0s autopkgtest [07:05:28]: starting date and time: 2025-10-24 07:05:28+0000 0s autopkgtest [07:05:28]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [07:05:28]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.4rgpxm98/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:pytest,src:python-pluggy --apt-upgrade spectral-cube --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=pytest/8.4.2-1 python-pluggy/1.6.0-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-amd64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@sto01-8.secgroup --name adt-resolute-amd64-spectral-cube-20251024-070527-juju-7f2275-prod-proposed-migration-environment-15-08bbc707-72d6-4464-8a39-e9eb36085926 --image adt/ubuntu-resolute-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-autopkgtest-workers-amd64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 3s Creating nova instance adt-resolute-amd64-spectral-cube-20251024-070527-juju-7f2275-prod-proposed-migration-environment-15-08bbc707-72d6-4464-8a39-e9eb36085926 from image adt/ubuntu-resolute-amd64-server-20251024.img (UUID 310022dd-8dd9-48c7-a816-c2d8419ef402)... 35s autopkgtest [07:06:03]: testbed dpkg architecture: amd64 35s autopkgtest [07:06:03]: testbed apt version: 3.1.8ubuntu1 36s autopkgtest [07:06:04]: @@@@@@@@@@@@@@@@@@@@ test bed setup 36s autopkgtest [07:06:04]: testbed release detected to be: None 36s autopkgtest [07:06:04]: updating testbed package index (apt update) 37s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [87.8 kB] 37s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 37s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 37s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 37s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [533 kB] 37s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [15.0 kB] 37s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [5028 B] 37s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [61.6 kB] 37s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main i386 Packages [97.2 kB] 37s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 Packages [147 kB] 37s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 c-n-f Metadata [3040 B] 37s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 Packages [28.0 kB] 37s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/restricted i386 Packages [3208 B] 37s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 c-n-f Metadata [336 B] 37s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 Packages [385 kB] 37s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/universe i386 Packages [145 kB] 37s Get:17 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 c-n-f Metadata [10.8 kB] 37s Get:18 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse i386 Packages [3156 B] 38s Get:19 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 Packages [6744 B] 38s Get:20 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 c-n-f Metadata [492 B] 38s Fetched 1532 kB in 1s (1631 kB/s) 39s Reading package lists... 39s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 39s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 39s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 39s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 40s Reading package lists... 40s Reading package lists... 40s Building dependency tree... 40s Reading state information... 40s Calculating upgrade... 40s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 40s autopkgtest [07:06:08]: upgrading testbed (apt dist-upgrade and autopurge) 40s Reading package lists... 40s Building dependency tree... 40s Reading state information... 40s Calculating upgrade... 40s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 41s Reading package lists... 41s Building dependency tree... 41s Reading state information... 41s Solving dependencies... 