0s autopkgtest [22:09:49]: starting date and time: 2026-02-06 22:09:49+0000 0s autopkgtest [22:09:49]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [22:09:49]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.ja2m5u5p/out --timeout-copy=6000 --needs-internet=try --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade transtermhp --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.42-2ubuntu5 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-amd64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@sto01-20.secgroup --name adt-resolute-amd64-transtermhp-20260206-220949-juju-7f2275-prod-proposed-migration-environment-2-3e0d0e4e-7e27-450c-b464-8c80575c2875 --image adt/ubuntu-resolute-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-autopkgtest-workers-amd64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 3s Creating nova instance adt-resolute-amd64-transtermhp-20260206-220949-juju-7f2275-prod-proposed-migration-environment-2-3e0d0e4e-7e27-450c-b464-8c80575c2875 from image adt/ubuntu-resolute-amd64-server-20260204.img (UUID fedf54b4-458b-493e-8072-6425c19717b4)... 87s autopkgtest [22:11:16]: testbed dpkg architecture: amd64 87s autopkgtest [22:11:16]: testbed apt version: 3.1.14 87s autopkgtest [22:11:16]: @@@@@@@@@@@@@@@@@@@@ test bed setup 87s autopkgtest [22:11:16]: testbed release detected to be: None 88s autopkgtest [22:11:17]: updating testbed package index (apt update) 88s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 88s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 88s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 88s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 88s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [32.7 kB] 88s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [10.7 kB] 88s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [201 kB] 88s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1547 kB] 88s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 Packages [266 kB] 88s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main i386 Packages [189 kB] 88s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 c-n-f Metadata [6500 B] 88s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 Packages [80.4 kB] 88s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/restricted i386 Packages [3692 B] 88s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 c-n-f Metadata [336 B] 88s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 Packages [1433 kB] 88s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/universe i386 Packages [550 kB] 89s Get:17 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 c-n-f Metadata [36.8 kB] 89s Get:18 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 Packages [28.2 kB] 89s Get:19 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse i386 Packages [4892 B] 89s Get:20 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 c-n-f Metadata [1104 B] 89s Fetched 4516 kB in 1s (6276 kB/s) 90s Reading package lists... 90s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 90s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 90s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 90s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 91s Reading package lists... 91s Reading package lists... 91s Building dependency tree... 91s Reading state information... 91s Calculating upgrade... 92s The following packages will be upgraded: 92s amd64-microcode apt busybox-initramfs busybox-static dmsetup findutils less 92s libapt-pkg7.0 libattr1 libc-bin libc-gconv-modules-extra libc6 92s libdevmapper1.02.1 libdrm-amdgpu1 libdrm-common libdrm2 libgpm2 libkeyutils1 92s libmaxminddb0 libnpth0t64 libsensors-config libsensors5 locales mawk patch 92s pollinate python3-linkify-it python3-markdown-it python3-referencing sed tar 92s 31 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 92s Need to get 14.4 MB of archives. 92s After this operation, 270 kB disk space will be freed. 