0s autopkgtest [05:32:27]: starting date and time: 2026-01-30 05:32:27+0000 0s autopkgtest [05:32:27]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [05:32:27]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work._4_qbemn/out --timeout-copy=6000 --needs-internet=try --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:ruamel.yaml --apt-upgrade custodian --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=ruamel.yaml/0.18.10+ds-1build1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-arm64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@sto01-arm64-16.secgroup --name adt-resolute-arm64-custodian-20260130-053227-juju-7f2275-prod-proposed-migration-environment-2-ed5ae95e-7fb5-47d8-aa9e-7883fa3adcaf --image adt/ubuntu-resolute-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-autopkgtest-workers-arm64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 4s Creating nova instance adt-resolute-arm64-custodian-20260130-053227-juju-7f2275-prod-proposed-migration-environment-2-ed5ae95e-7fb5-47d8-aa9e-7883fa3adcaf from image adt/ubuntu-resolute-arm64-server-20260130.img (UUID d80a3628-95a8-4c17-a25a-26b02882b363)... 62s autopkgtest [05:33:29]: testbed dpkg architecture: arm64 62s autopkgtest [05:33:29]: testbed apt version: 3.1.14 62s autopkgtest [05:33:29]: @@@@@@@@@@@@@@@@@@@@ test bed setup 62s autopkgtest [05:33:29]: testbed release detected to be: None 63s autopkgtest [05:33:30]: updating testbed package index (apt update) 64s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 64s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 64s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 64s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 64s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [103 kB] 64s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [33.0 kB] 65s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [2820 B] 65s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1600 kB] 65s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 Packages [120 kB] 65s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 c-n-f Metadata [4364 B] 65s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 Packages [12.3 kB] 65s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 c-n-f Metadata [328 B] 65s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 Packages [1166 kB] 65s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 c-n-f Metadata [21.9 kB] 65s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 Packages [25.4 kB] 65s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 c-n-f Metadata [720 B] 68s Fetched 3215 kB in 2s (1737 kB/s) 69s Reading package lists... 69s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 69s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 69s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 69s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 70s Reading package lists... 70s Reading package lists... 70s Building dependency tree... 70s Reading state information... 71s Calculating upgrade... 71s The following packages will be upgraded: 71s bzip2 inetutils-telnet libbz2-1.0 libsqlite3-0 telnet 71s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 71s Need to get 888 kB of archives. 71s After this operation, 2048 B of additional disk space will be used. 71s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 bzip2 arm64 1.0.8-6build2 [34.0 kB] 71s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 libbz2-1.0 arm64 1.0.8-6build2 [34.9 kB] 71s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 libsqlite3-0 arm64 3.46.1-9 [711 kB] 71s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 inetutils-telnet arm64 2:2.7-2ubuntu1 [104 kB] 71s Get:5 http://ftpmaster.internal/ubuntu resolute/main arm64 telnet all 0.17+2.7-2ubuntu1 [3636 B] 72s dpkg-preconfigure: unable to re-open stdin: No such file or directory 72s Fetched 888 kB in 0s (3163 kB/s) 72s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 135255 files and directories currently installed.) 72s Preparing to unpack .../bzip2_1.0.8-6build2_arm64.deb ... 72s Unpacking bzip2 (1.0.8-6build2) over (1.0.8-6build1) ... 72s Preparing to unpack .../libbz2-1.0_1.0.8-6build2_arm64.deb ... 72s Unpacking libbz2-1.0:arm64 (1.0.8-6build2) over (1.0.8-6build1) ... 72s Setting up libbz2-1.0:arm64 (1.0.8-6build2) ... 72s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 135255 files and directories currently installed.) 72s Preparing to unpack .../libsqlite3-0_3.46.1-9_arm64.deb ... 72s Unpacking libsqlite3-0:arm64 (3.46.1-9) over (3.46.1-8) ... 72s Preparing to unpack .../inetutils-telnet_2%3a2.7-2ubuntu1_arm64.deb ... 72s Unpacking inetutils-telnet (2:2.7-2ubuntu1) over (2:2.6-4ubuntu1) ... 72s Preparing to unpack .../telnet_0.17+2.7-2ubuntu1_all.deb ... 72s Unpacking telnet (0.17+2.7-2ubuntu1) over (0.17+2.6-4ubuntu1) ... 72s Setting up libsqlite3-0:arm64 (3.46.1-9) ... 73s Setting up inetutils-telnet (2:2.7-2ubuntu1) ... 73s Setting up bzip2 (1.0.8-6build2) ... 73s Setting up telnet (0.17+2.7-2ubuntu1) ... 73s Processing triggers for man-db (2.13.1-1) ... 73s Processing triggers for libc-bin (2.42-2ubuntu4) ... 73s autopkgtest [05:33:40]: upgrading testbed (apt dist-upgrade and autopurge) 73s Reading package lists... 74s Building dependency tree... 74s Reading state information... 74s Calculating upgrade... 74s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 74s Reading package lists... 75s Building dependency tree... 75s Reading state information... 75s Solving dependencies... 75s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 78s autopkgtest [05:33:45]: testbed running kernel: Linux 6.18.0-9-generic #9-Ubuntu SMP PREEMPT_DYNAMIC Mon Jan 12 16:41:39 UTC 2026 78s autopkgtest [05:33:45]: @@@@@@@@@@@@@@@@@@@@ apt-source custodian 85s Get:1 http://ftpmaster.internal/ubuntu resolute/universe custodian 2024.10.16-1 (dsc) [2442 B] 85s Get:2 http://ftpmaster.internal/ubuntu resolute/universe custodian 2024.10.16-1 (tar) [51.2 MB] 85s Get:3 http://ftpmaster.internal/ubuntu resolute/universe custodian 2024.10.16-1 (diff) [8360 B] 85s gpgv: Signature made Sat Feb 15 20:44:02 2025 UTC 85s gpgv: using RSA key 23C9A93E585819E9126D0A36573EF1E4BD5A01FA 85s gpgv: Can't check signature: No public key 85s dpkg-source: warning: cannot verify inline signature for ./custodian_2024.10.16-1.dsc: no acceptable signature found 87s autopkgtest [05:33:54]: testing package custodian version 2024.10.16-1 87s autopkgtest [05:33:54]: build not needed 101s autopkgtest [05:34:08]: test test-custodian: preparing testbed 101s Reading package lists... 