0s autopkgtest [11:09:27]: starting date and time: 2025-11-17 11:09:27+0000 0s autopkgtest [11:09:27]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [11:09:27]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.p0bvcp48/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults --apt-upgrade h5sparse --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=python3-defaults/3.13.7-2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-7.secgroup --name adt-resolute-arm64-h5sparse-20251117-110927-juju-7f2275-prod-proposed-migration-environment-2-f44ab1b4-d97a-4eba-973d-0e3c02b40016 --image adt/ubuntu-resolute-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 4s Creating nova instance adt-resolute-arm64-h5sparse-20251117-110927-juju-7f2275-prod-proposed-migration-environment-2-f44ab1b4-d97a-4eba-973d-0e3c02b40016 from image adt/ubuntu-resolute-arm64-server-20251117.img (UUID 1cd33fbb-18df-4c5a-b8f0-2dcb25269485)... 63s autopkgtest [11:10:30]: testbed dpkg architecture: arm64 63s autopkgtest [11:10:30]: testbed apt version: 3.1.11 64s autopkgtest [11:10:31]: @@@@@@@@@@@@@@@@@@@@ test bed setup 64s autopkgtest [11:10:31]: testbed release detected to be: None 65s autopkgtest [11:10:32]: updating testbed package index (apt update) 65s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [87.8 kB] 65s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 65s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 66s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 66s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [868 kB] 66s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [9848 B] 66s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [22.9 kB] 66s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [81.1 kB] 66s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 Packages [149 kB] 66s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 c-n-f Metadata [3084 B] 66s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 Packages [107 kB] 66s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 c-n-f Metadata [324 B] 66s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 Packages [577 kB] 66s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 c-n-f Metadata [17.8 kB] 66s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 Packages [12.5 kB] 66s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 c-n-f Metadata [576 B] 67s Fetched 1938 kB in 1s (1812 kB/s) 68s Reading package lists... 69s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 69s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 69s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 69s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 70s Reading package lists... 70s Reading package lists... 70s Building dependency tree... 70s Reading state information... 70s Calculating upgrade... 70s The following packages will be upgraded: 70s libpython3-stdlib python3 python3-minimal usbutils 71s 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 71s Need to get 144 kB of archives. 71s After this operation, 0 B of additional disk space will be used. 71s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 python3-minimal arm64 3.13.7-2 [27.8 kB] 71s Get:2 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 python3 arm64 3.13.7-2 [23.9 kB] 71s Get:3 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 libpython3-stdlib arm64 3.13.7-2 [10.6 kB] 71s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 usbutils arm64 1:019-1 [81.7 kB] 71s dpkg-preconfigure: unable to re-open stdin: No such file or directory 72s Fetched 144 kB in 0s (362 kB/s) 72s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 88137 files and directories currently installed.) 72s Preparing to unpack .../python3-minimal_3.13.7-2_arm64.deb ... 72s Unpacking python3-minimal (3.13.7-2) over (3.13.7-1) ... 72s Setting up python3-minimal (3.13.7-2) ... 72s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 88137 files and directories currently installed.) 