0s autopkgtest [17:56:50]: starting date and time: 2025-10-18 17:56:50+0000 0s autopkgtest [17:56:50]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [17:56:50]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.ri9ckmrn/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults --apt-upgrade hhsuite --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=python3-defaults/3.13.7-2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-1.secgroup --name adt-resolute-arm64-hhsuite-20251018-175650-juju-7f2275-prod-proposed-migration-environment-2-3846569e-7827-4eca-b6dc-3812740e18f0 --image adt/ubuntu-resolute-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 4s Creating nova instance adt-resolute-arm64-hhsuite-20251018-175650-juju-7f2275-prod-proposed-migration-environment-2-3846569e-7827-4eca-b6dc-3812740e18f0 from image adt/ubuntu-resolute-arm64-server-20251018.img (UUID f7a49384-4e4d-4350-9a26-1f59236f89dd)... 83s autopkgtest [17:58:13]: testbed dpkg architecture: arm64 83s autopkgtest [17:58:13]: testbed apt version: 3.1.6ubuntu2 83s autopkgtest [17:58:13]: @@@@@@@@@@@@@@@@@@@@ test bed setup 84s autopkgtest [17:58:14]: testbed release detected to be: None 85s autopkgtest [17:58:15]: updating testbed package index (apt update) 85s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [83.3 kB] 85s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 85s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 85s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 86s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [345 kB] 86s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [15.4 kB] 86s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [28.4 kB] 86s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [5028 B] 86s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 Packages [81.1 kB] 86s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 Packages [43.8 kB] 86s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 Packages [223 kB] 86s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 Packages [5672 B] 86s Fetched 831 kB in 1s (879 kB/s) 88s Reading package lists... 89s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 89s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 90s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 90s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 92s Reading package lists... 92s Reading package lists... 92s Building dependency tree... 92s Reading state information... 93s Calculating upgrade... 93s The following packages will be upgraded: 93s apt flash-kernel gir1.2-girepository-2.0 libapt-pkg7.0 libgirepository-1.0-1 93s libpython3-stdlib lto-disabled-list python3 python3-minimal 93s 9 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 93s Need to get 2671 kB of archives. 93s After this operation, 66.6 kB of additional disk space will be used. 93s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 python3-minimal arm64 3.13.7-2 [27.8 kB] 94s Get:2 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 python3 arm64 3.13.7-2 [23.9 kB] 94s Get:3 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 libpython3-stdlib arm64 3.13.7-2 [10.6 kB] 94s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 libapt-pkg7.0 arm64 3.1.8ubuntu1 [1055 kB] 94s Get:5 http://ftpmaster.internal/ubuntu resolute/main arm64 apt arm64 3.1.8ubuntu1 [1373 kB] 94s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 libgirepository-1.0-1 arm64 1.86.0-6 [84.5 kB] 94s Get:7 http://ftpmaster.internal/ubuntu resolute/main arm64 gir1.2-girepository-2.0 arm64 1.86.0-6 [25.3 kB] 94s Get:8 http://ftpmaster.internal/ubuntu resolute/main arm64 flash-kernel arm64 3.109ubuntu7 [58.8 kB] 94s Get:9 http://ftpmaster.internal/ubuntu resolute/main arm64 lto-disabled-list all 71 [12.5 kB] 95s dpkg-preconfigure: unable to re-open stdin: No such file or directory 96s Fetched 2671 kB in 1s (2600 kB/s) 96s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83359 files and directories currently installed.) 96s Preparing to unpack .../python3-minimal_3.13.7-2_arm64.deb ... 96s Unpacking python3-minimal (3.13.7-2) over (3.13.7-1) ... 96s Setting up python3-minimal (3.13.7-2) ... 97s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83359 files and directories currently installed.) 97s Preparing to unpack .../0-python3_3.13.7-2_arm64.deb ... 97s running python pre-rtupdate hooks for python3.13... 97s Unpacking python3 (3.13.7-2) over (3.13.7-1) ... 97s Preparing to unpack .../1-libpython3-stdlib_3.13.7-2_arm64.deb ... 98s Unpacking libpython3-stdlib:arm64 (3.13.7-2) over (3.13.7-1) ... 98s Preparing to unpack .../2-libapt-pkg7.0_3.1.8ubuntu1_arm64.deb ... 98s Unpacking libapt-pkg7.0:arm64 (3.1.8ubuntu1) over (3.1.6ubuntu2) ... 98s Preparing to unpack .../3-apt_3.1.8ubuntu1_arm64.deb ... 98s Unpacking apt (3.1.8ubuntu1) over (3.1.6ubuntu2) ... 99s Preparing to unpack .../4-libgirepository-1.0-1_1.86.0-6_arm64.deb ... 