102s Building dependency tree... 102s Reading state information... 102s Solving dependencies... 102s The following NEW packages will be installed: 102s fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lyx libblas3 102s libdeflate0 libfontconfig1 libgfortran5 libgomp1 libgraphite2-3 102s libharfbuzz0b libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 liblapack3 102s liblcms2-2 liblerc4 libopenjp2-7 libpython3.14-minimal libpython3.14-stdlib 102s libqhull-r8.0 libraqm0 libsharpyuv0 libsymspg2 libtcl8.6 libtiff6 libtk8.6 102s libwebp7 libwebpdemux2 libwebpmux3 libxft2 libxrender1 libxslt1.1 libxss1 102s libzopfli1 python-matplotlib-data python3-all python3-annotated-types 102s python3-brotli python3-bson python3-contourpy python3-custodian 102s python3-cycler python3-decorator python3-dnspython python3-email-validator 102s python3-fastjsonschema python3-fonttools python3-iniconfig python3-joblib 102s python3-jupyter-core python3-kiwisolver python3-latexcodec python3-lxml 102s python3-lz4 python3-matplotlib python3-monty python3-mpmath python3-nbformat 102s python3-networkx python3-numpy python3-numpy-dev python3-palettable 102s python3-pandas python3-pandas-lib python3-pil python3-pil.imagetk 102s python3-platformdirs python3-plotly python3-pluggy python3-psutil 102s python3-pybtex python3-pydantic python3-pydantic-core python3-pymatgen 102s python3-pytest python3-pytz python3-ruamel.yaml python3-ruamel.yaml.clib 102s python3-scipy python3-sentry-sdk python3-spglib python3-sympy 102s python3-tabulate python3-tenacity python3-tk python3-tqdm python3-traitlets 102s python3-typing-inspection python3-ufolib2 python3-uncertainties 102s python3-zopfli python3.13-tk python3.14 python3.14-minimal python3.14-tk 102s unicode-data x11-common 102s 0 upgraded, 99 newly installed, 0 to remove and 0 not upgraded. 102s Need to get 109 MB of archives. 102s After this operation, 596 MB of additional disk space will be used. 102s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-numpy-dev arm64 1:2.3.5+ds-3 [366 kB] 102s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 libblas3 arm64 3.12.1-7ubuntu1 [181 kB] 102s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 libgfortran5 arm64 15.2.0-12ubuntu1 [451 kB] 102s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 liblapack3 arm64 3.12.1-7ubuntu1 [2299 kB] 103s Get:5 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-numpy arm64 1:2.3.5+ds-3 [4569 kB] 103s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 libpython3.14-minimal arm64 3.14.2-1 [917 kB] 103s Get:7 http://ftpmaster.internal/ubuntu resolute/main arm64 python3.14-minimal arm64 3.14.2-1 [2548 kB] 105s Get:8 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-mono all 2.37-8build1 [502 kB] 105s Get:9 http://ftpmaster.internal/ubuntu resolute/main arm64 fonts-dejavu-core all 2.37-8build1 [834 kB] 106s Get:10 http://ftpmaster.internal/ubuntu resolute/main arm64 fontconfig-config arm64 2.17.1-3ubuntu1 [38.5 kB] 106s Get:11 http://ftpmaster.internal/ubuntu resolute/universe arm64 fonts-lyx all 2.5.0~RC2-3 [171 kB] 106s Get:12 http://ftpmaster.internal/ubuntu resolute/main arm64 libdeflate0 arm64 1.23-2 [46.4 kB] 106s Get:13 http://ftpmaster.internal/ubuntu resolute/main arm64 libfontconfig1 arm64 2.17.1-3ubuntu1 [144 kB] 106s Get:14 http://ftpmaster.internal/ubuntu resolute/main arm64 libgomp1 arm64 15.2.0-12ubuntu1 [147 kB] 106s Get:15 http://ftpmaster.internal/ubuntu resolute/main arm64 libgraphite2-3 arm64 1.3.14-11ubuntu1 [72.1 kB] 106s Get:16 http://ftpmaster.internal/ubuntu resolute/main arm64 libharfbuzz0b arm64 12.3.1-1 [510 kB] 106s Get:17 http://ftpmaster.internal/ubuntu resolute/main arm64 libimagequant0 arm64 2.18.0-1build1 [37.1 kB] 106s Get:18 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg-turbo8 arm64 2.1.5-4ubuntu2 [165 kB] 106s Get:19 http://ftpmaster.internal/ubuntu resolute/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 106s Get:20 http://ftpmaster.internal/ubuntu resolute/main arm64 liblcms2-2 arm64 2.17-1 [170 kB] 106s Get:21 http://ftpmaster.internal/ubuntu resolute/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu2 [174 kB] 106s Get:22 http://ftpmaster.internal/ubuntu resolute/main arm64 libpython3.14-stdlib arm64 3.14.2-1 [2351 kB] 108s Get:23 http://ftpmaster.internal/ubuntu resolute/universe arm64 libqhull-r8.0 arm64 2020.2-8 [191 kB] 108s Get:24 http://ftpmaster.internal/ubuntu resolute/main arm64 libraqm0 arm64 0.10.3-1 [15.0 kB] 108s Get:25 http://ftpmaster.internal/ubuntu resolute/main arm64 libsharpyuv0 arm64 1.5.0-0.1build1 [16.7 kB] 108s Get:26 http://ftpmaster.internal/ubuntu resolute/universe arm64 libsymspg2 arm64 2.7.0-1 [208 kB] 108s Get:27 http://ftpmaster.internal/ubuntu resolute/main arm64 libtcl8.6 arm64 8.6.17+dfsg-1 [1024 kB] 109s Get:28 http://ftpmaster.internal/ubuntu resolute/main arm64 libjbig0 arm64 2.1-6.1ubuntu3 [29.2 kB] 109s Get:29 http://ftpmaster.internal/ubuntu resolute/main arm64 libwebp7 arm64 1.5.0-0.1build1 [205 kB] 109s Get:30 http://ftpmaster.internal/ubuntu resolute/main arm64 libtiff6 arm64 4.7.0-3ubuntu3 [196 kB] 109s Get:31 http://ftpmaster.internal/ubuntu resolute/main arm64 libxrender1 arm64 1:0.9.12-1 [19.5 kB] 109s Get:32 http://ftpmaster.internal/ubuntu resolute/main arm64 libxft2 arm64 2.3.6-1build2 [43.2 kB] 109s Get:33 http://ftpmaster.internal/ubuntu resolute/main arm64 x11-common all 1:7.7+24ubuntu1 [22.4 kB] 109s Get:34 http://ftpmaster.internal/ubuntu resolute/main arm64 libxss1 arm64 1:1.2.3-1build4 [7102 B] 109s Get:35 http://ftpmaster.internal/ubuntu resolute/main arm64 libtk8.6 arm64 8.6.17-1 [811 kB] 109s Get:36 http://ftpmaster.internal/ubuntu resolute/main arm64 libwebpdemux2 arm64 1.5.0-0.1build1 [12.5 kB] 109s Get:37 http://ftpmaster.internal/ubuntu