0s autopkgtest [22:52:44]: starting date and time: 2025-10-30 22:52:44+0000
  0s autopkgtest [22:52:44]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op
  0s autopkgtest [22:52:44]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.zm2uopbu/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:snakeyaml --apt-upgrade drop-seq --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=snakeyaml/2.5+ds-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-arm64-17.secgroup --name adt-resolute-arm64-drop-seq-20251030-225244-juju-7f2275-prod-proposed-migration-environment-20-d332d1fd-0ab1-412b-bb33-151efe2e19b7 --image adt/ubuntu-resolute-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/
  3s Creating nova instance adt-resolute-arm64-drop-seq-20251030-225244-juju-7f2275-prod-proposed-migration-environment-20-d332d1fd-0ab1-412b-bb33-151efe2e19b7 from image adt/ubuntu-resolute-arm64-server-20251030.img (UUID b31f7398-ba19-41c6-b21b-fc9dfd412991)...
 56s autopkgtest [22:53:40]: testbed dpkg architecture: arm64
 56s autopkgtest [22:53:40]: testbed apt version: 3.1.11
 57s autopkgtest [22:53:41]: @@@@@@@@@@@@@@@@@@@@ test bed setup
 57s autopkgtest [22:53:41]: testbed release detected to be: None
 58s autopkgtest [22:53:42]: updating testbed package index (apt update)
 58s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [87.8 kB]
 59s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease
 59s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease
 59s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease
 59s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [5856 B]
 59s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [3669 kB]
 60s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [206 kB]
 60s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [70.5 kB]
 60s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 Packages [276 kB]
 60s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 c-n-f Metadata [5720 B]
 60s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 Packages [44.3 kB]
 60s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 c-n-f Metadata [324 B]
 60s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 Packages [2529 kB]
 60s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 c-n-f Metadata [66.4 kB]
 60s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 Packages [42.0 kB]
 60s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 c-n-f Metadata [1616 B]
 62s Fetched 7005 kB in 3s (2731 kB/s)
 63s Reading package lists...
 64s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease
 64s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease
 64s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease
 64s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease
 66s Reading package lists...
 66s Reading package lists...
 66s Building dependency tree...
 66s Reading state information...
 67s Calculating upgrade...
 68s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 68s autopkgtest [22:53:52]: upgrading testbed (apt dist-upgrade and autopurge)
 68s Reading package lists...
 68s Building dependency tree...
 68s Reading state information...
 69s Calculating upgrade...
 70s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 70s Reading package lists...
 70s Building dependency tree...
 70s Reading state information...
 71s Solving dependencies...
 71s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 74s autopkgtest [22:53:58]: testbed running kernel: Linux 6.17.0-5-generic #5-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 22 09:50:31 UTC 2025
 74s autopkgtest [22:53:58]: @@@@@@@@@@@@@@@@@@@@ apt-source drop-seq
 86s Get:1 http://ftpmaster.internal/ubuntu resolute/universe drop-seq 3.0.2+dfsg-1 (dsc) [2404 B]
 86s Get:2 http://ftpmaster.internal/ubuntu resolute/universe drop-seq 3.0.2+dfsg-1 (tar) [148 MB]
 86s Get:3 http://ftpmaster.internal/ubuntu resolute/universe drop-seq 3.0.2+dfsg-1 (diff) [65.9 kB]
 86s gpgv: Signature made Sun Sep 29 21:11:38 2024 UTC
 86s gpgv:                using RSA key 33CB284313E90BD27DCB4523600316A6DC277476
 86s gpgv: Can't check signature: No public key
 86s dpkg-source: warning: cannot verify inline signature for ./drop-seq_3.0.2+dfsg-1.dsc: no acceptable signature found
 90s autopkgtest [22:54:14]: testing package drop-seq version 3.0.2+dfsg-1
 90s autopkgtest [22:54:14]: build not needed
 97s autopkgtest [22:54:21]: test run-unit-test: preparing testbed
 97s Reading package lists...
 97s Building dependency tree...
 97s Reading state information...
 97s Solving dependencies...
 98s The following NEW packages will be installed:
 98s   adwaita-icon-theme ant ant-optional at-spi2-common ca-certificates-java
 98s   dconf-gsettings-backend dconf-service default-jre default-jre-headless
 98s   drop-seq-testdata drop-seq-tools fontconfig fontconfig-config
 98s   fonts-dejavu-core fonts-dejavu-mono gtk-update-icon-cache hicolor-icon-theme
 98s   java-common java-wrappers junit4 libactivation-java libantlr4-runtime-java
 98s   libaopalliance-java libapache-pom-java libapfloat-java libargs4j-java
 98s   libasm-java libasound2-data libasound2t64 libatinject-jsr330-api-java
 98s   libatk-bridge2.0-0t64 libatk1.0-0t64 libatspi2.0-0t64 libavahi-client3
 98s   libavahi-common-data libavahi-common3 libbarclay-java libbiojava6-java
 98s   libcairo-gobject2 libcairo2 libcdi-api-java libciftools-java
 98s   libcodemodel-java libcolord2 libcommons-beanutils-java libcommons-cli-java
 98s   libcommons-codec-java libcommons-collections3-java
 98s   libcommons-collections4-java libcommons-compress-java libcommons-exec-java
 98s   libcommons-io-java libcommons-jexl2-java libcommons-lang-java
 98s   libcommons-lang3-java libcommons-logging-java libcommons-math-java
 98s   libcommons-math3-java libcommons-parent-java libcommons-text-java
 98s   libcups2t64 libdatrie1 libdconf1 libdeflate0 libdom4j-java libdrm-amdgpu1
 98s   libdtd-parser-java libepoxy0 liberror-prone-java libexec-maven-plugin-java
 98s   libezmorph-java libfastinfoset-java libfastutil-java libfontconfig1
 98s   libfreemarker-java libgatk-native-bindings-java libgbm1 libgdk-pixbuf-2.0-0
 98s   libgdk-pixbuf2.0-common libgeronimo-annotation-1.3-spec-java
 98s   libgeronimo-interceptor-3.0-spec-java libgif7 libgkl-java libgl1
 98s   libgl1-mesa-dri libglvnd0 libglx-mesa0 libglx0 libgoogle-gson-java
 98s   libgraphite2-3 libgtk-3-0t64 libgtk-3-common libguava-java libguice-java
 98s   libhamcrest-java libharfbuzz0b libhts3t64 libhtscodecs2 libhtsjdk-java
 98s   libhttpclient-java libhttpcore-java libinchi1.07 libistack-commons-java
 98s   libitext5-java libjackson2-annotations-java libjackson2-core-java
 98s   libjackson2-databind-java libjaxb-api-java libjaxb-java libjaxen-java
 98s   libjbig0 libjgrapht-java libjgraphx-java libjheaps-java libjmol-java
 98s   libjni-inchi-java libjni-inchi-jni libjoptsimple-java libjpeg-turbo8
 98s   libjpeg8 libjson-java libjson-simple-java libjsoup-java libjsr305-java
 98s   libla4j-java liblcms2-2 liblerc4 liblightcouch-java liblog4j1.2-java
 98s   liblog4j2-java libmaven-archiver-java libmaven-compiler-plugin-java
 98s   libmaven-file-management-java libmaven-jar-plugin-java libmaven-parent-java
 98s   libmaven-resolver-java libmaven-shared-incremental-java
 98s   libmaven-shared-io-java libmaven-shared-utils-java libmaven3-core-java
 98s   libmbedcrypto16 libmbedtls21 libmbedx509-7 libmmtf-java libmongodb-java
 98s   libmsgpack-java libnaga-java libncbi-ngs3 libncbi-vdb3 libngs-java
 98s   libngs-jni libnspr4 libnss3 libpango-1.0-0 libpangocairo-1.0-0
 98s   libpangoft2-1.0-0 libpcsclite1 libpicard-java libpixman-1-0
 98s   libplexus-archiver-java libplexus-cipher-java libplexus-classworlds-java
 98s   libplexus-compiler-java libplexus-component-annotations-java
 98s   libplexus-container-default-java libplexus-interpolation-java
 98s   libplexus-io-java libplexus-languages-java libplexus-sec-dispatcher-java
 98s   libplexus-utils2-java libqdox2-java librelaxng-datatype-java librhino-java
 98s   librngom-java libsharpyuv0 libsisu-inject-java libsisu-plexus-java
 98s   libslf4j-java libsnappy-java libsnappy-jni libsnappy1v5 libstax-ex-java
 98s   libstreambuffer-java libthai-data libthai0 libtiff6 libtxw2-java
 98s   libvecmath-java libvulkan1 libwagon-http-java libwagon-provider-api-java
 98s   libwayland-client0 libwayland-cursor0 libwayland-egl1 libwebp7 libx11-xcb1
 98s   libxbean-reflect-java libxcb-dri3-0 libxcb-glx0 libxcb-present0
 98s   libxcb-randr0 libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0
 98s   libxcomposite1 libxcursor1 libxdamage1 libxerces2-java libxfixes3 libxi6
 98s   libxinerama1 libxml-commons-external-java libxml-commons-resolver1.1-java
 98s   libxom-java libxrandr2 libxrender1 libxshmfence1 libxsom-java libxtst6
 98s   libxxf86vm1 libxz-java libyaml-snake-java mesa-libgallium ncbi-vdb-data
 98s   openjdk-21-jre openjdk-21-jre-headless picard-tools samtools unzip
 98s   x11-common
 98s 0 upgraded, 231 newly installed, 0 to remove and 0 not upgraded.
 98s Need to get 308 MB of archives.
 98s After this operation, 590 MB of additional disk space will be used.
 98s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 libgdk-pixbuf2.0-common all 2.44.4+dfsg-1 [8584 B]
 98s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg-turbo8 arm64 2.1.5-4ubuntu2 [165 kB]
 98s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B]
 98s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 libdeflate0 arm64 1.23-2 [46.4 kB]
 98s Get:5 http://ftpmaster.internal/ubuntu resolute/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB]
 99s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB]
 99s Get:7 http://ftpmaster.internal/ubuntu resolute/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB]
 99s Get:8 http://ftpmaster.internal/ubuntu resolute/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB]
 99s Get:9 http://ftpmaster.internal/ubuntu resolute/main arm64 libtiff6 arm64 4.7.0-3ubuntu3 [196 kB]
 99s Get:10 http://ftpmaster.internal/ubuntu resolute/main arm64 libgdk-pixbuf-2.0-0 arm64 2.44.4+dfsg-1 [149 kB]
 99s Get:11 http://ftpmaster.internal/ubuntu resolute/main arm64 gtk-update-icon-cache arm64 4.20.2+ds-1 [54.4 kB]
 99s Get:12 http://ftpmaster.internal/ubuntu resolute/main arm64 hicolor-icon-theme all 0.18-2 [13.3 kB]
 99s Get:13 http://ftpmaster.internal/ubuntu resolute/main arm64 adwaita-icon-theme all 49.0-1 [581 kB]
 99s Get:14 http://ftpmaster.internal/ubuntu resolute/main arm64 ca-certificates-java all 20240118 [11.6 kB]
 99s Get:15 http://ftpmaster.internal/ubuntu resolute/main arm64 java-common all 0.76 [6852 B]
 99s Get:16 http://ftpmaster.internal/ubuntu resolute/main arm64 liblcms2-2 arm64 2.16-2 [170 kB]
 99s Get:17 http://ftpmaster.internal/ubuntu resolute/main arm64 libnspr4 arm64 2:4.36-1ubuntu2 [115 kB]
 99s Get:18 http://ftpmaster.internal/ubuntu resolute/main arm64 libnss3 arm64 2:3.114-1 [1453 kB]
 99s Get:19 http://ftpmaster.internal/ubuntu resolute/main arm64 libpcsclite1 arm64 2.3.3-1 [24.7 kB]
 99s Get:20 http://ftpmaster.internal/ubuntu resolute/main arm64 openjdk-21-jre-headless arm64 21.0.9+10-1 [45.9 MB]
101s Get:21 http://ftpmaster.internal/ubuntu resolute/main arm64 default-jre-headless arm64 2:1.21-76 [3176 B]
101s Get:22 http://ftpmaster.internal/ubuntu resolute/universe arm64 ant all 1.10.15-1 [2148 kB]
101s Get:23 http://ftpmaster.internal/ubuntu resolute/universe arm64 ant-optional all 1.10.15-1 [452 kB]