41s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 43s autopkgtest [07:06:11]: testbed running kernel: Linux 6.17.0-5-generic #5-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 22 10:00:33 UTC 2025 43s autopkgtest [07:06:11]: @@@@@@@@@@@@@@@@@@@@ apt-source spectral-cube 44s Get:1 http://ftpmaster.internal/ubuntu resolute/universe spectral-cube 0.6.6-2 (dsc) [2266 B] 44s Get:2 http://ftpmaster.internal/ubuntu resolute/universe spectral-cube 0.6.6-2 (tar) [262 kB] 44s Get:3 http://ftpmaster.internal/ubuntu resolute/universe spectral-cube 0.6.6-2 (diff) [6268 B] 44s gpgv: Signature made Mon Jan 27 09:58:56 2025 UTC 44s gpgv: using RSA key 8F6DE104377F3B11E741748731F3144544A1741A 44s gpgv: issuer "tchet@debian.org" 44s gpgv: Can't check signature: No public key 44s dpkg-source: warning: cannot verify inline signature for ./spectral-cube_0.6.6-2.dsc: no acceptable signature found 44s autopkgtest [07:06:12]: testing package spectral-cube version 0.6.6-2 44s autopkgtest [07:06:12]: build not needed 45s autopkgtest [07:06:13]: test command1: preparing testbed 45s Reading package lists... 45s Building dependency tree... 45s Reading state information... 45s Solving dependencies... 45s The following NEW packages will be installed: 45s blt fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lyx libblas3 45s libdeflate0 liberfa1 libfontconfig1 libgfortran5 libgomp1 libgraphite2-3 45s libharfbuzz0b libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery 45s libjs-jquery-hotkeys libjs-jquery-isonscreen libjs-jquery-metadata 45s libjs-jquery-tablesorter libjs-jquery-throttle-debounce libjs-jquery-ui 45s libjs-sphinxdoc libjs-underscore liblapack3 liblcms2-2 liblerc4 libopenjp2-7 45s libqhull-r8.0 libraqm0 libsharpyuv0 libtcl8.6 libtiff6 libtk8.6 libwcs8 45s libwebp7 libwebpdemux2 libwebpmux3 libxft2 libxrender1 libxslt1.1 libxss1 45s libzopfli1 python-matplotlib-data python3-astropy python3-astropy-iers-data 45s python3-brotli python3-casa-formats-io python3-click python3-cloudpickle 45s python3-contourpy python3-coverage python3-cycler python3-dask 45s python3-dateutil python3-decorator python3-erfa python3-fonttools python3-fs 45s python3-fsspec python3-hypothesis python3-iniconfig python3-joblib 45s python3-kiwisolver python3-locket python3-lxml python3-lz4 45s python3-matplotlib python3-mpmath python3-numpy python3-numpy-dev 45s python3-packaging python3-partd python3-pil python3-pil.imagetk 45s python3-platformdirs python3-pluggy python3-ply python3-pytest 45s python3-pytest-arraydiff python3-pytest-astropy 45s python3-pytest-astropy-header python3-pytest-cov python3-pytest-doctestplus 45s python3-pytest-filter-subpackage python3-pytest-mock 45s python3-pytest-remotedata python3-radio-beam python3-scipy 45s python3-sortedcontainers python3-spectral-cube python3-sympy python3-tk 45s python3-toolz python3-tqdm python3-ufolib2 python3-unicodedata2 45s python3-zopfli python3.13-tk tk8.6-blt2.5 unicode-data x11-common 45s 0 upgraded, 104 newly installed, 0 to remove and 0 not upgraded. 45s Need to get 88.0 MB of archives. 45s After this operation, 418 MB of additional disk space will be used. 45s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-numpy-dev amd64 1:2.2.4+ds-1ubuntu1 [147 kB] 45s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas3 amd64 3.12.1-6build1 [263 kB] 45s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran5 amd64 15.2.0-5ubuntu1 [939 kB] 46s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 liblapack3 amd64 3.12.1-6build1 [2762 kB] 46s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-numpy amd64 1:2.2.4+ds-1ubuntu1 [5377 kB] 47s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 libtcl8.6 amd64 8.6.17+dfsg-1 [1036 kB] 47s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 47s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 47s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig-config amd64 2.15.0-2.3ubuntu1 [38.0 kB] 47s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 libfontconfig1 amd64 2.15.0-2.3ubuntu1 [141 kB] 47s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 libxrender1 amd64 1:0.9.12-1 [19.8 kB] 47s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 47s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 x11-common all 1:7.7+24ubuntu1 [22.4 kB] 47s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 47s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 libtk8.6 amd64 8.6.17-1 [823 kB] 47s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-8 [694 kB] 47s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 blt amd64 2.5.3+dfsg-8 [4824 B] 47s Get:18 http://ftpmaster.internal/ubuntu resolute/universe amd64 fonts-lyx all 