.0.8-6build2) ... 159s Setting up libgnutls28-dev:arm64 (3.8.10-3ubuntu1) ... 159s Setting up libnghttp2-dev:arm64 (1.64.0-1.1ubuntu1) ... 159s Setting up hts-nim-tools (0.2.1-4) ... 159s Setting up comerr-dev:arm64 (2.1-1.47.2-3ubuntu2) ... 159s Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu2) ... 159s Setting up krb5-multidev:arm64 (1.22.1-2) ... 159s Setting up libkrb5-dev:arm64 (1.22.1-2) ... 159s Setting up librtmp-dev:arm64 (2.4+20151223.gitfa8646d.1-3) ... 159s Setting up libssh2-1-dev:arm64 (1.11.1-1build1) ... 159s Setting up libcurl4-gnutls-dev:arm64 (8.18.0-1ubuntu1) ... 159s Setting up libhts-dev:arm64 (1.22.1+ds2-1) ... 159s Processing triggers for install-info (7.2-5) ... 159s Processing triggers for libc-bin (2.42-2ubuntu5) ... 159s Processing triggers for man-db (2.13.1-1) ... 161s autopkgtest [02:28:10]: test run-unit-test: [----------------------- 161s Test 1 161s SRR741409.55403397 163 6 32815223 60 101M = 32815450 307 AGGCAAGACTACTGGGGTTTCAGCAAAGGTAAAGATGGCTGGGGGGTGAGATGAGGGGAGAGAGTACCTGTGTCATAGCCCTGAGGGAGTCCAGAGATGAA 3I76FEC-CF:CDDBEEF?+EDAGHGIGGGBH;G?KGC)HF:@$;2@=ED?AFD@%--9?.632B+7>DFMAFDDDDGGGG6=9G+9BAED X0:i:1 X1:i:0 MD:Z:43T11T45 RG:Z:SRR741409 AM:i:37 NM:i:2 SM:i:37 MQ:i:60 XT:A:U BQ:Z:@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@GI 161s SRR741410.29215685 147 6 32815248 60 35S66M = 32814948 -365 TGAAGGATAAAGGCAAGGCTACTGGGGTTTCAGCGAAGGTAAAGATGGCTGGGTGGTAAGATGAGGGGAGAGAGTACCTGTGTCATAGCCCTGAGGGAGTC ####################################KC,3+48>+.:J32A>>D;>**5-(F81@J?@B@?-BC@3 X0:i:1 X1:i:0 XC:i:66 MD:Z:22G7T35 RG:Z:SRR741410 AM:i:37 NM:i:2 SM:i:37 MQ:i:60 XT:A:U BQ:Z:@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@ 161s SRR741410.55980768 147 6 32816034 60 101M = 32815881 -253 GGAGTAGAGATAGAAGAAGCAGCAAAGACAAGGGCAGAGACCCAGCACCACTATGCCACACACTTGATGTCAGATACCACCAGGATAGGGAAAAATCACAT CGHFDIHIIJGNNLONENIIKJKIIJJIJGJFLFJHFHFECFGIEHGFFFG@FHHGEKDJDFGFEGCED@KHEG>EIFCEFDDI7(HHHH>?EEFCEAJD3 X0:i:1 X1:i:0 MD:Z:20G64A15 RG:Z:SRR741410 AM:i:37 NM:i:2 SM:i:37 MQ:i:60 XT:A:U BQ:Z:AB@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@ 161s SRR741410.35483374 147 6 32816073 60 5S96M = 32815822 -346 CAGAGGCCCAGCACCACTATGCCACACACTTGATGTCAGATCCCACCAGGAAAGGGAAAAATCACATTCCAAATTACAAAGGAAAAGGAAAGATGGAAGAC ######DHEJB@88>4BCF7C(0BC8C7>D?D7C<7GFDE:'C8FEGF@CCEGDAGEFCDEFK>LG;DFGG>BJA?H/3C:*1CFFF*GFBF>F@G)5E-DLMEFHA?FFMKG?IB<-BCEII6+2JE######### X0:i:1 X1:i:0 XC:i:93 MD:Z:56A2C33 RG:Z:SRR741410 AM:i:29 NM:i:2 SM:i:29 MQ:i:29 XT:A:U BQ:Z:@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@ 161s ======================================= 161s PASS 162s autopkgtest [02:28:11]: test run-unit-test: -----------------------] 162s autopkgtest [02:28:11]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 162s run-unit-test PASS 163s autopkgtest [02:28:12]: @@@@@@@@@@@@@@@@@@@@ summary 163s run-unit-test PASS