0s autopkgtest [13:34:46]: starting date and time: 2025-11-17 13:34:46+0000 0s autopkgtest [13:34:46]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [13:34:46]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.rtbuhmef/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults --apt-upgrade cyvcf2 --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=python3-defaults/3.13.7-2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-arm64-10.secgroup --name adt-resolute-arm64-cyvcf2-20251117-133446-juju-7f2275-prod-proposed-migration-environment-20-c6ff9fdb-9c80-4b3b-a4f4-382e303ca76f --image adt/ubuntu-resolute-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 3s Creating nova instance adt-resolute-arm64-cyvcf2-20251117-133446-juju-7f2275-prod-proposed-migration-environment-20-c6ff9fdb-9c80-4b3b-a4f4-382e303ca76f from image adt/ubuntu-resolute-arm64-server-20251117.img (UUID 1cd33fbb-18df-4c5a-b8f0-2dcb25269485)... 60s autopkgtest [13:35:46]: testbed dpkg architecture: arm64 61s autopkgtest [13:35:47]: testbed apt version: 3.1.11 61s autopkgtest [13:35:47]: @@@@@@@@@@@@@@@@@@@@ test bed setup 61s autopkgtest [13:35:47]: testbed release detected to be: None 62s autopkgtest [13:35:48]: updating testbed package index (apt update) 62s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [87.8 kB] 62s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 63s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 63s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 63s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [868 kB] 63s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [22.9 kB] 63s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [81.1 kB] 63s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [9848 B] 63s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 Packages [149 kB] 63s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 c-n-f Metadata [3084 B] 63s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 Packages [107 kB] 63s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 c-n-f Metadata [324 B] 63s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 Packages [577 kB] 63s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 c-n-f Metadata [17.8 kB] 63s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 Packages [12.5 kB] 63s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 c-n-f Metadata [576 B] 64s Fetched 1938 kB in 1s (1816 kB/s) 65s Reading package lists... 66s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 66s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 66s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 66s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 67s Reading package lists... 67s Reading package lists... 67s Building dependency tree... 67s Reading state information... 67s Calculating upgrade... 68s The following packages will be upgraded: 68s libpython3-stdlib python3 python3-minimal usbutils 68s 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 68s Need to get 144 kB of archives. 68s After this operation, 0 B of additional disk space will be used. 68s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 python3-minimal arm64 3.13.7-2 [27.8 kB] 68s Get:2 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 python3 arm64 3.13.7-2 [23.9 kB] 68s Get:3 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 libpython3-stdlib arm64 3.13.7-2 [10.6 kB] 68s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 usbutils arm64 1:019-1 [81.7 kB] 68s dpkg-preconfigure: unable to re-open stdin: No such file or directory 68s Fetched 144 kB in 0s (327 kB/s) 69s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 88137 files and directories currently installed.) 69s Preparing to unpack .../python3-minimal_3.13.7-2_arm64.deb ... 69s Unpacking python3-minimal (3.13.7-2) over (3.13.7-1) ... 69s Setting up python3-minimal (3.13.7-2) ... 69s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 88137 files and directories currently installed.) 69s Preparing to unpack .../python3_3.13.7-2_arm64.deb ... 69s running python pre-rtupdate hooks for python3.13... 69s Unpacking python3 (3.13.7-2) over (3.13.7-1) ... 69s Preparing to unpack .../libpython3-stdlib_3.13.7-2_arm64.deb ... 69s Unpacking libpython3-stdlib:arm64 (3.13.7-2) over (3.13.7-1) ... 69s Preparing to unpack .../usbutils_1%3a019-1_arm64.deb ... 69s Unpacking usbutils (1:019-1) over (1:018-2) ... 69s Setting up usbutils (1:019-1) ... 69s Setting up libpython3-stdlib:arm64 (3.13.7-2) ... 69s Setting up python3 (3.13.7-2) ... 69s running python rtupdate hooks for python3.13... 69s running python post-rtupdate hooks for python3.13... 70s Processing triggers for man-db (2.13.1-1) ... 71s autopkgtest [13:35:57]: upgrading testbed (apt dist-upgrade and autopurge) 71s Reading package lists... 71s Building dependency tree... 71s Reading state information... 72s Calculating upgrade... 72s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 72s Reading package lists... 72s Building dependency tree... 72s Reading state information... 