92s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 findutils amd64 4.10.0-3build2 [307 kB] 92s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 sed amd64 4.9-2build3 [195 kB] 92s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 tar amd64 1.35+dfsg-3.1build2 [257 kB] 92s Get:4 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libc-gconv-modules-extra amd64 2.42-2ubuntu5 [1394 kB] 92s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libc6 amd64 2.42-2ubuntu5 [2041 kB] 92s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libc-bin amd64 2.42-2ubuntu5 [702 kB] 92s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 libattr1 amd64 1:2.5.2-3build2 [11.4 kB] 92s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 mawk amd64 1.3.4.20260129-1 [133 kB] 92s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 libapt-pkg7.0 amd64 3.1.15 [1151 kB] 92s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 apt amd64 3.1.15 [1479 kB] 92s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 libdevmapper1.02.1 amd64 2:1.02.205-2ubuntu3 [142 kB] 92s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 dmsetup amd64 2:1.02.205-2ubuntu3 [79.4 kB] 92s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 less amd64 668-1build1 [172 kB] 92s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 libkeyutils1 amd64 1.6.3-6ubuntu3 [10.6 kB] 92s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 locales all 2.42-2ubuntu5 [4255 kB] 92s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-linkify-it all 2.0.3-1ubuntu3 [19.4 kB] 92s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-markdown-it all 3.0.0-3build1 [54.4 kB] 92s Get:18 http://ftpmaster.internal/ubuntu resolute/main amd64 busybox-static amd64 1:1.37.0-7ubuntu1 [1034 kB] 92s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm-common all 2.4.131-1 [9774 B] 92s Get:20 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm2 amd64 2.4.131-1 [42.3 kB] 92s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 libgpm2 amd64 1.20.7-12build1 [14.4 kB] 92s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 libmaxminddb0 amd64 1.12.2-1build2 [18.9 kB] 92s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 libsensors-config all 1:3.6.2-2build1 [6862 B] 92s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 libsensors5 amd64 1:3.6.2-2build1 [28.9 kB] 92s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 busybox-initramfs amd64 1:1.37.0-7ubuntu1 [191 kB] 92s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm-amdgpu1 amd64 2.4.131-1 [23.2 kB] 92s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 libnpth0t64 amd64 1.8-3build1 [9302 B] 92s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 patch amd64 2.8-2build1 [95.7 kB] 92s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 pollinate all 4.33-4ubuntu5 [14.0 kB] 92s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-referencing all 0.36.2-1ubuntu2 [22.2 kB] 92s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 amd64-microcode amd64 3.20251202.1ubuntu1 [459 kB] 93s dpkg-preconfigure: unable to re-open stdin: No such file or directory 93s Fetched 14.4 MB in 1s (18.6 MB/s) 93s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 93s Preparing to unpack .../findutils_4.10.0-3build2_amd64.deb ... 93s Unpacking findutils (4.10.0-3build2) over (4.10.0-3build1) ... 93s Setting up findutils (4.10.0-3build2) ... 93s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 93s Preparing to unpack .../sed_4.9-2build3_amd64.deb ... 93s Unpacking sed (4.9-2build3) over (4.9-2build2) ... 93s Setting up sed (4.9-2build3) ... 93s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 93s Preparing to unpack .../tar_1.35+dfsg-3.1build2_amd64.deb ... 93s Unpacking tar (1.35+dfsg-3.1build2) over (1.35+dfsg-3.1build1) ... 93s Setting up tar (1.35+dfsg-3.1build2) ... 93s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 93s Preparing to unpack .../libc-gconv-modules-extra_2.42-2ubuntu5_amd64.deb ... 93s Unpacking libc-gconv-modules-extra:amd64 (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 93s Setting up libc-gconv-modules-extra:amd64 (2.42-2ubuntu5) ... 