0s autopkgtest [01:41:53]: starting date and time: 2026-02-05 01:41:53+0000 0s autopkgtest [01:41:53]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [01:41:53]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.jg8ejydn/out --timeout-copy=6000 --needs-internet=try --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc,src:chiark-tcl --apt-upgrade emmax --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=glibc/2.42-2ubuntu5 chiark-tcl/1.3.7build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-arm64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@sto01-arm64-27.secgroup --name adt-resolute-arm64-emmax-20260205-014152-juju-7f2275-prod-proposed-migration-environment-2-53407682-9a2e-4ba2-8fe9-4d51e53826a4 --image adt/ubuntu-resolute-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-autopkgtest-workers-arm64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 3s Creating nova instance adt-resolute-arm64-emmax-20260205-014152-juju-7f2275-prod-proposed-migration-environment-2-53407682-9a2e-4ba2-8fe9-4d51e53826a4 from image adt/ubuntu-resolute-arm64-server-20260204.img (UUID f58d981d-b271-4157-b9b1-fd704695563c)... 62s autopkgtest [01:42:55]: testbed dpkg architecture: arm64 62s autopkgtest [01:42:55]: testbed apt version: 3.1.14 62s autopkgtest [01:42:55]: @@@@@@@@@@@@@@@@@@@@ test bed setup 63s autopkgtest [01:42:56]: testbed release detected to be: None 63s autopkgtest [01:42:56]: updating testbed package index (apt update) 65s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 65s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 65s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 65s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 65s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1768 kB] 65s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [5260 B] 65s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [228 kB] 65s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [35.4 kB] 65s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 Packages [262 kB] 65s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 c-n-f Metadata [7248 B] 65s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 Packages [52.9 kB] 65s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 c-n-f Metadata [328 B] 65s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 Packages [1540 kB] 65s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 c-n-f Metadata [40.2 kB] 66s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 Packages [26.0 kB] 66s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 c-n-f Metadata [776 B] 69s Fetched 4091 kB in 2s (2023 kB/s) 70s Reading package lists... 72s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 72s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 72s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 72s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 73s Reading package lists... 73s Reading package lists... 74s Building dependency tree... 74s Reading state information... 74s Calculating upgrade... 74s The following packages will be upgraded: 74s libc-bin libc-gconv-modules-extra libc6 locales python3-linkify-it 74s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 74s Need to get 7881 kB of archives. 