0s autopkgtest [21:33:24]: starting date and time: 2026-02-05 21:33:24+0000 0s autopkgtest [21:33:24]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [21:33:24]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.2avr2i2l/out --timeout-copy=6000 --needs-internet=try --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:matplotlib --apt-upgrade custodian --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=matplotlib/3.10.7+dfsg1-2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-arm64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@sto01-arm64-26.secgroup --name adt-resolute-arm64-custodian-20260205-213323-juju-7f2275-prod-proposed-migration-environment-20-1e1ad294-92eb-4b68-a838-c8a2aab420e2 --image adt/ubuntu-resolute-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-autopkgtest-workers-arm64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 9s Creating nova instance adt-resolute-arm64-custodian-20260205-213323-juju-7f2275-prod-proposed-migration-environment-20-1e1ad294-92eb-4b68-a838-c8a2aab420e2 from image adt/ubuntu-resolute-arm64-server-20260205.img (UUID 88169191-3954-4b52-b471-25031b32a3a0)... 80s autopkgtest [21:34:44]: testbed dpkg architecture: arm64 80s autopkgtest [21:34:44]: testbed apt version: 3.1.14 81s autopkgtest [21:34:45]: @@@@@@@@@@@@@@@@@@@@ test bed setup 82s autopkgtest [21:34:46]: testbed release detected to be: None 83s autopkgtest [21:34:47]: updating testbed package index (apt update) 84s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 84s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 84s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 84s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 84s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1689 kB] 84s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [223 kB] 85s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [32.2 kB] 85s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [5260 B] 85s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 Packages [272 kB] 85s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 c-n-f Metadata [7372 B] 85s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 Packages [52.9 kB] 85s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 c-n-f Metadata [328 B] 85s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 Packages [1451 kB] 85s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 c-n-f Metadata [41.6 kB] 85s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 Packages [23.7 kB] 85s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 c-n-f Metadata [800 B] 89s Fetched 3924 kB in 2s (2555 kB/s) 89s Reading package lists... 90s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 90s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 90s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 90s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 91s Reading package lists... 91s Reading package lists... 91s Building dependency tree... 91s Reading state information... 92s Calculating upgrade... 92s The following packages will be upgraded: 92s libdrm-amdgpu1 libdrm-common libdrm2 mawk 92s 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 92s Need to get 203 kB of archives. 92s After this operation, 0 B of additional disk space will be used. 92s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 mawk arm64 1.3.4.20260129-1 [128 kB] 92s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 libdrm-common all 2.4.131-1 [9774 B] 92s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 libdrm2 arm64 2.4.131-1 [42.6 kB] 92s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 libdrm-amdgpu1 arm64 2.4.131-1 [22.6 kB] 92s dpkg-preconfigure: unable to re-open stdin: No such file or directory 92s Fetched 203 kB in 0s (14.4 MB/s) 93s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 89360 files and directories currently installed.) 93s Preparing to unpack .../mawk_1.3.4.20260129-1_arm64.deb ... 93s Unpacking mawk (1.3.4.20260129-1) over (1.3.4.20250131-2) ... 93s Preparing to unpack .../libdrm-common_2.4.131-1_all.deb ... 93s Unpacking libdrm-common (2.4.131-1) over (2.4.129-1) ... 93s Preparing to unpack .../libdrm2_2.4.131-1_arm64.deb ... 93s Unpacking libdrm2:arm64 (2.4.131-1) over (2.4.129-1) ... 93s Preparing to unpack .../libdrm-amdgpu1_2.4.131-1_arm64.deb ... 93s Unpacking libdrm-amdgpu1:arm64 (2.4.131-1) over (2.4.129-1) ... 93s Setting up mawk (1.3.4.20260129-1) ... 93s Setting up libdrm-common (2.4.131-1) ... 93s Setting up libdrm2:arm64 (2.4.131-1) ... 93s Setting up libdrm-amdgpu1:arm64 (2.4.131-1) ... 93s Processing triggers for man-db (2.13.1-1) ... 94s Processing triggers for libc-bin (2.42-2ubuntu4) ... 94s autopkgtest [21:34:58]: upgrading testbed (apt dist-upgrade and autopurge) 94s Reading package lists... 94s Building dependency tree... 94s Reading state information... 94s Calculating upgrade... 95s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 95s Reading package lists... 95s Building dependency tree... 95s Reading state information... 95s Solving dependencies... 96s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 98s autopkgtest [21:35:02]: testbed running kernel: Linux 6.18.0-9-generic #9-Ubuntu SMP PREEMPT_DYNAMIC Mon Jan 12 16:41:39 UTC 2026 98s autopkgtest [21:35:02]: @@@@@@@@@@@@@@@@@@@@ apt-source custodian 119s Get:1 http://ftpmaster.internal/ubuntu resolute/universe custodian 2024.10.16-1 (dsc) [2442 B] 119s Get:2 http://ftpmaster.internal/ubuntu resolute/universe custodian 2024.10.16-1 (tar) [51.2 MB] 119s Get:3 http://ftpmaster.internal/ubuntu resolute/universe custodian 2024.10.16-1 (diff) [8360 B] 119s gpgv: Signature made Sat Feb 15 20:44:02 2025 UTC 119s gpgv: using RSA key 23C9A93E585819E9126D0A36573EF1E4BD5A01FA 119s gpgv: Can't check signature: No public key 119s dpkg-source: warning: cannot verify inline signature for ./custodian_2024.10.16-1.dsc: no acceptable signature found 121s autopkgtest [21:35:25]: testing package custodian version 2024.10.16-1 121s autopkgtest [21:35:25]: build not needed 142s autopkgtest [21:35:46]: test test-custodian: preparing testbed 142s Reading package lists... 