resolute/main arm64 libwebpmux3 arm64 1.5.0-0.1build1 [25.2 kB] 109s Get:38 http://ftpmaster.internal/ubuntu resolute/main arm64 libxslt1.1 arm64 1.1.43-0.3 [172 kB] 109s Get:39 http://ftpmaster.internal/ubuntu resolute/universe arm64 libzopfli1 arm64 1.0.3-3 [108 kB] 109s Get:40 http://ftpmaster.internal/ubuntu resolute/universe arm64 python-matplotlib-data all 3.10.7+dfsg1-1 [2930 kB] 110s Get:41 http://ftpmaster.internal/ubuntu resolute/main arm64 python3.14 arm64 3.14.2-1 [816 kB] 110s Get:42 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-all arm64 3.13.9-3 [890 B] 110s Get:43 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-annotated-types all 0.7.0-1 [19.4 kB] 110s Get:44 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-brotli arm64 1.1.0-2build6 [343 kB] 110s Get:45 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-bson all 4.16.0-1 [44.8 kB] 110s Get:46 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-contourpy arm64 1.3.3-1 [245 kB] 110s Get:47 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pytz all 2025.2-5 [32.4 kB] 110s Get:48 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pandas-lib arm64 2.3.3+dfsg-3 [6290 kB] 111s Get:49 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pandas all 2.3.3+dfsg-3 [2948 kB] 111s Get:50 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pydantic-core arm64 2.41.5-2 [2170 kB] 111s Get:51 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-typing-inspection all 0.4.2-1 [13.1 kB] 111s Get:52 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-dnspython all 2.7.0-1ubuntu2 [167 kB] 111s Get:53 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-email-validator all 2.2.0-1 [28.5 kB] 111s Get:54 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pydantic arm64 2.12.5-2 [312 kB] 111s Get:55 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-tqdm all 4.67.1-7 [93.3 kB] 111s Get:56 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-ruamel.yaml.clib arm64 0.2.15+ds-1 [178 kB] 111s Get:57 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 python3-ruamel.yaml all 0.18.10+ds-1build1 [127 kB] 111s Get:58 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-monty all 2025.3.3-1 [40.4 kB] 111s Get:59 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-psutil arm64 7.1.0-1ubuntu1 [191 kB] 111s Get:60 http://ftpmaster.internal/ubuntu resolute/main arm64 libopenjp2-7 arm64 2.5.4-1 [180 kB] 111s Get:61 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-pil arm64 12.0.0-1ubuntu1 [486 kB] 111s Get:62 http://ftpmaster.internal/ubuntu resolute/main arm64 python3.13-tk arm64 3.13.11-1 [106 kB] 111s Get:63 http://ftpmaster.internal/ubuntu resolute/main arm64 python3.14-tk arm64 3.14.2-1 [108 kB] 111s Get:64 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-tk arm64 3.13.9-3 [11.2 kB] 111s Get:65 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pil.imagetk arm64 12.0.0-1ubuntu1 [9532 B] 111s Get:66 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-cycler all 0.12.1-2 [9850 B] 111s Get:67 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-lxml arm64 6.0.2-1 [2155 kB] 111s Get:68 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-lz4 arm64 4.4.5+dfsg-1 [27.9 kB] 111s Get:69 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-decorator all 5.2.1-2 [28.1 kB] 111s Get:70 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-scipy arm64 1.16.3-4 [17.5 MB] 112s Get:71 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-mpmath all 1.3.0-2 [423 kB] 112s Get:72 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-sympy all 1.14.0-2 [4306 kB] 113s Get:73 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-ufolib2 all 0.18.1+dfsg1-1 [33.7 kB] 113s Get:74 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-zopfli arm64 0.4.0-1 [10.8 kB] 113s Get:75 http://ftpmaster.internal/ubuntu resolute/universe arm64 unicode-data all 16.0.0-1build1 [9543 kB] 113s Get:76 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-fonttools arm64 4.61.1-3 [1680 kB] 113s Get:77 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-kiwisolver arm64 1.4.10~rc0-1 [60.1 kB] 113s Get:78 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-matplotlib arm64 3.10.7+dfsg1-1 [17.1 MB] 115s Get:79 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-sentry-sdk all 2.22.0-1 [199 kB] 115s Get:80 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-custodian all 2024.10.16-1 [90.9 kB] 115s Get:81 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-fastjsonschema all 2.21.1-1 [20.4 kB] 115s Get:82 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-iniconfig all 2.1.0-2 [6962 B] 115s Get:83 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-joblib all 1.5.2-1 [210 kB] 115s Get:84 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-platformdirs all 4.5.1-1 [17.1 kB] 115s Get:85 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-traitlets all 5.14.3+really5.14.3-2 [71.7 kB] 115s Get:86 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-jupyter-core all 5.9.1-1 [28.9 kB] 115s Get:87 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-latexcodec all 3.0.0-1 [16.6 kB] 115s Get:88 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-nbformat all 5.10.4-1 [39.2 kB] 115s Get:89 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-networkx all 3.2.1-4ubuntu2 [11.8 MB] 116s Get:90 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-palettable all 3.3.3-3 [72.6 kB] 116s Get:91 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-tenacity all 9.0.0-0ubuntu1 [17.0 kB] 116s Get:92 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-plotly all 5.20.0+dfsg-1.1 [2766 kB] 116s Get:93 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pluggy all 1.6.0-2 [21.1 kB] 116s Get:94 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pybtex all 0.25.1-1 [70.0 kB] 116s Get:95 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-spglib arm64 2.7.0-1 [176 kB] 116s Get:96 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-tabulate all 0.9.0-1build1 [45.4 kB] 116s Get:97 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-uncertainties all 3.2.3-4 [51.8 kB] 116s Get:98 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pymatgen arm64 2025.2.18+dfsg1-5 [2607 kB] 116s Get:99 http://ftpmaster.internal/ubuntu resolute/universe arm64 python3-pytest all 9.0.2-2 [277 kB] 117s Fetched 109 MB in 14s (7720 kB/s) 117s Selecting previously unselected package python3-numpy-dev:arm64. 