74s After this operation, 0 B of additional disk space will be used. 74s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 libc-gconv-modules-extra arm64 2.42-2ubuntu5 [1413 kB] 75s Get:2 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 libc6 arm64 2.42-2ubuntu5 [1594 kB] 75s Get:3 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 libc-bin arm64 2.42-2ubuntu5 [599 kB] 75s Get:4 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 locales all 2.42-2ubuntu5 [4255 kB] 75s Get:5 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-linkify-it all 2.0.3-1ubuntu3 [19.4 kB] 75s dpkg-preconfigure: unable to re-open stdin: No such file or directory 75s Fetched 7881 kB in 1s (13.8 MB/s) 76s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 89360 files and directories currently installed.) 76s Preparing to unpack .../libc-gconv-modules-extra_2.42-2ubuntu5_arm64.deb ... 76s Unpacking libc-gconv-modules-extra:arm64 (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 76s Setting up libc-gconv-modules-extra:arm64 (2.42-2ubuntu5) ... 76s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 89360 files and directories currently installed.) 76s Preparing to unpack .../libc6_2.42-2ubuntu5_arm64.deb ... 76s Unpacking libc6:arm64 (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 76s Setting up libc6:arm64 (2.42-2ubuntu5) ... 77s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 89360 files and directories currently installed.) 77s Preparing to unpack .../libc-bin_2.42-2ubuntu5_arm64.deb ... 77s Unpacking libc-bin (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 77s Setting up libc-bin (2.42-2ubuntu5) ... 77s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 89360 files and directories currently installed.) 77s Preparing to unpack .../locales_2.42-2ubuntu5_all.deb ... 77s Unpacking locales (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 77s Preparing to unpack .../python3-linkify-it_2.0.3-1ubuntu3_all.deb ... 77s Unpacking python3-linkify-it (2.0.3-1ubuntu3) over (2.0.3-1ubuntu2) ... 77s Setting up locales (2.42-2ubuntu5) ... 78s Generating locales (this might take a while)... 80s en_US.UTF-8... done 80s Generation complete. 80s Setting up python3-linkify-it (2.0.3-1ubuntu3) ... 81s Processing triggers for man-db (2.13.1-1) ... 82s Processing triggers for systemd (259-1ubuntu3) ... 83s autopkgtest [01:43:16]: upgrading testbed (apt dist-upgrade and autopurge) 83s Reading package lists... 83s Building dependency tree... 83s Reading state information... 83s Calculating upgrade... 84s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 84s Reading package lists... 84s Building dependency tree... 84s Reading state information... 84s Solving dependencies... 85s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 88s autopkgtest [01:43:21]: testbed running kernel: Linux 6.18.0-9-generic #9-Ubuntu SMP PREEMPT_DYNAMIC Mon Jan 12 16:41:39 UTC 2026 88s autopkgtest [01:43:21]: @@@@@@@@@@@@@@@@@@@@ apt-source emmax 93s Get:1 http://ftpmaster.internal/ubuntu resolute/universe emmax 0~beta.20100307-6 (dsc) [2258 B] 93s Get:2 http://ftpmaster.internal/ubuntu resolute/universe emmax 0~beta.20100307-6 (tar) [18.6 kB] 93s Get:3 http://ftpmaster.internal/ubuntu resolute/universe emmax 0~beta.20100307-6 (diff) [9100 B] 93s gpgv: Signature made Sun Jul 13 11:52:30 2025 UTC 93s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 93s gpgv: issuer "emollier@debian.org" 93s gpgv: Can't check signature: No public key 93s dpkg-source: warning: cannot verify inline signature for ./emmax_0~beta.20100307-6.dsc: no acceptable signature found 93s autopkgtest [01:43:26]: testing package emmax version 0~beta.20100307-6 94s autopkgtest [01:43:27]: build not needed 94s autopkgtest [01:43:27]: test run-unit-test: preparing testbed 95s Reading package lists... 95s Building dependency tree... 95s Reading state information... 