93s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 93s Preparing to unpack .../libc6_2.42-2ubuntu5_amd64.deb ... 93s Unpacking libc6:amd64 (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 93s Setting up libc6:amd64 (2.42-2ubuntu5) ... 93s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 93s Preparing to unpack .../libc-bin_2.42-2ubuntu5_amd64.deb ... 93s Unpacking libc-bin (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 93s Setting up libc-bin (2.42-2ubuntu5) ... 94s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 94s Preparing to unpack .../libattr1_1%3a2.5.2-3build2_amd64.deb ... 94s Unpacking libattr1:amd64 (1:2.5.2-3build2) over (1:2.5.2-3build1) ... 94s Setting up libattr1:amd64 (1:2.5.2-3build2) ... 94s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 94s Preparing to unpack .../00-mawk_1.3.4.20260129-1_amd64.deb ... 94s Unpacking mawk (1.3.4.20260129-1) over (1.3.4.20250131-2) ... 94s Preparing to unpack .../01-libapt-pkg7.0_3.1.15_amd64.deb ... 94s Unpacking libapt-pkg7.0:amd64 (3.1.15) over (3.1.14) ... 94s Preparing to unpack .../02-apt_3.1.15_amd64.deb ... 94s Unpacking apt (3.1.15) over (3.1.14) ... 94s Preparing to unpack .../03-libdevmapper1.02.1_2%3a1.02.205-2ubuntu3_amd64.deb ... 94s Unpacking libdevmapper1.02.1:amd64 (2:1.02.205-2ubuntu3) over (2:1.02.205-2ubuntu2) ... 94s Preparing to unpack .../04-dmsetup_2%3a1.02.205-2ubuntu3_amd64.deb ... 94s Unpacking dmsetup (2:1.02.205-2ubuntu3) over (2:1.02.205-2ubuntu2) ... 94s Preparing to unpack .../05-less_668-1build1_amd64.deb ... 94s Unpacking less (668-1build1) over (668-1) ... 94s Preparing to unpack .../06-libkeyutils1_1.6.3-6ubuntu3_amd64.deb ... 94s Unpacking libkeyutils1:amd64 (1.6.3-6ubuntu3) over (1.6.3-6ubuntu2) ... 94s Preparing to unpack .../07-locales_2.42-2ubuntu5_all.deb ... 94s Unpacking locales (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 94s Preparing to unpack .../08-python3-linkify-it_2.0.3-1ubuntu3_all.deb ... 94s Unpacking python3-linkify-it (2.0.3-1ubuntu3) over (2.0.3-1ubuntu2) ... 94s Preparing to unpack .../09-python3-markdown-it_3.0.0-3build1_all.deb ... 94s Unpacking python3-markdown-it (3.0.0-3build1) over (3.0.0-3) ... 94s Preparing to unpack .../10-busybox-static_1%3a1.37.0-7ubuntu1_amd64.deb ... 94s Unpacking busybox-static (1:1.37.0-7ubuntu1) over (1:1.37.0-4ubuntu1) ... 94s Preparing to unpack .../11-libdrm-common_2.4.131-1_all.deb ... 94s Unpacking libdrm-common (2.4.131-1) over (2.4.129-1) ... 94s Preparing to unpack .../12-libdrm2_2.4.131-1_amd64.deb ... 94s Unpacking libdrm2:amd64 (2.4.131-1) over (2.4.129-1) ... 94s Preparing to unpack .../13-libgpm2_1.20.7-12build1_amd64.deb ... 94s Unpacking libgpm2:amd64 (1.20.7-12build1) over (1.20.7-12) ... 94s Preparing to unpack .../14-libmaxminddb0_1.12.2-1build2_amd64.deb ... 94s Unpacking libmaxminddb0:amd64 (1.12.2-1build2) over (1.12.2-1build1) ... 94s Preparing to unpack .../15-libsensors-config_1%3a3.6.2-2build1_all.deb ... 94s Unpacking libsensors-config (1:3.6.2-2build1) over (1:3.6.2-2) ... 94s Preparing to unpack .../16-libsensors5_1%3a3.6.2-2build1_amd64.deb ... 94s Unpacking libsensors5:amd64 (1:3.6.2-2build1) over (1:3.6.2-2) ... 95s Preparing to unpack .../17-busybox-initramfs_1%3a1.37.0-7ubuntu1_amd64.deb ... 95s Unpacking busybox-initramfs (1:1.37.0-7ubuntu1) over (1:1.37.0-4ubuntu1) ... 95s Preparing to unpack .../18-libdrm-amdgpu1_2.4.131-1_amd64.deb ... 95s Unpacking libdrm-amdgpu1:amd64 (2.4.131-1) over (2.4.129-1) ... 95s Preparing to unpack .../19-libnpth0t64_1.8-3build1_amd64.deb ... 95s Unpacking libnpth0t64:amd64 (1.8-3build1) over (1.8-3) ... 95s Preparing to unpack .../20-patch_2.8-2build1_amd64.deb ... 95s Unpacking patch (2.8-2build1) over (2.8-2) ... 95s Preparing to unpack .../21-pollinate_4.33-4ubuntu5_all.deb ... 95s Unpacking pollinate (4.33-4ubuntu5) over (4.33-4ubuntu4) ... 95s Preparing to unpack .../22-python3-referencing_0.36.2-1ubuntu2_all.deb ... 95s Unpacking python3-referencing (0.36.2-1ubuntu2) over (0.36.2-1ubuntu1) ... 