2.4.4-1 [171 kB] 47s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 libdeflate0 amd64 1.23-2 [49.9 kB] 47s Get:20 http://ftpmaster.internal/ubuntu resolute/main amd64 libgomp1 amd64 15.2.0-5ubuntu1 [151 kB] 47s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 47s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 libharfbuzz0b amd64 12.1.0-1 [535 kB] 47s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 libimagequant0 amd64 2.18.0-1build1 [36.3 kB] 47s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-turbo8 amd64 2.1.5-4ubuntu2 [152 kB] 47s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 47s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 47s Get:27 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-metadata all 12-4 [6582 B] 47s Get:28 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-tablesorter all 1:2.31.3+dfsg1-4 [192 kB] 47s Get:29 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-throttle-debounce all 1.1+dfsg.1-2 [12.5 kB] 47s Get:30 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 47s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 47s Get:32 http://ftpmaster.internal/ubuntu resolute/main amd64 libjs-sphinxdoc all 8.2.3-1ubuntu2 [28.0 kB] 47s Get:33 http://ftpmaster.internal/ubuntu resolute/main amd64 liblcms2-2 amd64 2.16-2 [212 kB] 47s Get:34 http://ftpmaster.internal/ubuntu resolute/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB] 47s Get:35 http://ftpmaster.internal/ubuntu resolute/universe amd64 libqhull-r8.0 amd64 2020.2-6build1 [193 kB] 47s Get:36 http://ftpmaster.internal/ubuntu resolute/main amd64 libraqm0 amd64 0.10.3-1 [15.4 kB] 47s Get:37 http://ftpmaster.internal/ubuntu resolute/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB] 47s Get:38 http://ftpmaster.internal/ubuntu resolute/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 47s Get:39 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB] 47s Get:40 http://ftpmaster.internal/ubuntu resolute/main amd64 libtiff6 amd64 4.7.0-3ubuntu3 [209 kB] 47s Get:41 http://ftpmaster.internal/ubuntu resolute/universe amd64 libwcs8 amd64 8.4+ds-1 [310 kB] 47s Get:42 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebpdemux2 amd64 1.5.0-0.1 [13.0 kB] 47s Get:43 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebpmux3 amd64 1.5.0-0.1 [27.6 kB] 47s Get:44 http://ftpmaster.internal/ubuntu resolute/main amd64 libxslt1.1 amd64 1.1.43-0.1 [172 kB] 47s Get:45 http://ftpmaster.internal/ubuntu resolute/universe amd64 libzopfli1 amd64 1.0.3-3 [141 kB] 47s Get:46 http://ftpmaster.internal/ubuntu resolute/universe amd64 python-matplotlib-data all 3.10.1+dfsg1-4 [2930 kB] 47s Get:47 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-iniconfig all 1.1.1-2 [6024 B] 47s Get:48 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-packaging all 25.0-1 [52.8 kB] 47s Get:49 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pluggy all 1.6.0-1 [21.0 kB] 47s Get:50 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 python3-pytest all 8.4.2-1 [268 kB] 47s Get:51 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-dateutil all 2.9.0-4 [80.3 kB] 47s Get:52 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-sortedcontainers all 2.4.0-2 [27.6 kB] 47s Get:53 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-hypothesis all 6.130.5-2 [341 kB] 47s Get:54 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pytest-arraydiff all 0.6.1-3 [10.2 kB] 47s Get:55 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pytest-astropy-header all 0.2.2-2 [8620 B] 47s Get:56 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-coverage amd64 7.8.2+dfsg1-1 [157 kB] 47s Get:57 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-hotkeys all 0.2.0-1 [13.3 kB] 47s Get:58 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-isonscreen all 1.2.0-1.1 [3244 B] 47s Get:59 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pytest-cov all 5.0.0-1 [21.3 kB] 47s Get:60 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pytest-doctestplus all 1.5.0-1 [23.9 kB] 47s Get:61 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pytest-filter-subpackage all 0.2.0-2 [6292 B] 47s Get:62 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pytest-mock all 3.14.0-3 [11.8 kB] 47s Get:63 