73s Solving dependencies... 73s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 76s autopkgtest [13:36:02]: testbed running kernel: Linux 6.17.0-5-generic #5-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 22 09:50:31 UTC 2025 76s autopkgtest [13:36:02]: @@@@@@@@@@@@@@@@@@@@ apt-source cyvcf2 78s Get:1 http://ftpmaster.internal/ubuntu resolute/universe cyvcf2 0.31.4-1 (dsc) [2498 B] 78s Get:2 http://ftpmaster.internal/ubuntu resolute/universe cyvcf2 0.31.4-1 (tar) [421 kB] 78s Get:3 http://ftpmaster.internal/ubuntu resolute/universe cyvcf2 0.31.4-1 (diff) [6836 B] 78s gpgv: Signature made Mon Nov 3 21:31:49 2025 UTC 78s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 78s gpgv: issuer "emollier@debian.org" 78s gpgv: Can't check signature: No public key 78s dpkg-source: warning: cannot verify inline signature for ./cyvcf2_0.31.4-1.dsc: no acceptable signature found 78s autopkgtest [13:36:04]: testing package cyvcf2 version 0.31.4-1 78s autopkgtest [13:36:04]: build not needed 79s autopkgtest [13:36:05]: test run-unit-test: preparing testbed 79s Reading package lists... 79s Building dependency tree... 79s Reading state information... 80s Solving dependencies... 80s The following NEW packages will be installed: 80s libblas3 libdeflate0 libgfortran5 libhts3t64 libhtscodecs2 liblapack3 80s libpython3.14-minimal libpython3.14-stdlib python3-all python3-click 80s python3-coloredlogs python3-cyvcf2 python3-humanfriendly python3-iniconfig 80s python3-numpy python3-numpy-dev python3-pluggy python3-pytest python3.14 80s python3.14-minimal 80s 0 upgraded, 20 newly installed, 0 to remove and 0 not upgraded. 80s Need to get 15.8 MB of archives. 80s After this operation, 65.9 MB of additional disk space will be used. 80s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-numpy-dev arm64 1:2.2.4+ds-1ubuntu1 [146 kB] 80s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 libblas3 arm64 3.12.1-7 [181 kB] 81s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 libgfortran5 arm64 15.2.0-7ubuntu1 [450 kB] 81s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 liblapack3 arm64 3.12.1-7 [2300 kB] 81s Get:5 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-numpy arm64 1:2.2.4+ds-1ubuntu1 [3986 kB] 81s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 libpython3.14-minimal arm64 3.14.0-4 [903 kB] 81s Get:7 http://ftpmaster.internal/ubuntu resolute/main arm64 python3.14-minimal arm64 3.14.0-4 [2543 kB] 82s Get:8 http://ftpmaster.internal/ubuntu resolute/main arm64 libdeflate0 arm64 1.23-2 [46.4 kB] 82s Get:9 http://ftpmaster.internal/ubuntu resolute/universe arm64 libhtscodecs2 arm64 1.6.1-2 [82.7 kB] 82s Get:10 http://ftpmaster.internal/ubuntu resolute/universe arm64 libhts3t64 arm64 1.22.1+ds2-1 [442 kB] 82s Get:11 http://ftpmaster.internal/ubuntu resolute/main arm64 libpython3.14-stdlib arm64 3.14.0-4 [2349 kB] 82s Get:12 http://ftpmaster.internal/ubuntu resolute/main arm64 python3.14 arm64 3.14.0-4 [805 kB] 82s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 python3-all arm64 3.13.7-2 [890 B] 82s Get:14 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-click all 8.2.0+0.really.8.1.8-1 [80.0 kB] 82s Get:15 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-humanfriendly all 10.0-6 [70.8 kB] 82s Get:16 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-coloredlogs all 15.0.1-1 [38.2 kB] 82s Get:17 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-cyvcf2 arm64 0.31.4-1 [1046 kB] 82s Get:18 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-iniconfig all 2.1.0-1 [6840 B] 82s Get:19 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pluggy all 1.6.0-1 [21.0 kB] 82s Get:20 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pytest all 8.3.5-2 [252 kB] 82s Fetched 15.8 MB in 2s (8220 kB/s) 82s Selecting previously unselected package python3-numpy-dev:arm64. 82s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 88137 files and directories currently installed.) 82s Preparing to unpack .../00-python3-numpy-dev_1%3a2.2.4+ds-1ubuntu1_arm64.deb ... 82s Unpacking python3-numpy-dev:arm64 (1:2.2.4+ds-1ubuntu1) ... 82s Selecting previously unselected package libblas3:arm64. 82s Preparing to unpack .../01-libblas3_3.12.1-7_arm64.deb ... 82s Unpacking libblas3:arm64 (3.12.1-7) ... 82s Selecting previously unselected package libgfortran5:arm64. 83s Preparing to unpack .../02-libgfortran5_15.2.0-7ubuntu1_arm64.deb ... 83s Unpacking libgfortran5:arm64 (15.2.0-7ubuntu1) ... 83s Selecting previously unselected package liblapack3:arm64. 83s Preparing to unpack .../03-liblapack3_3.12.1-7_arm64.deb ... 83s Unpacking liblapack3:arm64 (3.12.1-7) ... 83s Selecting previously unselected package python3-numpy. 83s Preparing to unpack .../04-python3-numpy_1%3a2.2.4+ds-1ubuntu1_arm64.deb ... 83s Unpacking python3-numpy (1:2.2.4+ds-1ubuntu1) ... 83s Selecting previously unselected package libpython3.14-minimal:arm64. 83s Preparing to unpack .../05-libpython3.14-minimal_3.14.0-4_arm64.deb ... 