143s Building dependency tree... 143s Reading state information... 143s Solving dependencies... 143s The following NEW packages will be installed: 143s fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lyx libblas3 143s libdeflate0 libfontconfig1 libgfortran5 libgomp1 libgraphite2-3 143s libharfbuzz0b libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 liblapack3 143s liblcms2-2 liblerc4 libopenjp2-7 libpython3.14-minimal libpython3.14-stdlib 143s libqhull-r8.0 libraqm0 libsharpyuv0 libsymspg2 libtcl8.6 libtiff6 libtk8.6 143s libwebp7 libwebpdemux2 libwebpmux3 libxft2 libxrender1 libxslt1.1 libxss1 143s libzopfli1 python-matplotlib-data python3-all python3-annotated-types 143s python3-brotli python3-bson python3-contourpy python3-custodian 143s python3-cycler python3-decorator python3-dnspython python3-email-validator 143s python3-fastjsonschema python3-fonttools python3-iniconfig python3-joblib 143s python3-jupyter-core python3-kiwisolver python3-latexcodec python3-lxml 143s python3-lz4 python3-matplotlib python3-monty python3-mpmath python3-nbformat 143s python3-networkx python3-numpy python3-numpy-dev python3-palettable 143s python3-pandas python3-pandas-lib python3-pil python3-pil.imagetk 143s python3-platformdirs python3-plotly python3-pluggy python3-psutil 143s python3-pybtex python3-pydantic python3-pydantic-core python3-pymatgen 143s python3-pytest python3-pytz python3-ruamel.yaml python3-ruamel.yaml.clib 143s python3-scipy python3-sentry-sdk python3-spglib python3-sympy 143s python3-tabulate python3-tenacity python3-tk python3-tqdm python3-traitlets 143s python3-typing-inspection python3-ufolib2 python3-uncertainties 143s python3-zopfli python3.13-tk python3.14 python3.14-minimal python3.14-tk 143s unicode-data x11-common 143s 0 upgraded, 99 newly installed, 0 to remove and 0 not upgraded. 143s Need to get 109 MB of archives. 143s After this operation, 596 MB of additional disk space will be used. 143s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-numpy-dev arm64 1:2.3.5+ds-3 [366 kB] 143s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 libblas3 arm64 3.12.1-7ubuntu1 [181 kB] 143s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 libgfortran5 arm64 15.2.0-12ubuntu1 [451 kB] 143s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 liblapack3 arm64 3.12.1-7ubuntu1 [2299 kB] 144s Get:5 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-numpy arm64 1:2.3.5+ds-3 [4569 kB] 144s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 libpython3.14-minimal arm64 3.14.2-1 [917 kB] 144s Get:7 http://ftpmaster.internal/ubuntu resolute/main arm64 python3.14-minimal arm64 3.14.2-1 [2548 kB] 145s Get:8 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-mono all 2.37-8build1 [502 kB] 145s Get:9 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-core all 2.37-8build1 [834 kB] 145s Get:10 http://ftpmaster.internal/ubuntu resolute/main arm64 fontconfig-config arm64 2.17.1-3ubuntu1 [38.5 kB] 145s Get:11 http://ftpmaster.internal/ubuntu resolute/universe arm64 fonts-lyx all 2.5.0~RC2-3 [171 kB] 145s Get:12 http://ftpmaster.internal/ubuntu resolute/main arm64 libdeflate0 arm64 1.23-2 [46.4 kB] 145s Get:13 http://ftpmaster.internal/ubuntu resolute/main arm64 libfontconfig1 arm64 2.17.1-3ubuntu1 [144 kB] 145s Get:14 http://ftpmaster.internal/ubuntu resolute/main arm64 libgomp1 arm64 15.2.0-12ubuntu1 [147 kB] 145s Get:15 http://ftpmaster.internal/ubuntu resolute/main arm64 libgraphite2-3 arm64 1.3.14-11ubuntu1 [72.1 kB] 145s Get:16 http://ftpmaster.internal/ubuntu resolute/main arm64 libharfbuzz0b arm64 12.3.2-1 [510 kB] 145s Get:17 http://ftpmaster.internal/ubuntu resolute/main arm64 libimagequant0 arm64 2.18.0-1build1 [37.1 kB] 145s Get:18 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg-turbo8 arm64 2.1.5-4ubuntu2 [165 kB] 145s Get:19 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 145s Get:20 http://ftpmaster.internal/ubuntu resolute/main arm64 liblcms2-2 arm64 2.17-1 [170 kB] 145s Get:21 http://ftpmaster.internal/ubuntu resolute/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu2 [174 kB] 145s Get:22 http://ftpmaster.internal/ubuntu resolute/main arm64 libpython3.14-stdlib arm64 3.14.2-1 [2351 kB] 145s Get:23 http://ftpmaster.internal/ubuntu resolute/universe arm64 libqhull-r8.0 arm64 2020.2-8 [191 kB] 145s Get:24 http://ftpmaster.internal/ubuntu resolute/main arm64 libraqm0 arm64 0.10.3-1 [15.0 kB] 145s Get:25 http://ftpmaster.internal/ubuntu resolute/main arm64 libsharpyuv0 arm64 1.5.0-0.1build1 [16.7 kB] 145s Get:26 http://ftpmaster.internal/ubuntu resolute/universe arm64 libsymspg2 arm64 2.7.0-1 [208 kB] 145s Get:27 http://ftpmaster.internal/ubuntu resolute/main arm64 libtcl8.6 arm64 8.6.17+dfsg-1build1 [983 kB] 145s Get:28 http://ftpmaster.internal/ubuntu resolute/main arm64 libjbig0 arm64 2.1-6.1ubuntu3 [29.2 kB] 145s Get:29 http://ftpmaster.internal/ubuntu resolute/main arm64 libwebp7 arm64 1.5.0-0.1build1 [205 kB] 145s Get:30 http://ftpmaster.internal/ubuntu resolute/main arm64 libtiff6 arm64 4.7.0-3ubuntu3 [196 kB] 145s Get:31 http://ftpmaster.internal/ubuntu resolute/main arm64 libxrender1 arm64 1:0.9.12-1 [19.5 kB] 145s Get:32 http://ftpmaster.internal/ubuntu resolute/main arm64 libxft2 arm64 2.3.6-1build2 [43.2 kB] 145s Get:33 http://ftpmaster.internal/ubuntu resolute/main arm64 x11-common all 1:7.7+24ubuntu1 [22.4 kB] 145s Get:34 http://ftpmaster.internal/ubuntu resolute/main arm64 libxss1 arm64 1:1.2.3-1build4 [7102 B] 145s Get:35 http://ftpmaster.internal/ubuntu resolute/main arm64 libtk8.6 arm64 8.6.17-1 [811 kB] 145s Get:36 http://ftpmaster.internal/ubuntu resolute/main arm64 libwebpdemux2 arm64 1.5.0-0.1build1 [12.5 kB] 145s Get:37 http://ftpmaster.internal/ubuntu resolute/main arm64 libwebpmux3 arm64 1.5.0-0.1build1 [25.2 kB] 145s Get:38 http://ftpmaster.internal/ubuntu resolute/main arm64 libxslt1.1 arm64 1.1.43-0.3 [172 kB] 145s Get:39 http://ftpmaster.internal/ubuntu resolute/universe arm64 libzopfli1 arm64 1.0.3-3build1 [106 kB] 145s Get:40 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 python-matplotlib-data all 3.10.7+dfsg1-2 [2930 kB] 145s Get:41 