95s Preparing to unpack .../23-amd64-microcode_3.20251202.1ubuntu1_amd64.deb ... 95s Unpacking amd64-microcode (3.20251202.1ubuntu1) over (3.20250708.1ubuntu1) ... 95s Setting up libnpth0t64:amd64 (1.8-3build1) ... 95s Setting up libkeyutils1:amd64 (1.6.3-6ubuntu3) ... 95s Setting up libgpm2:amd64 (1.20.7-12build1) ... 95s Setting up libmaxminddb0:amd64 (1.12.2-1build2) ... 95s Setting up libsensors-config (1:3.6.2-2build1) ... 95s Setting up less (668-1build1) ... 95s Setting up amd64-microcode (3.20251202.1ubuntu1) ... 95s amd64-microcode: microcode will be updated at next boot 95s Setting up locales (2.42-2ubuntu5) ... 95s Generating locales (this might take a while)... 96s en_US.UTF-8... done 96s Generation complete. 96s Setting up pollinate (4.33-4ubuntu5) ... 107s Setting up busybox-static (1:1.37.0-7ubuntu1) ... 107s Setting up patch (2.8-2build1) ... 107s Setting up libsensors5:amd64 (1:3.6.2-2build1) ... 107s Setting up busybox-initramfs (1:1.37.0-7ubuntu1) ... 107s Setting up libdevmapper1.02.1:amd64 (2:1.02.205-2ubuntu3) ... 107s Setting up dmsetup (2:1.02.205-2ubuntu3) ... 107s Setting up python3-linkify-it (2.0.3-1ubuntu3) ... 107s Setting up mawk (1.3.4.20260129-1) ... 107s Setting up libapt-pkg7.0:amd64 (3.1.15) ... 107s Setting up libdrm-common (2.4.131-1) ... 107s Setting up python3-referencing (0.36.2-1ubuntu2) ... 107s Setting up apt (3.1.15) ... 107s Setting up python3-markdown-it (3.0.0-3build1) ... 107s Setting up libdrm2:amd64 (2.4.131-1) ... 107s Setting up libdrm-amdgpu1:amd64 (2.4.131-1) ... 107s Processing triggers for libc-bin (2.42-2ubuntu5) ... 107s Processing triggers for systemd (259-1ubuntu3) ... 108s Processing triggers for man-db (2.13.1-1) ... 109s Processing triggers for install-info (7.2-5) ... 109s Processing triggers for initramfs-tools (0.150ubuntu7) ... 109s update-initramfs: Generating /boot/initrd.img-6.18.0-9-generic 114s autopkgtest [22:11:43]: upgrading testbed (apt dist-upgrade and autopurge) 114s Reading package lists... 114s Building dependency tree... 114s Reading state information... 115s Calculating upgrade... 115s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 115s Reading package lists... 115s Building dependency tree... 115s Reading state information... 115s Solving dependencies... 115s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 115s autopkgtest [22:11:44]: rebooting testbed after setup commands that affected boot 144s autopkgtest [22:12:13]: testbed running kernel: Linux 6.18.0-9-generic #9-Ubuntu SMP PREEMPT_DYNAMIC Mon Jan 12 16:49:02 UTC 2026 146s autopkgtest [22:12:15]: @@@@@@@@@@@@@@@@@@@@ apt-source transtermhp 147s Get:1 http://ftpmaster.internal/ubuntu resolute/universe transtermhp 2.09-5build1 (dsc) [2094 B] 147s Get:2 http://ftpmaster.internal/ubuntu resolute/universe transtermhp 2.09-5build1 (tar) [71.3 kB] 147s Get:3 http://ftpmaster.internal/ubuntu resolute/universe transtermhp 2.09-5build1 (diff) [16.0 kB] 147s gpgv: Signature made Tue Dec 2 22:01:13 2025 UTC 147s gpgv: using RSA key 92FE4F8B40CADC4ECCD60C1F5961FDBE9C619809 147s gpgv: Can't check signature: No public key 147s dpkg-source: warning: cannot verify inline signature for ./transtermhp_2.09-5build1.dsc: no acceptable signature found 147s autopkgtest [22:12:16]: testing package transtermhp version 2.09-5build1 148s autopkgtest [22:12:17]: build not needed 148s autopkgtest [22:12:17]: test run-unit-test: preparing testbed 148s Reading package lists... 148s Building dependency tree... 148s Reading state information... 148s Solving dependencies... 148s The following NEW packages will be installed: 148s transtermhp 148s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 148s Need to get 118 kB of archives. 148s After this operation, 387 kB of additional disk space will be used. 148s Get:1 http://ftpmaster.internal/ubuntu resolute/universe amd64 transtermhp amd64 2.09-5build1 [118 kB] 149s Fetched 118 kB in 0s (834 kB/s) 149s Selecting previously unselected package transtermhp. 149s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83962 files and directories currently installed.) 