95s Solving dependencies... 95s The following NEW packages will be installed: 95s emmax libblas3 libgfortran5 liblapack3 liblapacke libtmglib3 plink 96s 0 upgraded, 7 newly installed, 0 to remove and 0 not upgraded. 96s Need to get 4522 kB of archives. 96s After this operation, 13.8 MB of additional disk space will be used. 96s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 libblas3 arm64 3.12.1-7ubuntu1 [181 kB] 96s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 libgfortran5 arm64 15.2.0-12ubuntu1 [451 kB] 96s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 liblapack3 arm64 3.12.1-7ubuntu1 [2299 kB] 96s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 libtmglib3 arm64 3.12.1-7ubuntu1 [116 kB] 96s Get:5 http://ftpmaster.internal/ubuntu resolute/main arm64 liblapacke arm64 3.12.1-7ubuntu1 [417 kB] 96s Get:6 http://ftpmaster.internal/ubuntu resolute/universe arm64 emmax arm64 0~beta.20100307-6 [26.9 kB] 96s Get:7 http://ftpmaster.internal/ubuntu resolute/universe arm64 plink arm64 1.07+dfsg-5 [1031 kB] 97s Fetched 4522 kB in 1s (6401 kB/s) 97s Selecting previously unselected package libblas3:arm64. 97s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 89360 files and directories currently installed.) 97s Preparing to unpack .../0-libblas3_3.12.1-7ubuntu1_arm64.deb ... 97s Unpacking libblas3:arm64 (3.12.1-7ubuntu1) ... 97s Selecting previously unselected package libgfortran5:arm64. 97s Preparing to unpack .../1-libgfortran5_15.2.0-12ubuntu1_arm64.deb ... 97s Unpacking libgfortran5:arm64 (15.2.0-12ubuntu1) ... 97s Selecting previously unselected package liblapack3:arm64. 97s Preparing to unpack .../2-liblapack3_3.12.1-7ubuntu1_arm64.deb ... 97s Unpacking liblapack3:arm64 (3.12.1-7ubuntu1) ... 97s Selecting previously unselected package libtmglib3:arm64. 97s Preparing to unpack .../3-libtmglib3_3.12.1-7ubuntu1_arm64.deb ... 97s Unpacking libtmglib3:arm64 (3.12.1-7ubuntu1) ... 97s Selecting previously unselected package liblapacke:arm64. 97s Preparing to unpack .../4-liblapacke_3.12.1-7ubuntu1_arm64.deb ... 97s Unpacking liblapacke:arm64 (3.12.1-7ubuntu1) ... 97s Selecting previously unselected package emmax. 97s Preparing to unpack .../5-emmax_0~beta.20100307-6_arm64.deb ... 97s Unpacking emmax (0~beta.20100307-6) ... 97s Selecting previously unselected package plink. 97s Preparing to unpack .../6-plink_1.07+dfsg-5_arm64.deb ... 97s Unpacking plink (1.07+dfsg-5) ... 97s Setting up libblas3:arm64 (3.12.1-7ubuntu1) ... 97s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 97s Setting up libgfortran5:arm64 (15.2.0-12ubuntu1) ... 97s Setting up plink (1.07+dfsg-5) ... 97s Setting up liblapack3:arm64 (3.12.1-7ubuntu1) ... 97s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 97s Setting up libtmglib3:arm64 (3.12.1-7ubuntu1) ... 97s Setting up liblapacke:arm64 (3.12.1-7ubuntu1) ... 97s Setting up emmax (0~beta.20100307-6) ... 97s Processing triggers for man-db (2.13.1-1) ... 97s Processing triggers for libc-bin (2.42-2ubuntu5) ... 98s autopkgtest [01:43:31]: test run-unit-test: [----------------------- 99s 99s @----------------------------------------------------------@ 99s | PLINK! | v1.07 | 10/Aug/2009 | 99s |----------------------------------------------------------| 99s | (C) 2009 Shaun Purcell, GNU General Public License, v2 | 99s |----------------------------------------------------------| 99s | For documentation, citation & bug-report instructions: | 99s | http://pngu.mgh.harvard.edu/purcell/plink/ | 99s @----------------------------------------------------------@ 