117s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 135255 files and directories currently installed.) 117s Preparing to unpack .../00-python3-numpy-dev_1%3a2.3.5+ds-3_arm64.deb ... 117s Unpacking python3-numpy-dev:arm64 (1:2.3.5+ds-3) ... 117s Selecting previously unselected package libblas3:arm64. 117s Preparing to unpack .../01-libblas3_3.12.1-7ubuntu1_arm64.deb ... 117s Unpacking libblas3:arm64 (3.12.1-7ubuntu1) ... 117s Selecting previously unselected package libgfortran5:arm64. 117s Preparing to 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libfontconfig1:arm64 (2.17.1-3ubuntu1) ... 118s Selecting previously unselected package libgomp1:arm64. 118s Preparing to unpack .../13-libgomp1_15.2.0-12ubuntu1_arm64.deb ... 118s Unpacking libgomp1:arm64 (15.2.0-12ubuntu1) ... 118s Selecting previously unselected package libgraphite2-3:arm64. 118s Preparing to unpack .../14-libgraphite2-3_1.3.14-11ubuntu1_arm64.deb ... 118s Unpacking libgraphite2-3:arm64 (1.3.14-11ubuntu1) ... 118s Selecting previously unselected package libharfbuzz0b:arm64. 118s Preparing to unpack .../15-libharfbuzz0b_12.3.1-1_arm64.deb ... 118s Unpacking libharfbuzz0b:arm64 (12.3.1-1) ... 118s Selecting previously unselected package libimagequant0:arm64. 118s Preparing to unpack .../16-libimagequant0_2.18.0-1build1_arm64.deb ... 118s Unpacking libimagequant0:arm64 (2.18.0-1build1) ... 118s Selecting previously unselected package libjpeg-turbo8:arm64. 118s Preparing to unpack .../17-libjpeg-turbo8_2.1.5-4ubuntu2_arm64.deb ... 118s Unpacking libjpeg-turbo8:arm64 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libraqm0:arm64. 119s Preparing to unpack .../23-libraqm0_0.10.3-1_arm64.deb ... 119s Unpacking libraqm0:arm64 (0.10.3-1) ... 119s Selecting previously unselected package libsharpyuv0:arm64. 119s Preparing to unpack .../24-libsharpyuv0_1.5.0-0.1build1_arm64.deb ... 119s Unpacking libsharpyuv0:arm64 (1.5.0-0.1build1) ... 119s Selecting previously unselected package libsymspg2:arm64. 119s Preparing to unpack .../25-libsymspg2_2.7.0-1_arm64.deb ... 119s Unpacking libsymspg2:arm64 (2.7.0-1) ... 119s Selecting previously unselected package libtcl8.6:arm64. 119s Preparing to unpack .../26-libtcl8.6_8.6.17+dfsg-1_arm64.deb ... 119s Unpacking libtcl8.6:arm64 (8.6.17+dfsg-1) ... 119s Selecting previously unselected package libjbig0:arm64. 119s Preparing to unpack .../27-libjbig0_2.1-6.1ubuntu3_arm64.deb ... 119s Unpacking libjbig0:arm64 (2.1-6.1ubuntu3) ... 119s Selecting previously unselected package libwebp7:arm64. 119s Preparing to unpack .../28-libwebp7_1.5.0-0.1build1_arm64.deb ... 119s 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libtk8.6:arm64. 119s Preparing to unpack .../34-libtk8.6_8.6.17-1_arm64.deb ... 119s Unpacking libtk8.6:arm64 (8.6.17-1) ... 119s Selecting previously unselected package libwebpdemux2:arm64. 119s Preparing to unpack .../35-libwebpdemux2_1.5.0-0.1build1_arm64.deb ... 119s Unpacking libwebpdemux2:arm64 (1.5.0-0.1build1) ... 119s Selecting previously unselected package libwebpmux3:arm64. 119s Preparing to unpack .../36-libwebpmux3_1.5.0-0.1build1_arm64.deb ... 119s Unpacking libwebpmux3:arm64 (1.5.0-0.1build1) ... 119s Selecting previously unselected package libxslt1.1:arm64. 119s Preparing to unpack .../37-libxslt1.1_1.1.43-0.3_arm64.deb ... 119s Unpacking libxslt1.1:arm64 (1.1.43-0.3) ... 119s Selecting previously unselected package libzopfli1. 119s Preparing to unpack .../38-libzopfli1_1.0.3-3_arm64.deb ... 119s Unpacking libzopfli1 (1.0.3-3) ... 119s Selecting previously unselected package python-matplotlib-data. 119s Preparing to unpack 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unpack .../87-python3-nbformat_5.10.4-1_all.deb ... 123s Unpacking python3-nbformat (5.10.4-1) ... 123s Selecting previously unselected package python3-networkx. 123s Preparing to unpack .../88-python3-networkx_3.2.1-4ubuntu2_all.deb ... 123s Unpacking python3-networkx (3.2.1-4ubuntu2) ... 124s Selecting previously unselected package python3-palettable. 124s Preparing to unpack .../89-python3-palettable_3.3.3-3_all.deb ... 124s Unpacking python3-palettable (3.3.3-3) ... 124s Selecting previously unselected package python3-tenacity. 124s Preparing to unpack .../90-python3-tenacity_9.0.0-0ubuntu1_all.deb ... 124s Unpacking python3-tenacity (9.0.0-0ubuntu1) ... 124s Selecting previously unselected package python3-plotly. 124s Preparing to unpack .../91-python3-plotly_5.20.0+dfsg-1.1_all.deb ... 124s Unpacking python3-plotly (5.20.0+dfsg-1.1) ... 125s Selecting previously unselected package python3-pluggy. 125s Preparing to unpack .../92-python3-pluggy_1.6.0-2_all.deb ... 125s Unpacking python3-pluggy (1.6.0-2) ... 125s Selecting previously unselected package python3-pybtex. 125s Preparing to unpack .../93-python3-pybtex_0.25.1-1_all.deb ... 125s Unpacking python3-pybtex (0.25.1-1) ... 125s Selecting previously unselected package python3-spglib. 125s Preparing to unpack .../94-python3-spglib_2.7.0-1_arm64.deb ... 125s Unpacking python3-spglib (2.7.0-1) ... 125s Selecting previously unselected package python3-tabulate. 125s Preparing to unpack .../95-python3-tabulate_0.9.0-1build1_all.deb ... 125s Unpacking python3-tabulate (0.9.0-1build1) ... 125s Selecting previously unselected package python3-uncertainties. 125s Preparing to unpack .../96-python3-uncertainties_3.2.3-4_all.deb ... 125s Unpacking python3-uncertainties (3.2.3-4) ... 125s Selecting previously unselected package python3-pymatgen. 125s Preparing to unpack .../97-python3-pymatgen_2025.2.18+dfsg1-5_arm64.deb ... 125s Unpacking python3-pymatgen (2025.2.18+dfsg1-5) ... 125s Selecting previously unselected package python3-pytest. 125s Preparing to unpack .../98-python3-pytest_9.0.2-2_all.deb ... 125s Unpacking python3-pytest (9.0.2-2) ... 125s Setting up libgraphite2-3:arm64 (1.3.14-11ubuntu1) ... 125s Setting up liblcms2-2:arm64 (2.17-1) ... 