http://ftpmaster.internal/ubuntu resolute/main arm64 python3.14 arm64 3.14.2-1 [816 kB] 146s Get:42 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-all arm64 3.13.9-3 [890 B] 146s Get:43 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-annotated-types all 0.7.0-1 [19.4 kB] 146s Get:44 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-brotli arm64 1.1.0-2build6 [343 kB] 146s Get:45 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-bson all 4.16.0-1 [44.8 kB] 146s Get:46 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-contourpy arm64 1.3.3-1 [245 kB] 146s Get:47 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pytz all 2025.2-5 [32.4 kB] 146s Get:48 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pandas-lib arm64 2.3.3+dfsg-3 [6290 kB] 146s Get:49 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pandas all 2.3.3+dfsg-3 [2948 kB] 146s Get:50 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pydantic-core arm64 2.41.5-2 [2170 kB] 147s Get:51 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-typing-inspection all 0.4.2-1 [13.1 kB] 147s Get:52 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-dnspython all 2.7.0-1ubuntu2 [167 kB] 147s Get:53 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-email-validator all 2.2.0-1 [28.5 kB] 147s Get:54 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pydantic arm64 2.12.5-2 [312 kB] 147s Get:55 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-tqdm all 4.67.1-7 [93.3 kB] 147s Get:56 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-ruamel.yaml.clib arm64 0.2.15+ds-1 [178 kB] 147s Get:57 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-ruamel.yaml all 0.18.10+ds-1 [127 kB] 147s Get:58 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-monty all 2025.3.3-1 [40.4 kB] 147s Get:59 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-psutil arm64 7.1.0-1ubuntu1 [191 kB] 147s Get:60 http://ftpmaster.internal/ubuntu resolute/main arm64 libopenjp2-7 arm64 2.5.4-1 [180 kB] 147s Get:61 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-pil arm64 12.0.0-1ubuntu1 [486 kB] 147s Get:62 http://ftpmaster.internal/ubuntu resolute/main arm64 python3.13-tk arm64 3.13.11-1 [106 kB] 147s Get:63 http://ftpmaster.internal/ubuntu resolute/main arm64 python3.14-tk arm64 3.14.2-1 [108 kB] 147s Get:64 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-tk arm64 3.13.9-3 [11.2 kB] 147s Get:65 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pil.imagetk arm64 12.0.0-1ubuntu1 [9532 B] 147s Get:66 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-cycler all 0.12.1-2 [9850 B] 147s Get:67 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-lxml arm64 6.0.2-1 [2155 kB] 147s Get:68 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-lz4 arm64 4.4.5+dfsg-1 [27.9 kB] 147s Get:69 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-decorator all 5.2.1-2 [28.1 kB] 147s Get:70 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-scipy arm64 1.16.3-4 [17.5 MB] 148s Get:71 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-mpmath all 1.3.0-2 [423 kB] 148s Get:72 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-sympy all 1.14.0-2 [4306 kB] 149s Get:73 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-ufolib2 all 0.18.1+dfsg1-1 [33.7 kB] 149s Get:74 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-zopfli arm64 0.4.0-1 [10.8 kB] 149s Get:75 http://ftpmaster.internal/ubuntu resolute/universe arm64 unicode-data all 16.0.0-1build1 [9543 kB] 150s Get:76 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-fonttools arm64 4.61.1-3 [1680 kB] 150s Get:77 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-kiwisolver arm64 1.4.10~rc0-1 [60.1 kB] 150s Get:78 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 python3-matplotlib arm64 3.10.7+dfsg1-2 [17.2 MB] 151s Get:79 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-sentry-sdk all 2.22.0-1 [199 kB] 151s Get:80 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-custodian all 2024.10.16-1 [90.9 kB] 151s Get:81 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-fastjsonschema all 2.21.1-1 [20.4 kB] 151s Get:82 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-iniconfig all 2.1.0-2 [6962 B] 151s Get:83 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-joblib all 1.5.2-1 [210 kB] 151s Get:84 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-platformdirs all 4.5.1-1 [17.1 kB] 151s Get:85 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-traitlets all 5.14.3+really5.14.3-2 [71.7 kB] 151s Get:86 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-jupyter-core all 5.9.1-1 [28.9 kB] 151s Get:87 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-latexcodec all 3.0.0-1 [16.6 kB] 151s Get:88 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-nbformat all 5.10.4-1 [39.2 kB] 151s Get:89 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-networkx all 3.2.1-4ubuntu2 [11.8 MB] 152s Get:90 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-palettable all 3.3.3-3 [72.6 kB] 152s Get:91 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-tenacity all 9.0.0-0ubuntu1 [17.0 kB] 152s Get:92 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-plotly all 5.20.0+dfsg-1.1 [2766 kB] 152s Get:93 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pluggy all 1.6.0-2 [21.1 kB] 152s Get:94 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pybtex all 0.25.1-1 [70.0 kB] 152s Get:95 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-spglib arm64 2.7.0-1 [176 kB] 152s Get:96 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-tabulate all 0.9.0-1build1 [45.4 kB] 152s Get:97 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-uncertainties all 3.2.3-4 [51.8 kB] 152s Get:98 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pymatgen arm64 2025.2.18+dfsg1-5 [2607 kB] 153s Get:99 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pytest all 9.0.2-2 [277 kB] 153s Fetched 109 MB in 9s (11.7 MB/s) 153s Selecting previously unselected package python3-numpy-dev:arm64. 153s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 89360 files and directories currently installed.) 