149s Preparing to unpack .../transtermhp_2.09-5build1_amd64.deb ... 149s Unpacking transtermhp (2.09-5build1) ... 149s Setting up transtermhp (2.09-5build1) ... 149s Processing triggers for man-db (2.13.1-1) ... 150s autopkgtest [22:12:19]: test run-unit-test: [----------------------- 150s calibrate.sh 150s expterm.dat 150s infile.fasta 150s make_expterm.py 150s mfold_rna.sh 150s random_fasta.py 150s Test 1 150s TransTerm Options = 150s NOTE: warnings about 'using version 1.0 confidence' are expected and OK. 150s TransTermHP v2.08 (built on Dec 2 2025) 150s WARNING: USING VERSION 1.0 CONFIDENCE. 150s (use -p expterm.dat to use v2.0 confidence) 150s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 150s 150s --gc=-2.3 --au=-0.9 --gu=1.3 --mm=3.5 --gap=6 150s --max-len=59 --min-stem=4 --max-loop=13 --min-loop=3 150s --uwin-length=6 --uwin-require=3 --max-hp-score=-2 --max-tail-score=-2.5 150s --loop-penalty=1,2,3,4,5,6,7,8,9,10,11 150s --start-cut=0 --end-cut=25 150s 150s 150s warning: no examples in genes; can't compute conf. 150s 150s Each terminator entry starts in column 3 and is of the form: 150s term # start - end +/- regionconf hp tail | notes 150s Followed by the sequence of the 5' tail, 5' stem, loop, 3' stem, and 3' tail. 150s Genes are interspersed, and start the first column. 150s 150s 150s Wall clock time = 0 seconds. 150s calibrate.sh: Running TransTerm on random sequence with %AT = 0.26 158s WARNING: USING VERSION 1.0 CONFIDENCE. 158s (use -p expterm.dat to use v2.0 confidence) 158s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 170s Seq: random (length 20000000, 14811 genes) 170s 171s Wall clock time = 12 seconds. 171s calibrate.sh: Running TransTerm on random sequence with %AT = 0.28 179s WARNING: USING VERSION 1.0 CONFIDENCE. 179s (use -p expterm.dat to use v2.0 confidence) 179s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 192s Seq: random (length 20000000, 14769 genes) 192s 193s Wall clock time = 14 seconds. 193s calibrate.sh: Running TransTerm on random sequence with %AT = 0.30 201s WARNING: USING VERSION 1.0 CONFIDENCE. 201s (use -p expterm.dat to use v2.0 confidence) 201s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 217s Seq: random (length 20000000, 14747 genes) 217s 217s Wall clock time = 16 seconds. 217s calibrate.sh: Running TransTerm on random sequence with %AT = 0.32 225s WARNING: USING VERSION 1.0 CONFIDENCE. 225s (use -p expterm.dat to use v2.0 confidence) 225s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 243s Seq: random (length 20000000, 14869 genes) 243s 243s Wall clock time = 17 seconds. 243s calibrate.sh: Running TransTerm on random sequence with %AT = 0.34 251s WARNING: USING VERSION 1.0 CONFIDENCE. 251s (use -p expterm.dat to use v2.0 confidence) 251s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 270s Seq: random (length 20000000, 14863 genes) 270s 271s Wall clock time = 19 seconds. 271s calibrate.sh: Running TransTerm on random sequence with %AT = 0.36 279s WARNING: USING VERSION 1.0 CONFIDENCE. 279s (use -p expterm.dat to use v2.0 confidence) 279s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 300s Seq: random (length 20000000, 14734 genes) 300s 301s Wall clock time = 22 seconds. 301s calibrate.sh: Running TransTerm on random sequence with %AT = 0.38 309s WARNING: USING VERSION 1.0 CONFIDENCE. 309s (use -p expterm.dat to use v2.0 confidence) 309s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 331s Seq: random (length 20000000, 14742 genes) 331s 332s Wall clock time = 23 seconds. 332s calibrate.sh: Running TransTerm on random sequence with %AT = 0.40 340s WARNING: USING VERSION 1.0 CONFIDENCE. 340s (use -p expterm.dat to use v2.0 confidence) 340s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 364s Seq: random (length 20000000, 14775 genes) 364s 364s Wall clock time = 24 seconds. 364s calibrate.sh: Running TransTerm on random sequence with %AT = 0.42 372s WARNING: USING VERSION 1.0 CONFIDENCE. 