125s Setting up python3-iniconfig (2.1.0-2) ... 126s Setting up libsharpyuv0:arm64 (1.5.0-0.1build1) ... 126s Setting up python3-pydantic-core (2.41.5-2) ... 126s Setting up liblerc4:arm64 (4.0.0+ds-5ubuntu2) ... 126s Setting up python3-typing-inspection (0.4.2-1) ... 126s Setting up libxrender1:arm64 (1:0.9.12-1) ... 126s Setting up python3-joblib (1.5.2-1) ... 127s Setting up python3-lz4 (4.4.5+dfsg-1) ... 127s Setting up fonts-lyx (2.5.0~RC2-3) ... 127s Setting up python3-tenacity (9.0.0-0ubuntu1) ... 127s Setting up libpython3.14-minimal:arm64 (3.14.2-1) ... 127s Setting up python3-tqdm (4.67.1-7) ... 127s Setting up python3-ruamel.yaml.clib (0.2.15+ds-1) ... 127s Setting up x11-common (1:7.7+24ubuntu1) ... 128s Setting up libdeflate0:arm64 (1.23-2) ... 128s Setting up python3-tabulate (0.9.0-1build1) ... 128s Setting up python3-latexcodec (3.0.0-1) ... 128s Setting up libqhull-r8.0:arm64 (2020.2-8) ... 128s Setting up python3-pytz (2025.2-5) ... 128s Setting up libgomp1:arm64 (15.2.0-12ubuntu1) ... 128s Setting up python3-networkx (3.2.1-4ubuntu2) ... 131s Setting up libjbig0:arm64 (2.1-6.1ubuntu3) ... 131s Setting up python3-annotated-types (0.7.0-1) ... 131s Setting up python3-platformdirs (4.5.1-1) ... 131s Setting up python3-psutil (7.1.0-1ubuntu1) ... 131s Setting up unicode-data (16.0.0-1build1) ... 131s Setting up libsymspg2:arm64 (2.7.0-1) ... 132s Setting up python3-bson (4.16.0-1) ... 132s Setting up python3-palettable (3.3.3-3) ... 132s Setting up python3-decorator (5.2.1-2) ... 133s Setting up libblas3:arm64 (3.12.1-7ubuntu1) ... 133s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 133s Setting up libzopfli1 (1.0.3-3) ... 133s Setting up python3-brotli (1.1.0-2build6) ... 133s Setting up python3-cycler (0.12.1-2) ... 133s Setting up libimagequant0:arm64 (2.18.0-1build1) ... 133s Setting up python3-sentry-sdk (2.22.0-1) ... 134s Setting up fonts-dejavu-mono (2.37-8build1) ... 134s Setting up python3-kiwisolver (1.4.10~rc0-1) ... 134s Setting up python3-numpy-dev:arm64 (1:2.3.5+ds-3) ... 134s Setting up libtcl8.6:arm64 (8.6.17+dfsg-1) ... 134s Setting up fonts-dejavu-core (2.37-8build1) ... 134s Setting up libjpeg-turbo8:arm64 (2.1.5-4ubuntu2) ... 134s Setting up libgfortran5:arm64 (15.2.0-12ubuntu1) ... 134s Setting up python3-pluggy (1.6.0-2) ... 134s Setting up libwebp7:arm64 (1.5.0-0.1build1) ... 134s Setting up python3-pybtex (0.25.1-1) ... 134s Setting up python3-fastjsonschema (2.21.1-1) ... 135s Setting up python3-ruamel.yaml (0.18.10+ds-1build1) ... 135s Setting up python3-dnspython (2.7.0-1ubuntu2) ... 136s Setting up python3-traitlets (5.14.3+really5.14.3-2) ... 136s Setting up libxslt1.1:arm64 (1.1.43-0.3) ... 136s Setting up libopenjp2-7:arm64 (2.5.4-1) ... 136s Setting up libharfbuzz0b:arm64 (12.3.1-1) ... 136s Setting up python3-email-validator (2.2.0-1) ... 136s Setting up libxss1:arm64 (1:1.2.3-1build4) ... 136s Setting up python3-mpmath (1.3.0-2) ... 137s Setting up python-matplotlib-data (3.10.7+dfsg1-1) ... 137s Setting up libwebpmux3:arm64 (1.5.0-0.1build1) ... 137s Setting up python3.14-minimal (3.14.2-1) ... 138s Setting up python3-jupyter-core (5.9.1-1) ... 138s Setting up python3-uncertainties (3.2.3-4) ... 139s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 139s Setting up python3-sympy (1.14.0-2) ... 151s /usr/lib/python3/dist-packages/sympy/testing/runtests.py:283: SyntaxWarning: 'return' in a 'finally' block 151s return p.returncode 151s Setting up liblapack3:arm64 (3.12.1-7ubuntu1) ... 151s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 151s Setting up libpython3.14-stdlib:arm64 (3.14.2-1) ... 151s Setting up fontconfig-config (2.17.1-3ubuntu1) ... 151s Setting up python3-pytest (9.0.2-2) ... 152s Setting up libwebpdemux2:arm64 (1.5.0-0.1build1) ... 152s Setting up python3-nbformat (5.10.4-1) ... 153s Setting up python3-zopfli (0.4.0-1) ... 153s Setting up python3-pydantic (2.12.5-2) ... 153s Setting up libraqm0:arm64 (0.10.3-1) ... 153s Setting up python3-plotly (5.20.0+dfsg-1.1) ... 165s Setting up python3-numpy (1:2.3.5+ds-3) ... 169s Setting up python3-lxml:arm64 (6.0.2-1) ... 169s Setting up libtiff6:arm64 (4.7.0-3ubuntu3) ... 169s Setting up python3-contourpy (1.3.3-1) ... 169s Setting up libfontconfig1:arm64 (2.17.1-3ubuntu1) ... 169s Setting up python3.14 (3.14.2-1) ... 170s Setting up python3-spglib (2.7.0-1) ... 171s Setting up libxft2:arm64 (2.3.6-1build2) ... 171s Setting up python3-scipy (1.16.3-4) ... 179s Setting up libtk8.6:arm64 (8.6.17-1) ... 179s Setting up python3-pandas-lib:arm64 (2.3.3+dfsg-3) ... 179s Setting up python3-all (3.13.9-3) ... 179s Setting up python3.13-tk (3.13.11-1) ... 179s Setting up python3-pil:arm64 (12.0.0-1ubuntu1) ... 179s Setting up python3-pandas (2.3.3+dfsg-3) ... 189s Setting up python3-monty (2025.3.3-1) ... 189s Setting up python3.14-tk (3.14.2-1) ... 189s Setting up python3-tk (3.13.9-3) ... 189s Setting up python3-pil.imagetk:arm64 (12.0.0-1ubuntu1) ... 189s Setting up python3-fonttools (4.61.1-3) ... 191s Setting up python3-ufolib2 (0.18.1+dfsg1-1) ... 192s Setting up python3-matplotlib (3.10.7+dfsg1-1) ... 195s Setting up python3-pymatgen (2025.2.18+dfsg1-5) ... 198s Setting up python3-custodian (2024.10.16-1) ... 198s Processing triggers for libc-bin (2.42-2ubuntu4) ... 198s Processing triggers for systemd (259-1ubuntu2) ... 198s Processing triggers for man-db (2.13.1-1) ... 199s autopkgtest [05:35:46]: test test-custodian: [----------------------- 200s ============================= test session starts ============================== 200s platform linux -- Python 3.14.2, pytest-9.0.2, pluggy-1.6.0 -- /usr/bin/python3.14 200s cachedir: .pytest_cache 200s rootdir: /tmp/autopkgtest.DKtR6J/autopkgtest_tmp/runtests 200s plugins: typeguard-4.4.4 203s collecting ... collected 18 items / 13 errors / 3 skipped 203s 203s ==================================== ERRORS ==================================== 203s _________________ ERROR collecting tests/cp2k/test_handlers.py _________________ 203s ImportError while importing test module '/tmp/autopkgtest.DKtR6J/autopkgtest_tmp/runtests/tests/cp2k/test_handlers.py'. 203s Hint: make sure your test modules/packages have valid Python names. 