83s Unpacking libpython3.14-minimal:arm64 (3.14.0-4) ... 83s Selecting previously unselected package python3.14-minimal. 83s Preparing to unpack .../06-python3.14-minimal_3.14.0-4_arm64.deb ... 83s Unpacking python3.14-minimal (3.14.0-4) ... 83s Selecting previously unselected package libdeflate0:arm64. 83s Preparing to unpack .../07-libdeflate0_1.23-2_arm64.deb ... 83s Unpacking libdeflate0:arm64 (1.23-2) ... 83s Selecting previously unselected package libhtscodecs2:arm64. 83s Preparing to unpack .../08-libhtscodecs2_1.6.1-2_arm64.deb ... 83s Unpacking libhtscodecs2:arm64 (1.6.1-2) ... 83s Selecting previously unselected package libhts3t64:arm64. 83s Preparing to unpack .../09-libhts3t64_1.22.1+ds2-1_arm64.deb ... 83s Unpacking libhts3t64:arm64 (1.22.1+ds2-1) ... 83s Selecting previously unselected package libpython3.14-stdlib:arm64. 83s Preparing to unpack .../10-libpython3.14-stdlib_3.14.0-4_arm64.deb ... 83s Unpacking libpython3.14-stdlib:arm64 (3.14.0-4) ... 83s Selecting previously unselected package python3.14. 83s Preparing to unpack .../11-python3.14_3.14.0-4_arm64.deb ... 83s Unpacking python3.14 (3.14.0-4) ... 83s Selecting previously unselected package python3-all. 83s Preparing to unpack .../12-python3-all_3.13.7-2_arm64.deb ... 83s Unpacking python3-all (3.13.7-2) ... 83s Selecting previously unselected package python3-click. 83s Preparing to unpack .../13-python3-click_8.2.0+0.really.8.1.8-1_all.deb ... 83s Unpacking python3-click (8.2.0+0.really.8.1.8-1) ... 83s Selecting previously unselected package python3-humanfriendly. 83s Preparing to unpack .../14-python3-humanfriendly_10.0-6_all.deb ... 83s Unpacking python3-humanfriendly (10.0-6) ... 83s Selecting previously unselected package python3-coloredlogs. 83s Preparing to unpack .../15-python3-coloredlogs_15.0.1-1_all.deb ... 83s Unpacking python3-coloredlogs (15.0.1-1) ... 83s Selecting previously unselected package python3-cyvcf2. 83s Preparing to unpack .../16-python3-cyvcf2_0.31.4-1_arm64.deb ... 83s Unpacking python3-cyvcf2 (0.31.4-1) ... 83s Selecting previously unselected package python3-iniconfig. 83s Preparing to unpack .../17-python3-iniconfig_2.1.0-1_all.deb ... 83s Unpacking python3-iniconfig (2.1.0-1) ... 83s Selecting previously unselected package python3-pluggy. 84s Preparing to unpack .../18-python3-pluggy_1.6.0-1_all.deb ... 84s Unpacking python3-pluggy (1.6.0-1) ... 84s Selecting previously unselected package python3-pytest. 84s Preparing to unpack .../19-python3-pytest_8.3.5-2_all.deb ... 84s Unpacking python3-pytest (8.3.5-2) ... 84s Setting up libhtscodecs2:arm64 (1.6.1-2) ... 84s Setting up python3-iniconfig (2.1.0-1) ... 84s Setting up libpython3.14-minimal:arm64 (3.14.0-4) ... 84s Setting up libdeflate0:arm64 (1.23-2) ... 84s Setting up python3-click (8.2.0+0.really.8.1.8-1) ... 84s Setting up libblas3:arm64 (3.12.1-7) ... 84s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 84s Setting up python3-humanfriendly (10.0-6) ... 85s /usr/lib/python3/dist-packages/humanfriendly/testing.py:546: SyntaxWarning: 'return' in a 'finally' block 85s return super(MockedProgram, self).__exit__(*args, **kw) 85s Setting up python3-numpy-dev:arm64 (1:2.2.4+ds-1ubuntu1) ... 85s Setting up libgfortran5:arm64 (15.2.0-7ubuntu1) ... 85s Setting up python3-pluggy (1.6.0-1) ... 85s Setting up libhts3t64:arm64 (1.22.1+ds2-1) ... 85s Setting up python3-coloredlogs (15.0.1-1) ... 85s Setting up python3.14-minimal (3.14.0-4) ... 86s Setting up liblapack3:arm64 (3.12.1-7) ... 86s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 86s Setting up libpython3.14-stdlib:arm64 (3.14.0-4) ... 86s Setting up python3-pytest (8.3.5-2) ... 87s Setting up python3-numpy (1:2.2.4+ds-1ubuntu1) ... 91s Setting up python3.14 (3.14.0-4) ... 92s Setting up python3-all (3.13.7-2) ... 92s Setting up python3-cyvcf2 (0.31.4-1) ... 92s Processing triggers for systemd (257.9-0ubuntu2) ... 92s Processing triggers for man-db (2.13.1-1) ... 93s Processing triggers for libc-bin (2.42-2ubuntu2) ... 94s autopkgtest [13:36:20]: test run-unit-test: [----------------------- 94s Testing with python3.14 in /tmp/autopkgtest.UwqyeL/autopkgtest_tmp: 94s ============================= test session starts ============================== 94s platform linux -- Python 3.14.0, pytest-8.3.5, pluggy-1.6.0 -- /usr/bin/python3.14 94s cachedir: .pytest_cache 94s rootdir: /tmp/autopkgtest.UwqyeL/autopkgtest_tmp 94s plugins: typeguard-4.4.2 95s collecting ... collected 0 items / 4 errors 95s 95s ==================================== ERRORS ==================================== 95s __________________ ERROR collecting cyvcf2/tests/test_cli.py ___________________ 95s ImportError while importing test module '/tmp/autopkgtest.UwqyeL/autopkgtest_tmp/cyvcf2/tests/test_cli.py'. 95s Hint: make sure your test modules/packages have valid Python names. 