153s Preparing to unpack .../00-python3-numpy-dev_1%3a2.3.5+ds-3_arm64.deb ... 153s Unpacking python3-numpy-dev:arm64 (1:2.3.5+ds-3) ... 153s Selecting previously unselected package libblas3:arm64. 153s Preparing to unpack .../01-libblas3_3.12.1-7ubuntu1_arm64.deb ... 153s Unpacking libblas3:arm64 (3.12.1-7ubuntu1) ... 153s Selecting previously unselected package libgfortran5:arm64. 153s Preparing to unpack .../02-libgfortran5_15.2.0-12ubuntu1_arm64.deb ... 153s Unpacking libgfortran5:arm64 (15.2.0-12ubuntu1) ... 153s Selecting previously unselected package liblapack3:arm64. 153s Preparing to unpack .../03-liblapack3_3.12.1-7ubuntu1_arm64.deb ... 153s Unpacking liblapack3:arm64 (3.12.1-7ubuntu1) ... 153s Selecting previously unselected package python3-numpy. 153s Preparing to unpack .../04-python3-numpy_1%3a2.3.5+ds-3_arm64.deb ... 153s Unpacking python3-numpy (1:2.3.5+ds-3) ... 154s Selecting previously unselected package libpython3.14-minimal:arm64. 154s Preparing to unpack .../05-libpython3.14-minimal_3.14.2-1_arm64.deb ... 154s Unpacking libpython3.14-minimal:arm64 (3.14.2-1) ... 154s Selecting previously unselected package python3.14-minimal. 154s Preparing to unpack .../06-python3.14-minimal_3.14.2-1_arm64.deb ... 154s Unpacking python3.14-minimal (3.14.2-1) ... 154s Selecting previously unselected package fonts-dejavu-mono. 154s Preparing to unpack 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libfontconfig1:arm64 (2.17.1-3ubuntu1) ... 154s Selecting previously unselected package libgomp1:arm64. 154s Preparing to unpack .../13-libgomp1_15.2.0-12ubuntu1_arm64.deb ... 154s Unpacking libgomp1:arm64 (15.2.0-12ubuntu1) ... 154s Selecting previously unselected package libgraphite2-3:arm64. 154s Preparing to unpack .../14-libgraphite2-3_1.3.14-11ubuntu1_arm64.deb ... 154s Unpacking libgraphite2-3:arm64 (1.3.14-11ubuntu1) ... 154s Selecting previously unselected package libharfbuzz0b:arm64. 154s Preparing to unpack .../15-libharfbuzz0b_12.3.2-1_arm64.deb ... 154s Unpacking libharfbuzz0b:arm64 (12.3.2-1) ... 154s Selecting previously unselected package libimagequant0:arm64. 154s Preparing to unpack .../16-libimagequant0_2.18.0-1build1_arm64.deb ... 154s Unpacking libimagequant0:arm64 (2.18.0-1build1) ... 154s Selecting previously unselected package libjpeg-turbo8:arm64. 154s Preparing to unpack .../17-libjpeg-turbo8_2.1.5-4ubuntu2_arm64.deb ... 154s Unpacking libjpeg-turbo8:arm64 (2.1.5-4ubuntu2) ... 154s Selecting previously unselected package libjpeg8:arm64. 154s Preparing to unpack .../18-libjpeg8_8c-2ubuntu11_arm64.deb ... 154s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 154s Selecting previously unselected package liblcms2-2:arm64. 154s Preparing to unpack .../19-liblcms2-2_2.17-1_arm64.deb ... 154s Unpacking liblcms2-2:arm64 (2.17-1) ... 155s Selecting previously unselected package liblerc4:arm64. 155s Preparing to unpack .../20-liblerc4_4.0.0+ds-5ubuntu2_arm64.deb ... 155s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu2) ... 155s Selecting previously unselected package libpython3.14-stdlib:arm64. 155s Preparing to unpack .../21-libpython3.14-stdlib_3.14.2-1_arm64.deb ... 155s Unpacking libpython3.14-stdlib:arm64 (3.14.2-1) ... 155s Selecting previously unselected package libqhull-r8.0:arm64. 155s Preparing to unpack .../22-libqhull-r8.0_2020.2-8_arm64.deb ... 155s Unpacking libqhull-r8.0:arm64 (2020.2-8) ... 155s Selecting previously unselected package libraqm0:arm64. 155s Preparing to unpack .../23-libraqm0_0.10.3-1_arm64.deb ... 155s Unpacking libraqm0:arm64 (0.10.3-1) ... 155s Selecting previously unselected package libsharpyuv0:arm64. 155s Preparing to unpack .../24-libsharpyuv0_1.5.0-0.1build1_arm64.deb ... 155s Unpacking libsharpyuv0:arm64 (1.5.0-0.1build1) ... 155s Selecting previously unselected package libsymspg2:arm64. 155s Preparing to unpack .../25-libsymspg2_2.7.0-1_arm64.deb ... 155s Unpacking libsymspg2:arm64 (2.7.0-1) ... 155s Selecting previously unselected package libtcl8.6:arm64. 155s Preparing to unpack .../26-libtcl8.6_8.6.17+dfsg-1build1_arm64.deb ... 155s Unpacking libtcl8.6:arm64 (8.6.17+dfsg-1build1) ... 155s Selecting previously unselected package libjbig0:arm64. 155s Preparing to unpack .../27-libjbig0_2.1-6.1ubuntu3_arm64.deb ... 155s Unpacking libjbig0:arm64 (2.1-6.1ubuntu3) ... 155s Selecting previously unselected package libwebp7:arm64. 155s Preparing to unpack .../28-libwebp7_1.5.0-0.1build1_arm64.deb 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package libtk8.6:arm64. 155s Preparing to unpack .../34-libtk8.6_8.6.17-1_arm64.deb ... 155s Unpacking libtk8.6:arm64 (8.6.17-1) ... 155s Selecting previously unselected package libwebpdemux2:arm64. 155s Preparing to unpack .../35-libwebpdemux2_1.5.0-0.1build1_arm64.deb ... 155s Unpacking libwebpdemux2:arm64 (1.5.0-0.1build1) ... 155s Selecting previously unselected package libwebpmux3:arm64. 155s Preparing to unpack .../36-libwebpmux3_1.5.0-0.1build1_arm64.deb ... 155s Unpacking libwebpmux3:arm64 (1.5.0-0.1build1) ... 155s Selecting previously unselected package libxslt1.1:arm64. 155s Preparing to unpack .../37-libxslt1.1_1.1.43-0.3_arm64.deb ... 155s Unpacking libxslt1.1:arm64 (1.1.43-0.3) ... 155s Selecting previously unselected package libzopfli1. 155s Preparing to unpack .../38-libzopfli1_1.0.3-3build1_arm64.deb ... 155s Unpacking libzopfli1 (1.0.3-3build1) ... 155s Selecting previously unselected package python-matplotlib-data. 155s Preparing to unpack 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156s Selecting previously unselected package python3-contourpy. 156s Preparing to unpack .../45-python3-contourpy_1.3.3-1_arm64.deb ... 156s Unpacking python3-contourpy (1.3.3-1) ... 156s Selecting previously unselected package python3-pytz. 156s Preparing to unpack .../46-python3-pytz_2025.2-5_all.deb ... 156s Unpacking python3-pytz (2025.2-5) ... 156s Selecting previously unselected package python3-pandas-lib:arm64. 156s Preparing to unpack .../47-python3-pandas-lib_2.3.3+dfsg-3_arm64.deb ... 156s Unpacking python3-pandas-lib:arm64 (2.3.3+dfsg-3) ... 156s Selecting previously unselected package python3-pandas. 