72s Preparing to unpack .../python3_3.13.7-2_arm64.deb ... 72s running python pre-rtupdate hooks for python3.13... 72s Unpacking python3 (3.13.7-2) over (3.13.7-1) ... 72s Preparing to unpack .../libpython3-stdlib_3.13.7-2_arm64.deb ... 72s Unpacking libpython3-stdlib:arm64 (3.13.7-2) over (3.13.7-1) ... 72s Preparing to unpack .../usbutils_1%3a019-1_arm64.deb ... 72s Unpacking usbutils (1:019-1) over (1:018-2) ... 72s Setting up usbutils (1:019-1) ... 72s Setting up libpython3-stdlib:arm64 (3.13.7-2) ... 73s Setting up python3 (3.13.7-2) ... 73s running python rtupdate hooks for python3.13... 73s running python post-rtupdate hooks for python3.13... 73s Processing triggers for man-db (2.13.1-1) ... 74s autopkgtest [11:10:41]: upgrading testbed (apt dist-upgrade and autopurge) 74s Reading package lists... 74s Building dependency tree... 74s Reading state information... 74s Calculating upgrade... 75s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 75s Reading package lists... 75s Building dependency tree... 75s Reading state information... 75s Solving dependencies... 76s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 79s autopkgtest [11:10:46]: testbed running kernel: Linux 6.17.0-5-generic #5-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 22 09:50:31 UTC 2025 79s autopkgtest [11:10:46]: @@@@@@@@@@@@@@@@@@@@ apt-source h5sparse 80s Get:1 http://ftpmaster.internal/ubuntu resolute/universe h5sparse 0.1.0-8 (dsc) [2174 B] 80s Get:2 http://ftpmaster.internal/ubuntu resolute/universe h5sparse 0.1.0-8 (tar) [10.5 kB] 80s Get:3 http://ftpmaster.internal/ubuntu resolute/universe h5sparse 0.1.0-8 (diff) [4420 B] 80s gpgv: Signature made Thu Jan 16 20:35:49 2025 UTC 80s gpgv: using RSA key 8F6DE104377F3B11E741748731F3144544A1741A 80s gpgv: issuer "tchet@debian.org" 80s gpgv: Can't check signature: No public key 80s dpkg-source: warning: cannot verify inline signature for ./h5sparse_0.1.0-8.dsc: no acceptable signature found 81s autopkgtest [11:10:48]: testing package h5sparse version 0.1.0-8 81s autopkgtest [11:10:48]: build not needed 81s autopkgtest [11:10:48]: test run-unit-test: preparing testbed 81s Reading package lists... 82s Building dependency tree... 82s Reading state information... 82s Solving dependencies... 82s The following NEW packages will be installed: 82s libaec0 libblas3 libgfortran5 libhdf5-310 libhdf5-hl-310 liblapack3 liblzf1 82s libpython3.14-minimal libpython3.14-stdlib libsz2 python3-all 82s python3-decorator python3-h5py python3-h5py-serial python3-h5sparse 82s python3-iniconfig python3-numpy python3-numpy-dev python3-pluggy 82s python3-pytest python3-scipy python3.14 python3.14-minimal 82s 0 upgraded, 23 newly installed, 0 to remove and 0 not upgraded. 82s Need to get 35.2 MB of archives. 82s After this operation, 178 MB of additional disk space will be used. 82s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-numpy-dev arm64 1:2.2.4+ds-1ubuntu1 [146 kB] 83s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 libblas3 arm64 3.12.1-7 [181 kB] 83s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 libgfortran5 arm64 15.2.0-7ubuntu1 [450 kB] 83s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 liblapack3 arm64 3.12.1-7 [2300 kB] 83s Get:5 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-numpy arm64 1:2.2.4+ds-1ubuntu1 [3986 kB] 84s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 libpython3.14-minimal arm64 3.14.0-4 [903 kB] 84s Get:7 http://ftpmaster.internal/ubuntu resolute/main arm64 python3.14-minimal arm64 3.14.0-4 [2543 kB] 84s Get:8 http://ftpmaster.internal/ubuntu resolute/universe arm64 libaec0 arm64 1.1.4-2 [22.2 kB] 84s Get:9 http://ftpmaster.internal/ubuntu resolute/universe arm64 libsz2 arm64 1.1.4-2 [5258 B] 84s Get:10 http://ftpmaster.internal/ubuntu resolute/universe arm64 libhdf5-310 arm64 1.14.5+repack-4 [1286 kB] 84s Get:11 http://ftpmaster.internal/ubuntu resolute/universe arm64 libhdf5-hl-310 arm64 1.14.5+repack-4 [58.9 kB] 84s Get:12 