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pytest-remotedata all 0.4.1-1 [8650 B] 47s Get:64 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pytest-astropy all 0.11.0-1 [5902 B] 47s Get:65 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-ply all 3.11-9 [45.8 kB] 47s Get:66 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-astropy-iers-data all 0.2025.1.6.0.33.42-1 [1212 kB] 47s Get:67 http://ftpmaster.internal/ubuntu resolute/universe amd64 liberfa1 amd64 2.0.1-1build1 [139 kB] 47s Get:68 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-erfa amd64 2.0.1.5+ds-1build1 [321 kB] 47s Get:69 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-astropy amd64 7.0.1-3 [3890 kB] 47s Get:70 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-brotli amd64 1.1.0-2build6 [340 kB] 47s Get:71 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-fsspec all 2025.3.2-1ubuntu1 [217 kB] 47s Get:72 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-toolz all 1.0.0-2 [45.0 kB] 47s Get:73 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-click all 8.2.0+0.really.8.1.8-1 [80.0 kB] 47s Get:74 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-cloudpickle all 3.1.1-1 [22.4 kB] 47s Get:75 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-locket all 1.0.0-2 [5872 B] 47s Get:76 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-partd all 1.4.2-1 [15.7 kB] 47s Get:77 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-dask all 2024.12.1+dfsg-2 [875 kB] 48s Get:78 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-casa-formats-io amd64 0.3.0-1build1 [288 kB] 48s Get:79 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-contourpy amd64 1.3.1-1build1 [218 kB] 48s Get:80 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-cycler all 0.12.1-2 [9850 B] 48s Get:81 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-decorator all 5.2.1-2 [28.1 kB] 48s Get:82 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-platformdirs all 4.3.7-1 [16.9 kB] 48s Get:83 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-fs all 2.4.16-7 [90.8 kB] 48s Get:84 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-lxml amd64 6.0.1-1build1 [2336 kB] 48s Get:85 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-lz4 amd64 4.4.4+dfsg-3 [27.5 kB] 48s Get:86 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-scipy amd64 1.15.3-1ubuntu1 [20.3 MB] 48s Get:87 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-mpmath all 1.3.0-1 [425 kB] 48s Get:88 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-sympy all 1.13.3-5 [4229 kB] 48s Get:89 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-ufolib2 all 0.17.1+dfsg1-1 [33.5 kB] 48s Get:90 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-unicodedata2 amd64 16.0.0+ds-1build1 [400 kB] 48s Get:91 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-zopfli amd64 0.2.3.post1-1 [10.8 kB] 48s Get:92 http://ftpmaster.internal/ubuntu resolute/universe amd64 unicode-data all 16.0.0-1 [9513 kB] 49s Get:93 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-fonttools amd64 4.57.0-2build1 [1731 kB] 49s Get:94 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-joblib all 1.4.2-4 [205 kB] 49s Get:95 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-kiwisolver amd64 1.4.7-3build2 [63.0 kB] 49s Get:96 http://ftpmaster.internal/ubuntu resolute/main amd64 libopenjp2-7 amd64 2.5.3-2.1 [188 kB] 49s Get:97 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-pil amd64 11.3.0-1ubuntu2 [504 kB] 49s Get:98 http://ftpmaster.internal/ubuntu resolute/main amd64 python3.13-tk amd64 3.13.9-1 [108 kB] 49s Get:99 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-tk amd64 3.13.5-1 [9916 B] 49s Get:100 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pil.imagetk amd64 11.3.0-1ubuntu2 [9804 B] 49s Get:101 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-matplotlib amd64 3.10.1+dfsg1-4 [18.0 MB] 49s Get:102 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-radio-beam all 0.3.8-2 [66.5 kB] 49s Get:103 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-tqdm all 4.67.1-5 [92.1 kB] 49s Get:104 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-spectral-cube all 0.6.6-2 [155 kB] 49s Fetched 88.0 MB in 4s (23.1 MB/s) 49s Selecting previously unselected package python3-numpy-dev:amd64. 