156s Preparing to unpack .../48-python3-pandas_2.3.3+dfsg-3_all.deb ... 156s Unpacking python3-pandas (2.3.3+dfsg-3) ... 156s Selecting previously unselected package python3-pydantic-core. 156s Preparing to unpack .../49-python3-pydantic-core_2.41.5-2_arm64.deb ... 156s Unpacking python3-pydantic-core (2.41.5-2) ... 156s Selecting previously unselected package 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python3-lxml:arm64. 157s Preparing to unpack .../66-python3-lxml_6.0.2-1_arm64.deb ... 157s Unpacking python3-lxml:arm64 (6.0.2-1) ... 157s Selecting previously unselected package python3-lz4. 157s Preparing to unpack .../67-python3-lz4_4.4.5+dfsg-1_arm64.deb ... 157s Unpacking python3-lz4 (4.4.5+dfsg-1) ... 157s Selecting previously unselected package python3-decorator. 157s Preparing to unpack .../68-python3-decorator_5.2.1-2_all.deb ... 157s Unpacking python3-decorator (5.2.1-2) ... 157s Selecting previously unselected package python3-scipy. 157s Preparing to unpack .../69-python3-scipy_1.16.3-4_arm64.deb ... 157s Unpacking python3-scipy (1.16.3-4) ... 158s Selecting previously unselected package python3-mpmath. 158s Preparing to unpack .../70-python3-mpmath_1.3.0-2_all.deb ... 158s Unpacking python3-mpmath (1.3.0-2) ... 158s Selecting previously unselected package python3-sympy. 158s Preparing to unpack .../71-python3-sympy_1.14.0-2_all.deb ... 158s Unpacking python3-sympy 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Setting up python3-brotli (1.1.0-2build6) ... 169s Setting up python3-cycler (0.12.1-2) ... 169s Setting up libimagequant0:arm64 (2.18.0-1build1) ... 169s Setting up python3-sentry-sdk (2.22.0-1) ... 170s Setting up fonts-dejavu-mono (2.37-8build1) ... 170s Setting up python3-kiwisolver (1.4.10~rc0-1) ... 170s Setting up python3-numpy-dev:arm64 (1:2.3.5+ds-3) ... 170s Setting up libtcl8.6:arm64 (8.6.17+dfsg-1build1) ... 170s Setting up fonts-dejavu-core (2.37-8build1) ... 170s Setting up libjpeg-turbo8:arm64 (2.1.5-4ubuntu2) ... 170s Setting up libgfortran5:arm64 (15.2.0-12ubuntu1) ... 170s Setting up python3-pluggy (1.6.0-2) ... 170s Setting up libwebp7:arm64 (1.5.0-0.1build1) ... 170s Setting up python3-pybtex (0.25.1-1) ... 171s Setting up python3-fastjsonschema (2.21.1-1) ... 171s Setting up python3-ruamel.yaml (0.18.10+ds-1) ... 171s Setting up python3-dnspython (2.7.0-1ubuntu2) ... 172s Setting up python3-traitlets (5.14.3+really5.14.3-2) ... 172s Setting up libxslt1.1:arm64 (1.1.43-0.3) ... 172s Setting up libopenjp2-7:arm64 (2.5.4-1) ... 172s Setting up libharfbuzz0b:arm64 (12.3.2-1) ... 172s Setting up python3-email-validator (2.2.0-1) ... 172s Setting up libxss1:arm64 (1:1.2.3-1build4) ... 172s Setting up python3-mpmath (1.3.0-2) ... 173s Setting up python-matplotlib-data (3.10.7+dfsg1-2) ... 173s Setting up libwebpmux3:arm64 (1.5.0-0.1build1) ... 173s Setting up python3.14-minimal (3.14.2-1) ... 174s Setting up python3-jupyter-core (5.9.1-1) ... 174s Setting up python3-uncertainties (3.2.3-4) ... 175s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 175s Setting up python3-sympy (1.14.0-2) ... 187s /usr/lib/python3/dist-packages/sympy/testing/runtests.py:283: SyntaxWarning: 'return' in a 'finally' block 187s return p.returncode 187s Setting up liblapack3:arm64 (3.12.1-7ubuntu1) ... 187s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 187s Setting up libpython3.14-stdlib:arm64 (3.14.2-1) ... 187s Setting up fontconfig-config (2.17.1-3ubuntu1) ... 187s Setting up python3-pytest (9.0.2-2) ... 188s Setting up libwebpdemux2:arm64 (1.5.0-0.1build1) ... 188s Setting up python3-nbformat (5.10.4-1) ... 188s Setting up python3-zopfli (0.4.0-1) ... 188s Setting up python3-pydantic (2.12.5-2) ... 189s Setting up libraqm0:arm64 (0.10.3-1) ... 189s Setting up python3-plotly (5.20.0+dfsg-1.1) ... 200s Setting up python3-numpy (1:2.3.5+ds-3) ... 204s Setting up python3-lxml:arm64 (6.0.2-1) ... 204s Setting up libtiff6:arm64 (4.7.0-3ubuntu3) ... 204s Setting up python3-contourpy (1.3.3-1) ... 204s Setting up libfontconfig1:arm64 (2.17.1-3ubuntu1) ... 204s Setting up python3.14 (3.14.2-1) ... 205s Setting up python3-spglib (2.7.0-1) ... 206s Setting up libxft2:arm64 (2.3.6-1build2) ... 206s Setting up python3-scipy (1.16.3-4) ... 213s Setting up libtk8.6:arm64 (8.6.17-1) ... 213s Setting up python3-pandas-lib:arm64 (2.3.3+dfsg-3) ... 213s Setting up python3-all (3.13.9-3) ... 213s Setting up python3.13-tk (3.13.11-1) ... 213s Setting up python3-pil:arm64 (12.0.0-1ubuntu1) ... 214s Setting up python3-pandas (2.3.3+dfsg-3) ... 223s Setting up python3-monty (2025.3.3-1) ... 223s Setting up python3.14-tk (3.14.2-1) ... 224s Setting up python3-tk (3.13.9-3) ... 224s Setting up python3-pil.imagetk:arm64 (12.0.0-1ubuntu1) ... 224s Setting up python3-fonttools (4.61.1-3) ... 226s Setting up python3-ufolib2 (0.18.1+dfsg1-1) ... 226s Setting up python3-matplotlib (3.10.7+dfsg1-2) ... 229s Setting up python3-pymatgen (2025.2.18+dfsg1-5) ... 232s Setting up python3-custodian (2024.10.16-1) ... 232s Processing triggers for libc-bin (2.42-2ubuntu4) ... 232s Processing triggers for systemd (259-1ubuntu3) ... 232s Processing triggers for man-db (2.13.1-1) ... 233s autopkgtest [21:37:17]: test test-custodian: [----------------------- 234s ============================= test session starts ============================== 234s platform linux -- Python 3.14.2, pytest-9.0.2, pluggy-1.6.0 -- /usr/bin/python3.14 234s cachedir: .pytest_cache 234s rootdir: /tmp/autopkgtest.D89UhA/autopkgtest_tmp/runtests 234s plugins: typeguard-4.4.4 237s collecting ... collected 18 items / 13 errors / 3 skipped 237s 237s ==================================== ERRORS ==================================== 237s _________________ ERROR collecting tests/cp2k/test_handlers.py _________________ 237s ImportError while importing test module '/tmp/autopkgtest.D89UhA/autopkgtest_tmp/runtests/tests/cp2k/test_handlers.py'. 237s Hint: make sure your test modules/packages have valid Python names. 