http://ftpmaster.internal/ubuntu resolute/universe arm64 liblzf1 arm64 3.6-4 [7426 B] 84s Get:13 http://ftpmaster.internal/ubuntu resolute/main arm64 libpython3.14-stdlib arm64 3.14.0-4 [2349 kB] 84s Get:14 http://ftpmaster.internal/ubuntu resolute/main arm64 python3.14 arm64 3.14.0-4 [805 kB] 84s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 python3-all arm64 3.13.7-2 [890 B] 84s Get:16 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-decorator all 5.2.1-2 [28.1 kB] 84s Get:17 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-h5py-serial arm64 3.13.0-1ubuntu1 [1123 kB] 84s Get:18 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-h5py all 3.13.0-1ubuntu1 [8230 B] 84s Get:19 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-scipy arm64 1.15.3-1ubuntu1 [18.7 MB] 85s Get:20 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-h5sparse all 0.1.0-8 [6866 B] 85s Get:21 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-iniconfig all 2.1.0-1 [6840 B] 85s Get:22 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pluggy all 1.6.0-1 [21.0 kB] 85s Get:23 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pytest all 8.3.5-2 [252 kB] 85s Fetched 35.2 MB in 2s (14.2 MB/s) 85s Selecting previously unselected package python3-numpy-dev:arm64. 85s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 88137 files and directories currently installed.) 85s Preparing to unpack .../00-python3-numpy-dev_1%3a2.2.4+ds-1ubuntu1_arm64.deb ... 85s Unpacking python3-numpy-dev:arm64 (1:2.2.4+ds-1ubuntu1) ... 85s Selecting previously unselected package libblas3:arm64. 85s Preparing to unpack .../01-libblas3_3.12.1-7_arm64.deb ... 85s Unpacking libblas3:arm64 (3.12.1-7) ... 85s Selecting previously unselected package libgfortran5:arm64. 85s Preparing to unpack .../02-libgfortran5_15.2.0-7ubuntu1_arm64.deb ... 85s Unpacking libgfortran5:arm64 (15.2.0-7ubuntu1) ... 85s Selecting previously unselected package liblapack3:arm64. 85s Preparing to unpack .../03-liblapack3_3.12.1-7_arm64.deb ... 85s Unpacking liblapack3:arm64 (3.12.1-7) ... 85s Selecting previously unselected package python3-numpy. 85s Preparing to unpack .../04-python3-numpy_1%3a2.2.4+ds-1ubuntu1_arm64.deb ... 85s Unpacking python3-numpy (1:2.2.4+ds-1ubuntu1) ... 85s Selecting previously unselected package libpython3.14-minimal:arm64. 85s Preparing to unpack .../05-libpython3.14-minimal_3.14.0-4_arm64.deb ... 85s Unpacking libpython3.14-minimal:arm64 (3.14.0-4) ... 86s Selecting previously unselected package python3.14-minimal. 86s Preparing to unpack .../06-python3.14-minimal_3.14.0-4_arm64.deb ... 86s Unpacking python3.14-minimal (3.14.0-4) ... 86s Selecting previously unselected package libaec0:arm64. 86s Preparing to unpack .../07-libaec0_1.1.4-2_arm64.deb ... 86s Unpacking libaec0:arm64 (1.1.4-2) ... 86s Selecting previously unselected package libsz2:arm64. 86s Preparing to unpack .../08-libsz2_1.1.4-2_arm64.deb ... 86s Unpacking libsz2:arm64 (1.1.4-2) ... 86s Selecting previously unselected package libhdf5-310:arm64. 86s Preparing to unpack .../09-libhdf5-310_1.14.5+repack-4_arm64.deb ... 86s Unpacking libhdf5-310:arm64 (1.14.5+repack-4) ... 86s Selecting previously unselected package libhdf5-hl-310:arm64. 86s Preparing to unpack .../10-libhdf5-hl-310_1.14.5+repack-4_arm64.deb ... 86s Unpacking libhdf5-hl-310:arm64 (1.14.5+repack-4) ... 86s Selecting previously unselected package liblzf1:arm64. 86s Preparing to unpack .../11-liblzf1_3.6-4_arm64.deb ... 86s Unpacking liblzf1:arm64 (3.6-4) ... 86s Selecting previously unselected package libpython3.14-stdlib:arm64. 86s Preparing to unpack .../12-libpython3.14-stdlib_3.14.0-4_arm64.deb ... 86s Unpacking libpython3.14-stdlib:arm64 (3.14.0-4) ... 86s Selecting previously unselected package python3.14. 86s Preparing to unpack .../13-python3.14_3.14.0-4_arm64.deb ... 86s Unpacking python3.14 (3.14.0-4) ... 86s Selecting previously unselected package python3-all. 86s Preparing to unpack .../14-python3-all_3.13.7-2_arm64.deb ... 