99s 99s Skipping web check... [ --noweb ] 99s Writing this text to log file [ test.log ] 99s Analysis started: Thu Feb 5 01:43:32 2026 99s 99s Options in effect: 99s --noweb 99s --file test 99s --recode12 99s --output-missing-genotype 0 99s --transpose 99s --out test 99s 99s 2 (of 2) markers to be included from [ test.map ] 99s 6 individuals read from [ test.ped ] 99s 6 individuals with nonmissing phenotypes 99s Assuming a disease phenotype (1=unaff, 2=aff, 0=miss) 99s Missing phenotype value is also -9 99s 3 cases, 3 controls and 0 missing 99s 6 males, 0 females, and 0 of unspecified sex 99s Before frequency and genotyping pruning, there are 2 SNPs 99s 6 founders and 0 non-founders found 99s Total genotyping rate in remaining individuals is 1 99s 0 SNPs failed missingness test ( GENO > 1 ) 99s 0 SNPs failed frequency test ( MAF < 0 ) 99s After frequency and genotyping pruning, there are 2 SNPs 99s After filtering, 3 cases, 3 controls and 0 missing 99s After filtering, 6 males, 0 females, and 0 of unspecified sex 99s Writing transposed ped file to [ test.tped ] 99s Writing family information to [ test.tfam ] 99s 99s Analysis finished: Thu Feb 5 01:43:32 2026 99s 99s Running Tests 99s Test 1 99s 99s Reading TFAM file test.tfam .... 99s 99s Reading TPED file test.tped .... 99s Reading 0 SNPs 99s Printing the kinship matrix to file 99s 99s Reading TFAM file test.tfam .... 99s 99s 99s Reading kinship file test.BN.kinf... 99s 99s 6 rows and 6 columns were observed with 0 missing values. 99s 99s 99s Reading the phenotype file test.emmax_phenotypes... 99s 99s 6 rows and 1 columns were observed with 0 missing values 99s 99s nmiss = 0 , mphenoflag = 0 99s 99s No covariates were found... using intercept only 99s 99s File reading - elapsed CPU time is 0.000271 99s 99s Test 2 99s test.emmax.ps: OK 99s evals[0] = 0.000000, evals[1] = 1.000000, evals[n-1] = 2.941379 99s k = 5, n-q = 5 99s eRvals[0] = 0.000000, eRvals[n-q-1] = 1.941379, eRvals[n-q] = 0.000000 99s eigen_R - elapsed CPU time is 0.004786 99s etas[0] = -0.138009, lambdas[0] = 0.000000 99s etas[1] = 0.279653, lambdas[1] = 0.000000 99s etas[2] = -0.434122, lambdas[2] = 0.000000 99s etas[3] = -1.076217, lambdas[3] = 1.390764 99s etas[4] = -0.236732, lambdas[4] = 1.941379 99s 0 22018.257738 18025.554634 -10.436184 99s 99s 1 18025.554634 14756.603367 -10.236267 99s 99s 2 14756.603367 12080.210868 -10.036367 99s 99s 3 12080.210868 9888.965064 -9.836490 99s 99s 4 9888.965064 8094.924207 -9.636639 99s 99s 5 8094.924207 6626.087568 -9.436822 99s 99s 6 6626.087568 5423.505863 -9.237045 99s 99s 7 5423.505863 4438.915457 -9.037317 99s 99s 8 4438.915457 3632.801410 -8.837649 99s 99s 9 3632.801410 2972.811620 -8.638055 99s 99s 10 2972.811620 2432.458439 -8.438550 99s 99s 11 2432.458439 1990.055632 -8.239155 99s 99s 12 1990.055632 1627.848047 -8.039894 99s 99s 13 1627.848047 1331.299038 -7.840796 99s 99s 14 1331.299038 1088.507059 -7.641896 99s 99s 15 1088.507059 889.728021 -7.443240 99s 99s 16 889.728021 726.984222 -7.244880 99s 99s 17 726.984222 593.744175 -7.046881 99s 99s 18 593.744175 484.660477 -6.849323 99s 99s 19 484.660477 395.355199 -6.652300 99s 99s 20 395.355199 322.244175 -6.455931 99s 99s 21 322.244175 262.393159 -6.260357 99s 99s 22 262.393159 213.400052 -6.065749 99s 99s 23 213.400052 173.298491 -5.872315 99s 99s 24 173.298491 140.478912 -5.680305 99s 99s 25 140.478912 113.623936 -5.490020 99s 99s 26 113.623936 91.655465 -5.301821 99s 99s 27 91.655465 73.691370 -5.116138 99s 99s 28 73.691370 59.010027 -4.933484 99s 99s 29 59.010027 