95s Traceback: 95s /usr/lib/python3/dist-packages/numpy/_core/__init__.py:23: in 95s from . import multiarray 95s /usr/lib/python3/dist-packages/numpy/_core/multiarray.py:10: in 95s from . import overrides 95s /usr/lib/python3/dist-packages/numpy/_core/overrides.py:7: in 95s from numpy._core._multiarray_umath import ( 95s E ModuleNotFoundError: No module named 'numpy._core._multiarray_umath' 95s 95s During handling of the above exception, another exception occurred: 95s /usr/lib/python3/dist-packages/numpy/__init__.py:114: in 95s from numpy.__config__ import show_config 95s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 95s from numpy._core._multiarray_umath import ( 95s /usr/lib/python3/dist-packages/numpy/_core/__init__.py:49: in 95s raise ImportError(msg) 95s E ImportError: 95s E 95s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 95s E 95s E Importing the numpy C-extensions failed. This error can happen for 95s E many reasons, often due to issues with your setup or how NumPy was 95s E installed. 95s E 95s E We have compiled some common reasons and troubleshooting tips at: 95s E 95s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 95s E 95s E Please note and check the following: 95s E 95s E * The Python version is: Python3.14 from "/usr/bin/python3.14" 95s E * The NumPy version is: "2.2.4" 95s E 95s E and make sure that they are the versions you expect. 95s E Please carefully study the documentation linked above for further help. 95s E 95s E Original error was: No module named 'numpy._core._multiarray_umath' 95s 95s The above exception was the direct cause of the following exception: 95s /usr/lib/python3.14/importlib/__init__.py:88: in import_module 95s return _bootstrap._gcd_import(name[level:], package, level) 95s cyvcf2/__init__.py:1: in 95s from .cyvcf2 import (VCF, Variant, Writer, r_ as r_unphased, par_relatedness, 95s cyvcf2/cyvcf2.pyx:1: in init cyvcf2.cyvcf2 95s #cython: profile=False 95s /usr/lib/python3/dist-packages/numpy/__init__.py:119: in 95s raise ImportError(msg) from e 95s E ImportError: Error importing numpy: you should not try to import numpy from 95s E its source directory; please exit the numpy source tree, and relaunch 95s E your python interpreter from there. 95s __________________ ERROR collecting cyvcf2/tests/test_hemi.py __________________ 95s ImportError while importing test module '/tmp/autopkgtest.UwqyeL/autopkgtest_tmp/cyvcf2/tests/test_hemi.py'. 95s Hint: make sure your test modules/packages have valid Python names. 95s Traceback: 95s /usr/lib/python3/dist-packages/numpy/_core/__init__.py:23: in 95s from . import multiarray 95s /usr/lib/python3/dist-packages/numpy/_core/multiarray.py:10: in 95s from . import overrides 95s /usr/lib/python3/dist-packages/numpy/_core/overrides.py:7: in 95s from numpy._core._multiarray_umath import ( 95s E ModuleNotFoundError: No module named 'numpy._core._multiarray_umath' 95s 95s During handling of the above exception, another exception occurred: 95s /usr/lib/python3/dist-packages/numpy/__init__.py:114: in 95s from numpy.__config__ import show_config 95s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 95s from numpy._core._multiarray_umath import ( 95s /usr/lib/python3/dist-packages/numpy/_core/__init__.py:49: in 95s raise ImportError(msg) 95s E ImportError: 95s E 95s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 95s E 95s E Importing the numpy C-extensions failed. This error can happen for 95s E many reasons, often due to issues with your setup or how NumPy was 95s E installed. 95s E 95s E We have compiled some common reasons and troubleshooting tips at: 95s E 95s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 95s E 95s E Please note and check the following: 95s E 95s E * The Python version is: Python3.14 from "/usr/bin/python3.14" 95s E * The NumPy version is: "2.2.4" 95s E 95s E and make sure that they are the versions you expect. 95s E Please carefully study the documentation linked above for further help. 95s E 95s E Original error was: No module named 'numpy._core._multiarray_umath' 95s 95s The above exception was the direct cause of the following exception: 95s /usr/lib/python3.14/importlib/__init__.py:88: in import_module 95s return _bootstrap._gcd_import(name[level:], package, level) 95s cyvcf2/__init__.py:1: in 95s from .cyvcf2 import (VCF, Variant, Writer, r_ as r_unphased, par_relatedness, 95s cyvcf2/cyvcf2.pyx:1: in init cyvcf2.cyvcf2 95s #cython: profile=False 95s /usr/lib/python3/dist-packages/numpy/__init__.py:119: in 95s raise ImportError(msg) from e 95s E ImportError: Error importing numpy: you should not try to import numpy from 95s E its source directory; please exit the numpy source tree, and relaunch 95s E your python interpreter from there. 95s _________________ ERROR collecting cyvcf2/tests/test_reader.py _________________ 95s ImportError while importing test module '/tmp/autopkgtest.UwqyeL/autopkgtest_tmp/cyvcf2/tests/test_reader.py'. 95s Hint: make sure your test modules/packages have valid Python names. 