86s Unpacking python3-all (3.13.7-2) ... 86s Selecting previously unselected package python3-decorator. 86s Preparing to unpack .../15-python3-decorator_5.2.1-2_all.deb ... 86s Unpacking python3-decorator (5.2.1-2) ... 86s Selecting previously unselected package python3-h5py-serial. 86s Preparing to unpack .../16-python3-h5py-serial_3.13.0-1ubuntu1_arm64.deb ... 86s Unpacking python3-h5py-serial (3.13.0-1ubuntu1) ... 86s Selecting previously unselected package python3-h5py. 86s Preparing to unpack .../17-python3-h5py_3.13.0-1ubuntu1_all.deb ... 86s Unpacking python3-h5py (3.13.0-1ubuntu1) ... 86s Selecting previously unselected package python3-scipy. 86s Preparing to unpack .../18-python3-scipy_1.15.3-1ubuntu1_arm64.deb ... 86s Unpacking python3-scipy (1.15.3-1ubuntu1) ... 87s Selecting previously unselected package python3-h5sparse. 87s Preparing to unpack .../19-python3-h5sparse_0.1.0-8_all.deb ... 87s Unpacking python3-h5sparse (0.1.0-8) ... 87s Selecting previously unselected package python3-iniconfig. 87s Preparing to unpack .../20-python3-iniconfig_2.1.0-1_all.deb ... 87s Unpacking python3-iniconfig (2.1.0-1) ... 87s Selecting previously unselected package python3-pluggy. 87s Preparing to unpack .../21-python3-pluggy_1.6.0-1_all.deb ... 87s Unpacking python3-pluggy (1.6.0-1) ... 87s Selecting previously unselected package python3-pytest. 87s Preparing to unpack .../22-python3-pytest_8.3.5-2_all.deb ... 87s Unpacking python3-pytest (8.3.5-2) ... 87s Setting up python3-iniconfig (2.1.0-1) ... 87s Setting up libpython3.14-minimal:arm64 (3.14.0-4) ... 87s Setting up libaec0:arm64 (1.1.4-2) ... 87s Setting up python3-decorator (5.2.1-2) ... 87s Setting up libblas3:arm64 (3.12.1-7) ... 87s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 87s Setting up liblzf1:arm64 (3.6-4) ... 87s Setting up python3-numpy-dev:arm64 (1:2.2.4+ds-1ubuntu1) ... 87s Setting up libgfortran5:arm64 (15.2.0-7ubuntu1) ... 87s Setting up python3-pluggy (1.6.0-1) ... 88s Setting up python3.14-minimal (3.14.0-4) ... 88s Setting up libsz2:arm64 (1.1.4-2) ... 88s Setting up liblapack3:arm64 (3.12.1-7) ... 88s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 88s Setting up libpython3.14-stdlib:arm64 (3.14.0-4) ... 88s Setting up python3-pytest (8.3.5-2) ... 89s Setting up python3-numpy (1:2.2.4+ds-1ubuntu1) ... 92s Setting up libhdf5-310:arm64 (1.14.5+repack-4) ... 92s Setting up python3.14 (3.14.0-4) ... 93s Setting up libhdf5-hl-310:arm64 (1.14.5+repack-4) ... 93s Setting up python3-scipy (1.15.3-1ubuntu1) ... 98s /usr/lib/python3/dist-packages/scipy/optimize/_optimize.py:921: SyntaxWarning: 'break' in a 'finally' block 98s break 100s Setting up python3-h5py-serial (3.13.0-1ubuntu1) ... 101s Setting up python3-all (3.13.7-2) ... 101s Setting up python3-h5py (3.13.0-1ubuntu1) ... 101s Setting up python3-h5sparse (0.1.0-8) ... 101s Processing triggers for libc-bin (2.42-2ubuntu2) ... 101s Processing triggers for systemd (257.9-0ubuntu2) ... 101s Processing triggers for man-db (2.13.1-1) ... 102s autopkgtest [11:11:09]: test run-unit-test: [----------------------- 103s ============================= test session starts ============================== 103s platform linux -- Python 3.14.0, pytest-8.3.5, pluggy-1.6.0 -- /usr/bin/python3.14 103s cachedir: .pytest_cache 103s rootdir: /tmp/autopkgtest.5tfV5N/build.Shi/src 103s plugins: typeguard-4.4.2 103s collecting ... collected 0 items / 1 error 103s 103s ==================================== ERRORS ==================================== 103s ______________________ ERROR collecting h5sparse/tests.py ______________________ 103s ImportError while importing test module '/tmp/autopkgtest.5tfV5N/build.Shi/src/h5sparse/tests.py'. 103s Hint: make sure your test modules/packages have valid Python names. 