49s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78459 files and directories currently installed.) 49s Preparing to unpack .../000-python3-numpy-dev_1%3a2.2.4+ds-1ubuntu1_amd64.deb ... 49s Unpacking python3-numpy-dev:amd64 (1:2.2.4+ds-1ubuntu1) ... 49s Selecting previously unselected package libblas3:amd64. 49s Preparing to unpack .../001-libblas3_3.12.1-6build1_amd64.deb ... 49s Unpacking libblas3:amd64 (3.12.1-6build1) ... 49s Selecting previously unselected package libgfortran5:amd64. 49s Preparing to unpack .../002-libgfortran5_15.2.0-5ubuntu1_amd64.deb ... 49s Unpacking libgfortran5:amd64 (15.2.0-5ubuntu1) ... 49s Selecting previously unselected package liblapack3:amd64. 49s Preparing to unpack .../003-liblapack3_3.12.1-6build1_amd64.deb ... 49s Unpacking liblapack3:amd64 (3.12.1-6build1) ... 49s Selecting previously unselected package python3-numpy. 49s Preparing to unpack .../004-python3-numpy_1%3a2.2.4+ds-1ubuntu1_amd64.deb ... 49s Unpacking python3-numpy (1:2.2.4+ds-1ubuntu1) ... 50s Selecting previously unselected package libtcl8.6:amd64. 50s Preparing to unpack .../005-libtcl8.6_8.6.17+dfsg-1_amd64.deb ... 50s Unpacking libtcl8.6:amd64 (8.6.17+dfsg-1) ... 50s Selecting previously unselected package fonts-dejavu-mono. 50s Preparing to unpack .../006-fonts-dejavu-mono_2.37-8_all.deb ... 50s Unpacking fonts-dejavu-mono (2.37-8) ... 50s Selecting previously unselected package fonts-dejavu-core. 50s Preparing to unpack .../007-fonts-dejavu-core_2.37-8_all.deb ... 50s Unpacking 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libjpeg8:amd64. 50s Preparing to unpack .../024-libjpeg8_8c-2ubuntu11_amd64.deb ... 50s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 50s Selecting previously unselected package libjs-jquery. 50s Preparing to unpack .../025-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 50s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 50s Selecting previously unselected package libjs-jquery-metadata. 50s Preparing to unpack .../026-libjs-jquery-metadata_12-4_all.deb ... 50s Unpacking libjs-jquery-metadata (12-4) ... 50s Selecting previously unselected package libjs-jquery-tablesorter. 50s Preparing to unpack .../027-libjs-jquery-tablesorter_1%3a2.31.3+dfsg1-4_all.deb ... 50s Unpacking libjs-jquery-tablesorter (1:2.31.3+dfsg1-4) ... 50s Selecting previously unselected package libjs-jquery-throttle-debounce. 50s Preparing to unpack .../028-libjs-jquery-throttle-debounce_1.1+dfsg.1-2_all.deb ... 50s Unpacking libjs-jquery-throttle-debounce (1.1+dfsg.1-2) ... 50s Selecting previously unselected package 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previously unselected package libwcs8:amd64. 50s Preparing to unpack .../040-libwcs8_8.4+ds-1_amd64.deb ... 50s Unpacking libwcs8:amd64 (8.4+ds-1) ... 50s Selecting previously unselected package libwebpdemux2:amd64. 50s Preparing to unpack .../041-libwebpdemux2_1.5.0-0.1_amd64.deb ... 50s Unpacking libwebpdemux2:amd64 (1.5.0-0.1) ... 50s Selecting previously unselected package libwebpmux3:amd64. 50s Preparing to unpack .../042-libwebpmux3_1.5.0-0.1_amd64.deb ... 50s Unpacking libwebpmux3:amd64 (1.5.0-0.1) ... 50s Selecting previously unselected package libxslt1.1:amd64. 50s Preparing to unpack .../043-libxslt1.1_1.1.43-0.1_amd64.deb ... 50s Unpacking libxslt1.1:amd64 (1.1.43-0.1) ... 50s Selecting previously unselected package libzopfli1. 50s Preparing to unpack .../044-libzopfli1_1.0.3-3_amd64.deb ... 50s Unpacking libzopfli1 (1.0.3-3) ... 50s Selecting previously unselected package python-matplotlib-data. 50s Preparing to unpack .../045-python-matplotlib-data_3.10.1+dfsg1-4_all.deb 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python3-sortedcontainers. 50s Preparing to unpack .../051-python3-sortedcontainers_2.4.0-2_all.deb ... 50s Unpacking python3-sortedcontainers (2.4.0-2) ... 50s Selecting previously unselected package python3-hypothesis. 50s Preparing to unpack .../052-python3-hypothesis_6.130.5-2_all.deb ... 50s Unpacking python3-hypothesis (6.130.5-2) ... 50s Selecting previously unselected package python3-pytest-arraydiff. 50s Preparing to unpack .../053-python3-pytest-arraydiff_0.6.1-3_all.deb ... 50s Unpacking python3-pytest-arraydiff (0.6.1-3) ... 