372s (use -p expterm.dat to use v2.0 confidence) 372s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 398s Seq: random (length 20000000, 14799 genes) 398s 398s Wall clock time = 25 seconds. 398s calibrate.sh: Running TransTerm on random sequence with %AT = 0.44 406s WARNING: USING VERSION 1.0 CONFIDENCE. 406s (use -p expterm.dat to use v2.0 confidence) 406s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 433s Seq: random (length 20000000, 14682 genes) 433s 433s Wall clock time = 28 seconds. 433s calibrate.sh: Running TransTerm on random sequence with %AT = 0.46 441s WARNING: USING VERSION 1.0 CONFIDENCE. 441s (use -p expterm.dat to use v2.0 confidence) 441s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 469s Seq: random (length 20000000, 14755 genes) 469s 470s Wall clock time = 28 seconds. 470s calibrate.sh: Running TransTerm on random sequence with %AT = 0.48 478s WARNING: USING VERSION 1.0 CONFIDENCE. 478s (use -p expterm.dat to use v2.0 confidence) 478s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 507s Seq: random (length 20000000, 14809 genes) 507s 507s Wall clock time = 30 seconds. 507s calibrate.sh: Running TransTerm on random sequence with %AT = 0.50 515s WARNING: USING VERSION 1.0 CONFIDENCE. 515s (use -p expterm.dat to use v2.0 confidence) 515s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 545s Seq: random (length 20000000, 14745 genes) 545s 546s Wall clock time = 30 seconds. 546s calibrate.sh: Running TransTerm on random sequence with %AT = 0.52 554s WARNING: USING VERSION 1.0 CONFIDENCE. 554s (use -p expterm.dat to use v2.0 confidence) 554s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 585s Seq: random (length 20000000, 14764 genes) 585s 585s Wall clock time = 32 seconds. 585s calibrate.sh: Running TransTerm on random sequence with %AT = 0.54 594s WARNING: USING VERSION 1.0 CONFIDENCE. 594s (use -p expterm.dat to use v2.0 confidence) 594s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 625s Seq: random (length 20000000, 14769 genes) 625s 626s Wall clock time = 32 seconds. 626s calibrate.sh: Running TransTerm on random sequence with %AT = 0.56 634s WARNING: USING VERSION 1.0 CONFIDENCE. 634s (use -p expterm.dat to use v2.0 confidence) 634s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 666s Seq: random (length 20000000, 14772 genes) 666s 667s Wall clock time = 33 seconds. 667s calibrate.sh: Running TransTerm on random sequence with %AT = 0.58 675s WARNING: USING VERSION 1.0 CONFIDENCE. 675s (use -p expterm.dat to use v2.0 confidence) 675s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 708s Seq: random (length 20000000, 14834 genes) 708s 708s Wall clock time = 33 seconds. 708s calibrate.sh: Running TransTerm on random sequence with %AT = 0.60 716s WARNING: USING VERSION 1.0 CONFIDENCE. 716s (use -p expterm.dat to use v2.0 confidence) 716s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 750s Seq: random (length 20000000, 14826 genes) 750s 751s Wall clock time = 34 seconds. 751s calibrate.sh: Running TransTerm on random sequence with %AT = 0.62 759s WARNING: USING VERSION 1.0 CONFIDENCE. 759s (use -p expterm.dat to use v2.0 confidence) 759s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 793s Seq: random (length 20000000, 14805 genes) 793s 793s Wall clock time = 35 seconds. 793s calibrate.sh: Running TransTerm on random sequence with %AT = 0.64 802s WARNING: USING VERSION 1.0 CONFIDENCE. 802s (use -p expterm.dat to use v2.0 confidence) 802s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 836s Seq: random (length 20000000, 14777 genes) 836s 836s Wall clock time = 35 seconds. 836s calibrate.sh: Running TransTerm on random sequence with %AT = 0.66 845s WARNING: USING VERSION 1.0 CONFIDENCE. 845s (use -p expterm.dat to use v2.0 confidence) 845s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 879s Seq: random (length 20000000, 14786 genes) 879s 880s Wall clock time = 35 seconds. 880s calibrate.sh: Running TransTerm on random sequence with %AT = 0.68 888s WARNING: USING VERSION 1.0 CONFIDENCE. 