203s Traceback: 203s /usr/lib/python3.14/importlib/__init__.py:88: in import_module 203s return _bootstrap._gcd_import(name[level:], package, level) 203s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 203s tests/cp2k/test_handlers.py:11: in 203s from pymatgen.io.cp2k.inputs import Keyword, KeywordList 203s /usr/lib/python3/dist-packages/pymatgen/io/cp2k/inputs.py:39: in 203s from pymatgen.core import Element 203s /usr/lib/python3/dist-packages/pymatgen/core/__init__.py:13: in 203s from pymatgen.core.lattice import Lattice 203s /usr/lib/python3/dist-packages/pymatgen/core/lattice.py:21: in 203s from pymatgen.util.coord import pbc_shortest_vectors 203s /usr/lib/python3/dist-packages/pymatgen/util/coord.py:15: in 203s from pymatgen.util import coord_cython 203s E ImportError: cannot import name 'coord_cython' from 'pymatgen.util' (/usr/lib/python3/dist-packages/pymatgen/util/__init__.py) 203s ___________________ ERROR collecting tests/cp2k/test_jobs.py ___________________ 203s ImportError while importing test module '/tmp/autopkgtest.DKtR6J/autopkgtest_tmp/runtests/tests/cp2k/test_jobs.py'. 203s Hint: make sure your test modules/packages have valid Python names. 203s Traceback: 203s /usr/lib/python3.14/importlib/__init__.py:88: in import_module 203s return _bootstrap._gcd_import(name[level:], package, level) 203s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 203s tests/cp2k/test_jobs.py:10: in 203s from custodian.cp2k.jobs import Cp2kJob 203s /usr/lib/python3/dist-packages/custodian/cp2k/jobs.py:10: in 203s from pymatgen.io.cp2k.inputs import Cp2kInput, Keyword 203s /usr/lib/python3/dist-packages/pymatgen/io/cp2k/inputs.py:39: in 203s from pymatgen.core import Element 203s /usr/lib/python3/dist-packages/pymatgen/core/__init__.py:13: in 203s from pymatgen.core.lattice import Lattice 203s /usr/lib/python3/dist-packages/pymatgen/core/lattice.py:21: in 203s from pymatgen.util.coord import pbc_shortest_vectors 203s /usr/lib/python3/dist-packages/pymatgen/util/coord.py:15: in 203s from pymatgen.util import coord_cython 203s E ImportError: cannot import name 'coord_cython' from 'pymatgen.util' (/usr/lib/python3/dist-packages/pymatgen/util/__init__.py) 203s _________________ ERROR collecting tests/feff/test_handlers.py _________________ 203s ImportError while importing test module '/tmp/autopkgtest.DKtR6J/autopkgtest_tmp/runtests/tests/feff/test_handlers.py'. 203s Hint: make sure your test modules/packages have valid Python names. 203s Traceback: 203s /usr/lib/python3.14/importlib/__init__.py:88: in import_module 203s return _bootstrap._gcd_import(name[level:], package, level) 203s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 203s tests/feff/test_handlers.py:6: in 203s from custodian.feff.handlers import UnconvergedErrorHandler 203s /usr/lib/python3/dist-packages/custodian/feff/handlers.py:9: in 203s from pymatgen.io.feff.sets import FEFFDictSet 203s /usr/lib/python3/dist-packages/pymatgen/io/feff/__init__.py:9: in 203s from .inputs import ( 203s /usr/lib/python3/dist-packages/pymatgen/io/feff/inputs.py:20: in 203s from pymatgen.core import Element, Lattice, Molecule, Structure 203s /usr/lib/python3/dist-packages/pymatgen/core/__init__.py:13: in 203s from pymatgen.core.lattice import Lattice 203s /usr/lib/python3/dist-packages/pymatgen/core/lattice.py:21: in 203s from pymatgen.util.coord import pbc_shortest_vectors 203s /usr/lib/python3/dist-packages/pymatgen/util/coord.py:15: in 203s from pymatgen.util import coord_cython 203s E ImportError: cannot import name 'coord_cython' from 'pymatgen.util' (/usr/lib/python3/dist-packages/pymatgen/util/__init__.py) 203s ___________________ ERROR collecting tests/feff/test_jobs.py ___________________ 203s ImportError while importing test module '/tmp/autopkgtest.DKtR6J/autopkgtest_tmp/runtests/tests/feff/test_jobs.py'. 203s Hint: make sure your test modules/packages have valid Python names. 203s Traceback: 203s /usr/lib/python3.14/importlib/__init__.py:88: in import_module 203s return _bootstrap._gcd_import(name[level:], package, level) 203s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 203s tests/feff/test_jobs.py:5: in 203s from pymatgen.io.feff.inputs import Atoms, Tags 203s /usr/lib/python3/dist-packages/pymatgen/io/feff/__init__.py:9: in 203s from .inputs import ( 203s /usr/lib/python3/dist-packages/pymatgen/io/feff/inputs.py:20: in 203s from pymatgen.core import Element, Lattice, Molecule, Structure 203s /usr/lib/python3/dist-packages/pymatgen/core/__init__.py:13: in 203s from pymatgen.core.lattice import Lattice 203s /usr/lib/python3/dist-packages/pymatgen/core/lattice.py:21: in 203s from pymatgen.util.coord import pbc_shortest_vectors 203s /usr/lib/python3/dist-packages/pymatgen/util/coord.py:15: in 203s from pymatgen.util import coord_cython 203s E ImportError: cannot import name 'coord_cython' from 'pymatgen.util' (/usr/lib/python3/dist-packages/pymatgen/util/__init__.py) 203s _______________ ERROR collecting tests/gaussian/test_handlers.py _______________ 203s ImportError while importing test module '/tmp/autopkgtest.DKtR6J/autopkgtest_tmp/runtests/tests/gaussian/test_handlers.py'. 203s Hint: make sure your test modules/packages have valid Python names. 203s Traceback: 203s /usr/lib/python3.14/importlib/__init__.py:88: in import_module 203s return _bootstrap._gcd_import(name[level:], package, level) 203s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 203s tests/gaussian/test_handlers.py:8: in 203s from custodian.gaussian.handlers import GaussianErrorHandler, WallTimeErrorHandler 203s /usr/lib/python3/dist-packages/custodian/gaussian/handlers.py:16: in 203s from pymatgen.io.gaussian import GaussianInput, GaussianOutput 203s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:14: in 203s from pymatgen.core import Composition, Element, Molecule 203s /usr/lib/python3/dist-packages/pymatgen/core/__init__.py:13: in 203s from pymatgen.core.lattice import Lattice 203s /usr/lib/python3/dist-packages/pymatgen/core/lattice.py:21: in 203s from pymatgen.util.coord import pbc_shortest_vectors 203s /usr/lib/python3/dist-packages/pymatgen/util/coord.py:15: in 203s from pymatgen.util import coord_cython 203s E ImportError: cannot import name 'coord_cython' from 'pymatgen.util' (/usr/lib/python3/dist-packages/pymatgen/util/__init__.py) 203s _________________ ERROR collecting tests/gaussian/test_jobs.py _________________ 203s ImportError while importing test module '/tmp/autopkgtest.DKtR6J/autopkgtest_tmp/runtests/tests/gaussian/test_jobs.py'. 