101s Get:24 http://ftpmaster.internal/ubuntu resolute/main arm64 at-spi2-common all 2.57.1-1 [9432 B]
101s Get:25 http://ftpmaster.internal/ubuntu resolute/main arm64 libdconf1 arm64 0.49.0-1 [40.6 kB]
101s Get:26 http://ftpmaster.internal/ubuntu resolute/main arm64 dconf-service arm64 0.49.0-1 [27.1 kB]
101s Get:27 http://ftpmaster.internal/ubuntu resolute/main arm64 dconf-gsettings-backend arm64 0.49.0-1 [21.9 kB]
101s Get:28 http://ftpmaster.internal/ubuntu resolute/main arm64 libatk1.0-0t64 arm64 2.57.1-1 [55.5 kB]
101s Get:29 http://ftpmaster.internal/ubuntu resolute/main arm64 libxi6 arm64 2:1.8.2-1 [32.4 kB]
101s Get:30 http://ftpmaster.internal/ubuntu resolute/main arm64 libatspi2.0-0t64 arm64 2.57.1-1 [84.7 kB]
101s Get:31 http://ftpmaster.internal/ubuntu resolute/main arm64 libatk-bridge2.0-0t64 arm64 2.57.1-1 [66.0 kB]
101s Get:32 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB]
101s Get:33 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-core all 2.37-8 [835 kB]
101s Get:34 http://ftpmaster.internal/ubuntu resolute/main arm64 fontconfig-config arm64 2.15.0-2.3ubuntu1 [38.1 kB]
101s Get:35 http://ftpmaster.internal/ubuntu resolute/main arm64 libfontconfig1 arm64 2.15.0-2.3ubuntu1 [144 kB]
101s Get:36 http://ftpmaster.internal/ubuntu resolute/main arm64 libpixman-1-0 arm64 0.44.0-3 [197 kB]
101s Get:37 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-render0 arm64 1.17.0-2build1 [18.1 kB]
101s Get:38 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-shm0 arm64 1.17.0-2build1 [6234 B]
101s Get:39 http://ftpmaster.internal/ubuntu resolute/main arm64 libxrender1 arm64 1:0.9.12-1 [19.5 kB]
101s Get:40 http://ftpmaster.internal/ubuntu resolute/main arm64 libcairo2 arm64 1.18.4-1build1 [592 kB]
101s Get:41 http://ftpmaster.internal/ubuntu resolute/main arm64 libcairo-gobject2 arm64 1.18.4-1build1 [128 kB]
101s Get:42 http://ftpmaster.internal/ubuntu resolute/main arm64 libcolord2 arm64 1.4.7-3build1 [148 kB]
101s Get:43 http://ftpmaster.internal/ubuntu resolute/main arm64 libavahi-common-data arm64 0.8-16ubuntu3 [31.1 kB]
101s Get:44 http://ftpmaster.internal/ubuntu resolute/main arm64 libavahi-common3 arm64 0.8-16ubuntu3 [24.5 kB]
101s Get:45 http://ftpmaster.internal/ubuntu resolute/main arm64 libavahi-client3 arm64 0.8-16ubuntu3 [28.4 kB]
101s Get:46 http://ftpmaster.internal/ubuntu resolute/main arm64 libcups2t64 arm64 2.4.12-0ubuntu3 [269 kB]
101s Get:47 http://ftpmaster.internal/ubuntu resolute/main arm64 libepoxy0 arm64 1.5.10-2 [236 kB]
101s Get:48 http://ftpmaster.internal/ubuntu resolute/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB]
101s Get:49 http://ftpmaster.internal/ubuntu resolute/main arm64 libharfbuzz0b arm64 12.1.0-1 [523 kB]
101s Get:50 http://ftpmaster.internal/ubuntu resolute/main arm64 fontconfig arm64 2.15.0-2.3ubuntu1 [191 kB]
101s Get:51 http://ftpmaster.internal/ubuntu resolute/main arm64 libthai-data all 0.1.29-2build1 [158 kB]
101s Get:52 http://ftpmaster.internal/ubuntu resolute/main arm64 libdatrie1 arm64 0.2.13-4 [19.1 kB]
101s Get:53 http://ftpmaster.internal/ubuntu resolute/main arm64 libthai0 arm64 0.1.29-2build1 [18.2 kB]
101s Get:54 http://ftpmaster.internal/ubuntu resolute/main arm64 libpango-1.0-0 arm64 1.56.3-2 [237 kB]
101s Get:55 http://ftpmaster.internal/ubuntu resolute/main arm64 libpangoft2-1.0-0 arm64 1.56.3-2 [50.2 kB]
101s Get:56 http://ftpmaster.internal/ubuntu resolute/main arm64 libpangocairo-1.0-0 arm64 1.56.3-2 [27.7 kB]
101s Get:57 http://ftpmaster.internal/ubuntu resolute/main arm64 libwayland-client0 arm64 1.24.0-1build1 [28.9 kB]
101s Get:58 http://ftpmaster.internal/ubuntu resolute/main arm64 libwayland-cursor0 arm64 1.24.0-1build1 [11.1 kB]
101s Get:59 http://ftpmaster.internal/ubuntu resolute/main arm64 libwayland-egl1 arm64 1.24.0-1build1 [6500 B]
101s Get:60 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcomposite1 arm64 1:0.4.6-1 [6626 B]
101s Get:61 http://ftpmaster.internal/ubuntu resolute/main arm64 libxfixes3 arm64 1:6.0.0-2build1 [11.2 kB]
101s Get:62 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcursor1 arm64 1:1.2.3-1 [22.2 kB]
101s Get:63 http://ftpmaster.internal/ubuntu resolute/main arm64 libxdamage1 arm64 1:1.1.6-1build1 [6236 B]
101s Get:64 http://ftpmaster.internal/ubuntu resolute/main arm64 libxinerama1 arm64 2:1.1.4-3build1 [6394 B]
101s Get:65 http://ftpmaster.internal/ubuntu resolute/main arm64 libxrandr2 arm64 2:1.5.4-1 [19.6 kB]
101s Get:66 http://ftpmaster.internal/ubuntu resolute/main arm64 libgtk-3-common all 3.24.50-1ubuntu2 [1425 kB]
101s Get:67 http://ftpmaster.internal/ubuntu resolute/main arm64 libgtk-3-0t64 arm64 3.24.50-1ubuntu2 [3229 kB]
101s Get:68 http://ftpmaster.internal/ubuntu resolute/main arm64 libglvnd0 arm64 1.7.0-1build2 [59.2 kB]
101s Get:69 http://ftpmaster.internal/ubuntu resolute/main arm64 libx11-xcb1 arm64 2:1.8.12-1build1 [8216 B]
101s Get:70 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-dri3-0 arm64 1.17.0-2build1 [8120 B]
101s Get:71 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-glx0 arm64 1.17.0-2build1 [27.8 kB]
101s Get:72 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-present0 arm64 1.17.0-2build1 [6560 B]
101s Get:73 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-xfixes0 arm64 1.17.0-2build1 [11.4 kB]
101s Get:74 http://ftpmaster.internal/ubuntu resolute/main arm64 libxxf86vm1 arm64 1:1.1.4-1build4 [9130 B]
101s Get:75 http://ftpmaster.internal/ubuntu resolute/main arm64 libdrm-amdgpu1 arm64 2.4.127-1ubuntu1 [23.9 kB]
101s Get:76 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-randr0 arm64 1.17.0-2build1 [20.2 kB]
101s Get:77 http://ftpmaster.internal/ubuntu resolute/main arm64 libxcb-sync1 arm64 1.17.0-2build1 [10.4 kB]
101s Get:78 http://ftpmaster.internal/ubuntu resolute/main arm64 libxshmfence1 arm64 1.3.3-1 [5378 B]
101s Get:79 http://ftpmaster.internal/ubuntu resolute/main arm64 mesa-libgallium arm64 25.2.3-1ubuntu1 [12.1 MB]
102s Get:80 http://ftpmaster.internal/ubuntu resolute/main arm64 libgbm1 arm64 25.2.3-1ubuntu1 [34.4 kB]
102s Get:81 http://ftpmaster.internal/ubuntu resolute/main arm64 libvulkan1 arm64 1.4.321.0-1 [169 kB]
102s Get:82 http://ftpmaster.internal/ubuntu resolute/main arm64 libgl1-mesa-dri arm64 25.2.3-1ubuntu1 [34.9 kB]
102s Get:83 http://ftpmaster.internal/ubuntu resolute/main arm64 libglx-mesa0 arm64 25.2.3-1ubuntu1 [110 kB]
102s Get:84 http://ftpmaster.internal/ubuntu resolute/main arm64 libglx0 arm64 1.7.0-1build2 [34.5 kB]
102s Get:85 http://ftpmaster.internal/ubuntu resolute/main arm64 libgl1 arm64 1.7.0-1build2 [104 kB]
102s Get:86 http://ftpmaster.internal/ubuntu resolute/main arm64 libasound2-data all 1.2.14-1ubuntu1 [21.2 kB]
102s Get:87 http://ftpmaster.internal/ubuntu resolute/main arm64 libasound2t64 arm64 1.2.14-1ubuntu1 [394 kB]
102s Get:88 http://ftpmaster.internal/ubuntu resolute/main arm64 libgif7 arm64 5.2.2-1ubuntu2 [36.1 kB]
102s Get:89 http://ftpmaster.internal/ubuntu resolute/main arm64 x11-common all 1:7.7+24ubuntu1 [22.4 kB]
102s Get:90 http://ftpmaster.internal/ubuntu resolute/main arm64 libxtst6 arm64 2:1.2.5-1 [13.2 kB]
102s Get:91 http://ftpmaster.internal/ubuntu resolute/main arm64 openjdk-21-jre arm64 21.0.9+10-1 [224 kB]
102s Get:92 http://ftpmaster.internal/ubuntu resolute/main arm64 default-jre arm64 2:1.21-76 [918 B]
102s Get:93 http://ftpmaster.internal/ubuntu resolute/universe arm64 drop-seq-testdata all 3.0.2+dfsg-1 [143 MB]
112s Get:94 http://ftpmaster.internal/ubuntu resolute/universe arm64 libapache-pom-java all 33-2 [5874 B]
112s Get:95 http://ftpmaster.internal/ubuntu resolute/universe arm64 libcommons-parent-java all 56-1 [10.7 kB]
112s Get:96 http://ftpmaster.internal/ubuntu resolute/universe arm64 libcommons-lang3-java all 3.17.0-1 [603 kB]
112s Get:97 http://ftpmaster.internal/ubuntu resolute/universe arm64 libfreemarker-java all 2.3.32-2.1 [1517 kB]
112s Get:98 http://ftpmaster.internal/ubuntu resolute/universe arm64 libgoogle-gson-java all 2.10.1-1 [252 kB]
112s Get:99 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjoptsimple-java all 5.0.4-7 [73.2 kB]
112s Get:100 http://ftpmaster.internal/ubuntu resolute/universe arm64 libcommons-codec-java all 1.18.0-1 [303 kB]
112s Get:101 http://ftpmaster.internal/ubuntu resolute/universe arm64 libcommons-logging-java all 1.3.0-1ubuntu1 [63.8 kB]
112s Get:102 http://ftpmaster.internal/ubuntu resolute/universe arm64 libhttpcore-java all 4.4.16-1 [612 kB]
113s Get:103 http://ftpmaster.internal/ubuntu resolute/universe arm64 libhttpclient-java all 4.5.14-1 [1241 kB]
114s Get:104 http://ftpmaster.internal/ubuntu resolute/universe arm64 liblightcouch-java all 0.2.0-1 [74.2 kB]
114s Get:105 http://ftpmaster.internal/ubuntu resolute/universe arm64 libmongodb-java all 3.6.3-2 [1899 kB]
114s Get:106 http://ftpmaster.internal/ubuntu resolute/universe arm64 libslf4j-java all 1.7.32-2 [141 kB]
114s Get:107 http://ftpmaster.internal/ubuntu resolute/universe arm64 liblog4j2-java all 2.19.0-2 [2294 kB]
115s Get:108 http://ftpmaster.internal/ubuntu resolute/universe arm64 libbarclay-java all 5.0.0+dfsg-1 [108 kB]
115s Get:109 http://ftpmaster.internal/ubuntu resolute/universe arm64 libgeronimo-annotation-1.3-spec-java all 1.3-1 [11.2 kB]
115s Get:110 http://ftpmaster.internal/ubuntu resolute/universe arm64 libciftools-java all 7.0.1-1 [2230 kB]
115s Get:111 http://ftpmaster.internal/ubuntu resolute/universe arm64 libcommons-math-java all 2.2-9 [927 kB]
115s Get:112 http://ftpmaster.internal/ubuntu resolute/universe arm64 libatinject-jsr330-api-java all 1.0+ds1-6 [5076 B]
115s Get:113 http://ftpmaster.internal/ubuntu resolute/universe arm64 liberror-prone-java all 2.18.0-1 [22.5 kB]
115s Get:114 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjsr305-java all 0.1~+svn49-12 [27.0 kB]
115s Get:115 http://ftpmaster.internal/ubuntu resolute/universe arm64 libguava-java all 32.0.1-1 [2692 kB]
116s Get:116 http://ftpmaster.internal/ubuntu resolute/universe arm64 libitext5-java all 5.5.13.3-4 [2691 kB]
116s Get:117 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjackson2-annotations-java all 2.14.0-1 [64.7 kB]
116s Get:118 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjackson2-core-java all 2.14.1-1 [432 kB]
116s Get:119 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjackson2-databind-java all 2.14.0+ds-1 [1481 kB]
116s Get:120 http://ftpmaster.internal/ubuntu resolute/universe arm64 libactivation-java all 1.2.0-2 [84.7 kB]
116s Get:121 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjaxb-api-java all 2.3.1-1 [119 kB]
116s Get:122 http://ftpmaster.internal/ubuntu resolute/universe arm64 libargs4j-java all 2.33-2 [137 kB]
116s Get:123 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjaxen-java all 1.1.6-5 [213 kB]
116s Get:124 http://ftpmaster.internal/ubuntu resolute/universe arm64 libdom4j-java all 2.1.4-1 [310 kB]
116s Get:125 http://ftpmaster.internal/ubuntu resolute/universe arm64 libcommons-io-java all 2.19.0-1 [491 kB]
116s Get:126 http://ftpmaster.internal/ubuntu resolute/universe arm64 libmaven-shared-utils-java all 3.4.2-1 [136 kB]
116s Get:127 http://ftpmaster.internal/ubuntu resolute/universe arm64 libcommons-cli-java all 1.6.0-1 [59.9 kB]
116s Get:128 http://ftpmaster.internal/ubuntu resolute/universe arm64 libaopalliance-java all 20070526-7 [8166 B]
116s Get:129 http://ftpmaster.internal/ubuntu resolute/universe arm64 libguice-java all 5.1.0-1 [926 kB]