103s Traceback: 103s /usr/lib/python3/dist-packages/h5py/__init__.py:24: in 103s from . import _debian_h5py_serial as _h5py 103s /usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py:25: in 103s from . import _errors 103s E ImportError: cannot import name '_errors' from partially initialized module 'h5py._debian_h5py_serial' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py) 103s 103s During handling of the above exception, another exception occurred: 103s /usr/lib/python3.14/importlib/__init__.py:88: in import_module 103s return _bootstrap._gcd_import(name[level:], package, level) 103s h5sparse/__init__.py:2: in 103s from .h5sparse import Group, File, Dataset # noqa: F401 103s h5sparse/h5sparse.py:2: in 103s import h5py 103s /usr/lib/python3/dist-packages/h5py/__init__.py:26: in 103s from . import _debian_h5py_mpi as _h5py 103s E ImportError: cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py) 103s =============================== warnings summary =============================== 103s h5sparse/__init__.py:1 103s /tmp/autopkgtest.5tfV5N/build.Shi/src/h5sparse/__init__.py:1: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html 103s import pkg_resources 103s 103s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 103s =========================== short test summary info ============================ 103s ERROR h5sparse/tests.py 103s !!!!!!!!!!!!!!!!!!!! Interrupted: 1 error during collection !!!!!!!!!!!!!!!!!!!! 103s ========================= 1 warning, 1 error in 0.29s ========================== 104s autopkgtest [11:11:11]: test run-unit-test: -----------------------] 104s autopkgtest [11:11:11]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 104s run-unit-test FAIL non-zero exit status 2 105s autopkgtest [11:11:12]: test autodep8-python3: preparing testbed 113s Creating nova instance adt-resolute-arm64-h5sparse-20251117-110927-juju-7f2275-prod-proposed-migration-environment-2-f44ab1b4-d97a-4eba-973d-0e3c02b40016 from image adt/ubuntu-resolute-arm64-server-20251117.img (UUID 1cd33fbb-18df-4c5a-b8f0-2dcb25269485)... 169s autopkgtest [11:12:16]: testbed dpkg architecture: arm64 169s autopkgtest [11:12:16]: testbed apt version: 3.1.11 170s autopkgtest [11:12:17]: @@@@@@@@@@@@@@@@@@@@ test bed setup 170s autopkgtest [11:12:17]: testbed release detected to be: resolute 171s autopkgtest [11:12:18]: updating testbed package index (apt update) 171s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [87.8 kB] 171s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 171s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 171s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 171s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [868 kB] 172s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [22.9 kB] 172s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [9848 B] 172s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [81.1 kB] 172s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 Packages [149 kB] 172s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 c-n-f Metadata [3084 B] 172s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 Packages [107 kB] 172s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 c-n-f Metadata [324 B] 172s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 Packages [577 kB] 172s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 c-n-f Metadata [17.8 kB] 172s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 Packages [12.5 kB] 172s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 c-n-f Metadata [576 B] 173s Fetched 1938 kB in 1s (1830 kB/s) 174s Reading package lists... 175s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 175s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 175s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 175s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 176s Reading package lists... 176s Reading package lists... 177s Building dependency tree... 177s Reading state information... 177s Calculating upgrade... 178s The following packages will be upgraded: 178s libpython3-stdlib python3 python3-minimal usbutils 179s 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 179s Need to get 144 kB of archives. 