203s Hint: make sure your test modules/packages have valid Python names. 203s Traceback: 203s /usr/lib/python3.14/importlib/__init__.py:88: in import_module 203s return _bootstrap._gcd_import(name[level:], package, level) 203s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 203s tests/gaussian/test_jobs.py:7: in 203s from custodian.gaussian.jobs import GaussianJob 203s /usr/lib/python3/dist-packages/custodian/gaussian/jobs.py:12: in 203s from pymatgen.io.gaussian import GaussianInput, GaussianOutput 203s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:14: in 203s from pymatgen.core import Composition, Element, Molecule 203s /usr/lib/python3/dist-packages/pymatgen/core/__init__.py:13: in 203s from pymatgen.core.lattice import Lattice 203s /usr/lib/python3/dist-packages/pymatgen/core/lattice.py:21: in 203s from pymatgen.util.coord import pbc_shortest_vectors 203s /usr/lib/python3/dist-packages/pymatgen/util/coord.py:15: in 203s from pymatgen.util import coord_cython 203s E ImportError: cannot import name 'coord_cython' from 'pymatgen.util' (/usr/lib/python3/dist-packages/pymatgen/util/__init__.py) 203s _______________ ERROR collecting tests/lobster/test_handlers.py ________________ 203s ImportError while importing test module '/tmp/autopkgtest.DKtR6J/autopkgtest_tmp/runtests/tests/lobster/test_handlers.py'. 203s Hint: make sure your test modules/packages have valid Python names. 203s Traceback: 203s /usr/lib/python3.14/importlib/__init__.py:88: in import_module 203s return _bootstrap._gcd_import(name[level:], package, level) 203s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 203s tests/lobster/test_handlers.py:3: in 203s from custodian.lobster.handlers import ChargeSpillingValidator, EnoughBandsValidator, LobsterFilesValidator 203s /usr/lib/python3/dist-packages/custodian/lobster/handlers.py:5: in 203s from pymatgen.io.lobster import Lobsterout 203s /usr/lib/python3/dist-packages/pymatgen/io/lobster/__init__.py:10: in 203s from .inputs import Lobsterin 203s /usr/lib/python3/dist-packages/pymatgen/io/lobster/inputs.py:26: in 203s from pymatgen.core.structure import Structure 203s /usr/lib/python3/dist-packages/pymatgen/core/__init__.py:13: in 203s from pymatgen.core.lattice import Lattice 203s /usr/lib/python3/dist-packages/pymatgen/core/lattice.py:21: in 203s from pymatgen.util.coord import pbc_shortest_vectors 203s /usr/lib/python3/dist-packages/pymatgen/util/coord.py:15: in 203s from pymatgen.util import coord_cython 203s E ImportError: cannot import name 'coord_cython' from 'pymatgen.util' (/usr/lib/python3/dist-packages/pymatgen/util/__init__.py) 203s ________________ ERROR collecting tests/nwchem/test_handlers.py ________________ 203s ImportError while importing test module '/tmp/autopkgtest.DKtR6J/autopkgtest_tmp/runtests/tests/nwchem/test_handlers.py'. 203s Hint: make sure your test modules/packages have valid Python names. 203s Traceback: 203s /usr/lib/python3.14/importlib/__init__.py:88: in import_module 203s return _bootstrap._gcd_import(name[level:], package, level) 203s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 203s tests/nwchem/test_handlers.py:5: in 203s from custodian.nwchem.handlers import NwchemErrorHandler 203s /usr/lib/python3/dist-packages/custodian/nwchem/handlers.py:8: in 203s from pymatgen.io.nwchem import NwInput, NwOutput 203s /usr/lib/python3/dist-packages/pymatgen/io/nwchem.py:33: in 203s from pymatgen.analysis.excitation import ExcitationSpectrum 203s /usr/lib/python3/dist-packages/pymatgen/analysis/excitation.py:5: in 203s from pymatgen.core.spectrum import Spectrum 203s /usr/lib/python3/dist-packages/pymatgen/core/__init__.py:13: in 203s from pymatgen.core.lattice import Lattice 203s /usr/lib/python3/dist-packages/pymatgen/core/lattice.py:21: in 203s from pymatgen.util.coord import pbc_shortest_vectors 203s /usr/lib/python3/dist-packages/pymatgen/util/coord.py:15: in 203s from pymatgen.util import coord_cython 203s E ImportError: cannot import name 'coord_cython' from 'pymatgen.util' (/usr/lib/python3/dist-packages/pymatgen/util/__init__.py) 203s _________________ ERROR collecting tests/vasp/test_handlers.py _________________ 203s ImportError while importing test module '/tmp/autopkgtest.DKtR6J/autopkgtest_tmp/runtests/tests/vasp/test_handlers.py'. 203s Hint: make sure your test modules/packages have valid Python names. 203s Traceback: 203s /usr/lib/python3.14/importlib/__init__.py:88: in import_module 203s return _bootstrap._gcd_import(name[level:], package, level) 203s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 203s tests/vasp/test_handlers.py:10: in 203s from pymatgen.io.vasp.inputs import Incar, Kpoints, Structure, VaspInput 203s /usr/lib/python3/dist-packages/pymatgen/io/vasp/__init__.py:10: in 203s from .inputs import Incar, Kpoints, Poscar, Potcar, PotcarSingle, VaspInput 203s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:35: in 203s from pymatgen.core import SETTINGS, Element, Lattice, Structure, get_el_sp 203s /usr/lib/python3/dist-packages/pymatgen/core/__init__.py:13: in 203s from pymatgen.core.lattice import Lattice 203s /usr/lib/python3/dist-packages/pymatgen/core/lattice.py:21: in 203s from pymatgen.util.coord import pbc_shortest_vectors 203s /usr/lib/python3/dist-packages/pymatgen/util/coord.py:15: in 203s from pymatgen.util import coord_cython 203s E ImportError: cannot import name 'coord_cython' from 'pymatgen.util' (/usr/lib/python3/dist-packages/pymatgen/util/__init__.py) 203s ____________________ ERROR collecting tests/vasp/test_io.py ____________________ 203s ImportError while importing test module '/tmp/autopkgtest.DKtR6J/autopkgtest_tmp/runtests/tests/vasp/test_io.py'. 203s Hint: make sure your test modules/packages have valid Python names. 