237s Traceback: 237s /usr/lib/python3.14/importlib/__init__.py:88: in import_module 237s return _bootstrap._gcd_import(name[level:], package, level) 237s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 237s tests/cp2k/test_handlers.py:11: in 237s from pymatgen.io.cp2k.inputs import Keyword, KeywordList 237s /usr/lib/python3/dist-packages/pymatgen/io/cp2k/inputs.py:39: in 237s from pymatgen.core import Element 237s /usr/lib/python3/dist-packages/pymatgen/core/__init__.py:13: in 237s from pymatgen.core.lattice import Lattice 237s /usr/lib/python3/dist-packages/pymatgen/core/lattice.py:21: in 237s from pymatgen.util.coord import pbc_shortest_vectors 237s /usr/lib/python3/dist-packages/pymatgen/util/coord.py:15: in 237s from pymatgen.util import coord_cython 237s E ImportError: cannot import name 'coord_cython' from 'pymatgen.util' (/usr/lib/python3/dist-packages/pymatgen/util/__init__.py) 237s ___________________ ERROR collecting tests/cp2k/test_jobs.py ___________________ 237s ImportError while importing test module '/tmp/autopkgtest.D89UhA/autopkgtest_tmp/runtests/tests/cp2k/test_jobs.py'. 237s Hint: make sure your test modules/packages have valid Python names. 237s Traceback: 237s /usr/lib/python3.14/importlib/__init__.py:88: in import_module 237s return _bootstrap._gcd_import(name[level:], package, level) 237s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 237s tests/cp2k/test_jobs.py:10: in 237s from custodian.cp2k.jobs import Cp2kJob 237s /usr/lib/python3/dist-packages/custodian/cp2k/jobs.py:10: in 237s from pymatgen.io.cp2k.inputs import Cp2kInput, Keyword 237s /usr/lib/python3/dist-packages/pymatgen/io/cp2k/inputs.py:39: in 237s from pymatgen.core import Element 237s /usr/lib/python3/dist-packages/pymatgen/core/__init__.py:13: in 237s from pymatgen.core.lattice import Lattice 237s /usr/lib/python3/dist-packages/pymatgen/core/lattice.py:21: in 237s from pymatgen.util.coord import pbc_shortest_vectors 237s /usr/lib/python3/dist-packages/pymatgen/util/coord.py:15: in 237s from pymatgen.util import coord_cython 237s E ImportError: cannot import name 'coord_cython' from 'pymatgen.util' (/usr/lib/python3/dist-packages/pymatgen/util/__init__.py) 237s _________________ ERROR collecting tests/feff/test_handlers.py _________________ 237s ImportError while importing test module '/tmp/autopkgtest.D89UhA/autopkgtest_tmp/runtests/tests/feff/test_handlers.py'. 237s Hint: make sure your test modules/packages have valid Python names. 237s Traceback: 237s /usr/lib/python3.14/importlib/__init__.py:88: in import_module 237s return _bootstrap._gcd_import(name[level:], package, level) 237s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 237s tests/feff/test_handlers.py:6: in 237s from custodian.feff.handlers import UnconvergedErrorHandler 237s /usr/lib/python3/dist-packages/custodian/feff/handlers.py:9: in 237s from pymatgen.io.feff.sets import FEFFDictSet 237s /usr/lib/python3/dist-packages/pymatgen/io/feff/__init__.py:9: in 237s from .inputs import ( 237s /usr/lib/python3/dist-packages/pymatgen/io/feff/inputs.py:20: in 237s from pymatgen.core import Element, Lattice, Molecule, Structure 237s /usr/lib/python3/dist-packages/pymatgen/core/__init__.py:13: in 237s from pymatgen.core.lattice import Lattice 237s /usr/lib/python3/dist-packages/pymatgen/core/lattice.py:21: in 237s from pymatgen.util.coord import pbc_shortest_vectors 237s /usr/lib/python3/dist-packages/pymatgen/util/coord.py:15: in 237s from pymatgen.util import coord_cython 237s E ImportError: cannot import name 'coord_cython' from 'pymatgen.util' (/usr/lib/python3/dist-packages/pymatgen/util/__init__.py) 237s ___________________ ERROR collecting tests/feff/test_jobs.py ___________________ 237s ImportError while importing test module '/tmp/autopkgtest.D89UhA/autopkgtest_tmp/runtests/tests/feff/test_jobs.py'. 237s Hint: make sure your test modules/packages have valid Python names. 237s Traceback: 237s /usr/lib/python3.14/importlib/__init__.py:88: in import_module 237s return _bootstrap._gcd_import(name[level:], package, level) 237s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 237s tests/feff/test_jobs.py:5: in 237s from pymatgen.io.feff.inputs import Atoms, Tags 237s /usr/lib/python3/dist-packages/pymatgen/io/feff/__init__.py:9: in 237s from .inputs import ( 237s /usr/lib/python3/dist-packages/pymatgen/io/feff/inputs.py:20: in 237s from pymatgen.core import Element, Lattice, Molecule, Structure 237s /usr/lib/python3/dist-packages/pymatgen/core/__init__.py:13: in 237s from pymatgen.core.lattice import Lattice 237s /usr/lib/python3/dist-packages/pymatgen/core/lattice.py:21: in 237s from pymatgen.util.coord import pbc_shortest_vectors 237s /usr/lib/python3/dist-packages/pymatgen/util/coord.py:15: in 237s from pymatgen.util import coord_cython 237s E ImportError: cannot import name 'coord_cython' from 'pymatgen.util' (/usr/lib/python3/dist-packages/pymatgen/util/__init__.py) 237s _______________ ERROR collecting tests/gaussian/test_handlers.py _______________ 237s ImportError while importing test module '/tmp/autopkgtest.D89UhA/autopkgtest_tmp/runtests/tests/gaussian/test_handlers.py'. 237s Hint: make sure your test modules/packages have valid Python names. 237s Traceback: 237s /usr/lib/python3.14/importlib/__init__.py:88: in import_module 237s return _bootstrap._gcd_import(name[level:], package, level) 237s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 237s tests/gaussian/test_handlers.py:8: in 237s from custodian.gaussian.handlers import GaussianErrorHandler, WallTimeErrorHandler 237s /usr/lib/python3/dist-packages/custodian/gaussian/handlers.py:16: in 237s from pymatgen.io.gaussian import GaussianInput, GaussianOutput 237s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:14: in 237s from pymatgen.core import Composition, Element, Molecule 237s /usr/lib/python3/dist-packages/pymatgen/core/__init__.py:13: in 237s from pymatgen.core.lattice import Lattice 237s /usr/lib/python3/dist-packages/pymatgen/core/lattice.py:21: in 237s from pymatgen.util.coord import pbc_shortest_vectors 237s /usr/lib/python3/dist-packages/pymatgen/util/coord.py:15: in 237s from pymatgen.util import coord_cython 237s E ImportError: cannot import name 'coord_cython' from 'pymatgen.util' (/usr/lib/python3/dist-packages/pymatgen/util/__init__.py) 237s _________________ ERROR collecting tests/gaussian/test_jobs.py _________________ 237s ImportError while importing test module '/tmp/autopkgtest.D89UhA/autopkgtest_tmp/runtests/tests/gaussian/test_jobs.py'. 