116s Get:130 http://ftpmaster.internal/ubuntu resolute/universe arm64 libmaven-parent-java all 43-2 [6306 B]
116s Get:131 http://ftpmaster.internal/ubuntu resolute/universe arm64 libplexus-utils2-java all 3.4.2-1 [256 kB]
116s Get:132 http://ftpmaster.internal/ubuntu resolute/universe arm64 libwagon-provider-api-java all 3.5.3-2 [48.0 kB]
116s Get:133 http://ftpmaster.internal/ubuntu resolute/universe arm64 libmaven-resolver-java all 1.9.22-1 [725 kB]
116s Get:134 http://ftpmaster.internal/ubuntu resolute/universe arm64 libplexus-cipher-java all 2.0-1 [14.7 kB]
116s Get:135 http://ftpmaster.internal/ubuntu resolute/universe arm64 libplexus-classworlds-java all 2.7.0-1 [50.0 kB]
116s Get:136 http://ftpmaster.internal/ubuntu resolute/universe arm64 libplexus-component-annotations-java all 2.1.1-1 [6550 B]
116s Get:137 http://ftpmaster.internal/ubuntu resolute/universe arm64 libplexus-interpolation-java all 1.27-1 [76.2 kB]
116s Get:138 http://ftpmaster.internal/ubuntu resolute/universe arm64 libplexus-sec-dispatcher-java all 2.0-3 [28.1 kB]
116s Get:139 http://ftpmaster.internal/ubuntu resolute/universe arm64 libgeronimo-interceptor-3.0-spec-java all 1.0.1-5fakesync [8382 B]
116s Get:140 http://ftpmaster.internal/ubuntu resolute/universe arm64 libcdi-api-java all 1.2-4 [55.0 kB]
116s Get:141 http://ftpmaster.internal/ubuntu resolute/universe arm64 libsisu-inject-java all 0.3.5-1 [350 kB]
116s Get:142 http://ftpmaster.internal/ubuntu resolute/universe arm64 libsisu-plexus-java all 0.3.5-1 [182 kB]
116s Get:143 http://ftpmaster.internal/ubuntu resolute/universe arm64 libmaven3-core-java all 3.9.9-1 [1653 kB]
116s Get:144 http://ftpmaster.internal/ubuntu resolute/universe arm64 libmaven-shared-io-java all 3.0.0-4 [32.6 kB]
116s Get:145 http://ftpmaster.internal/ubuntu resolute/universe arm64 libmaven-file-management-java all 3.0.0-2 [35.0 kB]
116s Get:146 http://ftpmaster.internal/ubuntu resolute/universe arm64 libcommons-compress-java all 1.27.1-2 [610 kB]
117s Get:147 http://ftpmaster.internal/ubuntu resolute/universe arm64 libplexus-io-java all 3.3.1-2 [64.4 kB]
117s Get:148 http://ftpmaster.internal/ubuntu resolute/main arm64 libsnappy1v5 arm64 1.2.2-1 [30.5 kB]
117s Get:149 http://ftpmaster.internal/ubuntu resolute/universe arm64 libsnappy-jni arm64 1.1.10.7-1 [6672 B]
117s Get:150 http://ftpmaster.internal/ubuntu resolute/universe arm64 libsnappy-java all 1.1.10.7-1 [83.6 kB]
117s Get:151 http://ftpmaster.internal/ubuntu resolute/universe arm64 libxz-java all 1.9-1 [140 kB]
117s Get:152 http://ftpmaster.internal/ubuntu resolute/universe arm64 libplexus-archiver-java all 4.6.1-1 [185 kB]
117s Get:153 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjsoup-java all 1.15.3-1 [407 kB]
117s Get:154 http://ftpmaster.internal/ubuntu resolute/universe arm64 libwagon-http-java all 3.5.3-2 [48.7 kB]
117s Get:155 http://ftpmaster.internal/ubuntu resolute/universe arm64 libistack-commons-java all 3.0.6-5 [145 kB]
117s Get:156 http://ftpmaster.internal/ubuntu resolute/universe arm64 libcodemodel-java all 2.6+jaxb2.3.0.1-11 [164 kB]
117s Get:157 http://ftpmaster.internal/ubuntu resolute/universe arm64 librelaxng-datatype-java all 1.0+ds1-4 [11.8 kB]
117s Get:158 http://ftpmaster.internal/ubuntu resolute/universe arm64 librngom-java all 2.3.0.1-11 [290 kB]
117s Get:159 http://ftpmaster.internal/ubuntu resolute/universe arm64 libxsom-java all 2.3.0.1-11 [399 kB]
117s Get:160 http://ftpmaster.internal/ubuntu resolute/universe arm64 libtxw2-java all 2.3.0.1-11 [133 kB]
117s Get:161 http://ftpmaster.internal/ubuntu resolute/universe arm64 libxml-commons-resolver1.1-java all 1.2-11 [97.6 kB]
117s Get:162 http://ftpmaster.internal/ubuntu resolute/universe arm64 libdtd-parser-java all 1.2-1 [64.9 kB]
117s Get:163 http://ftpmaster.internal/ubuntu resolute/universe arm64 libstax-ex-java all 1.7.8-3 [40.9 kB]
117s Get:164 http://ftpmaster.internal/ubuntu resolute/universe arm64 libstreambuffer-java all 1.5.4-1.1 [74.0 kB]
117s Get:165 http://ftpmaster.internal/ubuntu resolute/universe arm64 libfastinfoset-java all 1.2.12-4 [344 kB]
117s Get:166 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjaxb-java all 2.3.0.1-11 [1974 kB]
117s Get:167 http://ftpmaster.internal/ubuntu resolute/universe arm64 libantlr4-runtime-java all 4.9.2-3 [308 kB]
117s Get:168 http://ftpmaster.internal/ubuntu resolute/universe arm64 libapfloat-java all 1.14.0-2 [722 kB]
117s Get:169 http://ftpmaster.internal/ubuntu resolute/universe arm64 libmaven-archiver-java all 3.6.2-1 [26.0 kB]
117s Get:170 http://ftpmaster.internal/ubuntu resolute/universe arm64 libmaven-jar-plugin-java all 3.3.0-2 [23.9 kB]
117s Get:171 http://ftpmaster.internal/ubuntu resolute/universe arm64 libcommons-text-java all 1.13.1-1 [226 kB]
117s Get:172 http://ftpmaster.internal/ubuntu resolute/universe arm64 libfastutil-java all 8.5.15+dfsg-1 [20.2 MB]
119s Get:173 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjheaps-java all 0.14-2 [143 kB]
119s Get:174 http://ftpmaster.internal/ubuntu resolute/universe arm64 libxml-commons-external-java all 1.4.01-6 [240 kB]
119s Get:175 http://ftpmaster.internal/ubuntu resolute/universe arm64 libxerces2-java all 2.12.2-1 [1430 kB]
119s Get:176 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjgraphx-java all 2.1.0.7-5 [804 kB]
119s Get:177 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjgrapht-java all 1.5.2-1 [1584 kB]
119s Get:178 http://ftpmaster.internal/ubuntu resolute/universe arm64 libinchi1.07 arm64 1.07.3+dfsg-1 [573 kB]
119s Get:179 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjni-inchi-jni arm64 0.8+dfsg-8 [10.2 kB]
119s Get:180 http://ftpmaster.internal/ubuntu resolute/universe arm64 libcommons-exec-java all 1.3-3 [48.0 kB]
119s Get:181 http://ftpmaster.internal/ubuntu resolute/universe arm64 libexec-maven-plugin-java all 3.1.0-2 [66.1 kB]
119s Get:182 http://ftpmaster.internal/ubuntu resolute/universe arm64 libmaven-shared-incremental-java all 1.1-6 [9898 B]
119s Get:183 http://ftpmaster.internal/ubuntu resolute/universe arm64 libcommons-lang-java all 2.6-11 [271 kB]
119s Get:184 http://ftpmaster.internal/ubuntu resolute/universe arm64 libxbean-reflect-java all 4.5-9 [131 kB]
119s Get:185 http://ftpmaster.internal/ubuntu resolute/universe arm64 libplexus-container-default-java all 2.1.1-1 [191 kB]
119s Get:186 http://ftpmaster.internal/ubuntu resolute/universe arm64 libplexus-compiler-java all 2.13.0-1 [98.9 kB]
119s Get:187 http://ftpmaster.internal/ubuntu resolute/universe arm64 libasm-java all 9.8-1 [388 kB]
119s Get:188 http://ftpmaster.internal/ubuntu resolute/universe arm64 libqdox2-java all 2.0.3-1 [296 kB]
119s Get:189 http://ftpmaster.internal/ubuntu resolute/universe arm64 libplexus-languages-java all 1.1.1-3 [47.4 kB]
119s Get:190 http://ftpmaster.internal/ubuntu resolute/universe arm64 libmaven-compiler-plugin-java all 3.13.0-1 [78.2 kB]
119s Get:191 http://ftpmaster.internal/ubuntu resolute/universe arm64 liblog4j1.2-java all 1.2.17-11 [439 kB]
119s Get:192 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjni-inchi-java all 0.8+dfsg-8 [32.6 kB]
119s Get:193 http://ftpmaster.internal/ubuntu resolute/universe arm64 libnaga-java all 3.0+svn80-5 [43.5 kB]
119s Get:194 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjmol-java all 16.2.33+dfsg-1 [10.2 MB]
120s Get:195 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjson-simple-java all 2.3.0-2 [58.5 kB]
120s Get:196 http://ftpmaster.internal/ubuntu resolute/universe arm64 libmsgpack-java all 0.9.6-1 [159 kB]
120s Get:197 http://ftpmaster.internal/ubuntu resolute/universe arm64 libmmtf-java all 1.0.11-1 [184 kB]
120s Get:198 http://ftpmaster.internal/ubuntu resolute/universe arm64 libvecmath-java all 1.5.2-7 [96.9 kB]
120s Get:199 http://ftpmaster.internal/ubuntu resolute/universe arm64 libbiojava6-java all 6.1.0+dfsg-5 [5323 kB]
120s Get:200 http://ftpmaster.internal/ubuntu resolute/universe arm64 libcommons-collections4-java all 4.4-2 [670 kB]
120s Get:201 http://ftpmaster.internal/ubuntu resolute/universe arm64 libcommons-math3-java all 3.6.1-4 [2029 kB]
120s Get:202 http://ftpmaster.internal/ubuntu resolute/universe arm64 libcommons-jexl2-java all 2.1.1-6 [250 kB]
120s Get:203 http://ftpmaster.internal/ubuntu resolute/universe arm64 libhamcrest-java all 2.2-2 [117 kB]
121s Get:204 http://ftpmaster.internal/ubuntu resolute/universe arm64 junit4 all 4.13.2-5 [348 kB]
121s Get:205 http://ftpmaster.internal/ubuntu resolute/universe arm64 libcommons-collections3-java all 3.2.2-3 [526 kB]
121s Get:206 http://ftpmaster.internal/ubuntu resolute/universe arm64 libcommons-beanutils-java all 1.10.1-1.1 [224 kB]
121s Get:207 http://ftpmaster.internal/ubuntu resolute/universe arm64 libezmorph-java all 1.0.6-4 [76.0 kB]
121s Get:208 http://ftpmaster.internal/ubuntu resolute/universe arm64 libxom-java all 1.3.9-1 [174 kB]
121s Get:209 http://ftpmaster.internal/ubuntu resolute/universe arm64 libjson-java all 3.1.0+dfsg-2 [141 kB]
121s Get:210 http://ftpmaster.internal/ubuntu resolute/universe arm64 libmbedcrypto16 arm64 3.6.2-3ubuntu1 [258 kB]
121s Get:211 http://ftpmaster.internal/ubuntu resolute/universe arm64 libmbedx509-7 arm64 3.6.2-3ubuntu1 [35.7 kB]
121s Get:212 http://ftpmaster.internal/ubuntu resolute/universe arm64 libmbedtls21 arm64 3.6.2-3ubuntu1 [122 kB]
121s Get:213 http://ftpmaster.internal/ubuntu resolute/universe arm64 ncbi-vdb-data all 3.2.1+dfsg-2 [81.3 kB]
121s Get:214 http://ftpmaster.internal/ubuntu resolute/universe arm64 libncbi-vdb3 arm64 3.2.1+dfsg-2 [1259 kB]
121s Get:215 http://ftpmaster.internal/ubuntu resolute/universe arm64 libncbi-ngs3 arm64 3.2.1+dfsg-4ubuntu5 [147 kB]
121s Get:216 http://ftpmaster.internal/ubuntu resolute/universe arm64 libngs-jni arm64 3.2.1+dfsg-4ubuntu5 [4808 B]
121s Get:217 http://ftpmaster.internal/ubuntu resolute/universe arm64 libngs-java arm64 3.2.1+dfsg-4ubuntu5 [91.1 kB]
121s Get:218 http://ftpmaster.internal/ubuntu resolute/universe arm64 librhino-java all 1.7.15-1 [1354 kB]
121s Get:219 http://ftpmaster.internal/ubuntu resolute/universe arm64 libhtsjdk-java all 4.1.3+dfsg-2 [1829 kB]
122s Get:220 http://ftpmaster.internal/ubuntu resolute/universe arm64 libla4j-java all 0.6.0-4 [224 kB]
122s Get:221 http://ftpmaster.internal/ubuntu resolute/universe arm64 libgatk-native-bindings-java all 1.0.0+dfsg-2 [8014 B]
122s Get:222 http://ftpmaster.internal/ubuntu resolute/universe arm64 libgkl-java all 0.8.11+dfsg-2build1 [24.9 kB]
122s Get:223 http://ftpmaster.internal/ubuntu resolute/universe arm64 libpicard-java all 3.3.0+dfsg-2 [1765 kB]
122s Get:224 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 libyaml-snake-java all 2.5+ds-1 [325 kB]
122s Get:225 http://ftpmaster.internal/ubuntu resolute/main arm64 unzip arm64 6.0-28ubuntu7 [176 kB]
122s Get:226 http://ftpmaster.internal/ubuntu resolute/universe arm64 java-wrappers all 0.5 [9042 B]
122s Get:227 http://ftpmaster.internal/ubuntu resolute/universe arm64 picard-tools all 3.3.0+dfsg-2 [308 kB]
122s Get:228 http://ftpmaster.internal/ubuntu resolute/universe arm64 drop-seq-tools all 3.0.2+dfsg-1 [614 kB]
122s Get:229 http://ftpmaster.internal/ubuntu resolute/universe arm64 libhtscodecs2 arm64 1.6.1-2 [82.7 kB]
122s Get:230 http://ftpmaster.internal/ubuntu resolute/universe arm64 libhts3t64 arm64 1.21+ds-1 [441 kB]
122s Get:231 http://ftpmaster.internal/ubuntu resolute/universe arm64 samtools arm64 1.21-1 [609 kB]
123s Fetched 308 MB in 24s (12.9 MB/s)
123s Selecting previously unselected package libgdk-pixbuf2.0-common.
