0s autopkgtest [00:29:04]: starting date and time: 2025-10-20 00:29:04+0000 0s autopkgtest [00:29:04]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [00:29:04]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.539vu27a/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:node-jquery --apt-upgrade bamtools --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=node-jquery/3.7.1+dfsg+~3.5.33-1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-arm64-13.secgroup --name adt-resolute-arm64-bamtools-20251020-002904-juju-7f2275-prod-proposed-migration-environment-15-7403378d-2733-42dd-b057-ce6acf1e3045 --image adt/ubuntu-resolute-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 4s Creating nova instance adt-resolute-arm64-bamtools-20251020-002904-juju-7f2275-prod-proposed-migration-environment-15-7403378d-2733-42dd-b057-ce6acf1e3045 from image adt/ubuntu-resolute-arm64-server-20251019.img (UUID 66624775-bb7d-402f-bbba-489c1d649d18)... 98s autopkgtest [00:30:42]: testbed dpkg architecture: arm64 98s autopkgtest [00:30:42]: testbed apt version: 3.1.8ubuntu1 99s autopkgtest [00:30:43]: @@@@@@@@@@@@@@@@@@@@ test bed setup 99s autopkgtest [00:30:43]: testbed release detected to be: None 100s autopkgtest [00:30:44]: updating testbed package index (apt update) 100s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [83.3 kB] 101s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 101s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 101s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 101s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [396 kB] 101s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [47.8 kB] 101s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [5028 B] 101s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [15.8 kB] 101s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 Packages [110 kB] 101s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/restricted arm64 Packages [43.8 kB] 101s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/universe arm64 Packages [274 kB] 101s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse arm64 Packages [8020 B] 101s Fetched 984 kB in 1s (933 kB/s) 103s Reading package lists... 104s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 104s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 104s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 104s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 106s Reading package lists... 106s Reading package lists... 106s Building dependency tree... 106s Reading state information... 106s Calculating upgrade... 107s The following packages will be upgraded: 107s distro-info-data dpkg dpkg-dev libaudit-common libaudit1 libdpkg-perl 107s libp11-kit0 libseccomp2 python-apt-common python3-apt 107s 10 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 107s Need to get 3273 kB of archives. 107s After this operation, 503 kB of additional disk space will be used. 107s Get:1 http://ftpmaster.internal/ubuntu resolute/main arm64 dpkg arm64 1.22.21ubuntu4 [1274 kB] 108s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 libaudit-common all 1:4.0.5-1build2 [6596 B] 108s Get:3 http://ftpmaster.internal/ubuntu resolute/main arm64 libaudit1 arm64 1:4.0.5-1build2 [58.6 kB] 108s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 distro-info-data all 0.68 [7378 B] 108s Get:5 http://ftpmaster.internal/ubuntu resolute/main arm64 libp11-kit0 arm64 0.25.9-2 [283 kB] 108s Get:6 http://ftpmaster.internal/ubuntu resolute/main arm64 libseccomp2 arm64 2.6.0-2ubuntu3 [56.1 kB] 108s Get:7 http://ftpmaster.internal/ubuntu resolute/main arm64 python-apt-common all 3.0.0ubuntu2 [21.7 kB] 108s Get:8 http://ftpmaster.internal/ubuntu resolute/main arm64 python3-apt arm64 3.0.0ubuntu2 [197 kB] 108s Get:9 http://ftpmaster.internal/ubuntu resolute/main arm64 dpkg-dev all 1.22.21ubuntu4 [1088 kB] 108s Get:10 http://ftpmaster.internal/ubuntu resolute/main arm64 libdpkg-perl all 1.22.21ubuntu4 [280 kB] 109s dpkg-preconfigure: unable to re-open stdin: No such file or directory 109s Fetched 3273 kB in 1s (2904 kB/s) 110s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83359 files and directories currently installed.) 