95s Traceback: 95s /usr/lib/python3/dist-packages/numpy/_core/__init__.py:23: in 95s from . import multiarray 95s /usr/lib/python3/dist-packages/numpy/_core/multiarray.py:10: in 95s from . import overrides 95s /usr/lib/python3/dist-packages/numpy/_core/overrides.py:7: in 95s from numpy._core._multiarray_umath import ( 95s E ModuleNotFoundError: No module named 'numpy._core._multiarray_umath' 95s 95s During handling of the above exception, another exception occurred: 95s /usr/lib/python3/dist-packages/numpy/__init__.py:114: in 95s from numpy.__config__ import show_config 95s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 95s from numpy._core._multiarray_umath import ( 95s /usr/lib/python3/dist-packages/numpy/_core/__init__.py:49: in 95s raise ImportError(msg) 95s E ImportError: 95s E 95s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 95s E 95s E Importing the numpy C-extensions failed. This error can happen for 95s E many reasons, often due to issues with your setup or how NumPy was 95s E installed. 95s E 95s E We have compiled some common reasons and troubleshooting tips at: 95s E 95s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 95s E 95s E Please note and check the following: 95s E 95s E * The Python version is: Python3.14 from "/usr/bin/python3.14" 95s E * The NumPy version is: "2.2.4" 95s E 95s E and make sure that they are the versions you expect. 95s E Please carefully study the documentation linked above for further help. 95s E 95s E Original error was: No module named 'numpy._core._multiarray_umath' 95s 95s The above exception was the direct cause of the following exception: 95s /usr/lib/python3.14/importlib/__init__.py:88: in import_module 95s return _bootstrap._gcd_import(name[level:], package, level) 95s cyvcf2/__init__.py:1: in 95s from .cyvcf2 import (VCF, Variant, Writer, r_ as r_unphased, par_relatedness, 95s cyvcf2/cyvcf2.pyx:1: in init cyvcf2.cyvcf2 95s #cython: profile=False 95s /usr/lib/python3/dist-packages/numpy/__init__.py:119: in 95s raise ImportError(msg) from e 95s E ImportError: Error importing numpy: you should not try to import numpy from 95s E its source directory; please exit the numpy source tree, and relaunch 95s E your python interpreter from there. 95s _________________ ERROR collecting cyvcf2/tests/test_writer.py _________________ 95s ImportError while importing test module '/tmp/autopkgtest.UwqyeL/autopkgtest_tmp/cyvcf2/tests/test_writer.py'. 95s Hint: make sure your test modules/packages have valid Python names. 95s Traceback: 95s /usr/lib/python3/dist-packages/numpy/_core/__init__.py:23: in 95s from . import multiarray 95s /usr/lib/python3/dist-packages/numpy/_core/multiarray.py:10: in 95s from . import overrides 95s /usr/lib/python3/dist-packages/numpy/_core/overrides.py:7: in 95s from numpy._core._multiarray_umath import ( 95s E ModuleNotFoundError: No module named 'numpy._core._multiarray_umath' 95s 95s During handling of the above exception, another exception occurred: 95s /usr/lib/python3/dist-packages/numpy/__init__.py:114: in 95s from numpy.__config__ import show_config 95s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 95s from numpy._core._multiarray_umath import ( 95s /usr/lib/python3/dist-packages/numpy/_core/__init__.py:49: in 95s raise ImportError(msg) 95s E ImportError: 95s E 95s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 95s E 95s E Importing the numpy C-extensions failed. This error can happen for 95s E many reasons, often due to issues with your setup or how NumPy was 95s E installed. 95s E 95s E We have compiled some common reasons and troubleshooting tips at: 95s E 95s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 95s E 95s E Please note and check the following: 95s E 95s E * The Python version is: Python3.14 from "/usr/bin/python3.14" 95s E * The NumPy version is: "2.2.4" 95s E 95s E and make sure that they are the versions you expect. 95s E Please carefully study the documentation linked above for further help. 95s E 95s E Original error was: No module named 'numpy._core._multiarray_umath' 95s 95s The above exception was the direct cause of the following exception: 95s /usr/lib/python3.14/importlib/__init__.py:88: in import_module 95s return _bootstrap._gcd_import(name[level:], package, level) 95s cyvcf2/__init__.py:1: in 95s from .cyvcf2 import (VCF, Variant, Writer, r_ as r_unphased, par_relatedness, 95s cyvcf2/cyvcf2.pyx:1: in init cyvcf2.cyvcf2 95s #cython: profile=False 95s /usr/lib/python3/dist-packages/numpy/__init__.py:119: in 95s raise ImportError(msg) from e 95s E ImportError: Error importing numpy: you should not try to import numpy from 95s E its source directory; please exit the numpy source tree, and relaunch 95s E your python interpreter from there. 95s =========================== short test summary info ============================ 95s ERROR cyvcf2/tests/test_cli.py 95s ERROR cyvcf2/tests/test_hemi.py 95s ERROR cyvcf2/tests/test_reader.py 95s ERROR cyvcf2/tests/test_writer.py 95s !!!!!!!!!!!!!!!!!!! Interrupted: 4 errors during collection !!!!!!!!!!!!!!!!!!!! 