50s Selecting previously unselected package python3-pytest-astropy-header. 50s Preparing to unpack .../054-python3-pytest-astropy-header_0.2.2-2_all.deb ... 50s Unpacking python3-pytest-astropy-header (0.2.2-2) ... 50s Selecting previously unselected package python3-coverage. 50s Preparing to unpack .../055-python3-coverage_7.8.2+dfsg1-1_amd64.deb ... 50s Unpacking python3-coverage (7.8.2+dfsg1-1) ... 50s Selecting previously unselected package 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Setting up python3-astropy (7.0.1-3) ... 64s Setting up tk8.6-blt2.5 (2.5.3+dfsg-8) ... 64s Setting up blt (2.5.3+dfsg-8) ... 64s Setting up python3-casa-formats-io (0.3.0-1build1) ... 65s Setting up python3-tk:amd64 (3.13.5-1) ... 65s Setting up python3-pil.imagetk:amd64 (11.3.0-1ubuntu2) ... 65s Setting up python3-fonttools (4.57.0-2build1) ... 65s Setting up python3-ufolib2 (0.17.1+dfsg1-1) ... 65s Setting up python3-matplotlib (3.10.1+dfsg1-4) ... 66s Setting up python3-radio-beam (0.3.8-2) ... 66s Setting up python3-spectral-cube (0.6.6-2) ... 66s Processing triggers for libc-bin (2.42-0ubuntu3) ... 66s Processing triggers for man-db (2.13.1-1) ... 67s autopkgtest [07:06:35]: test command1: cd $AUTOPKGTEST_TMP && python3 -m pytest --pyargs spectral_cube 67s autopkgtest [07:06:35]: test command1: [----------------------- 69s ============================= test session starts ============================== 69s platform linux -- Python 3.13.9, pytest-8.4.2, pluggy-1.6.0 69s rootdir: /tmp/autopkgtest.vEDTVW/autopkgtest_tmp 69s plugins: doctestplus-1.5.0, hypothesis-6.130.5, astropy-header-0.2.2, astropy-0.11.0, mock-3.14.0, cov-5.0.0, arraydiff-0.6.1, remotedata-0.4.1, typeguard-4.4.2, filter-subpackage-0.2.0 69s collected 1719 items 69s 76s tests/test_analysis_functions.py ................... [ 1%] 76s tests/test_casafuncs.py ......sssssssssssssss [ 2%] 76s tests/test_cube_utils.py ....... [ 2%] 77s tests/test_dask.py .s...s.......s [ 3%] 77s tests/test_io.py ....................... [ 4%] 78s tests/test_masks.py .................................................... [ 7%] 78s .................................XX.... [ 10%] 79s tests/test_moments.py .................................................. [ 13%] 81s ........................................................................ [ 17%] 83s .................................................................. [ 21%] 85s tests/test_performance.py ...s.. [ 21%] 86s tests/test_projection.py .......................x..............xxx...... [ 24%] 103s .x...................................................................... [ 28%] 104s .... [ 28%] 110s tests/test_regrid.py ..........ssss......................sss....ssssssss [ 31%] 110s sssss [ 31%] 111s tests/test_spectral_axis.py ............................................ 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[ 79%] 218s ssssss.................................s.s..............xxxx............ [ 83%] 245s ........................................................ssss............ [ 87%] 255s ................xxxxxxxx......................................... [ 91%] 256s tests/test_stokes_spectral_cube.py ..................................... [ 93%] 262s ............................................................... [ 97%] 263s tests/test_subcubes.py ..ssssssssssssssssssss [ 98%] 265s tests/test_visualization.py ....ssssssss [ 99%] 266s tests/test_wcs_utils.py ............ [100%] 266s 266s =============================== warnings summary =============================== 266s ../../../usr/lib/python3/dist-packages/spectral_cube/tests/test_spectral_cube.py:1672 266s /usr/lib/python3/dist-packages/spectral_cube/tests/test_spectral_cube.py:1672: PytestUnknownMarkWarning: Unknown pytest.mark.openfiles_ignore - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html 266s @pytest.mark.openfiles_ignore 266s 266s ../../../usr/lib/python3/dist-packages/spectral_cube/tests/test_spectral_cube.py:1685 266s /usr/lib/python3/dist-packages/spectral_cube/tests/test_spectral_cube.py:1685: PytestUnknownMarkWarning: Unknown pytest.mark.openfiles_ignore - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html 266s @pytest.mark.openfiles_ignore 266s 266s ../../../usr/lib/python3/dist-packages/spectral_cube/tests/test_spectral_cube.py:2434 266s /usr/lib/python3/dist-packages/spectral_cube/tests/test_spectral_cube.py:2434: PytestUnknownMarkWarning: Unknown pytest.mark.openfiles_ignore - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html 266s @pytest.mark.openfiles_ignore 266s 266s ../../../usr/lib/python3/dist-packages/spectral_cube/tests/test_spectral_cube.py:2448 266s /usr/lib/python3/dist-packages/spectral_cube/tests/test_spectral_cube.py:2448: PytestUnknownMarkWarning: Unknown pytest.mark.openfiles_ignore - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html 266s @pytest.mark.openfiles_ignore 266s 266s ../../../usr/lib/python3/dist-packages/spectral_cube/tests/test_dask.py:4 266s /usr/lib/python3/dist-packages/spectral_cube/tests/test_dask.py:4: DeprecationWarning: numpy.core.shape_base is deprecated and has been renamed to numpy._core.shape_base. The numpy._core namespace contains private NumPy internals and its use is discouraged, as NumPy internals can change without warning in any release. In practice, most real-world usage of numpy.core is to access functionality in the public NumPy API. If that is the case, use the public NumPy API. If not, you are using NumPy internals. If you would still like to access an internal attribute, use numpy._core.shape_base.block. 266s from numpy.core.shape_base import block 266s 266s ../../../usr/lib/python3/dist-packages/spectral_cube/tests/test_visualization.py:7 266s /usr/lib/python3/dist-packages/spectral_cube/tests/test_visualization.py:7: PytestUnknownMarkWarning: Unknown pytest.mark.openfiles_ignore - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html 266s @pytest.mark.openfiles_ignore 266s 266s ../../../usr/lib/python3/dist-packages/spectral_cube/tests/test_visualization.py:27 266s /usr/lib/python3/dist-packages/spectral_cube/tests/test_visualization.py:27: PytestUnknownMarkWarning: Unknown pytest.mark.openfiles_ignore - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html 266s @pytest.mark.openfiles_ignore 266s 266s ../../../usr/lib/python3/dist-packages/spectral_cube/tests/test_visualization.py:41 266s /usr/lib/python3/dist-packages/spectral_cube/tests/test_visualization.py:41: PytestUnknownMarkWarning: Unknown pytest.mark.openfiles_ignore - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html 266s @pytest.mark.openfiles_ignore 266s 266s ../../../usr/lib/python3/dist-packages/spectral_cube/tests/test_visualization.py:48 266s /usr/lib/python3/dist-packages/spectral_cube/tests/test_visualization.py:48: PytestUnknownMarkWarning: Unknown pytest.mark.openfiles_ignore - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html 266s @pytest.mark.openfiles_ignore 266s 266s tests/test_analysis_functions.py: 6 warnings 266s tests/test_masks.py: 4 warnings 266s /usr/lib/python3/dist-packages/spectral_cube/spectral_cube.py:1842: SliceWarning: The maxmimum and minimum spectral channel in the spectralslab are identical; this indicates that one or both are likely incorrect and/or out of range. 266s warnings.warn("The maxmimum and minimum spectral channel in the spectral" 266s 266s tests/test_casafuncs.py::test_casa_read_basic[False-False] 266s tests/test_casafuncs.py::test_casa_read_basic[False-True] 266s tests/test_casafuncs.py::test_casa_read_basic[True-False] 266s tests/test_casafuncs.py::test_casa_read_basic[True-True] 266s tests/test_casafuncs.py::test_casa_read_basic_nomask 266s /usr/lib/python3/dist-packages/casa_formats_io/casa_dask.py:248: RuntimeWarning: divide by zero encountered in scalar remainder 266s factors = [f for f in range(stacks[dim] + 1) if stacks[dim] % f == 0] 266s 266s tests/test_casafuncs.py: 5 warnings 266s tests/test_spectral_axis.py: 12 warnings 266s /usr/lib/python3/dist-packages/astropy/wcs/wcs.py:805: FITSFixedWarning: 'obsfix' made the change 'Set OBSGEO-L to -107.618334 from OBSGEO-[XYZ]. 266s Set OBSGEO-B to 34.078813 from OBSGEO-[XYZ]. 266s Set OBSGEO-H to 2111.883 from OBSGEO-[XYZ]'. 