888s (use -p expterm.dat to use v2.0 confidence) 888s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 922s Seq: random (length 20000000, 14713 genes) 922s 923s Wall clock time = 35 seconds. 923s calibrate.sh: Running TransTerm on random sequence with %AT = 0.70 931s WARNING: USING VERSION 1.0 CONFIDENCE. 931s (use -p expterm.dat to use v2.0 confidence) 931s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 966s Seq: random (length 20000000, 14749 genes) 966s 966s Wall clock time = 35 seconds. 966s calibrate.sh: Running TransTerm on random sequence with %AT = 0.72 974s WARNING: USING VERSION 1.0 CONFIDENCE. 974s (use -p expterm.dat to use v2.0 confidence) 974s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 1009s Seq: random (length 20000000, 14859 genes) 1009s 1010s Wall clock time = 35 seconds. 1010s calibrate.sh: Running TransTerm on random sequence with %AT = 0.74 1018s WARNING: USING VERSION 1.0 CONFIDENCE. 1018s (use -p expterm.dat to use v2.0 confidence) 1018s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 1053s Seq: random (length 20000000, 14768 genes) 1053s 1053s Wall clock time = 36 seconds. 1053s calibrate.sh: Running TransTerm on random sequence with %AT = 0.76 1062s WARNING: USING VERSION 1.0 CONFIDENCE. 1062s (use -p expterm.dat to use v2.0 confidence) 1062s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 1097s Seq: random (length 20000000, 14766 genes) 1097s 1097s Wall clock time = 36 seconds. 1097s calibrate.sh: Running TransTerm on random sequence with %AT = 0.78 1106s WARNING: USING VERSION 1.0 CONFIDENCE. 1106s (use -p expterm.dat to use v2.0 confidence) 1106s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 1141s Seq: random (length 20000000, 14839 genes) 1141s 1141s Wall clock time = 35 seconds. 1141s calibrate.sh: Running TransTerm on random sequence with %AT = 0.80 1149s WARNING: USING VERSION 1.0 CONFIDENCE. 1149s (use -p expterm.dat to use v2.0 confidence) 1149s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 1184s Seq: random (length 20000000, 14812 genes) 1184s 1185s Wall clock time = 35 seconds. 1185s calibrate.sh: Running TransTerm on random sequence with %AT = 0.82 1193s WARNING: USING VERSION 1.0 CONFIDENCE. 1193s (use -p expterm.dat to use v2.0 confidence) 1193s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 1228s Seq: random (length 20000000, 14765 genes) 1228s 1229s Wall clock time = 36 seconds. 1229s calibrate.sh: Running TransTerm on random sequence with %AT = 0.84 1237s WARNING: USING VERSION 1.0 CONFIDENCE. 1237s (use -p expterm.dat to use v2.0 confidence) 1237s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 1272s Seq: random (length 20000000, 14737 genes) 1272s 1272s Wall clock time = 36 seconds. 1272s Creating distribution file in expterm.dat 1274s Done. You can run transterm with this background distribution using '-r expterm.dat' 1274s PASS 1274s Test 2 1274s You must specify a background distribution file with '-p expterm.dat'. 1274s 2ndscore (Dec 2 2025) 1274s 1274s --gc=-2.1 --au=-1.3 --gu=-0.8 --mm=3.5 --gap=3.9 1274s --max-len=59 --max-loop=13 --min-loop=3 1274s --loop-penalty=4.1,4.9,4.4,4.7,5,5.1,5.2,5.3,5.4,5.5,5.6 1274s 1274s 1. Seq: 9258 (length 34) 1274s 2. Seq: 9361 (length 611) 1274s 3. Seq: 9365 (length 796) 1274s 4. Seq: 9371 (length 762) 1274s 5. Seq: 9544 (length 810) 1274s 6. Seq: 9598 (length 797) 1274s 7. Seq: 9606 (length 797) 1274s 8. Seq: 9615 (length 802) 1274s 9. Seq: 9685 (length 687) 1274s 10. Seq: 9785 (length 793) 1274s 11. Seq: 9796 (length 806) 1274s 12. Seq: 9913 (length 798) 1274s 13. Seq: 9986 (length 789) 1274s 14. Seq: 10090 (length 770) 1274s 15. Seq: 10116 (length 832) 1274s 16. Seq: 10141 (length 327) 1274s 17. Seq: 13616 (length 884)PASS 1274s 1274s 18. Seq: 28377 (length 87) 1274s 19. Seq: 42254 (length 372) 1274s autopkgtest [22:31:03]: test run-unit-test: -----------------------] 1274s autopkgtest [22:31:03]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 1274s run-unit-test PASS 1275s autopkgtest [22:31:04]: @@@@@@@@@@@@@@@@@@@@ summary 1275s run-unit-test PASS