237s Hint: make sure your test modules/packages have valid Python names. 237s Traceback: 237s /usr/lib/python3.14/importlib/__init__.py:88: in import_module 237s return _bootstrap._gcd_import(name[level:], package, level) 237s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 237s tests/gaussian/test_jobs.py:7: in 237s from custodian.gaussian.jobs import GaussianJob 237s /usr/lib/python3/dist-packages/custodian/gaussian/jobs.py:12: in 237s from pymatgen.io.gaussian import GaussianInput, GaussianOutput 237s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:14: in 237s from pymatgen.core import Composition, Element, Molecule 237s /usr/lib/python3/dist-packages/pymatgen/core/__init__.py:13: in 237s from pymatgen.core.lattice import Lattice 237s /usr/lib/python3/dist-packages/pymatgen/core/lattice.py:21: in 237s from pymatgen.util.coord import pbc_shortest_vectors 237s /usr/lib/python3/dist-packages/pymatgen/util/coord.py:15: in 237s from pymatgen.util import coord_cython 237s E ImportError: cannot import name 'coord_cython' from 'pymatgen.util' (/usr/lib/python3/dist-packages/pymatgen/util/__init__.py) 237s _______________ ERROR collecting tests/lobster/test_handlers.py ________________ 237s ImportError while importing test module '/tmp/autopkgtest.D89UhA/autopkgtest_tmp/runtests/tests/lobster/test_handlers.py'. 237s Hint: make sure your test modules/packages have valid Python names. 237s Traceback: 237s /usr/lib/python3.14/importlib/__init__.py:88: in import_module 237s return _bootstrap._gcd_import(name[level:], package, level) 237s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 237s tests/lobster/test_handlers.py:3: in 237s from custodian.lobster.handlers import ChargeSpillingValidator, EnoughBandsValidator, LobsterFilesValidator 237s /usr/lib/python3/dist-packages/custodian/lobster/handlers.py:5: in 237s from pymatgen.io.lobster import Lobsterout 237s /usr/lib/python3/dist-packages/pymatgen/io/lobster/__init__.py:10: in 237s from .inputs import Lobsterin 237s /usr/lib/python3/dist-packages/pymatgen/io/lobster/inputs.py:26: in 237s from pymatgen.core.structure import Structure 237s /usr/lib/python3/dist-packages/pymatgen/core/__init__.py:13: in 237s from pymatgen.core.lattice import Lattice 237s /usr/lib/python3/dist-packages/pymatgen/core/lattice.py:21: in 237s from pymatgen.util.coord import pbc_shortest_vectors 237s /usr/lib/python3/dist-packages/pymatgen/util/coord.py:15: in 237s from pymatgen.util import coord_cython 237s E ImportError: cannot import name 'coord_cython' from 'pymatgen.util' (/usr/lib/python3/dist-packages/pymatgen/util/__init__.py) 237s ________________ ERROR collecting tests/nwchem/test_handlers.py ________________ 237s ImportError while importing test module '/tmp/autopkgtest.D89UhA/autopkgtest_tmp/runtests/tests/nwchem/test_handlers.py'. 237s Hint: make sure your test modules/packages have valid Python names. 237s Traceback: 237s /usr/lib/python3.14/importlib/__init__.py:88: in import_module 237s return _bootstrap._gcd_import(name[level:], package, level) 237s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 237s tests/nwchem/test_handlers.py:5: in 237s from custodian.nwchem.handlers import NwchemErrorHandler 237s /usr/lib/python3/dist-packages/custodian/nwchem/handlers.py:8: in 237s from pymatgen.io.nwchem import NwInput, NwOutput 237s /usr/lib/python3/dist-packages/pymatgen/io/nwchem.py:33: in 237s from pymatgen.analysis.excitation import ExcitationSpectrum 237s /usr/lib/python3/dist-packages/pymatgen/analysis/excitation.py:5: in 237s from pymatgen.core.spectrum import Spectrum 237s /usr/lib/python3/dist-packages/pymatgen/core/__init__.py:13: in 237s from pymatgen.core.lattice import Lattice 237s /usr/lib/python3/dist-packages/pymatgen/core/lattice.py:21: in 237s from pymatgen.util.coord import pbc_shortest_vectors 237s /usr/lib/python3/dist-packages/pymatgen/util/coord.py:15: in 237s from pymatgen.util import coord_cython 237s E ImportError: cannot import name 'coord_cython' from 'pymatgen.util' (/usr/lib/python3/dist-packages/pymatgen/util/__init__.py) 237s _________________ ERROR collecting tests/vasp/test_handlers.py _________________ 237s ImportError while importing test module '/tmp/autopkgtest.D89UhA/autopkgtest_tmp/runtests/tests/vasp/test_handlers.py'. 237s Hint: make sure your test modules/packages have valid Python names. 237s Traceback: 237s /usr/lib/python3.14/importlib/__init__.py:88: in import_module 237s return _bootstrap._gcd_import(name[level:], package, level) 237s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 237s tests/vasp/test_handlers.py:10: in 237s from pymatgen.io.vasp.inputs import Incar, Kpoints, Structure, VaspInput 237s /usr/lib/python3/dist-packages/pymatgen/io/vasp/__init__.py:10: in 237s from .inputs import Incar, Kpoints, Poscar, Potcar, PotcarSingle, VaspInput 237s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:35: in 237s from pymatgen.core import SETTINGS, Element, Lattice, Structure, get_el_sp 237s /usr/lib/python3/dist-packages/pymatgen/core/__init__.py:13: in 237s from pymatgen.core.lattice import Lattice 237s /usr/lib/python3/dist-packages/pymatgen/core/lattice.py:21: in 237s from pymatgen.util.coord import pbc_shortest_vectors 237s /usr/lib/python3/dist-packages/pymatgen/util/coord.py:15: in 237s from pymatgen.util import coord_cython 237s E ImportError: cannot import name 'coord_cython' from 'pymatgen.util' (/usr/lib/python3/dist-packages/pymatgen/util/__init__.py) 237s ____________________ ERROR collecting tests/vasp/test_io.py ____________________ 237s ImportError while importing test module '/tmp/autopkgtest.D89UhA/autopkgtest_tmp/runtests/tests/vasp/test_io.py'. 237s Hint: make sure your test modules/packages have valid Python names. 