95s ============================== 4 errors in 0.21s =============================== 95s autopkgtest [13:36:21]: test run-unit-test: -----------------------] 96s run-unit-test FAIL non-zero exit status 2 96s autopkgtest [13:36:22]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 96s autopkgtest [13:36:22]: test autodep8-python3: preparing testbed 116s Creating nova instance adt-resolute-arm64-cyvcf2-20251117-133446-juju-7f2275-prod-proposed-migration-environment-20-c6ff9fdb-9c80-4b3b-a4f4-382e303ca76f from image adt/ubuntu-resolute-arm64-server-20251117.img (UUID 1cd33fbb-18df-4c5a-b8f0-2dcb25269485)... 203s autopkgtest [13:38:09]: testbed dpkg architecture: arm64 203s autopkgtest [13:38:09]: testbed apt version: 3.1.11 204s autopkgtest [13:38:10]: @@@@@@@@@@@@@@@@@@@@ test bed setup 204s autopkgtest [13:38:10]: testbed release detected to be: resolute 205s autopkgtest [13:38:11]: updating testbed package index (apt update) 205s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [87.8 kB] 206s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 206s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 206s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 206s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [22.9 kB] 206s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [868 kB] 206s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [81.1 kB] 206s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [9848 B] 206s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 Packages [149 kB] 206s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 c-n-f Metadata [3084 B] 206s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 Packages [107 kB] 206s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 c-n-f Metadata [324 B] 206s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 Packages [577 kB] 206s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 c-n-f Metadata [17.8 kB] 206s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 Packages [12.5 kB] 206s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 c-n-f Metadata [576 B] 208s Fetched 1938 kB in 1s (1553 kB/s) 210s Reading package lists... 211s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 211s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 211s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 211s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 212s Reading package lists... 213s Reading package lists... 213s Building dependency tree... 213s Reading state information... 213s Calculating upgrade... 214s The following packages will be upgraded: 214s libpython3-stdlib python3 python3-minimal usbutils 214s 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 214s Need to get 144 kB of archives. 214s After this operation, 0 B of additional disk space will be used. 214s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 python3-minimal arm64 3.13.7-2 [27.8 kB] 214s Get:2 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 python3 arm64 3.13.7-2 [23.9 kB] 214s Get:3 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 libpython3-stdlib arm64 3.13.7-2 [10.6 kB] 214s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 usbutils arm64 1:019-1 [81.7 kB] 215s dpkg-preconfigure: unable to re-open stdin: No such file or directory 215s Fetched 144 kB in 0s (339 kB/s) 215s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 88137 files and directories currently installed.) 215s Preparing to unpack .../python3-minimal_3.13.7-2_arm64.deb ... 215s Unpacking python3-minimal (3.13.7-2) over (3.13.7-1) ... 215s Setting up python3-minimal (3.13.7-2) ... 216s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 88137 files and directories currently installed.) 216s Preparing to unpack .../python3_3.13.7-2_arm64.deb ... 216s running python pre-rtupdate hooks for python3.13... 216s Unpacking python3 (3.13.7-2) over (3.13.7-1) ... 216s Preparing to unpack .../libpython3-stdlib_3.13.7-2_arm64.deb ... 216s Unpacking libpython3-stdlib:arm64 (3.13.7-2) over (3.13.7-1) ... 216s Preparing to unpack .../usbutils_1%3a019-1_arm64.deb ... 216s Unpacking usbutils (1:019-1) over (1:018-2) ... 216s Setting up usbutils (1:019-1) ... 216s Setting up libpython3-stdlib:arm64 (3.13.7-2) ... 217s Setting up python3 (3.13.7-2) ... 217s running python rtupdate hooks for python3.13... 217s running python post-rtupdate hooks for python3.13... 217s Processing triggers for man-db (2.13.1-1) ... 219s autopkgtest [13:38:25]: upgrading testbed (apt dist-upgrade and autopurge) 219s Reading package lists... 220s Building dependency tree... 220s Reading state information... 220s Calculating upgrade... 222s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 222s Reading package lists... 222s Building dependency tree... 222s Reading state information... 222s Solving dependencies... 222s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 225s Reading package lists... 226s Building dependency tree... 226s Reading state information... 226s Solving dependencies... 