110s Preparing to unpack .../dpkg_1.22.21ubuntu4_arm64.deb ... 110s Unpacking dpkg (1.22.21ubuntu4) over (1.22.21ubuntu3) ... 110s Setting up dpkg (1.22.21ubuntu4) ... 111s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83359 files and directories currently installed.) 111s Preparing to unpack .../libaudit-common_1%3a4.0.5-1build2_all.deb ... 111s Unpacking libaudit-common (1:4.0.5-1build2) over (1:4.0.5-1build1) ... 111s Setting up libaudit-common (1:4.0.5-1build2) ... 112s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83359 files and directories currently installed.) 112s Preparing to unpack .../libaudit1_1%3a4.0.5-1build2_arm64.deb ... 112s Unpacking libaudit1:arm64 (1:4.0.5-1build2) over (1:4.0.5-1build1) ... 112s Setting up libaudit1:arm64 (1:4.0.5-1build2) ... 112s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83359 files and directories currently installed.) 112s Preparing to unpack .../0-distro-info-data_0.68_all.deb ... 112s Unpacking distro-info-data (0.68) over (0.67~ubuntu1) ... 112s Preparing to unpack .../1-libp11-kit0_0.25.9-2_arm64.deb ... 112s Unpacking libp11-kit0:arm64 (0.25.9-2) over (0.25.5-3ubuntu1) ... 113s Preparing to unpack .../2-libseccomp2_2.6.0-2ubuntu3_arm64.deb ... 113s Unpacking libseccomp2:arm64 (2.6.0-2ubuntu3) over (2.6.0-2ubuntu2) ... 113s Preparing to unpack .../3-python-apt-common_3.0.0ubuntu2_all.deb ... 113s Unpacking python-apt-common (3.0.0ubuntu2) over (3.0.0ubuntu1) ... 113s Preparing to unpack .../4-python3-apt_3.0.0ubuntu2_arm64.deb ... 113s Unpacking python3-apt (3.0.0ubuntu2) over (3.0.0ubuntu1) ... 114s Preparing to unpack .../5-dpkg-dev_1.22.21ubuntu4_all.deb ... 114s Unpacking dpkg-dev (1.22.21ubuntu4) over (1.22.21ubuntu3) ... 114s Preparing to unpack .../6-libdpkg-perl_1.22.21ubuntu4_all.deb ... 114s Unpacking libdpkg-perl (1.22.21ubuntu4) over (1.22.21ubuntu3) ... 114s Setting up distro-info-data (0.68) ... 114s Setting up libseccomp2:arm64 (2.6.0-2ubuntu3) ... 114s Setting up libp11-kit0:arm64 (0.25.9-2) ... 114s Setting up libdpkg-perl (1.22.21ubuntu4) ... 114s Setting up python-apt-common (3.0.0ubuntu2) ... 114s Setting up python3-apt (3.0.0ubuntu2) ... 115s Setting up dpkg-dev (1.22.21ubuntu4) ... 115s Processing triggers for man-db (2.13.1-1) ... 119s Processing triggers for libc-bin (2.42-0ubuntu3) ... 119s autopkgtest [00:31:03]: upgrading testbed (apt dist-upgrade and autopurge) 120s Reading package lists... 120s Building dependency tree... 120s Reading state information... 120s Calculating upgrade... 121s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 121s Reading package lists... 122s Building dependency tree... 122s Reading state information... 122s Solving dependencies... 122s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 123s autopkgtest [00:31:07]: rebooting testbed after setup commands that affected boot 168s autopkgtest [00:31:52]: testbed running kernel: Linux 6.17.0-5-generic #5-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 22 09:50:31 UTC 2025 172s autopkgtest [00:31:56]: @@@@@@@@@@@@@@@@@@@@ apt-source bamtools 176s Get:1 http://ftpmaster.internal/ubuntu resolute/universe bamtools 2.5.2+dfsg-6build1 (dsc) [2386 B] 176s Get:2 http://ftpmaster.internal/ubuntu resolute/universe bamtools 2.5.2+dfsg-6build1 (tar) [156 kB] 176s Get:3 http://ftpmaster.internal/ubuntu resolute/universe bamtools 2.5.2+dfsg-6build1 (diff) [11.4 kB] 177s gpgv: Signature made Sat Nov 9 12:15:34 2024 UTC 177s gpgv: using RSA key B8340990283D8D9BC1949AC74799A35146D12B35 177s gpgv: Can't check signature: No public key 177s dpkg-source: warning: cannot verify inline signature for ./bamtools_2.5.2+dfsg-6build1.dsc: no acceptable signature found 177s autopkgtest [00:32:01]: testing package bamtools version 2.5.2+dfsg-6build1 178s autopkgtest [00:32:02]: build not needed 179s autopkgtest [00:32:03]: test run-unit-test: preparing testbed 179s Reading package lists... 180s Building dependency tree... 180s Reading state information... 