47.021271 -4.754462 99s 99s 30 47.021271 37.242592 -4.579783 99s 99s 31 37.242592 29.279612 -4.410267 99s 99s 32 29.279612 22.810053 -4.246860 99s 99s 33 22.810053 17.570543 -4.090633 99s 99s 34 17.570543 13.345722 -3.942779 99s 99s 35 13.345722 9.959235 -3.804597 99s 99s 36 9.959235 7.266243 -3.677472 99s 99s 37 7.266243 5.147220 -3.562823 99s 99s 38 5.147220 3.502813 -3.462051 99s 99s 39 3.502813 2.249657 -3.376452 99s 99s 40 2.249657 1.317042 -3.307126 99s 99s 41 1.317042 0.644369 -3.254875 99s 99s 42 0.644369 0.179318 -3.220102 99s 99s 43 0.179318 -0.123364 -3.202722 99s 99s 44 -0.123364 -0.302600 -3.202114 99s 99s 45 -0.302600 -0.391402 -3.217103 99s 99s 46 -0.391402 -0.417145 -3.246000 99s 99s 47 -0.417145 -0.401842 -3.286683 99s 99s 48 -0.401842 -0.362510 -3.336729 99s 99s 49 -0.362510 -0.311679 -3.393560 99s 99s 50 -0.311679 -0.258015 -3.454610 99s 99s 51 -0.258015 -0.207024 -3.517470 99s 99s 52 -0.207024 -0.161777 -3.580015 99s 99s 53 -0.161777 -0.123578 -3.640489 99s 99s 54 -0.123578 -0.092560 -3.697547 99s 99s 55 -0.092560 -0.068157 -3.750255 99s 99s 56 -0.068157 -0.049454 -3.798063 99s 99s 57 -0.049454 -0.035431 -3.840743 99s 99s 58 -0.035431 -0.025110 -3.878327 99s 99s 59 -0.025110 -0.017632 -3.911038 99s 99s 60 -0.017632 -0.012285 -3.939222 99s 99s 61 -0.012285 -0.008503 -3.963300 99s 99s 62 -0.008503 -0.005853 -3.983722 99s 99s 63 -0.005853 -0.004010 -4.000940 99s 99s 64 -0.004010 -0.002737 -4.015382 99s 99s 65 -0.002737 -0.001862 -4.027444 99s 99s 66 -0.001862 -0.001264 -4.037485 99s 99s 67 -0.001264 -0.000856 -4.045817 99s 99s 68 -0.000856 -0.000578 -4.052716 99s 99s 69 -0.000578 -0.000390 -4.058416 99s 99s 70 -0.000390 -0.000263 -4.063118 99s 99s 71 -0.000263 -0.000177 -4.066992 99s 99s 72 -0.000177 -0.000119 -4.070180 99s 99s 73 -0.000119 -0.000080 -4.072800 99s 99s 74 -0.000080 -0.000054 -4.074953 99s 99s 75 -0.000054 -0.000036 -4.076721 99s 99s 76 -0.000036 -0.000024 -4.078172 99s 99s 77 -0.000024 -0.000016 -4.079361 99s 99s 78 -0.000016 -0.000011 -4.080337 99s 99s 79 -0.000011 -0.000007 -4.081137 99s 99s 80 -0.000007 -0.000005 -4.081792 99s 99s 81 -0.000005 -0.000003 -4.082330 99s 99s 82 -0.000003 -0.000002 -4.082770 99s 99s 83 -0.000002 -0.000001 -4.083130 99s 99s 84 -0.000001 -0.000001 -4.083425 99s 99s 85 -0.000001 -0.000001 -4.083667 99s 99s 86 -0.000001 -0.000000 -4.083865 99s 99s 87 -0.000000 -0.000000 -4.084028 99s 99s 88 -0.000000 -0.000000 -4.084160 99s 99s 89 -0.000000 -0.000000 -4.084269 99s 99s 90 -0.000000 -0.000000 -4.084358 99s 99s 91 -0.000000 -0.000000 -4.084431 99s 99s 92 -0.000000 -0.000000 -4.084491 99s 99s 93 -0.000000 -0.000000 -4.084540 99s 99s 94 -0.000000 -0.000000 -4.084580 99s 99s 95 -0.000000 -0.000000 -4.084613 99s 99s 96 -0.000000 -0.000000 -4.084639 99s 99s 97 -0.000000 -0.000000 -4.084661 99s 99s 98 -0.000000 -0.000000 -4.084679 99s 99s 99 -0.000000 -0.000000 -4.084694 99s 99s REMLE (delta=0.274428, REML=-3.200372, REML0=-4.084761)- elapsed CPU time is 0.000312 99s eigen_L - elapsed CPU time is 0.000012 99s 99s 99s Reading TPED file test... 99s 99s Reading 0-th SNP and testing association.... 99s 99s GLS association - elapsed CPU time is 0.000236 99s 99s Breakdown for input file parsing : 0.000045 99s 99s matrix computation : 0.000002 99s 99s p-value computation : 0.000002 99s 99s PASS 99s autopkgtest [01:43:32]: test run-unit-test: -----------------------] 99s autopkgtest [01:43:32]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 99s run-unit-test PASS 100s autopkgtest [01:43:33]: @@@@@@@@@@@@@@@@@@@@ summary 100s run-unit-test PASS