123s (Reading database ... 
(Reading database ... 5%
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(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 83457 files and directories currently installed.)
123s Preparing to unpack .../000-libgdk-pixbuf2.0-common_2.44.4+dfsg-1_all.deb ...
123s Unpacking libgdk-pixbuf2.0-common (2.44.4+dfsg-1) ...
123s Selecting previously unselected package libjpeg-turbo8:arm64.
123s Preparing to unpack .../001-libjpeg-turbo8_2.1.5-4ubuntu2_arm64.deb ...
123s Unpacking libjpeg-turbo8:arm64 (2.1.5-4ubuntu2) ...
123s Selecting previously unselected package libjpeg8:arm64.
123s Preparing to unpack .../002-libjpeg8_8c-2ubuntu11_arm64.deb ...
123s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ...
123s Selecting previously unselected package libdeflate0:arm64.
123s Preparing to unpack .../003-libdeflate0_1.23-2_arm64.deb ...
123s Unpacking libdeflate0:arm64 (1.23-2) ...
123s Selecting previously unselected package libjbig0:arm64.
123s Preparing to unpack .../004-libjbig0_2.1-6.1ubuntu2_arm64.deb ...
123s Unpacking libjbig0:arm64 (2.1-6.1ubuntu2) ...
123s Selecting previously unselected package liblerc4:arm64.
123s Preparing to unpack .../005-liblerc4_4.0.0+ds-5ubuntu1_arm64.deb ...
123s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu1) ...
123s Selecting previously unselected package libsharpyuv0:arm64.
123s Preparing to unpack .../006-libsharpyuv0_1.5.0-0.1_arm64.deb ...
123s Unpacking libsharpyuv0:arm64 (1.5.0-0.1) ...
123s Selecting previously unselected package libwebp7:arm64.
123s Preparing to unpack .../007-libwebp7_1.5.0-0.1_arm64.deb ...
123s Unpacking libwebp7:arm64 (1.5.0-0.1) ...
123s Selecting previously unselected package libtiff6:arm64.
124s Preparing to unpack .../008-libtiff6_4.7.0-3ubuntu3_arm64.deb ...
124s Unpacking libtiff6:arm64 (4.7.0-3ubuntu3) ...
124s Selecting previously unselected package libgdk-pixbuf-2.0-0:arm64.
124s Preparing to unpack .../009-libgdk-pixbuf-2.0-0_2.44.4+dfsg-1_arm64.deb ...
124s Unpacking libgdk-pixbuf-2.0-0:arm64 (2.44.4+dfsg-1) ...
124s Selecting previously unselected package gtk-update-icon-cache.
124s Preparing to unpack .../010-gtk-update-icon-cache_4.20.2+ds-1_arm64.deb ...
124s No diversion 'diversion of /usr/sbin/update-icon-caches to /usr/sbin/update-icon-caches.gtk2 by libgtk-3-bin', none removed.
124s No diversion 'diversion of /usr/share/man/man8/update-icon-caches.8.gz to /usr/share/man/man8/update-icon-caches.gtk2.8.gz by libgtk-3-bin', none removed.
124s Unpacking gtk-update-icon-cache (4.20.2+ds-1) ...
124s Selecting previously unselected package hicolor-icon-theme.
124s Preparing to unpack .../011-hicolor-icon-theme_0.18-2_all.deb ...
124s Unpacking hicolor-icon-theme (0.18-2) ...
124s Selecting previously unselected package adwaita-icon-theme.
124s Preparing to unpack .../012-adwaita-icon-theme_49.0-1_all.deb ...
124s Unpacking adwaita-icon-theme (49.0-1) ...
124s Selecting previously unselected package ca-certificates-java.
124s Preparing to unpack .../013-ca-certificates-java_20240118_all.deb ...
124s Unpacking ca-certificates-java (20240118) ...
124s Selecting previously unselected package java-common.
124s Preparing to unpack .../014-java-common_0.76_all.deb ...
124s Unpacking java-common (0.76) ...
124s Selecting previously unselected package liblcms2-2:arm64.
124s Preparing to unpack .../015-liblcms2-2_2.16-2_arm64.deb ...
124s Unpacking liblcms2-2:arm64 (2.16-2) ...
124s Selecting previously unselected package libnspr4:arm64.
124s Preparing to unpack .../016-libnspr4_2%3a4.36-1ubuntu2_arm64.deb ...
124s Unpacking libnspr4:arm64 (2:4.36-1ubuntu2) ...
124s Selecting previously unselected package libnss3:arm64.
124s Preparing to unpack .../017-libnss3_2%3a3.114-1_arm64.deb ...
124s Unpacking libnss3:arm64 (2:3.114-1) ...
124s Selecting previously unselected package libpcsclite1:arm64.
124s Preparing to unpack .../018-libpcsclite1_2.3.3-1_arm64.deb ...
124s Unpacking libpcsclite1:arm64 (2.3.3-1) ...
124s Selecting previously unselected package openjdk-21-jre-headless:arm64.
124s Preparing to unpack .../019-openjdk-21-jre-headless_21.0.9+10-1_arm64.deb ...
124s Unpacking openjdk-21-jre-headless:arm64 (21.0.9+10-1) ...
126s Selecting previously unselected package default-jre-headless.
126s Preparing to unpack .../020-default-jre-headless_2%3a1.21-76_arm64.deb ...
126s Unpacking default-jre-headless (2:1.21-76) ...
126s Selecting previously unselected package ant.
126s Preparing to unpack .../021-ant_1.10.15-1_all.deb ...
126s Unpacking ant (1.10.15-1) ...
126s Selecting previously unselected package ant-optional.
126s Preparing to unpack .../022-ant-optional_1.10.15-1_all.deb ...
126s Unpacking ant-optional (1.10.15-1) ...
126s Selecting previously unselected package at-spi2-common.
126s Preparing to unpack .../023-at-spi2-common_2.57.1-1_all.deb ...
126s Unpacking at-spi2-common (2.57.1-1) ...
126s Selecting previously unselected package libdconf1:arm64.
126s Preparing to unpack .../024-libdconf1_0.49.0-1_arm64.deb ...
126s Unpacking libdconf1:arm64 (0.49.0-1) ...
126s Selecting previously unselected package dconf-service.
126s Preparing to unpack .../025-dconf-service_0.49.0-1_arm64.deb ...
126s Unpacking dconf-service (0.49.0-1) ...
126s Selecting previously unselected package dconf-gsettings-backend:arm64.
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126s Selecting previously unselected package libatk-bridge2.0-0t64:arm64.
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127s Selecting previously unselected package fonts-dejavu-mono.
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127s Selecting previously unselected package libxcb-shm0:arm64.
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127s Preparing to unpack .../038-libxrender1_1%3a0.9.12-1_arm64.deb ...
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127s Selecting previously unselected package libcairo2:arm64.
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128s Selecting previously unselected package libavahi-common-data:arm64.
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128s Selecting previously unselected package libepoxy0:arm64.
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128s Selecting previously unselected package libgraphite2-3:arm64.
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128s Selecting previously unselected package libdatrie1:arm64.
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128s Selecting previously unselected package libpango-1.0-0:arm64.
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128s Selecting previously unselected package libpangocairo-1.0-0:arm64.
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128s Selecting previously unselected package libwayland-client0:arm64.
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128s Selecting previously unselected package libwayland-egl1:arm64.
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128s Selecting previously unselected package libxcomposite1:arm64.
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128s Selecting previously unselected package libxfixes3:arm64.
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128s Selecting previously unselected package libxcursor1:arm64.
128s Preparing to unpack .../061-libxcursor1_1%3a1.2.3-1_arm64.deb ...
128s Unpacking libxcursor1:arm64 (1:1.2.3-1) ...
128s Selecting previously unselected package libxdamage1:arm64.
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128s Selecting previously unselected package libxinerama1:arm64.
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128s Selecting previously unselected package libxrandr2:arm64.
128s Preparing to unpack .../064-libxrandr2_2%3a1.5.4-1_arm64.deb ...
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128s Selecting previously unselected package libgtk-3-common.
129s Preparing to unpack .../065-libgtk-3-common_3.24.50-1ubuntu2_all.deb ...
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129s Selecting previously unselected package libgtk-3-0t64:arm64.
129s Preparing to unpack .../066-libgtk-3-0t64_3.24.50-1ubuntu2_arm64.deb ...
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129s Selecting previously unselected package libglvnd0:arm64.
129s Preparing to unpack .../067-libglvnd0_1.7.0-1build2_arm64.deb ...
129s Unpacking libglvnd0:arm64 (1.7.0-1build2) ...
129s Selecting previously unselected package libx11-xcb1:arm64.
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129s Selecting previously unselected package libxcb-dri3-0:arm64.
129s Preparing to unpack .../069-libxcb-dri3-0_1.17.0-2build1_arm64.deb ...
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129s Selecting previously unselected package libxcb-glx0:arm64.
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129s Selecting previously unselected package libxcb-present0:arm64.
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129s Unpacking libxcb-present0:arm64 (1.17.0-2build1) ...
129s Selecting previously unselected package libxcb-xfixes0:arm64.
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129s Selecting previously unselected package libxxf86vm1:arm64.
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129s Selecting previously unselected package libdrm-amdgpu1:arm64.
129s Preparing to unpack .../074-libdrm-amdgpu1_2.4.127-1ubuntu1_arm64.deb ...
129s Unpacking libdrm-amdgpu1:arm64 (2.4.127-1ubuntu1) ...
129s Selecting previously unselected package libxcb-randr0:arm64.
129s Preparing to unpack .../075-libxcb-randr0_1.17.0-2build1_arm64.deb ...
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129s Selecting previously unselected package libxcb-sync1:arm64.
129s Preparing to unpack .../076-libxcb-sync1_1.17.0-2build1_arm64.deb ...
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129s Selecting previously unselected package libxshmfence1:arm64.
129s Preparing to unpack .../077-libxshmfence1_1.3.3-1_arm64.deb ...
129s Unpacking libxshmfence1:arm64 (1.3.3-1) ...
129s Selecting previously unselected package mesa-libgallium:arm64.
129s Preparing to unpack .../078-mesa-libgallium_25.2.3-1ubuntu1_arm64.deb ...
129s Unpacking mesa-libgallium:arm64 (25.2.3-1ubuntu1) ...
129s Selecting previously unselected package libgbm1:arm64.
130s Preparing to unpack .../079-libgbm1_25.2.3-1ubuntu1_arm64.deb ...
130s Unpacking libgbm1:arm64 (25.2.3-1ubuntu1) ...
130s Selecting previously unselected package libvulkan1:arm64.
130s Preparing to unpack .../080-libvulkan1_1.4.321.0-1_arm64.deb ...
130s Unpacking libvulkan1:arm64 (1.4.321.0-1) ...
130s Selecting previously unselected package libgl1-mesa-dri:arm64.
130s Preparing to unpack .../081-libgl1-mesa-dri_25.2.3-1ubuntu1_arm64.deb ...
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130s Selecting previously unselected package libglx-mesa0:arm64.
130s Preparing to unpack .../082-libglx-mesa0_25.2.3-1ubuntu1_arm64.deb ...
130s Unpacking libglx-mesa0:arm64 (25.2.3-1ubuntu1) ...
130s Selecting previously unselected package libglx0:arm64.
130s Preparing to unpack .../083-libglx0_1.7.0-1build2_arm64.deb ...
130s Unpacking libglx0:arm64 (1.7.0-1build2) ...
130s Selecting previously unselected package libgl1:arm64.
130s Preparing to unpack .../084-libgl1_1.7.0-1build2_arm64.deb ...
130s Unpacking libgl1:arm64 (1.7.0-1build2) ...
130s Selecting previously unselected package libasound2-data.
130s Preparing to unpack .../085-libasound2-data_1.2.14-1ubuntu1_all.deb ...
130s Unpacking libasound2-data (1.2.14-1ubuntu1) ...
130s Selecting previously unselected package libasound2t64:arm64.
130s Preparing to unpack .../086-libasound2t64_1.2.14-1ubuntu1_arm64.deb ...
130s Unpacking libasound2t64:arm64 (1.2.14-1ubuntu1) ...
130s Selecting previously unselected package libgif7:arm64.
130s Preparing to unpack .../087-libgif7_5.2.2-1ubuntu2_arm64.deb ...
130s Unpacking libgif7:arm64 (5.2.2-1ubuntu2) ...
130s Selecting previously unselected package x11-common.
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130s Selecting previously unselected package libxtst6:arm64.
130s Preparing to unpack .../089-libxtst6_2%3a1.2.5-1_arm64.deb ...
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130s Selecting previously unselected package openjdk-21-jre:arm64.
130s Preparing to unpack .../090-openjdk-21-jre_21.0.9+10-1_arm64.deb ...
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130s Selecting previously unselected package drop-seq-testdata.
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131s Selecting previously unselected package libapache-pom-java.
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131s Selecting previously unselected package libcommons-parent-java.
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131s Selecting previously unselected package libcommons-lang3-java.
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131s Selecting previously unselected package libfreemarker-java.
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131s Selecting previously unselected package libgoogle-gson-java.
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131s Selecting previously unselected package libjoptsimple-java.
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131s Selecting previously unselected package libcommons-codec-java.
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131s Selecting previously unselected package libcommons-logging-java.
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131s Selecting previously unselected package libhttpcore-java.
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131s Unpacking libhttpcore-java (4.4.16-1) ...
131s Selecting previously unselected package libhttpclient-java.
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131s Selecting previously unselected package liblightcouch-java.
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131s Selecting previously unselected package libmongodb-java.
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131s Selecting previously unselected package libslf4j-java.
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132s Selecting previously unselected package liblog4j2-java.
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132s Selecting previously unselected package libbarclay-java.
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132s Unpacking libbarclay-java (5.0.0+dfsg-1) ...
132s Selecting previously unselected package libgeronimo-annotation-1.3-spec-java.
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132s Selecting previously unselected package libciftools-java.
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132s Selecting previously unselected package libcommons-math-java.
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132s Selecting previously unselected package libatinject-jsr330-api-java.
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132s Selecting previously unselected package liberror-prone-java.