179s After this operation, 0 B of additional disk space will be used. 179s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 python3-minimal arm64 3.13.7-2 [27.8 kB] 179s Get:2 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 python3 arm64 3.13.7-2 [23.9 kB] 179s Get:3 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 libpython3-stdlib arm64 3.13.7-2 [10.6 kB] 179s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 usbutils arm64 1:019-1 [81.7 kB] 179s dpkg-preconfigure: unable to re-open stdin: No such file or directory 179s Fetched 144 kB in 0s (351 kB/s) 180s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 88137 files and directories currently installed.) 180s Preparing to unpack .../python3-minimal_3.13.7-2_arm64.deb ... 180s Unpacking python3-minimal (3.13.7-2) over (3.13.7-1) ... 180s Setting up python3-minimal (3.13.7-2) ... 180s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 88137 files and directories currently installed.) 180s Preparing to unpack .../python3_3.13.7-2_arm64.deb ... 180s running python pre-rtupdate hooks for python3.13... 180s Unpacking python3 (3.13.7-2) over (3.13.7-1) ... 181s Preparing to unpack .../libpython3-stdlib_3.13.7-2_arm64.deb ... 181s Unpacking libpython3-stdlib:arm64 (3.13.7-2) over (3.13.7-1) ... 181s Preparing to unpack .../usbutils_1%3a019-1_arm64.deb ... 181s Unpacking usbutils (1:019-1) over (1:018-2) ... 181s Setting up usbutils (1:019-1) ... 181s Setting up libpython3-stdlib:arm64 (3.13.7-2) ... 181s Setting up python3 (3.13.7-2) ... 181s running python rtupdate hooks for python3.13... 181s running python post-rtupdate hooks for python3.13... 181s Processing triggers for man-db (2.13.1-1) ... 182s autopkgtest [11:12:29]: upgrading testbed (apt dist-upgrade and autopurge) 183s Reading package lists... 183s Building dependency tree... 183s Reading state information... 183s Calculating upgrade... 184s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 184s Reading package lists... 184s Building dependency tree... 184s Reading state information... 185s Solving dependencies... 185s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 188s Reading package lists... 189s Building dependency tree... 189s Reading state information... 189s Solving dependencies... 190s The following NEW packages will be installed: 190s libaec0 libblas3 libgfortran5 libhdf5-310 libhdf5-hl-310 liblapack3 liblzf1 190s libpython3.14-minimal libpython3.14-stdlib libsz2 python3-all 190s python3-decorator python3-h5py python3-h5py-serial python3-h5sparse 190s python3-numpy python3-numpy-dev python3-scipy python3.14 python3.14-minimal 190s 0 upgraded, 20 newly installed, 0 to remove and 0 not upgraded. 190s Need to get 35.0 MB of archives. 190s After this operation, 176 MB of additional disk space will be used. 190s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-numpy-dev arm64 1:2.2.4+ds-1ubuntu1 [146 kB] 190s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 libblas3 arm64 3.12.1-7 [181 kB] 190s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 libgfortran5 arm64 15.2.0-7ubuntu1 [450 kB] 191s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 liblapack3 arm64 3.12.1-7 [2300 kB] 191s Get:5 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-numpy arm64 1:2.2.4+ds-1ubuntu1 [3986 kB] 192s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 libpython3.14-minimal arm64 3.14.0-4 [903 kB] 192s Get:7 http://ftpmaster.internal/ubuntu resolute/main arm64 python3.14-minimal arm64 3.14.0-4 [2543 kB] 193s Get:8 http://ftpmaster.internal/ubuntu resolute/universe arm64 libaec0 arm64 1.1.4-2 [22.2 kB] 193s Get:9 http://ftpmaster.internal/ubuntu resolute/universe arm64 libsz2 arm64 1.1.4-2 [5258 B] 193s Get:10 http://ftpmaster.internal/ubuntu resolute/universe arm64 libhdf5-310 arm64 1.14.5+repack-4 [1286 kB] 193s Get:11 http://ftpmaster.internal/ubuntu resolute/universe arm64 libhdf5-hl-310 arm64 1.14.5+repack-4 [58.9 kB] 193s Get:12 http://ftpmaster.internal/ubuntu