227s The following NEW packages will be installed: 227s libblas3 libdeflate0 libgfortran5 libhts3t64 libhtscodecs2 liblapack3 227s libpython3.14-minimal libpython3.14-stdlib python3-all python3-click 227s python3-coloredlogs python3-cyvcf2 python3-humanfriendly python3-numpy 227s python3-numpy-dev python3.14 python3.14-minimal 227s 0 upgraded, 17 newly installed, 0 to remove and 0 not upgraded. 227s Need to get 15.5 MB of archives. 227s After this operation, 64.5 MB of additional disk space will be used. 227s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-numpy-dev arm64 1:2.2.4+ds-1ubuntu1 [146 kB] 227s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 libblas3 arm64 3.12.1-7 [181 kB] 227s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 libgfortran5 arm64 15.2.0-7ubuntu1 [450 kB] 227s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 liblapack3 arm64 3.12.1-7 [2300 kB] 228s Get:5 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-numpy arm64 1:2.2.4+ds-1ubuntu1 [3986 kB] 228s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 libpython3.14-minimal arm64 3.14.0-4 [903 kB] 228s Get:7 http://ftpmaster.internal/ubuntu resolute/main arm64 python3.14-minimal arm64 3.14.0-4 [2543 kB] 228s Get:8 http://ftpmaster.internal/ubuntu resolute/main arm64 libdeflate0 arm64 1.23-2 [46.4 kB] 228s Get:9 http://ftpmaster.internal/ubuntu resolute/universe arm64 libhtscodecs2 arm64 1.6.1-2 [82.7 kB] 228s Get:10 http://ftpmaster.internal/ubuntu resolute/universe arm64 libhts3t64 arm64 1.22.1+ds2-1 [442 kB] 228s Get:11 http://ftpmaster.internal/ubuntu resolute/main arm64 libpython3.14-stdlib arm64 3.14.0-4 [2349 kB] 228s Get:12 http://ftpmaster.internal/ubuntu resolute/main arm64 python3.14 arm64 3.14.0-4 [805 kB] 228s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 python3-all arm64 3.13.7-2 [890 B] 228s Get:14 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-click all 8.2.0+0.really.8.1.8-1 [80.0 kB] 228s Get:15 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-humanfriendly all 10.0-6 [70.8 kB] 228s Get:16 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-coloredlogs all 15.0.1-1 [38.2 kB] 228s Get:17 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-cyvcf2 arm64 0.31.4-1 [1046 kB] 229s Fetched 15.5 MB in 1s (11.4 MB/s) 229s Selecting previously unselected package python3-numpy-dev:arm64. 229s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 88137 files and directories currently installed.) 229s Preparing to unpack .../00-python3-numpy-dev_1%3a2.2.4+ds-1ubuntu1_arm64.deb ... 229s Unpacking python3-numpy-dev:arm64 (1:2.2.4+ds-1ubuntu1) ... 229s Selecting previously unselected package libblas3:arm64. 229s Preparing to unpack .../01-libblas3_3.12.1-7_arm64.deb ... 229s Unpacking libblas3:arm64 (3.12.1-7) ... 229s Selecting previously unselected package libgfortran5:arm64. 229s Preparing to unpack .../02-libgfortran5_15.2.0-7ubuntu1_arm64.deb ... 229s Unpacking libgfortran5:arm64 (15.2.0-7ubuntu1) ... 229s Selecting previously unselected package liblapack3:arm64. 229s Preparing to unpack .../03-liblapack3_3.12.1-7_arm64.deb ... 229s Unpacking liblapack3:arm64 (3.12.1-7) ... 229s Selecting previously unselected package python3-numpy. 229s Preparing to unpack .../04-python3-numpy_1%3a2.2.4+ds-1ubuntu1_arm64.deb ... 229s Unpacking python3-numpy (1:2.2.4+ds-1ubuntu1) ... 229s Selecting previously unselected package libpython3.14-minimal:arm64. 229s Preparing to unpack .../05-libpython3.14-minimal_3.14.0-4_arm64.deb ... 229s Unpacking libpython3.14-minimal:arm64 (3.14.0-4) ... 229s Selecting previously unselected package python3.14-minimal. 229s Preparing to unpack .../06-python3.14-minimal_3.14.0-4_arm64.deb ... 229s Unpacking python3.14-minimal (3.14.0-4) ... 230s Selecting previously unselected package libdeflate0:arm64. 230s Preparing to unpack .../07-libdeflate0_1.23-2_arm64.deb ... 230s Unpacking libdeflate0:arm64 (1.23-2) ... 230s Selecting previously unselected package libhtscodecs2:arm64. 230s Preparing to unpack .../08-libhtscodecs2_1.6.1-2_arm64.deb ... 230s Unpacking libhtscodecs2:arm64 (1.6.1-2) ... 230s Selecting previously unselected package libhts3t64:arm64. 230s Preparing to unpack .../09-libhts3t64_1.22.1+ds2-1_arm64.deb ... 230s Unpacking libhts3t64:arm64 (1.22.1+ds2-1) ... 230s Selecting previously unselected package libpython3.14-stdlib:arm64. 230s Preparing to unpack .../10-libpython3.14-stdlib_3.14.0-4_arm64.deb ... 230s Unpacking libpython3.14-stdlib:arm64 (3.14.0-4) ... 230s Selecting previously unselected package python3.14. 230s Preparing to unpack .../11-python3.14_3.14.0-4_arm64.deb ... 230s Unpacking python3.14 (3.14.0-4) ... 230s Selecting previously unselected package python3-all. 230s Preparing to unpack .../12-python3-all_3.13.7-2_arm64.deb ... 230s Unpacking python3-all (3.13.7-2) ... 230s Selecting previously unselected package python3-click. 230s Preparing to unpack .../13-python3-click_8.2.0+0.really.8.1.8-1_all.deb ... 230s Unpacking python3-click (8.2.0+0.really.8.1.8-1) ... 230s Selecting previously unselected package python3-humanfriendly. 