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132s Selecting previously unselected package libjsr305-java.
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132s Selecting previously unselected package libguava-java.
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132s Unpacking libguava-java (32.0.1-1) ...
132s Selecting previously unselected package libitext5-java.
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132s Unpacking libitext5-java (5.5.13.3-4) ...
132s Selecting previously unselected package libjackson2-annotations-java.
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132s Selecting previously unselected package libjackson2-core-java.
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132s Selecting previously unselected package libjackson2-databind-java.
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132s Unpacking libjackson2-databind-java (2.14.0+ds-1) ...
132s Selecting previously unselected package libactivation-java.
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132s Unpacking libactivation-java (1.2.0-2) ...
132s Selecting previously unselected package libjaxb-api-java.
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132s Selecting previously unselected package libargs4j-java.
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132s Unpacking libargs4j-java (2.33-2) ...
132s Selecting previously unselected package libjaxen-java.
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132s Unpacking libjaxen-java (1.1.6-5) ...
132s Selecting previously unselected package libdom4j-java.
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132s Unpacking libdom4j-java (2.1.4-1) ...
132s Selecting previously unselected package libcommons-io-java.
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132s Selecting previously unselected package libmaven-shared-utils-java.
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132s Selecting previously unselected package libcommons-cli-java.
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132s Selecting previously unselected package libaopalliance-java.
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132s Unpacking libaopalliance-java (20070526-7) ...
132s Selecting previously unselected package libguice-java.
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132s Unpacking libguice-java (5.1.0-1) ...
133s Selecting previously unselected package libmaven-parent-java.
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133s Unpacking libmaven-parent-java (43-2) ...
133s Selecting previously unselected package libplexus-utils2-java.
133s Preparing to unpack .../130-libplexus-utils2-java_3.4.2-1_all.deb ...
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133s Selecting previously unselected package libwagon-provider-api-java.
133s Preparing to unpack .../131-libwagon-provider-api-java_3.5.3-2_all.deb ...
133s Unpacking libwagon-provider-api-java (3.5.3-2) ...
133s Selecting previously unselected package libmaven-resolver-java.
133s Preparing to unpack .../132-libmaven-resolver-java_1.9.22-1_all.deb ...
133s Unpacking libmaven-resolver-java (1.9.22-1) ...
133s Selecting previously unselected package libplexus-cipher-java.
133s Preparing to unpack .../133-libplexus-cipher-java_2.0-1_all.deb ...
133s Unpacking libplexus-cipher-java (2.0-1) ...
133s Selecting previously unselected package libplexus-classworlds-java.
133s Preparing to unpack .../134-libplexus-classworlds-java_2.7.0-1_all.deb ...
133s Unpacking libplexus-classworlds-java (2.7.0-1) ...
133s Selecting previously unselected package libplexus-component-annotations-java.
133s Preparing to unpack .../135-libplexus-component-annotations-java_2.1.1-1_all.deb ...
133s Unpacking libplexus-component-annotations-java (2.1.1-1) ...
133s Selecting previously unselected package libplexus-interpolation-java.
133s Preparing to unpack .../136-libplexus-interpolation-java_1.27-1_all.deb ...
133s Unpacking libplexus-interpolation-java (1.27-1) ...
133s Selecting previously unselected package libplexus-sec-dispatcher-java.
133s Preparing to unpack .../137-libplexus-sec-dispatcher-java_2.0-3_all.deb ...
133s Unpacking libplexus-sec-dispatcher-java (2.0-3) ...
133s Selecting previously unselected package libgeronimo-interceptor-3.0-spec-java.
133s Preparing to unpack .../138-libgeronimo-interceptor-3.0-spec-java_1.0.1-5fakesync_all.deb ...
133s Unpacking libgeronimo-interceptor-3.0-spec-java (1.0.1-5fakesync) ...
133s Selecting previously unselected package libcdi-api-java.
133s Preparing to unpack .../139-libcdi-api-java_1.2-4_all.deb ...
133s Unpacking libcdi-api-java (1.2-4) ...
133s Selecting previously unselected package libsisu-inject-java.
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133s Unpacking libsisu-inject-java (0.3.5-1) ...
133s Selecting previously unselected package libsisu-plexus-java.
133s Preparing to unpack .../141-libsisu-plexus-java_0.3.5-1_all.deb ...
133s Unpacking libsisu-plexus-java (0.3.5-1) ...
133s Selecting previously unselected package libmaven3-core-java.
133s Preparing to unpack .../142-libmaven3-core-java_3.9.9-1_all.deb ...
133s Unpacking libmaven3-core-java (3.9.9-1) ...
133s Selecting previously unselected package libmaven-shared-io-java.
133s Preparing to unpack .../143-libmaven-shared-io-java_3.0.0-4_all.deb ...
133s Unpacking libmaven-shared-io-java (3.0.0-4) ...
133s Selecting previously unselected package libmaven-file-management-java.
133s Preparing to unpack .../144-libmaven-file-management-java_3.0.0-2_all.deb ...
133s Unpacking libmaven-file-management-java (3.0.0-2) ...
133s Selecting previously unselected package libcommons-compress-java.
133s Preparing to unpack .../145-libcommons-compress-java_1.27.1-2_all.deb ...
133s Unpacking libcommons-compress-java (1.27.1-2) ...
133s Selecting previously unselected package libplexus-io-java.
133s Preparing to unpack .../146-libplexus-io-java_3.3.1-2_all.deb ...
133s Unpacking libplexus-io-java (3.3.1-2) ...
133s Selecting previously unselected package libsnappy1v5:arm64.
133s Preparing to unpack .../147-libsnappy1v5_1.2.2-1_arm64.deb ...
133s Unpacking libsnappy1v5:arm64 (1.2.2-1) ...
133s Selecting previously unselected package libsnappy-jni.
133s Preparing to unpack .../148-libsnappy-jni_1.1.10.7-1_arm64.deb ...
133s Unpacking libsnappy-jni (1.1.10.7-1) ...
133s Selecting previously unselected package libsnappy-java.
133s Preparing to unpack .../149-libsnappy-java_1.1.10.7-1_all.deb ...
133s Unpacking libsnappy-java (1.1.10.7-1) ...
133s Selecting previously unselected package libxz-java.
133s Preparing to unpack .../150-libxz-java_1.9-1_all.deb ...
133s Unpacking libxz-java (1.9-1) ...
133s Selecting previously unselected package libplexus-archiver-java.
133s Preparing to unpack .../151-libplexus-archiver-java_4.6.1-1_all.deb ...
133s Unpacking libplexus-archiver-java (4.6.1-1) ...
133s Selecting previously unselected package libjsoup-java.
134s Preparing to unpack .../152-libjsoup-java_1.15.3-1_all.deb ...
134s Unpacking libjsoup-java (1.15.3-1) ...
134s Selecting previously unselected package libwagon-http-java.
134s Preparing to unpack .../153-libwagon-http-java_3.5.3-2_all.deb ...
134s Unpacking libwagon-http-java (3.5.3-2) ...
134s Selecting previously unselected package libistack-commons-java.
134s Preparing to unpack .../154-libistack-commons-java_3.0.6-5_all.deb ...
134s Unpacking libistack-commons-java (3.0.6-5) ...
134s Selecting previously unselected package libcodemodel-java.
134s Preparing to unpack .../155-libcodemodel-java_2.6+jaxb2.3.0.1-11_all.deb ...
134s Unpacking libcodemodel-java (2.6+jaxb2.3.0.1-11) ...
134s Selecting previously unselected package librelaxng-datatype-java.
134s Preparing to unpack .../156-librelaxng-datatype-java_1.0+ds1-4_all.deb ...
134s Unpacking librelaxng-datatype-java (1.0+ds1-4) ...
134s Selecting previously unselected package librngom-java.
134s Preparing to unpack .../157-librngom-java_2.3.0.1-11_all.deb ...
134s Unpacking librngom-java (2.3.0.1-11) ...
134s Selecting previously unselected package libxsom-java.
134s Preparing to unpack .../158-libxsom-java_2.3.0.1-11_all.deb ...
134s Unpacking libxsom-java (2.3.0.1-11) ...
134s Selecting previously unselected package libtxw2-java.
134s Preparing to unpack .../159-libtxw2-java_2.3.0.1-11_all.deb ...
134s Unpacking libtxw2-java (2.3.0.1-11) ...
134s Selecting previously unselected package libxml-commons-resolver1.1-java.
134s Preparing to unpack .../160-libxml-commons-resolver1.1-java_1.2-11_all.deb ...
134s Unpacking libxml-commons-resolver1.1-java (1.2-11) ...
134s Selecting previously unselected package libdtd-parser-java.
134s Preparing to unpack .../161-libdtd-parser-java_1.2-1_all.deb ...
134s Unpacking libdtd-parser-java (1.2-1) ...
134s Selecting previously unselected package libstax-ex-java.
134s Preparing to unpack .../162-libstax-ex-java_1.7.8-3_all.deb ...
134s Unpacking libstax-ex-java (1.7.8-3) ...
134s Selecting previously unselected package libstreambuffer-java.
134s Preparing to unpack .../163-libstreambuffer-java_1.5.4-1.1_all.deb ...
134s Unpacking libstreambuffer-java (1.5.4-1.1) ...
134s Selecting previously unselected package libfastinfoset-java.
134s Preparing to unpack .../164-libfastinfoset-java_1.2.12-4_all.deb ...
134s Unpacking libfastinfoset-java (1.2.12-4) ...
134s Selecting previously unselected package libjaxb-java.
134s Preparing to unpack .../165-libjaxb-java_2.3.0.1-11_all.deb ...
134s Unpacking libjaxb-java (2.3.0.1-11) ...
134s Selecting previously unselected package libantlr4-runtime-java.
134s Preparing to unpack .../166-libantlr4-runtime-java_4.9.2-3_all.deb ...
134s Unpacking libantlr4-runtime-java (4.9.2-3) ...
134s Selecting previously unselected package libapfloat-java.
134s Preparing to unpack .../167-libapfloat-java_1.14.0-2_all.deb ...
134s Unpacking libapfloat-java (1.14.0-2) ...
134s Selecting previously unselected package libmaven-archiver-java.
134s Preparing to unpack .../168-libmaven-archiver-java_3.6.2-1_all.deb ...
134s Unpacking libmaven-archiver-java (3.6.2-1) ...
134s Selecting previously unselected package libmaven-jar-plugin-java.
134s Preparing to unpack .../169-libmaven-jar-plugin-java_3.3.0-2_all.deb ...
134s Unpacking libmaven-jar-plugin-java (3.3.0-2) ...
134s Selecting previously unselected package libcommons-text-java.
134s Preparing to unpack .../170-libcommons-text-java_1.13.1-1_all.deb ...
134s Unpacking libcommons-text-java (1.13.1-1) ...
134s Selecting previously unselected package libfastutil-java.
134s Preparing to unpack .../171-libfastutil-java_8.5.15+dfsg-1_all.deb ...
134s Unpacking libfastutil-java (8.5.15+dfsg-1) ...
135s Selecting previously unselected package libjheaps-java.
135s Preparing to unpack .../172-libjheaps-java_0.14-2_all.deb ...
135s Unpacking libjheaps-java (0.14-2) ...
135s Selecting previously unselected package libxml-commons-external-java.
135s Preparing to unpack .../173-libxml-commons-external-java_1.4.01-6_all.deb ...
135s Unpacking libxml-commons-external-java (1.4.01-6) ...
135s Selecting previously unselected package libxerces2-java.
135s Preparing to unpack .../174-libxerces2-java_2.12.2-1_all.deb ...
135s Unpacking libxerces2-java (2.12.2-1) ...
135s Selecting previously unselected package libjgraphx-java.
135s Preparing to unpack .../175-libjgraphx-java_2.1.0.7-5_all.deb ...
135s Unpacking libjgraphx-java (2.1.0.7-5) ...
135s Selecting previously unselected package libjgrapht-java.
135s Preparing to unpack .../176-libjgrapht-java_1.5.2-1_all.deb ...
135s Unpacking libjgrapht-java (1.5.2-1) ...
135s Selecting previously unselected package libinchi1.07.
135s Preparing to unpack .../177-libinchi1.07_1.07.3+dfsg-1_arm64.deb ...
135s Unpacking libinchi1.07 (1.07.3+dfsg-1) ...
135s Selecting previously unselected package libjni-inchi-jni.
135s Preparing to unpack .../178-libjni-inchi-jni_0.8+dfsg-8_arm64.deb ...
135s Unpacking libjni-inchi-jni (0.8+dfsg-8) ...
135s Selecting previously unselected package libcommons-exec-java.
135s Preparing to unpack .../179-libcommons-exec-java_1.3-3_all.deb ...
135s Unpacking libcommons-exec-java (1.3-3) ...
135s Selecting previously unselected package libexec-maven-plugin-java.
135s Preparing to unpack .../180-libexec-maven-plugin-java_3.1.0-2_all.deb ...
135s Unpacking libexec-maven-plugin-java (3.1.0-2) ...
135s Selecting previously unselected package libmaven-shared-incremental-java.
135s Preparing to unpack .../181-libmaven-shared-incremental-java_1.1-6_all.deb ...
135s Unpacking libmaven-shared-incremental-java (1.1-6) ...
135s Selecting previously unselected package libcommons-lang-java.
135s Preparing to unpack .../182-libcommons-lang-java_2.6-11_all.deb ...
135s Unpacking libcommons-lang-java (2.6-11) ...
135s Selecting previously unselected package libxbean-reflect-java.
135s Preparing to unpack .../183-libxbean-reflect-java_4.5-9_all.deb ...
135s Unpacking libxbean-reflect-java (4.5-9) ...
135s Selecting previously unselected package libplexus-container-default-java.
135s Preparing to unpack .../184-libplexus-container-default-java_2.1.1-1_all.deb ...
135s Unpacking libplexus-container-default-java (2.1.1-1) ...
135s Selecting previously unselected package libplexus-compiler-java.
135s Preparing to unpack .../185-libplexus-compiler-java_2.13.0-1_all.deb ...
135s Unpacking libplexus-compiler-java (2.13.0-1) ...