99s Unpacking libgirepository-1.0-1:arm64 (1.86.0-6) over (1.84.0-1) ... 99s Preparing to unpack .../5-gir1.2-girepository-2.0_1.86.0-6_arm64.deb ... 99s Unpacking gir1.2-girepository-2.0:arm64 (1.86.0-6) over (1.84.0-1) ... 99s Preparing to unpack .../6-flash-kernel_3.109ubuntu7_arm64.deb ... 99s Unpacking flash-kernel (3.109ubuntu7) over (3.109ubuntu6) ... 99s Preparing to unpack .../7-lto-disabled-list_71_all.deb ... 99s Unpacking lto-disabled-list (71) over (69) ... 99s Setting up lto-disabled-list (71) ... 99s Setting up libgirepository-1.0-1:arm64 (1.86.0-6) ... 100s Setting up libapt-pkg7.0:arm64 (3.1.8ubuntu1) ... 100s Setting up libpython3-stdlib:arm64 (3.13.7-2) ... 100s Setting up apt (3.1.8ubuntu1) ... 101s Setting up python3 (3.13.7-2) ... 101s running python rtupdate hooks for python3.13... 101s running python post-rtupdate hooks for python3.13... 102s Setting up gir1.2-girepository-2.0:arm64 (1.86.0-6) ... 102s Setting up flash-kernel (3.109ubuntu7) ... 103s flash-kernel: deferring update (trigger activated) 103s Processing triggers for libc-bin (2.42-0ubuntu3) ... 103s Processing triggers for man-db (2.13.1-1) ... 107s Processing triggers for initramfs-tools (0.150ubuntu3) ... 107s update-initramfs: Generating /boot/initrd.img-6.17.0-5-generic 145s System running in EFI mode, skipping. 145s Processing triggers for flash-kernel (3.109ubuntu7) ... 145s System running in EFI mode, skipping. 145s autopkgtest [17:59:15]: upgrading testbed (apt dist-upgrade and autopurge) 147s Reading package lists... 148s Building dependency tree... 148s Reading state information... 149s Calculating upgrade... 150s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 151s Reading package lists... 151s Building dependency tree... 151s Reading state information... 152s Solving dependencies... 152s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 153s autopkgtest [17:59:23]: rebooting testbed after setup commands that affected boot 188s autopkgtest [17:59:58]: testbed running kernel: Linux 6.17.0-5-generic #5-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 22 09:50:31 UTC 2025 191s autopkgtest [18:00:01]: @@@@@@@@@@@@@@@@@@@@ apt-source hhsuite 195s Get:1 http://ftpmaster.internal/ubuntu resolute/universe hhsuite 3.3.0+ds-8 (dsc) [2271 B] 195s Get:2 http://ftpmaster.internal/ubuntu resolute/universe hhsuite 3.3.0+ds-8 (tar) [4775 kB] 195s Get:3 http://ftpmaster.internal/ubuntu resolute/universe hhsuite 3.3.0+ds-8 (diff) [16.9 kB] 195s gpgv: Signature made Sun Aug 13 09:54:49 2023 UTC 195s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 195s gpgv: issuer "emollier@debian.org" 195s gpgv: Can't check signature: No public key 195s dpkg-source: warning: cannot verify inline signature for ./hhsuite_3.3.0+ds-8.dsc: no acceptable signature found 196s autopkgtest [18:00:06]: testing package hhsuite version 3.3.0+ds-8 196s autopkgtest [18:00:06]: build not needed 197s autopkgtest [18:00:07]: test run-unit-test: preparing testbed 198s Reading package lists... 198s Building dependency tree... 198s Reading state information... 198s Solving dependencies... 199s The following NEW packages will be installed: 199s hhsuite hhsuite-data libgomp1 199s 0 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. 199s Need to get 10.5 MB of archives. 199s After this operation, 92.3 MB of additional disk space will be used. 199s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 libgomp1 arm64 15.2.0-5ubuntu1 [148 kB] 199s Get:2 http://ftpmaster.internal/ubuntu resolute/universe arm64 hhsuite-data all 3.3.0+ds-8 [4475 kB] 200s Get:3 http://ftpmaster.internal/ubuntu resolute/universe arm64 hhsuite arm64 3.3.0+ds-8 [5853 kB] 201s Fetched 10.5 MB in 1s (8844 kB/s) 201s Selecting previously unselected package libgomp1:arm64. 201s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83359 files and directories currently installed.) 201s Preparing to unpack .../libgomp1_15.2.0-5ubuntu1_arm64.deb ... 201s Unpacking libgomp1:arm64 (15.2.0-5ubuntu1) ... 201s Selecting previously unselected package hhsuite-data. 201s Preparing to unpack .../hhsuite-data_3.3.0+ds-8_all.deb ... 201s Unpacking hhsuite-data (3.3.0+ds-8) ... 202s Selecting previously unselected package hhsuite. 202s Preparing to unpack .../hhsuite_3.3.0+ds-8_arm64.deb ... 202s Unpacking hhsuite (3.3.0+ds-8) ... 202s Setting up hhsuite-data (3.3.0+ds-8) ... 202s Setting up libgomp1:arm64 (15.2.0-5ubuntu1) ... 202s Setting up hhsuite (3.3.0+ds-8) ... 202s Processing triggers for libc-bin (2.42-0ubuntu3) ... 202s Processing triggers for man-db (2.13.1-1) ... 205s autopkgtest [18:00:15]: test run-unit-test: [----------------------- 205s - 18:00:15.862 INFO: query.a3m is in A2M, A3M or FASTA format 205s 206s autopkgtest [18:00:16]: test run-unit-test: -----------------------] 206s autopkgtest [18:00:16]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 206s run-unit-test PASS 207s autopkgtest [18:00:17]: @@@@@@@@@@@@@@@@@@@@ summary 207s run-unit-test PASS