180s Solving dependencies... 181s The following NEW packages will be installed: 181s bamtools libbamtools-dev libbamtools-doc libbamtools2.5.2 libjs-jquery 181s libjsoncpp26 zlib1g-dev 181s 0 upgraded, 7 newly installed, 0 to remove and 0 not upgraded. 181s Need to get 1989 kB of archives. 181s After this operation, 7593 kB of additional disk space will be used. 181s Get:1 http://ftpmaster.internal/ubuntu resolute/universe arm64 libbamtools2.5.2 arm64 2.5.2+dfsg-6build1 [132 kB] 181s Get:2 http://ftpmaster.internal/ubuntu resolute/main arm64 libjsoncpp26 arm64 1.9.6-3 [78.7 kB] 181s Get:3 http://ftpmaster.internal/ubuntu resolute/universe arm64 bamtools arm64 2.5.2+dfsg-6build1 [159 kB] 181s Get:4 http://ftpmaster.internal/ubuntu resolute/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu2 [899 kB] 182s Get:5 http://ftpmaster.internal/ubuntu resolute/universe arm64 libbamtools-dev arm64 2.5.2+dfsg-6build1 [240 kB] 182s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/main arm64 libjs-jquery all 3.7.1+dfsg+~3.5.33-1build1 [321 kB] 182s Get:7 http://ftpmaster.internal/ubuntu resolute/universe arm64 libbamtools-doc all 2.5.2+dfsg-6build1 [159 kB] 183s Fetched 1989 kB in 1s (1616 kB/s) 183s Selecting previously unselected package libbamtools2.5.2:arm64. 183s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83363 files and directories currently installed.) 183s Preparing to unpack .../0-libbamtools2.5.2_2.5.2+dfsg-6build1_arm64.deb ... 183s Unpacking libbamtools2.5.2:arm64 (2.5.2+dfsg-6build1) ... 183s Selecting previously unselected package libjsoncpp26:arm64. 183s Preparing to unpack .../1-libjsoncpp26_1.9.6-3_arm64.deb ... 183s Unpacking libjsoncpp26:arm64 (1.9.6-3) ... 184s Selecting previously unselected package bamtools. 184s Preparing to unpack .../2-bamtools_2.5.2+dfsg-6build1_arm64.deb ... 184s Unpacking bamtools (2.5.2+dfsg-6build1) ... 184s Selecting previously unselected package zlib1g-dev:arm64. 184s Preparing to unpack .../3-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu2_arm64.deb ... 184s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu2) ... 184s Selecting previously unselected package libbamtools-dev:arm64. 184s Preparing to unpack .../4-libbamtools-dev_2.5.2+dfsg-6build1_arm64.deb ... 184s Unpacking libbamtools-dev:arm64 (2.5.2+dfsg-6build1) ... 184s Selecting previously unselected package libjs-jquery. 184s Preparing to unpack .../5-libjs-jquery_3.7.1+dfsg+~3.5.33-1build1_all.deb ... 184s Unpacking libjs-jquery (3.7.1+dfsg+~3.5.33-1build1) ... 184s Selecting previously unselected package libbamtools-doc. 184s Preparing to unpack .../6-libbamtools-doc_2.5.2+dfsg-6build1_all.deb ... 184s Unpacking libbamtools-doc (2.5.2+dfsg-6build1) ... 184s Setting up libjsoncpp26:arm64 (1.9.6-3) ... 184s Setting up libbamtools2.5.2:arm64 (2.5.2+dfsg-6build1) ... 184s Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu2) ... 184s Setting up bamtools (2.5.2+dfsg-6build1) ... 184s Setting up libjs-jquery (3.7.1+dfsg+~3.5.33-1build1) ... 184s Setting up libbamtools-dev:arm64 (2.5.2+dfsg-6build1) ... 184s Setting up libbamtools-doc (2.5.2+dfsg-6build1) ... 184s Processing triggers for man-db (2.13.1-1) ... 186s Processing triggers for libc-bin (2.42-0ubuntu3) ... 188s autopkgtest [00:32:12]: test run-unit-test: [----------------------- 189s 6 189s @HD VN:1.5 SO:coordinate 189s @SQ SN:ref LN:45 189s 189s 189s ********************************************** 189s Stats for BAM file(s): 189s ********************************************** 189s 189s Total reads: 6 189s Mapped reads: 6 (100%) 189s Forward strand: 4 (66.6667%) 189s Reverse strand: 2 (33.3333%) 189s Failed QC: 0 (0%) 189s Duplicates: 0 (0%) 189s Paired-end reads: 2 (33.3333%) 189s 'Proper-pairs': 2 (100%) 189s Both pairs mapped: 2 (100%) 189s Read 1: 1 189s Read 2: 1 189s Singletons: 0 (0%) 189s 189s autopkgtest [00:32:13]: test run-unit-test: -----------------------] 190s autopkgtest [00:32:14]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 190s run-unit-test PASS 190s autopkgtest [00:32:14]: @@@@@@@@@@@@@@@@@@@@ summary 190s run-unit-test PASS