135s Selecting previously unselected package libasm-java.
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135s Unpacking libasm-java (9.8-1) ...
135s Selecting previously unselected package libqdox2-java.
135s Preparing to unpack .../187-libqdox2-java_2.0.3-1_all.deb ...
135s Unpacking libqdox2-java (2.0.3-1) ...
135s Selecting previously unselected package libplexus-languages-java.
135s Preparing to unpack .../188-libplexus-languages-java_1.1.1-3_all.deb ...
135s Unpacking libplexus-languages-java (1.1.1-3) ...
135s Selecting previously unselected package libmaven-compiler-plugin-java.
135s Preparing to unpack .../189-libmaven-compiler-plugin-java_3.13.0-1_all.deb ...
135s Unpacking libmaven-compiler-plugin-java (3.13.0-1) ...
135s Selecting previously unselected package liblog4j1.2-java.
135s Preparing to unpack .../190-liblog4j1.2-java_1.2.17-11_all.deb ...
135s Unpacking liblog4j1.2-java (1.2.17-11) ...
135s Selecting previously unselected package libjni-inchi-java.
135s Preparing to unpack .../191-libjni-inchi-java_0.8+dfsg-8_all.deb ...
135s Unpacking libjni-inchi-java (0.8+dfsg-8) ...
135s Selecting previously unselected package libnaga-java.
135s Preparing to unpack .../192-libnaga-java_3.0+svn80-5_all.deb ...
135s Unpacking libnaga-java (3.0+svn80-5) ...
135s Selecting previously unselected package libjmol-java.
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135s Unpacking libjmol-java (16.2.33+dfsg-1) ...
136s Selecting previously unselected package libjson-simple-java.
136s Preparing to unpack .../194-libjson-simple-java_2.3.0-2_all.deb ...
136s Unpacking libjson-simple-java (2.3.0-2) ...
136s Selecting previously unselected package libmsgpack-java.
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136s Unpacking libmsgpack-java (0.9.6-1) ...
136s Selecting previously unselected package libmmtf-java.
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136s Unpacking libmmtf-java (1.0.11-1) ...
136s Selecting previously unselected package libvecmath-java.
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136s Selecting previously unselected package libbiojava6-java.
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136s Selecting previously unselected package libcommons-collections4-java.
136s Preparing to unpack .../199-libcommons-collections4-java_4.4-2_all.deb ...
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136s Selecting previously unselected package libcommons-math3-java.
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136s Unpacking libcommons-math3-java (3.6.1-4) ...
136s Selecting previously unselected package libcommons-jexl2-java.
136s Preparing to unpack .../201-libcommons-jexl2-java_2.1.1-6_all.deb ...
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136s Selecting previously unselected package libhamcrest-java.
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136s Unpacking libhamcrest-java (2.2-2) ...
136s Selecting previously unselected package junit4.
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136s Unpacking junit4 (4.13.2-5) ...
136s Selecting previously unselected package libcommons-collections3-java.
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136s Unpacking libcommons-collections3-java (3.2.2-3) ...
136s Selecting previously unselected package libcommons-beanutils-java.
136s Preparing to unpack .../205-libcommons-beanutils-java_1.10.1-1.1_all.deb ...
136s Unpacking libcommons-beanutils-java (1.10.1-1.1) ...
136s Selecting previously unselected package libezmorph-java.
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136s Selecting previously unselected package libxom-java.
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136s Selecting previously unselected package libjson-java.
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136s Unpacking libjson-java (3.1.0+dfsg-2) ...
136s Selecting previously unselected package libmbedcrypto16:arm64.
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136s Unpacking libmbedcrypto16:arm64 (3.6.2-3ubuntu1) ...
136s Selecting previously unselected package libmbedx509-7:arm64.
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136s Unpacking libmbedx509-7:arm64 (3.6.2-3ubuntu1) ...
136s Selecting previously unselected package libmbedtls21:arm64.
136s Preparing to unpack .../211-libmbedtls21_3.6.2-3ubuntu1_arm64.deb ...
136s Unpacking libmbedtls21:arm64 (3.6.2-3ubuntu1) ...
136s Selecting previously unselected package ncbi-vdb-data.
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136s Unpacking ncbi-vdb-data (3.2.1+dfsg-2) ...
136s Selecting previously unselected package libncbi-vdb3:arm64.
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136s Unpacking libncbi-vdb3:arm64 (3.2.1+dfsg-2) ...
136s Selecting previously unselected package libncbi-ngs3:arm64.
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136s Unpacking libncbi-ngs3:arm64 (3.2.1+dfsg-4ubuntu5) ...
136s Selecting previously unselected package libngs-jni:arm64.
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136s Unpacking libngs-jni:arm64 (3.2.1+dfsg-4ubuntu5) ...
137s Selecting previously unselected package libngs-java:arm64.
137s Preparing to unpack .../216-libngs-java_3.2.1+dfsg-4ubuntu5_arm64.deb ...
137s Unpacking libngs-java:arm64 (3.2.1+dfsg-4ubuntu5) ...
137s Selecting previously unselected package librhino-java.
137s Preparing to unpack .../217-librhino-java_1.7.15-1_all.deb ...
137s Unpacking librhino-java (1.7.15-1) ...
137s Selecting previously unselected package libhtsjdk-java.
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137s Unpacking libhtsjdk-java (4.1.3+dfsg-2) ...
137s Selecting previously unselected package libla4j-java.
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137s Unpacking libla4j-java (0.6.0-4) ...
137s Selecting previously unselected package libgatk-native-bindings-java.
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137s Unpacking libgatk-native-bindings-java (1.0.0+dfsg-2) ...
137s Selecting previously unselected package libgkl-java.
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137s Unpacking libgkl-java (0.8.11+dfsg-2build1) ...
137s Selecting previously unselected package libpicard-java.
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137s Unpacking libpicard-java (3.3.0+dfsg-2) ...
137s Selecting previously unselected package libyaml-snake-java.
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137s Unpacking libyaml-snake-java (2.5+ds-1) ...
137s Selecting previously unselected package unzip.
137s Preparing to unpack .../224-unzip_6.0-28ubuntu7_arm64.deb ...
137s Unpacking unzip (6.0-28ubuntu7) ...
137s Selecting previously unselected package java-wrappers.
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137s Unpacking java-wrappers (0.5) ...
137s Selecting previously unselected package picard-tools.
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137s Unpacking picard-tools (3.3.0+dfsg-2) ...
137s Selecting previously unselected package drop-seq-tools.
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137s Unpacking drop-seq-tools (3.0.2+dfsg-1) ...
137s Selecting previously unselected package libhtscodecs2:arm64.
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137s Unpacking libhtscodecs2:arm64 (1.6.1-2) ...
137s Selecting previously unselected package libhts3t64:arm64.
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137s Unpacking libhts3t64:arm64 (1.21+ds-1) ...
137s Selecting previously unselected package samtools.
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137s Unpacking samtools (1.21-1) ...
137s Setting up libhtscodecs2:arm64 (1.6.1-2) ...
137s Setting up libgraphite2-3:arm64 (1.3.14-2ubuntu1) ...
137s Setting up libxcb-dri3-0:arm64 (1.17.0-2build1) ...
137s Setting up liblcms2-2:arm64 (2.16-2) ...
137s Setting up libpixman-1-0:arm64 (0.44.0-3) ...
137s Setting up libfastutil-java (8.5.15+dfsg-1) ...
137s Setting up libjackson2-annotations-java (2.14.0-1) ...
137s Setting up libdtd-parser-java (1.2-1) ...
137s Setting up libsharpyuv0:arm64 (1.5.0-0.1) ...
137s Setting up libx11-xcb1:arm64 (2:1.8.12-1build1) ...
137s Setting up libslf4j-java (1.7.32-2) ...
137s Setting up libplexus-utils2-java (3.4.2-1) ...
137s Setting up libplexus-classworlds-java (2.7.0-1) ...
137s Setting up libxdamage1:arm64 (1:1.1.6-1build1) ...
137s Setting up libxcb-xfixes0:arm64 (1.17.0-2build1) ...
137s Setting up liblerc4:arm64 (4.0.0+ds-5ubuntu1) ...
137s Setting up libjsr305-java (0.1~+svn49-12) ...
137s Setting up hicolor-icon-theme (0.18-2) ...
137s Setting up libxi6:arm64 (2:1.8.2-1) ...
137s Setting up libgatk-native-bindings-java (1.0.0+dfsg-2) ...
137s Setting up java-common (0.76) ...
137s Setting up libxrender1:arm64 (1:0.9.12-1) ...
137s Setting up libdatrie1:arm64 (0.2.13-4) ...
137s Setting up libqdox2-java (2.0.3-1) ...
137s Setting up libla4j-java (0.6.0-4) ...
137s Setting up libaopalliance-java (20070526-7) ...
137s Setting up libcommons-cli-java (1.6.0-1) ...
137s Setting up libjheaps-java (0.14-2) ...
137s Setting up libcommons-exec-java (1.3-3) ...
137s Setting up libvecmath-java (1.5.2-7) ...
137s Setting up libxcb-render0:arm64 (1.17.0-2build1) ...
137s Setting up libglvnd0:arm64 (1.7.0-1build2) ...
137s Setting up libgoogle-gson-java (2.10.1-1) ...
137s Setting up libxcb-glx0:arm64 (1.17.0-2build1) ...
137s Setting up unzip (6.0-28ubuntu7) ...
137s Setting up libgdk-pixbuf2.0-common (2.44.4+dfsg-1) ...
137s Setting up libasm-java (9.8-1) ...
137s Setting up x11-common (1:7.7+24ubuntu1) ...
138s Setting up libdeflate0:arm64 (1.23-2) ...
138s Setting up liblog4j1.2-java (1.2.17-11) ...
138s Setting up libplexus-component-annotations-java (2.1.1-1) ...
138s Setting up libantlr4-runtime-java (4.9.2-3) ...
138s Setting up libxcb-shm0:arm64 (1.17.0-2build1) ...
138s Setting up libjson-simple-java (2.3.0-2) ...
138s Setting up libjbig0:arm64 (2.1-6.1ubuntu2) ...
138s Setting up libcolord2:arm64 (1.4.7-3build1) ...
138s Setting up drop-seq-testdata (3.0.2+dfsg-1) ...
138s Setting up libxxf86vm1:arm64 (1:1.1.4-1build4) ...
138s Setting up libsnappy1v5:arm64 (1.2.2-1) ...
138s Setting up libexec-maven-plugin-java (3.1.0-2) ...
138s Setting up libxcb-present0:arm64 (1.17.0-2build1) ...
138s Setting up libdconf1:arm64 (0.49.0-1) ...
138s Setting up libgeronimo-annotation-1.3-spec-java (1.3-1) ...
138s Setting up libgeronimo-interceptor-3.0-spec-java (1.0.1-5fakesync) ...
138s Setting up libcommons-collections3-java (3.2.2-3) ...
138s Setting up libasound2-data (1.2.14-1ubuntu1) ...
138s Setting up librhino-java (1.7.15-1) ...
138s Setting up libasound2t64:arm64 (1.2.14-1ubuntu1) ...
138s Setting up libjaxen-java (1.1.6-5) ...
138s Setting up libepoxy0:arm64 (1.5.10-2) ...
138s Setting up libnspr4:arm64 (2:4.36-1ubuntu2) ...
138s Setting up libxfixes3:arm64 (1:6.0.0-2build1) ...
138s Setting up libxcb-sync1:arm64 (1.17.0-2build1) ...
138s Setting up libapache-pom-java (33-2) ...
138s Setting up libavahi-common-data:arm64 (0.8-16ubuntu3) ...
138s Setting up libatinject-jsr330-api-java (1.0+ds1-6) ...
138s Setting up libatspi2.0-0t64:arm64 (2.57.1-1) ...
138s Setting up libxinerama1:arm64 (2:1.1.4-3build1) ...
138s Setting up libplexus-interpolation-java (1.27-1) ...
138s Setting up fonts-dejavu-mono (2.37-8) ...
138s Setting up libitext5-java (5.5.13.3-4) ...
138s Setting up libxml-commons-resolver1.1-java (1.2-11) ...
138s Setting up libxz-java (1.9-1) ...
138s Setting up libxrandr2:arm64 (2:1.5.4-1) ...
138s Setting up fonts-dejavu-core (2.37-8) ...
138s Setting up libpcsclite1:arm64 (2.3.3-1) ...
138s Setting up libmongodb-java (3.6.3-2) ...
138s Setting up libjpeg-turbo8:arm64 (2.1.5-4ubuntu2) ...
138s Setting up libactivation-java (1.2.0-2) ...
138s Setting up libhamcrest-java (2.2-2) ...
138s Setting up libvulkan1:arm64 (1.4.321.0-1) ...
138s Setting up libapfloat-java (1.14.0-2) ...
138s Setting up libwebp7:arm64 (1.5.0-0.1) ...
138s Setting up libgif7:arm64 (5.2.2-1ubuntu2) ...
138s Setting up libfreemarker-java (2.3.32-2.1) ...
138s Setting up libxshmfence1:arm64 (1.3.3-1) ...
138s Setting up libjsoup-java (1.15.3-1) ...
138s Setting up at-spi2-common (2.57.1-1) ...
138s Setting up libcommons-math-java (2.2-9) ...
138s Setting up libxcb-randr0:arm64 (1.17.0-2build1) ...
138s Setting up libxml-commons-external-java (1.4.01-6) ...
138s Setting up libxbean-reflect-java (4.5-9) ...
138s Setting up libjackson2-core-java (2.14.1-1) ...
138s Setting up libhts3t64:arm64 (1.21+ds-1) ...
138s Setting up libharfbuzz0b:arm64 (12.1.0-1) ...
138s Setting up ncbi-vdb-data (3.2.1+dfsg-2) ...
138s Setting up libthai-data (0.1.29-2build1) ...
138s Setting up libcommons-math3-java (3.6.1-4) ...
138s Setting up libwayland-egl1:arm64 (1.24.0-1build1) ...
138s Setting up libmbedcrypto16:arm64 (3.6.2-3ubuntu1) ...