resolute/universe arm64 liblzf1 arm64 3.6-4 [7426 B] 193s Get:13 http://ftpmaster.internal/ubuntu resolute/main arm64 libpython3.14-stdlib arm64 3.14.0-4 [2349 kB] 193s Get:14 http://ftpmaster.internal/ubuntu resolute/main arm64 python3.14 arm64 3.14.0-4 [805 kB] 193s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 python3-all arm64 3.13.7-2 [890 B] 193s Get:16 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-decorator all 5.2.1-2 [28.1 kB] 193s Get:17 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-h5py-serial arm64 3.13.0-1ubuntu1 [1123 kB] 193s Get:18 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-h5py all 3.13.0-1ubuntu1 [8230 B] 193s Get:19 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-scipy arm64 1.15.3-1ubuntu1 [18.7 MB] 194s Get:20 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-h5sparse all 0.1.0-8 [6866 B] 195s Fetched 35.0 MB in 4s (8469 kB/s) 195s Selecting previously unselected package python3-numpy-dev:arm64. 195s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 88137 files and directories currently installed.) 195s Preparing to unpack .../00-python3-numpy-dev_1%3a2.2.4+ds-1ubuntu1_arm64.deb ... 195s Unpacking python3-numpy-dev:arm64 (1:2.2.4+ds-1ubuntu1) ... 195s Selecting previously unselected package libblas3:arm64. 195s Preparing to unpack .../01-libblas3_3.12.1-7_arm64.deb ... 195s Unpacking libblas3:arm64 (3.12.1-7) ... 195s Selecting previously unselected package libgfortran5:arm64. 195s Preparing to unpack .../02-libgfortran5_15.2.0-7ubuntu1_arm64.deb ... 195s Unpacking libgfortran5:arm64 (15.2.0-7ubuntu1) ... 195s Selecting previously unselected package liblapack3:arm64. 195s Preparing to unpack .../03-liblapack3_3.12.1-7_arm64.deb ... 195s Unpacking liblapack3:arm64 (3.12.1-7) ... 195s Selecting previously unselected package python3-numpy. 195s Preparing to unpack .../04-python3-numpy_1%3a2.2.4+ds-1ubuntu1_arm64.deb ... 195s Unpacking python3-numpy (1:2.2.4+ds-1ubuntu1) ... 195s Selecting previously unselected package libpython3.14-minimal:arm64. 195s Preparing to unpack .../05-libpython3.14-minimal_3.14.0-4_arm64.deb ... 195s Unpacking libpython3.14-minimal:arm64 (3.14.0-4) ... 195s Selecting previously unselected package python3.14-minimal. 195s Preparing to unpack .../06-python3.14-minimal_3.14.0-4_arm64.deb ... 195s Unpacking python3.14-minimal (3.14.0-4) ... 195s Selecting previously unselected package libaec0:arm64. 195s Preparing to unpack .../07-libaec0_1.1.4-2_arm64.deb ... 195s Unpacking libaec0:arm64 (1.1.4-2) ... 196s Selecting previously unselected package libsz2:arm64. 196s Preparing to unpack .../08-libsz2_1.1.4-2_arm64.deb ... 196s Unpacking libsz2:arm64 (1.1.4-2) ... 196s Selecting previously unselected package libhdf5-310:arm64. 196s Preparing to unpack .../09-libhdf5-310_1.14.5+repack-4_arm64.deb ... 196s Unpacking libhdf5-310:arm64 (1.14.5+repack-4) ... 196s Selecting previously unselected package libhdf5-hl-310:arm64. 196s Preparing to unpack .../10-libhdf5-hl-310_1.14.5+repack-4_arm64.deb ... 196s Unpacking libhdf5-hl-310:arm64 (1.14.5+repack-4) ... 196s Selecting previously unselected package liblzf1:arm64. 196s Preparing to unpack .../11-liblzf1_3.6-4_arm64.deb ... 196s Unpacking liblzf1:arm64 (3.6-4) ... 196s Selecting previously unselected package libpython3.14-stdlib:arm64. 196s Preparing to unpack .../12-libpython3.14-stdlib_3.14.0-4_arm64.deb ... 196s Unpacking libpython3.14-stdlib:arm64 (3.14.0-4) ... 196s Selecting previously unselected package python3.14. 196s Preparing to unpack .../13-python3.14_3.14.0-4_arm64.deb ... 196s Unpacking python3.14 (3.14.0-4) ... 196s Selecting previously unselected package python3-all. 196s Preparing to unpack .../14-python3-all_3.13.7-2_arm64.deb ... 196s Unpacking python3-all (3.13.7-2) ... 196s Selecting previously unselected package python3-decorator. 196s Preparing to unpack .../15-python3-decorator_5.2.1-2_all.deb ... 196s Unpacking python3-decorator (5.2.1-2) ... 