203s Traceback: 203s /usr/lib/python3.14/importlib/__init__.py:88: in import_module 203s return _bootstrap._gcd_import(name[level:], package, level) 203s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 203s tests/vasp/test_io.py:5: in 203s from custodian.vasp.io import load_outcar, load_vasprun 203s /usr/lib/python3/dist-packages/custodian/vasp/io.py:3: in 203s from pymatgen.io.vasp.outputs import Outcar, Vasprun 203s /usr/lib/python3/dist-packages/pymatgen/io/vasp/__init__.py:10: in 203s from .inputs import Incar, Kpoints, Poscar, Potcar, PotcarSingle, VaspInput 203s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:35: in 203s from pymatgen.core import SETTINGS, Element, Lattice, Structure, get_el_sp 203s /usr/lib/python3/dist-packages/pymatgen/core/__init__.py:13: in 203s from pymatgen.core.lattice import Lattice 203s /usr/lib/python3/dist-packages/pymatgen/core/lattice.py:21: in 203s from pymatgen.util.coord import pbc_shortest_vectors 203s /usr/lib/python3/dist-packages/pymatgen/util/coord.py:15: in 203s from pymatgen.util import coord_cython 203s E ImportError: cannot import name 'coord_cython' from 'pymatgen.util' (/usr/lib/python3/dist-packages/pymatgen/util/__init__.py) 203s ___________________ ERROR collecting tests/vasp/test_jobs.py ___________________ 203s ImportError while importing test module '/tmp/autopkgtest.DKtR6J/autopkgtest_tmp/runtests/tests/vasp/test_jobs.py'. 203s Hint: make sure your test modules/packages have valid Python names. 203s Traceback: 203s /usr/lib/python3.14/importlib/__init__.py:88: in import_module 203s return _bootstrap._gcd_import(name[level:], package, level) 203s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 203s tests/vasp/test_jobs.py:10: in 203s from pymatgen.io.vasp import Incar, Kpoints, Poscar 203s /usr/lib/python3/dist-packages/pymatgen/io/vasp/__init__.py:10: in 203s from .inputs import Incar, Kpoints, Poscar, Potcar, PotcarSingle, VaspInput 203s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:35: in 203s from pymatgen.core import SETTINGS, Element, Lattice, Structure, get_el_sp 203s /usr/lib/python3/dist-packages/pymatgen/core/__init__.py:13: in 203s from pymatgen.core.lattice import Lattice 203s /usr/lib/python3/dist-packages/pymatgen/core/lattice.py:21: in 203s from pymatgen.util.coord import pbc_shortest_vectors 203s /usr/lib/python3/dist-packages/pymatgen/util/coord.py:15: in 203s from pymatgen.util import coord_cython 203s E ImportError: cannot import name 'coord_cython' from 'pymatgen.util' (/usr/lib/python3/dist-packages/pymatgen/util/__init__.py) 203s __________________ ERROR collecting tests/vasp/test_utils.py ___________________ 203s ImportError while importing test module '/tmp/autopkgtest.DKtR6J/autopkgtest_tmp/runtests/tests/vasp/test_utils.py'. 203s Hint: make sure your test modules/packages have valid Python names. 203s Traceback: 203s /usr/lib/python3.14/importlib/__init__.py:88: in import_module 203s return _bootstrap._gcd_import(name[level:], package, level) 203s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 203s tests/vasp/test_utils.py:8: in 203s from pymatgen.core import Lattice, Structure 203s /usr/lib/python3/dist-packages/pymatgen/core/__init__.py:13: in 203s from pymatgen.core.lattice import Lattice 203s /usr/lib/python3/dist-packages/pymatgen/core/lattice.py:21: in 203s from pymatgen.util.coord import pbc_shortest_vectors 203s /usr/lib/python3/dist-packages/pymatgen/util/coord.py:15: in 203s from pymatgen.util import coord_cython 203s E ImportError: cannot import name 'coord_cython' from 'pymatgen.util' (/usr/lib/python3/dist-packages/pymatgen/util/__init__.py) 203s ________________ ERROR collecting tests/vasp/test_validators.py ________________ 203s ImportError while importing test module '/tmp/autopkgtest.DKtR6J/autopkgtest_tmp/runtests/tests/vasp/test_validators.py'. 203s Hint: make sure your test modules/packages have valid Python names. 203s Traceback: 203s /usr/lib/python3.14/importlib/__init__.py:88: in import_module 203s return _bootstrap._gcd_import(name[level:], package, level) 203s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 203s tests/vasp/test_validators.py:6: in 203s from custodian.vasp.validators import VaspAECCARValidator, VaspFilesValidator, VaspNpTMDValidator, VasprunXMLValidator 203s /usr/lib/python3/dist-packages/custodian/vasp/validators.py:9: in 203s from pymatgen.io.vasp import Chgcar, Incar 203s /usr/lib/python3/dist-packages/pymatgen/io/vasp/__init__.py:10: in 203s from .inputs import Incar, Kpoints, Poscar, Potcar, PotcarSingle, VaspInput 203s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:35: in 203s from pymatgen.core import SETTINGS, Element, Lattice, Structure, get_el_sp 203s /usr/lib/python3/dist-packages/pymatgen/core/__init__.py:13: in 203s from pymatgen.core.lattice import Lattice 203s /usr/lib/python3/dist-packages/pymatgen/core/lattice.py:21: in 203s from pymatgen.util.coord import pbc_shortest_vectors 203s /usr/lib/python3/dist-packages/pymatgen/util/coord.py:15: in 203s from pymatgen.util import coord_cython 203s E ImportError: cannot import name 'coord_cython' from 'pymatgen.util' (/usr/lib/python3/dist-packages/pymatgen/util/__init__.py) 203s =========================== short test summary info ============================ 203s ERROR tests/cp2k/test_handlers.py 203s ERROR tests/cp2k/test_jobs.py 203s ERROR tests/feff/test_handlers.py 203s ERROR tests/feff/test_jobs.py 203s ERROR tests/gaussian/test_handlers.py 203s ERROR tests/gaussian/test_jobs.py 203s ERROR tests/lobster/test_handlers.py 203s ERROR tests/nwchem/test_handlers.py 203s ERROR tests/vasp/test_handlers.py 203s ERROR tests/vasp/test_io.py 203s ERROR tests/vasp/test_jobs.py 203s ERROR tests/vasp/test_utils.py 203s ERROR tests/vasp/test_validators.py 203s !!!!!!!!!!!!!!!!!!! Interrupted: 13 errors during collection !!!!!!!!!!!!!!!!!!! 203s ======================== 3 skipped, 13 errors in 2.47s ========================= 204s autopkgtest [05:35:51]: test test-custodian: -----------------------] 204s autopkgtest [05:35:51]: test test-custodian: - - - - - - - - - - results - - - - - - - - - - 204s test-custodian FAIL non-zero exit status 2 205s autopkgtest [05:35:52]: @@@@@@@@@@@@@@@@@@@@ summary 205s test-custodian FAIL non-zero exit status 2