138s Setting up libhttpcore-java (4.4.16-1) ...
138s Setting up libjoptsimple-java (5.0.4-7) ...
138s Setting up ca-certificates-java (20240118) ...
138s No JRE found. Skipping Java certificates setup.
138s Setting up libxerces2-java (2.12.2-1) ...
138s Setting up librelaxng-datatype-java (1.0+ds1-4) ...
138s Setting up libyaml-snake-java (2.5+ds-1) ...
138s Setting up libinchi1.07 (1.07.3+dfsg-1) ...
138s Setting up libcdi-api-java (1.2-4) ...
138s Setting up libsnappy-jni (1.1.10.7-1) ...
138s Setting up libezmorph-java (1.0.6-4) ...
138s Setting up libxcomposite1:arm64 (1:0.4.6-1) ...
138s Setting up libargs4j-java (2.33-2) ...
138s Setting up libdrm-amdgpu1:arm64 (2.4.127-1ubuntu1) ...
138s Setting up libnaga-java (3.0+svn80-5) ...
138s Setting up libwayland-client0:arm64 (1.24.0-1build1) ...
138s Setting up libjpeg8:arm64 (8c-2ubuntu11) ...
138s Setting up libdom4j-java (2.1.4-1) ...
138s Setting up libjaxb-api-java (2.3.1-1) ...
138s Setting up libwagon-provider-api-java (3.5.3-2) ...
138s Setting up mesa-libgallium:arm64 (25.2.3-1ubuntu1) ...
138s Setting up java-wrappers (0.5) ...
138s Setting up libatk1.0-0t64:arm64 (2.57.1-1) ...
138s Setting up libplexus-languages-java (1.1.1-3) ...
138s Setting up libgbm1:arm64 (25.2.3-1ubuntu1) ...
138s Setting up fontconfig-config (2.15.0-2.3ubuntu1) ...
139s Setting up libstax-ex-java (1.7.8-3) ...
139s Setting up libxtst6:arm64 (2:1.2.5-1) ...
139s Setting up libxcursor1:arm64 (1:1.2.3-1) ...
139s Setting up libmaven-parent-java (43-2) ...
139s Setting up libgl1-mesa-dri:arm64 (25.2.3-1ubuntu1) ...
139s Setting up libcommons-parent-java (56-1) ...
139s Setting up libavahi-common3:arm64 (0.8-16ubuntu3) ...
139s Setting up libcommons-logging-java (1.3.0-1ubuntu1) ...
139s Setting up libsisu-inject-java (0.3.5-1) ...
139s Setting up dconf-service (0.49.0-1) ...
139s Setting up libnss3:arm64 (2:3.114-1) ...
139s Setting up libciftools-java (7.0.1-1) ...
139s Setting up libxom-java (1.3.9-1) ...
139s Setting up libcommons-lang-java (2.6-11) ...
139s Setting up libjackson2-databind-java (2.14.0+ds-1) ...
139s Setting up libplexus-cipher-java (2.0-1) ...
139s Setting up samtools (1.21-1) ...
139s Setting up libcommons-jexl2-java (2.1.1-6) ...
139s Setting up libthai0:arm64 (0.1.29-2build1) ...
139s Setting up libsisu-plexus-java (0.3.5-1) ...
139s Setting up libmbedx509-7:arm64 (3.6.2-3ubuntu1) ...
139s Setting up libstreambuffer-java (1.5.4-1.1) ...
139s Setting up libcommons-collections4-java (4.4-2) ...
139s Setting up libcommons-lang3-java (3.17.0-1) ...
139s Setting up libmbedtls21:arm64 (3.6.2-3ubuntu1) ...
139s Setting up librngom-java (2.3.0.1-11) ...
139s Setting up libjni-inchi-jni (0.8+dfsg-8) ...
139s Setting up libjgraphx-java (2.1.0.7-5) ...
139s Setting up libtiff6:arm64 (4.7.0-3ubuntu3) ...
139s Setting up libwayland-cursor0:arm64 (1.24.0-1build1) ...
139s Setting up libcommons-beanutils-java (1.10.1-1.1) ...
139s Setting up libplexus-sec-dispatcher-java (2.0-3) ...
139s Setting up libgdk-pixbuf-2.0-0:arm64 (2.44.4+dfsg-1) ...
139s Setting up libsnappy-java (1.1.10.7-1) ...
139s Setting up libfontconfig1:arm64 (2.15.0-2.3ubuntu1) ...
139s Setting up libxsom-java (2.3.0.1-11) ...
139s Setting up libcommons-codec-java (1.18.0-1) ...
139s Setting up libavahi-client3:arm64 (0.8-16ubuntu3) ...
139s Setting up libatk-bridge2.0-0t64:arm64 (2.57.1-1) ...
139s Setting up gtk-update-icon-cache (4.20.2+ds-1) ...
139s Setting up fontconfig (2.15.0-2.3ubuntu1) ...
141s Regenerating fonts cache... done.
141s Setting up libglx-mesa0:arm64 (25.2.3-1ubuntu1) ...
141s Setting up openjdk-21-jre-headless:arm64 (21.0.9+10-1) ...
141s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/java to provide /usr/bin/java (java) in auto mode
141s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode
141s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode
141s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode
141s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode
141s Setting up libglx0:arm64 (1.7.0-1build2) ...
141s Setting up dconf-gsettings-backend:arm64 (0.49.0-1) ...
141s Setting up libcommons-io-java (2.19.0-1) ...
141s Setting up libpango-1.0-0:arm64 (1.56.3-2) ...
141s Setting up libncbi-vdb3:arm64 (3.2.1+dfsg-2) ...
141s Setting up libcairo2:arm64 (1.18.4-1build1) ...
141s Setting up libmaven-resolver-java (1.9.22-1) ...
141s Setting up libgl1:arm64 (1.7.0-1build2) ...
141s Setting up adwaita-icon-theme (49.0-1) ...
141s update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode
141s Setting up libhttpclient-java (4.5.14-1) ...
141s Setting up liblightcouch-java (0.2.0-1) ...
141s Setting up libwagon-http-java (3.5.3-2) ...
141s Setting up libcairo-gobject2:arm64 (1.18.4-1build1) ...
141s Setting up libmaven-shared-utils-java (3.4.2-1) ...
141s Setting up libfastinfoset-java (1.2.12-4) ...
141s Setting up libpangoft2-1.0-0:arm64 (1.56.3-2) ...
141s Setting up libcups2t64:arm64 (2.4.12-0ubuntu3) ...
141s Setting up libgtk-3-common (3.24.50-1ubuntu2) ...
141s Setting up libpangocairo-1.0-0:arm64 (1.56.3-2) ...
141s Setting up libncbi-ngs3:arm64 (3.2.1+dfsg-4ubuntu5) ...
141s Setting up libngs-jni:arm64 (3.2.1+dfsg-4ubuntu5) ...
141s Setting up libplexus-io-java (3.3.1-2) ...
141s Setting up libcommons-compress-java (1.27.1-2) ...
141s Setting up liblog4j2-java (2.19.0-2) ...
141s Setting up libplexus-archiver-java (4.6.1-1) ...
141s Setting up libngs-java:arm64 (3.2.1+dfsg-4ubuntu5) ...
141s Setting up libbarclay-java (5.0.0+dfsg-1) ...
141s Setting up libmaven-archiver-java (3.6.2-1) ...
141s Setting up liberror-prone-java (2.18.0-1) ...
141s Setting up libguava-java (32.0.1-1) ...
141s Setting up libplexus-container-default-java (2.1.1-1) ...
141s Setting up libguice-java (5.1.0-1) ...
141s Setting up libmaven3-core-java (3.9.9-1) ...
141s Setting up libmaven-shared-incremental-java (1.1-6) ...
141s Setting up libmaven-shared-io-java (3.0.0-4) ...
141s Setting up libplexus-compiler-java (2.13.0-1) ...
141s Setting up libmaven-compiler-plugin-java (3.13.0-1) ...
141s Setting up libjni-inchi-java (0.8+dfsg-8) ...
141s Setting up libmaven-file-management-java (3.0.0-2) ...
141s Setting up libjmol-java (16.2.33+dfsg-1) ...
141s Setting up libmaven-jar-plugin-java (3.3.0-2) ...
141s Setting up libcommons-text-java (1.13.1-1) ...
141s Setting up libmsgpack-java (0.9.6-1) ...
141s Setting up libmmtf-java (1.0.11-1) ...
141s Setting up libjgrapht-java (1.5.2-1) ...
141s Processing triggers for libc-bin (2.42-0ubuntu3) ...
141s Processing triggers for man-db (2.13.1-1) ...
142s Processing triggers for libglib2.0-0t64:arm64 (2.86.1-1) ...
142s Setting up libgtk-3-0t64:arm64 (3.24.50-1ubuntu2) ...
142s Processing triggers for ca-certificates-java (20240118) ...
143s Adding debian:ACCVRAIZ1.pem
143s Adding debian:AC_RAIZ_FNMT-RCM.pem
143s Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem
143s Adding debian:ANF_Secure_Server_Root_CA.pem
143s Adding debian:Actalis_Authentication_Root_CA.pem
143s Adding debian:AffirmTrust_Commercial.pem
143s Adding debian:AffirmTrust_Networking.pem
143s Adding debian:AffirmTrust_Premium.pem
143s Adding debian:AffirmTrust_Premium_ECC.pem
143s Adding debian:Amazon_Root_CA_1.pem
143s Adding debian:Amazon_Root_CA_2.pem
143s Adding debian:Amazon_Root_CA_3.pem
143s Adding debian:Amazon_Root_CA_4.pem
143s Adding debian:Atos_TrustedRoot_2011.pem
143s Adding debian:Atos_TrustedRoot_Root_CA_ECC_TLS_2021.pem
143s Adding debian:Atos_TrustedRoot_Root_CA_RSA_TLS_2021.pem
143s Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem
143s Adding debian:BJCA_Global_Root_CA1.pem
143s Adding debian:BJCA_Global_Root_CA2.pem
143s Adding debian:Baltimore_CyberTrust_Root.pem
143s Adding debian:Buypass_Class_2_Root_CA.pem
143s Adding debian:Buypass_Class_3_Root_CA.pem
143s Adding debian:CA_Disig_Root_R2.pem
143s Adding debian:CFCA_EV_ROOT.pem
143s Adding debian:COMODO_Certification_Authority.pem
143s Adding debian:COMODO_ECC_Certification_Authority.pem
143s Adding debian:COMODO_RSA_Certification_Authority.pem
143s Adding debian:Certainly_Root_E1.pem
143s Adding debian:Certainly_Root_R1.pem
143s Adding debian:Certigna.pem
143s Adding debian:Certigna_Root_CA.pem
143s Adding debian:Certum_EC-384_CA.pem
143s Adding debian:Certum_Trusted_Network_CA.pem
143s Adding debian:Certum_Trusted_Network_CA_2.pem
143s Adding debian:Certum_Trusted_Root_CA.pem
143s Adding debian:CommScope_Public_Trust_ECC_Root-01.pem
143s Adding debian:CommScope_Public_Trust_ECC_Root-02.pem
143s Adding debian:CommScope_Public_Trust_RSA_Root-01.pem
143s Adding debian:CommScope_Public_Trust_RSA_Root-02.pem
143s Adding debian:Comodo_AAA_Services_root.pem
143s Adding debian:D-TRUST_BR_Root_CA_1_2020.pem
143s Adding debian:D-TRUST_BR_Root_CA_2_2023.pem
143s Adding debian:D-TRUST_EV_Root_CA_1_2020.pem
143s Adding debian:D-TRUST_EV_Root_CA_2_2023.pem
143s Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem
143s Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem
144s Adding debian:DigiCert_Assured_ID_Root_CA.pem
144s Adding debian:DigiCert_Assured_ID_Root_G2.pem
144s Adding debian:DigiCert_Assured_ID_Root_G3.pem
144s Adding debian:DigiCert_Global_Root_CA.pem
144s Adding debian:DigiCert_Global_Root_G2.pem
144s Adding debian:DigiCert_Global_Root_G3.pem
144s Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem
144s Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem
144s Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem
144s Adding debian:DigiCert_Trusted_Root_G4.pem
144s Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem
144s Adding debian:Entrust_Root_Certification_Authority.pem
144s Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem
144s Adding debian:Entrust_Root_Certification_Authority_-_G2.pem
144s Adding debian:FIRMAPROFESIONAL_CA_ROOT-A_WEB.pem
144s Adding debian:GDCA_TrustAUTH_R5_ROOT.pem
144s Adding debian:GLOBALTRUST_2020.pem
144s Adding debian:GTS_Root_R1.pem
144s Adding debian:GTS_Root_R2.pem
144s Adding debian:GTS_Root_R3.pem
144s Adding debian:GTS_Root_R4.pem
144s Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem
144s Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem
144s Adding debian:GlobalSign_Root_CA.pem
144s Adding debian:GlobalSign_Root_CA_-_R3.pem
144s Adding debian:GlobalSign_Root_CA_-_R6.pem
144s Adding debian:GlobalSign_Root_E46.pem
144s Adding debian:GlobalSign_Root_R46.pem
144s Adding debian:Go_Daddy_Class_2_CA.pem
144s Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem
144s Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem
144s Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem
144s Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem
144s Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem
144s Adding debian:HiPKI_Root_CA_-_G1.pem
144s Adding debian:Hongkong_Post_Root_CA_3.pem
144s Adding debian:ISRG_Root_X1.pem
144s Adding debian:ISRG_Root_X2.pem
144s Adding debian:IdenTrust_Commercial_Root_CA_1.pem
144s Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem
144s Adding debian:Izenpe.com.pem
144s Adding debian:Microsec_e-Szigno_Root_CA_2009.pem
144s Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem
144s Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem
144s Adding debian:NAVER_Global_Root_Certification_Authority.pem
144s Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem
144s Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem
144s Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem
144s Adding debian:QuoVadis_Root_CA_1_G3.pem
144s Adding debian:QuoVadis_Root_CA_2.pem
144s Adding debian:QuoVadis_Root_CA_2_G3.pem
144s Adding debian:QuoVadis_Root_CA_3.pem
144s Adding debian:QuoVadis_Root_CA_3_G3.pem
144s Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem
144s Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem
144s Adding debian:SSL.com_Root_Certification_Authority_ECC.pem
144s Adding debian:SSL.com_Root_Certification_Authority_RSA.pem
144s Adding debian:SSL.com_TLS_ECC_Root_CA_2022.pem
144s Adding debian:SSL.com_TLS_RSA_Root_CA_2022.pem
144s Adding debian:SZAFIR_ROOT_CA2.pem
144s Adding debian:Sectigo_Public_Server_Authentication_Root_E46.pem
144s Adding debian:Sectigo_Public_Server_Authentication_Root_R46.pem
144s Adding debian:SecureSign_Root_CA12.pem
144s Adding debian:SecureSign_Root_CA14.pem
144s Adding debian:SecureSign_Root_CA15.pem
144s Adding debian:SecureTrust_CA.pem
144s Adding debian:Secure_Global_CA.pem
144s Adding debian:Security_Communication_ECC_RootCA1.pem
144s Adding debian:Security_Communication_RootCA2.pem
144s Adding debian:Starfield_Class_2_CA.pem
144s Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem
144s Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem
144s Adding debian:SwissSign_Gold_CA_-_G2.pem
144s Adding debian:T-TeleSec_GlobalRoot_Class_2.pem
144s Adding debian:T-TeleSec_GlobalRoot_Class_3.pem
144s Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem
144s Adding debian:TWCA_CYBER_Root_CA.pem
144s Adding debian:TWCA_Global_Root_CA.pem
144s Adding debian:TWCA_Root_Certification_Authority.pem
144s Adding debian:Telekom_Security_TLS_ECC_Root_2020.pem
144s Adding debian:Telekom_Security_TLS_RSA_Root_2023.pem
144s Adding debian:TeliaSonera_Root_CA_v1.pem
144s Adding debian:Telia_Root_CA_v2.pem
144s Adding debian:TrustAsia_Global_Root_CA_G3.pem
144s Adding debian:TrustAsia_Global_Root_CA_G4.pem
144s Adding debian:Trustwave_Global_Certification_Authority.pem
144s Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem
144s Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem
144s Adding debian:TunTrust_Root_CA.pem
144s Adding debian:UCA_Extended_Validation_Root.pem
144s Adding debian:UCA_Global_G2_Root.pem
144s Adding debian:USERTrust_ECC_Certification_Authority.pem
144s Adding debian:USERTrust_RSA_Certification_Authority.pem
144s Adding debian:XRamp_Global_CA_Root.pem
144s Adding debian:certSIGN_ROOT_CA.pem
144s Adding debian:certSIGN_Root_CA_G2.pem
144s Adding debian:e-Szigno_Root_CA_2017.pem
144s Adding debian:ePKI_Root_Certification_Authority.pem
144s Adding debian:emSign_ECC_Root_CA_-_C3.pem
144s Adding debian:emSign_ECC_Root_CA_-_G3.pem
144s Adding debian:emSign_Root_CA_-_C1.pem
144s Adding debian:emSign_Root_CA_-_G1.pem
144s Adding debian:vTrus_ECC_Root_CA.pem
144s Adding debian:vTrus_Root_CA.pem
144s done.