230s Preparing to unpack .../14-python3-humanfriendly_10.0-6_all.deb ... 230s Unpacking python3-humanfriendly (10.0-6) ... 230s Selecting previously unselected package python3-coloredlogs. 230s Preparing to unpack .../15-python3-coloredlogs_15.0.1-1_all.deb ... 230s Unpacking python3-coloredlogs (15.0.1-1) ... 230s Selecting previously unselected package python3-cyvcf2. 230s Preparing to unpack .../16-python3-cyvcf2_0.31.4-1_arm64.deb ... 230s Unpacking python3-cyvcf2 (0.31.4-1) ... 231s Setting up libhtscodecs2:arm64 (1.6.1-2) ... 231s Setting up libpython3.14-minimal:arm64 (3.14.0-4) ... 231s Setting up libdeflate0:arm64 (1.23-2) ... 231s Setting up python3-click (8.2.0+0.really.8.1.8-1) ... 231s Setting up libblas3:arm64 (3.12.1-7) ... 231s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 231s Setting up python3-humanfriendly (10.0-6) ... 232s /usr/lib/python3/dist-packages/humanfriendly/testing.py:546: SyntaxWarning: 'return' in a 'finally' block 232s return super(MockedProgram, self).__exit__(*args, **kw) 232s Setting up python3-numpy-dev:arm64 (1:2.2.4+ds-1ubuntu1) ... 232s Setting up libgfortran5:arm64 (15.2.0-7ubuntu1) ... 232s Setting up libhts3t64:arm64 (1.22.1+ds2-1) ... 232s Setting up python3-coloredlogs (15.0.1-1) ... 232s Setting up python3.14-minimal (3.14.0-4) ... 234s Setting up liblapack3:arm64 (3.12.1-7) ... 234s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 234s Setting up libpython3.14-stdlib:arm64 (3.14.0-4) ... 234s Setting up python3-numpy (1:2.2.4+ds-1ubuntu1) ... 241s Setting up python3.14 (3.14.0-4) ... 243s Setting up python3-all (3.13.7-2) ... 243s Setting up python3-cyvcf2 (0.31.4-1) ... 244s Processing triggers for systemd (257.9-0ubuntu2) ... 244s Processing triggers for man-db (2.13.1-1) ... 245s Processing triggers for libc-bin (2.42-2ubuntu2) ... 247s autopkgtest [13:38:53]: test autodep8-python3: set -e ; for py in $(py3versions -r 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -c "import cyvcf2; print(cyvcf2)" ; done 247s autopkgtest [13:38:53]: test autodep8-python3: [----------------------- 248s Testing with python3.14: 248s Traceback (most recent call last): 248s File "/usr/lib/python3/dist-packages/numpy/_core/__init__.py", line 23, in 248s from . import multiarray 248s File "/usr/lib/python3/dist-packages/numpy/_core/multiarray.py", line 10, in 248s from . import overrides 248s File "/usr/lib/python3/dist-packages/numpy/_core/overrides.py", line 7, in 248s from numpy._core._multiarray_umath import ( 248s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 248s ModuleNotFoundError: No module named 'numpy._core._multiarray_umath' 248s 248s During handling of the above exception, another exception occurred: 248s 248s Traceback (most recent call last): 248s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 114, in 248s from numpy.__config__ import show_config 248s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 248s from numpy._core._multiarray_umath import ( 248s ...<3 lines>... 248s ) 248s File "/usr/lib/python3/dist-packages/numpy/_core/__init__.py", line 49, in 248s raise ImportError(msg) 248s ImportError: 248s 248s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 248s 248s Importing the numpy C-extensions failed. This error can happen for 248s many reasons, often due to issues with your setup or how NumPy was 248s installed. 248s 248s We have compiled some common reasons and troubleshooting tips at: 248s 248s https://numpy.org/devdocs/user/troubleshooting-importerror.html 248s 248s Please note and check the following: 248s 248s * The Python version is: Python3.14 from "/usr/bin/python3.14" 248s * The NumPy version is: "2.2.4" 248s 248s and make sure that they are the versions you expect. 248s Please carefully study the documentation linked above for further help. 248s 248s Original error was: No module named 'numpy._core._multiarray_umath' 248s 248s 248s The above exception was the direct cause of the following exception: 248s 248s Traceback (most recent call last): 248s File "", line 1, in 248s import cyvcf2; print(cyvcf2) 248s ^^^^^^^^^^^^^ 248s File "/usr/lib/python3/dist-packages/cyvcf2/__init__.py", line 1, in 248s from .cyvcf2 import (VCF, Variant, Writer, r_ as r_unphased, par_relatedness, 248s par_het) 248s File "cyvcf2/cyvcf2.pyx", line 1, in init cyvcf2.cyvcf2 248s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 119, in 248s raise ImportError(msg) from e 248s ImportError: Error importing numpy: you should not try to import numpy from 248s its source directory; please exit the numpy source tree, and relaunch 248s your python interpreter from there. 249s autopkgtest [13:38:55]: test autodep8-python3: -----------------------] 249s autopkgtest [13:38:55]: test autodep8-python3: - - - - - - - - - - results - - - - - - - - - - 249s autodep8-python3 FAIL non-zero exit status 1 250s autopkgtest [13:38:56]: @@@@@@@@@@@@@@@@@@@@ summary 250s run-unit-test FAIL non-zero exit status 2 250s autodep8-python3 FAIL non-zero exit status 1