237s Traceback: 237s /usr/lib/python3.14/importlib/__init__.py:88: in import_module 237s return _bootstrap._gcd_import(name[level:], package, level) 237s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 237s tests/vasp/test_io.py:5: in 237s from custodian.vasp.io import load_outcar, load_vasprun 237s /usr/lib/python3/dist-packages/custodian/vasp/io.py:3: in 237s from pymatgen.io.vasp.outputs import Outcar, Vasprun 237s /usr/lib/python3/dist-packages/pymatgen/io/vasp/__init__.py:10: in 237s from .inputs import Incar, Kpoints, Poscar, Potcar, PotcarSingle, VaspInput 237s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:35: in 237s from pymatgen.core import SETTINGS, Element, Lattice, Structure, get_el_sp 237s /usr/lib/python3/dist-packages/pymatgen/core/__init__.py:13: in 237s from pymatgen.core.lattice import Lattice 237s /usr/lib/python3/dist-packages/pymatgen/core/lattice.py:21: in 237s from pymatgen.util.coord import pbc_shortest_vectors 237s /usr/lib/python3/dist-packages/pymatgen/util/coord.py:15: in 237s from pymatgen.util import coord_cython 237s E ImportError: cannot import name 'coord_cython' from 'pymatgen.util' (/usr/lib/python3/dist-packages/pymatgen/util/__init__.py) 237s ___________________ ERROR collecting tests/vasp/test_jobs.py ___________________ 237s ImportError while importing test module '/tmp/autopkgtest.D89UhA/autopkgtest_tmp/runtests/tests/vasp/test_jobs.py'. 237s Hint: make sure your test modules/packages have valid Python names. 237s Traceback: 237s /usr/lib/python3.14/importlib/__init__.py:88: in import_module 237s return _bootstrap._gcd_import(name[level:], package, level) 237s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 237s tests/vasp/test_jobs.py:10: in 237s from pymatgen.io.vasp import Incar, Kpoints, Poscar 237s /usr/lib/python3/dist-packages/pymatgen/io/vasp/__init__.py:10: in 237s from .inputs import Incar, Kpoints, Poscar, Potcar, PotcarSingle, VaspInput 237s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:35: in 237s from pymatgen.core import SETTINGS, Element, Lattice, Structure, get_el_sp 237s /usr/lib/python3/dist-packages/pymatgen/core/__init__.py:13: in 237s from pymatgen.core.lattice import Lattice 237s /usr/lib/python3/dist-packages/pymatgen/core/lattice.py:21: in 237s from pymatgen.util.coord import pbc_shortest_vectors 237s /usr/lib/python3/dist-packages/pymatgen/util/coord.py:15: in 237s from pymatgen.util import coord_cython 237s E ImportError: cannot import name 'coord_cython' from 'pymatgen.util' (/usr/lib/python3/dist-packages/pymatgen/util/__init__.py) 237s __________________ ERROR collecting tests/vasp/test_utils.py ___________________ 237s ImportError while importing test module '/tmp/autopkgtest.D89UhA/autopkgtest_tmp/runtests/tests/vasp/test_utils.py'. 237s Hint: make sure your test modules/packages have valid Python names. 237s Traceback: 237s /usr/lib/python3.14/importlib/__init__.py:88: in import_module 237s return _bootstrap._gcd_import(name[level:], package, level) 237s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 237s tests/vasp/test_utils.py:8: in 237s from pymatgen.core import Lattice, Structure 237s /usr/lib/python3/dist-packages/pymatgen/core/__init__.py:13: in 237s from pymatgen.core.lattice import Lattice 237s /usr/lib/python3/dist-packages/pymatgen/core/lattice.py:21: in 237s from pymatgen.util.coord import pbc_shortest_vectors 237s /usr/lib/python3/dist-packages/pymatgen/util/coord.py:15: in 237s from pymatgen.util import coord_cython 237s E ImportError: cannot import name 'coord_cython' from 'pymatgen.util' (/usr/lib/python3/dist-packages/pymatgen/util/__init__.py) 237s ________________ ERROR collecting tests/vasp/test_validators.py ________________ 237s ImportError while importing test module '/tmp/autopkgtest.D89UhA/autopkgtest_tmp/runtests/tests/vasp/test_validators.py'. 237s Hint: make sure your test modules/packages have valid Python names. 237s Traceback: 237s /usr/lib/python3.14/importlib/__init__.py:88: in import_module 237s return _bootstrap._gcd_import(name[level:], package, level) 237s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 237s tests/vasp/test_validators.py:6: in 237s from custodian.vasp.validators import VaspAECCARValidator, VaspFilesValidator, VaspNpTMDValidator, VasprunXMLValidator 237s /usr/lib/python3/dist-packages/custodian/vasp/validators.py:9: in 237s from pymatgen.io.vasp import Chgcar, Incar 237s /usr/lib/python3/dist-packages/pymatgen/io/vasp/__init__.py:10: in 237s from .inputs import Incar, Kpoints, Poscar, Potcar, PotcarSingle, VaspInput 237s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:35: in 237s from pymatgen.core import SETTINGS, Element, Lattice, Structure, get_el_sp 237s /usr/lib/python3/dist-packages/pymatgen/core/__init__.py:13: in 237s from pymatgen.core.lattice import Lattice 237s /usr/lib/python3/dist-packages/pymatgen/core/lattice.py:21: in 237s from pymatgen.util.coord import pbc_shortest_vectors 237s /usr/lib/python3/dist-packages/pymatgen/util/coord.py:15: in 237s from pymatgen.util import coord_cython 237s E ImportError: cannot import name 'coord_cython' from 'pymatgen.util' (/usr/lib/python3/dist-packages/pymatgen/util/__init__.py) 237s =========================== short test summary info ============================ 237s ERROR tests/cp2k/test_handlers.py 237s ERROR tests/cp2k/test_jobs.py 237s ERROR tests/feff/test_handlers.py 237s ERROR tests/feff/test_jobs.py 237s ERROR tests/gaussian/test_handlers.py 237s ERROR tests/gaussian/test_jobs.py 237s ERROR tests/lobster/test_handlers.py 237s ERROR tests/nwchem/test_handlers.py 237s ERROR tests/vasp/test_handlers.py 237s ERROR tests/vasp/test_io.py 237s ERROR tests/vasp/test_jobs.py 237s ERROR tests/vasp/test_utils.py 237s ERROR tests/vasp/test_validators.py 237s !!!!!!!!!!!!!!!!!!! Interrupted: 13 errors during collection !!!!!!!!!!!!!!!!!!! 237s ======================== 3 skipped, 13 errors in 2.49s ========================= 238s autopkgtest [21:37:22]: test test-custodian: -----------------------] 238s autopkgtest [21:37:22]: test test-custodian: - - - - - - - - - - results - - - - - - - - - - 238s test-custodian FAIL non-zero exit status 2 239s autopkgtest [21:37:23]: @@@@@@@@@@@@@@@@@@@@ summary 239s test-custodian FAIL non-zero exit status 2