144s Setting up junit4 (4.13.2-5) ...
144s Setting up default-jre-headless (2:1.21-76) ...
144s Setting up openjdk-21-jre:arm64 (21.0.9+10-1) ...
144s Setting up ant (1.10.15-1) ...
144s Setting up libjson-java (3.1.0+dfsg-2) ...
144s Setting up libhtsjdk-java (4.1.3+dfsg-2) ...
144s Setting up libgkl-java (0.8.11+dfsg-2build1) ...
144s Setting up default-jre (2:1.21-76) ...
144s Setting up ant-optional (1.10.15-1) ...
144s Setting up libpicard-java (3.3.0+dfsg-2) ...
144s Setting up libistack-commons-java (3.0.6-5) ...
144s Setting up picard-tools (3.3.0+dfsg-2) ...
144s Setting up libcodemodel-java (2.6+jaxb2.3.0.1-11) ...
144s Setting up libtxw2-java (2.3.0.1-11) ...
144s Setting up libjaxb-java (2.3.0.1-11) ...
144s Setting up libbiojava6-java (6.1.0+dfsg-5) ...
144s Setting up drop-seq-tools (3.0.2+dfsg-1) ...
144s Processing triggers for libc-bin (2.42-0ubuntu3) ...
145s autopkgtest [22:55:09]: test run-unit-test: [-----------------------
145s Test 1
145s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
146s INFO	2025-10-30 22:55:10	FilterBam	
146s 
146s ********** NOTE: Picard's command line syntax is changing.
146s **********
146s ********** For more information, please see:
146s ********** 
146s https://github.com/broadinstitute/picard/wiki/Command-Line-Syntax-Transition-For-Users-(Pre-Transition)
146s **********
146s ********** The command line looks like this in the new syntax:
146s **********
146s **********    FilterBam -TAG_REJECT XQ -INPUT org/broadinstitute/dropseq/readtrimming/N701.subset.tagged_filtered.sam -OUTPUT out/FilterBam.bam
146s **********
146s 
146s 
146s 22:55:10.915 WARN  NativeLibraryLoader - OVERRIDE DEFAULT: Loading libgkl_compression.so from /usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib
146s 22:55:10.917 WARN  NativeLibraryLoader - LD_LIBRARY_PATH = null
146s 22:55:10.918 WARN  NativeLibraryLoader - OVERRIDE DEFAULT: Unable to load libgkl_compression.so from /usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib
146s 22:55:10.920 WARN  NativeLibraryLoader - OVERRIDE DEFAULT: Loading libgkl_compression.so from /usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib
146s 22:55:10.920 WARN  NativeLibraryLoader - LD_LIBRARY_PATH = null
146s 22:55:10.920 WARN  NativeLibraryLoader - OVERRIDE DEFAULT: Unable to load libgkl_compression.so from /usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib
146s [Thu Oct 30 22:55:10 UTC 2025] FilterBam INPUT=[org/broadinstitute/dropseq/readtrimming/N701.subset.tagged_filtered.sam] OUTPUT=out/FilterBam.bam TAG_REJECT=[XQ]    FILTER_PCR_DUPES=false RETAIN_ONLY_PRIMARY_READS=false DROP_REJECTED_REF=false VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false USE_JDK_DEFLATER=false USE_JDK_INFLATER=false
146s [Thu Oct 30 22:55:10 UTC 2025] Executing as ubuntu@autopkgtest on Linux 6.17.0-5-generic aarch64; OpenJDK 64-Bit Server VM 21.0.9+10-Ubuntu-1; Deflater: Jdk; Inflater: Jdk; Provider GCS is available; Picard version: 2.5.4()
146s 22:55:10.964 WARN  IntelDeflaterFactory - Intel Deflater not supported, using Java.util.zip.Deflater
147s INFO	2025-10-30 22:55:11	FilterBam	Total 995 reads processed.  995 reads accepted; 0 reads rejected.
147s [Thu Oct 30 22:55:11 UTC 2025] org.broadinstitute.dropseqrna.utils.FilterBam done. Elapsed time: 0.00 minutes.
147s Runtime.totalMemory()=142606336
147s Passed
147s 
147s Test 2
147s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
148s INFO	2025-10-30 22:55:12	TrimStartingSequence	
148s 
148s ********** NOTE: Picard's command line syntax is changing.
148s **********
148s ********** For more information, please see:
148s ********** 
148s https://github.com/broadinstitute/picard/wiki/Command-Line-Syntax-Transition-For-Users-(Pre-Transition)
148s **********
148s ********** The command line looks like this in the new syntax:
148s **********
148s **********    TrimStartingSequence -INPUT out/FilterBam.bam -OUTPUT out/TrimStartingSequence.bam -OUTPUT_SUMMARY out/TrimStartingSequence.summary.txt -SEQUENCE AAGCAGTGGTATCAACGCAGAGTGAATGGG -MISMATCHES 0 -NUM_BASES 5
148s **********
148s 
148s 
148s 22:55:12.111 WARN  NativeLibraryLoader - OVERRIDE DEFAULT: Loading libgkl_compression.so from /usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib
148s 22:55:12.113 WARN  NativeLibraryLoader - LD_LIBRARY_PATH = null
148s 22:55:12.114 WARN  NativeLibraryLoader - OVERRIDE DEFAULT: Unable to load libgkl_compression.so from /usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib
148s 22:55:12.115 WARN  NativeLibraryLoader - OVERRIDE DEFAULT: Loading libgkl_compression.so from /usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib
148s 22:55:12.115 WARN  NativeLibraryLoader - LD_LIBRARY_PATH = null
148s 22:55:12.115 WARN  NativeLibraryLoader - OVERRIDE DEFAULT: Unable to load libgkl_compression.so from /usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib
148s [Thu Oct 30 22:55:12 UTC 2025] TrimStartingSequence INPUT=out/FilterBam.bam OUTPUT=out/TrimStartingSequence.bam OUTPUT_SUMMARY=out/TrimStartingSequence.summary.txt SEQUENCE=AAGCAGTGGTATCAACGCAGAGTGAATGGG MISMATCHES=0 NUM_BASES=5    LEGACY=false TRIM_TAG=ZS VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false USE_JDK_DEFLATER=false USE_JDK_INFLATER=false
148s [Thu Oct 30 22:55:12 UTC 2025] Executing as ubuntu@autopkgtest on Linux 6.17.0-5-generic aarch64; OpenJDK 64-Bit Server VM 21.0.9+10-Ubuntu-1; Deflater: Jdk; Inflater: Jdk; Provider GCS is available; Picard version: 2.5.4()
148s 22:55:12.131 WARN  IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
148s 22:55:12.135 WARN  IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
148s 22:55:12.159 WARN  IntelDeflaterFactory - Intel Deflater not supported, using Java.util.zip.Deflater
148s INFO	2025-10-30 22:55:12	TrimStartingSequence	Number of reads trimmed: 210 total reads: 995
148s [Thu Oct 30 22:55:12 UTC 2025] org.broadinstitute.dropseqrna.readtrimming.TrimStartingSequence done. Elapsed time: 0.00 minutes.
148s Runtime.totalMemory()=142606336
148s Passed
148s 
148s Test 3
148s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
149s INFO	2025-10-30 22:55:13	PolyATrimmer	
149s 
149s ********** NOTE: Picard's command line syntax is changing.
149s **********
149s ********** For more information, please see:
149s ********** 
149s https://github.com/broadinstitute/picard/wiki/Command-Line-Syntax-Transition-For-Users-(Pre-Transition)
149s **********
149s ********** The command line looks like this in the new syntax:
149s **********
149s **********    PolyATrimmer -INPUT out/TrimStartingSequence.bam -OUTPUT out/PolyATrimmer.bam -OUTPUT_SUMMARY out/PolyATrimmer.summary.bam -MISMATCHES 0 -NUM_BASES 6 -USE_NEW_TRIMMER true
149s **********
149s 
149s 
149s 22:55:13.294 WARN  NativeLibraryLoader - OVERRIDE DEFAULT: Loading libgkl_compression.so from /usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib
149s 22:55:13.297 WARN  NativeLibraryLoader - LD_LIBRARY_PATH = null
149s 22:55:13.297 WARN  NativeLibraryLoader - OVERRIDE DEFAULT: Unable to load libgkl_compression.so from /usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib
149s 22:55:13.299 WARN  NativeLibraryLoader - OVERRIDE DEFAULT: Loading libgkl_compression.so from /usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib
149s 22:55:13.299 WARN  NativeLibraryLoader - LD_LIBRARY_PATH = null
149s 22:55:13.299 WARN  NativeLibraryLoader - OVERRIDE DEFAULT: Unable to load libgkl_compression.so from /usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib
149s [Thu Oct 30 22:55:13 UTC 2025] PolyATrimmer INPUT=out/TrimStartingSequence.bam OUTPUT=out/PolyATrimmer.bam OUTPUT_SUMMARY=out/PolyATrimmer.summary.bam USE_NEW_TRIMMER=true MISMATCHES=0 NUM_BASES=6    TRIM_TAG=ZP ADAPTER=~XM~XC MAX_ADAPTER_ERROR_RATE=0.1 MIN_ADAPTER_MATCH=4 MIN_POLY_A_LENGTH=20 MIN_POLY_A_LENGTH_NO_ADAPTER_MATCH=6 DUBIOUS_ADAPTER_MATCH_LENGTH=6 MAX_POLY_A_ERROR_RATE=0.1 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false USE_JDK_DEFLATER=false USE_JDK_INFLATER=false
149s [Thu Oct 30 22:55:13 UTC 2025] Executing as ubuntu@autopkgtest on Linux 6.17.0-5-generic aarch64; OpenJDK 64-Bit Server VM 21.0.9+10-Ubuntu-1; Deflater: Jdk; Inflater: Jdk; Provider GCS is available; Picard version: 2.5.4()
149s 22:55:13.313 WARN  IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
149s 22:55:13.317 WARN  IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
149s 22:55:13.337 WARN  IntelDeflaterFactory - Intel Deflater not supported, using Java.util.zip.Deflater
149s INFO	2025-10-30 22:55:13	PolyATrimmer	Total 995 reads processed.
149s INFO	2025-10-30 22:55:13	PolyATrimmer	Number of reads trimmed: 290
149s INFO	2025-10-30 22:55:13	PolyATrimmer	Number of reads completely trimmed: 6
149s [Thu Oct 30 22:55:13 UTC 2025] org.broadinstitute.dropseqrna.readtrimming.PolyATrimmer done. Elapsed time: 0.00 minutes.
149s Runtime.totalMemory()=142606336
149s Passed
149s 
149s autopkgtest [22:55:13]: test run-unit-test: -----------------------]
150s autopkgtest [22:55:14]: test run-unit-test:  - - - - - - - - - - results - - - - - - - - - -
150s run-unit-test        PASS
150s autopkgtest [22:55:14]: @@@@@@@@@@@@@@@@@@@@ summary
150s run-unit-test        PASS