196s Selecting previously unselected package python3-h5py-serial. 196s Preparing to unpack .../16-python3-h5py-serial_3.13.0-1ubuntu1_arm64.deb ... 196s Unpacking python3-h5py-serial (3.13.0-1ubuntu1) ... 196s Selecting previously unselected package python3-h5py. 196s Preparing to unpack .../17-python3-h5py_3.13.0-1ubuntu1_all.deb ... 196s Unpacking python3-h5py (3.13.0-1ubuntu1) ... 196s Selecting previously unselected package python3-scipy. 196s Preparing to unpack .../18-python3-scipy_1.15.3-1ubuntu1_arm64.deb ... 196s Unpacking python3-scipy (1.15.3-1ubuntu1) ... 197s Selecting previously unselected package python3-h5sparse. 197s Preparing to unpack .../19-python3-h5sparse_0.1.0-8_all.deb ... 197s Unpacking python3-h5sparse (0.1.0-8) ... 197s Setting up libpython3.14-minimal:arm64 (3.14.0-4) ... 197s Setting up libaec0:arm64 (1.1.4-2) ... 197s Setting up python3-decorator (5.2.1-2) ... 197s Setting up libblas3:arm64 (3.12.1-7) ... 197s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 197s Setting up liblzf1:arm64 (3.6-4) ... 197s Setting up python3-numpy-dev:arm64 (1:2.2.4+ds-1ubuntu1) ... 197s Setting up libgfortran5:arm64 (15.2.0-7ubuntu1) ... 197s Setting up python3.14-minimal (3.14.0-4) ... 199s Setting up libsz2:arm64 (1.1.4-2) ... 199s Setting up liblapack3:arm64 (3.12.1-7) ... 199s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 199s Setting up libpython3.14-stdlib:arm64 (3.14.0-4) ... 199s Setting up python3-numpy (1:2.2.4+ds-1ubuntu1) ... 204s Setting up libhdf5-310:arm64 (1.14.5+repack-4) ... 204s Setting up python3.14 (3.14.0-4) ... 205s Setting up libhdf5-hl-310:arm64 (1.14.5+repack-4) ... 205s Setting up python3-scipy (1.15.3-1ubuntu1) ... 211s /usr/lib/python3/dist-packages/scipy/optimize/_optimize.py:921: SyntaxWarning: 'break' in a 'finally' block 211s break 214s Setting up python3-h5py-serial (3.13.0-1ubuntu1) ... 214s Setting up python3-all (3.13.7-2) ... 214s Setting up python3-h5py (3.13.0-1ubuntu1) ... 214s Setting up python3-h5sparse (0.1.0-8) ... 215s Processing triggers for libc-bin (2.42-2ubuntu2) ... 215s Processing triggers for systemd (257.9-0ubuntu2) ... 215s Processing triggers for man-db (2.13.1-1) ... 217s autopkgtest [11:13:04]: test autodep8-python3: set -e ; for py in $(py3versions -r 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -c "import h5sparse; print(h5sparse)" ; done 217s autopkgtest [11:13:04]: test autodep8-python3: [----------------------- 218s Testing with python3.14: 218s Traceback (most recent call last): 218s File "/usr/lib/python3/dist-packages/h5py/__init__.py", line 24, in 218s from . import _debian_h5py_serial as _h5py 218s File "/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py", line 25, in 218s from . import _errors 218s ImportError: cannot import name '_errors' from partially initialized module 'h5py._debian_h5py_serial' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py) 218s 218s During handling of the above exception, another exception occurred: 218s 218s Traceback (most recent call last): 218s File "", line 1, in 218s import h5sparse; print(h5sparse) 218s ^^^^^^^^^^^^^^^ 218s File "/usr/lib/python3/dist-packages/h5sparse/__init__.py", line 2, in 218s from .h5sparse import Group, File, Dataset # noqa: F401 218s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 218s File "/usr/lib/python3/dist-packages/h5sparse/h5sparse.py", line 2, in 218s import h5py 218s File "/usr/lib/python3/dist-packages/h5py/__init__.py", line 26, in 218s from . import _debian_h5py_mpi as _h5py 218s ImportError: cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py) 219s autopkgtest [11:13:06]: test autodep8-python3: -----------------------] 219s autodep8-python3 FAIL non-zero exit status 1 219s autopkgtest [11:13:06]: test autodep8-python3: - - - - - - - - - - results - - - - - - - - - - 220s autopkgtest [11:13:07]: @@@@@@@@@@@@@@@@@@@@ summary 220s run-unit-test FAIL non-zero exit status 2 220s autodep8-python3 FAIL non-zero exit status 1