266s warnings.warn( 266s 266s tests/test_casafuncs.py: 5 warnings 266s tests/test_dask.py: 4 warnings 266s tests/test_io.py: 11 warnings 266s tests/test_masks.py: 10 warnings 266s tests/test_projection.py: 24 warnings 266s tests/test_spectral_cube.py: 484 warnings 266s tests/test_subcubes.py: 2 warnings 266s /usr/lib/python3/dist-packages/spectral_cube/io/core.py:182: StokesWarning: Cube is a Stokes cube, returning spectral cube for I component 266s warnings.warn("Cube is a Stokes cube, " 266s 266s tests/test_casafuncs.py::test_casa_read_basic[False-False] 266s tests/test_casafuncs.py::test_casa_read_basic[False-True] 266s tests/test_casafuncs.py::test_casa_read_basic[True-False] 266s tests/test_casafuncs.py::test_casa_read_basic[True-True] 266s tests/test_casafuncs.py::test_casa_read_basic_nomask 266s /usr/lib/python3/dist-packages/spectral_cube/spectral_cube.py:1443: UserWarning: The data were copied; it was not possible to create a view on the data 266s warnings.warn("The data were copied; it was not possible to create a view on the data") 266s 266s tests/test_cube_utils.py: 6 warnings 266s tests/test_dask.py: 28 warnings 266s tests/test_io.py: 43 warnings 266s tests/test_masks.py: 142 warnings 266s tests/test_projection.py: 192 warnings 266s tests/test_regrid.py: 120 warnings 266s tests/test_spectral_axis.py: 7 warnings 266s tests/test_spectral_cube.py: 3721 warnings 266s tests/test_subcubes.py: 38 warnings 266s tests/test_visualization.py: 12 warnings 266s tests/test_wcs_utils.py: 1 warning 266s /usr/lib/python3/dist-packages/astropy/wcs/wcs.py:805: FITSFixedWarning: 'datfix' made the change 'Set MJD-OBS to 50982.687794 from DATE-OBS'. 266s warnings.warn( 266s 266s tests/test_io.py::test_lmv_fits 266s /usr/lib/python3/dist-packages/spectral_cube/io/class_lmv.py:182: UserWarning: Invalid section length found for noise section 266s warnings.warn("Invalid section length found for noise section") 266s 266s tests/test_io.py::test_lmv_fits 266s /usr/lib/python3/dist-packages/spectral_cube/io/class_lmv.py:211: UserWarning: Found additional information in the last 7 bytes 266s warnings.warn("Found additional information in the last 7 bytes") 266s 266s tests/test_io.py::test_lmv_fits 266s /usr/lib/python3/dist-packages/spectral_cube/io/class_lmv.py:224: UserWarning: Data min location does not match that on file. Possible error reading data. 266s warnings.warn("Data min location does not match that on file. " 266s 266s tests/test_io.py::test_lmv_fits 266s /usr/lib/python3/dist-packages/spectral_cube/io/class_lmv.py:228: UserWarning: Data max location does not match that on file. Possible error reading data. 266s warnings.warn("Data max location does not match that on file. " 266s 266s tests/test_io.py: 4 warnings 266s tests/test_spectral_cube.py: 28 warnings 266s /usr/lib/python3/dist-packages/astropy/wcs/wcs.py:580: FITSFixedWarning: The WCS transformation has more axes (4) than the image it is associated with (3) 266s warnings.warn( 266s 266s tests/test_io.py::test_4d_beams_nounits[False] 266s tests/test_io.py::test_4d_beams_nounits[True] 266s /usr/lib/python3/dist-packages/spectral_cube/io/fits.py:105: BeamWarning: Missing beam units keyword TUNIT1 in the header. 266s warnings.warn(BeamWarning(f"Missing beam units keyword {key}" 266s 266s tests/test_io.py::test_4d_beams_nounits[False] 266s tests/test_io.py::test_4d_beams_nounits[True] 266s /usr/lib/python3/dist-packages/spectral_cube/io/fits.py:105: BeamWarning: Missing beam units keyword TUNIT2 in the header. 266s warnings.warn(BeamWarning(f"Missing beam units keyword {key}" 266s 266s tests/test_io.py::test_4d_beams_nounits[False] 266s tests/test_io.py::test_4d_beams_nounits[True] 266s /usr/lib/python3/dist-packages/spectral_cube/io/fits.py:105: BeamWarning: Missing beam units keyword TUNIT3 in the header. 266s warnings.warn(BeamWarning(f"Missing beam units keyword {key}" 266s 266s tests/test_masks.py: 7 warnings 266s tests/test_projection.py: 1 warning 266s tests/test_spectral_cube.py: 40 warnings 266s /usr/lib/python3/dist-packages/spectral_cube/utils.py:61: PossiblySlowWarning: This function () requires loading the entire cube into memory and may therefore be slow. 266s warnings.warn("This function ({0}) requires loading the entire cube into " 266s 266s tests/test_masks.py::test_1dcomparison_mask_1d_index[True] 266s tests/test_masks.py::test_1dmask_indexing[True] 266s tests/test_masks.py::test_numpy_ma_tools[True] 266s tests/test_masks.py::test_numpy_ma_tools_2d[True] 266s tests/test_masks.py::test_filled[True] 266s tests/test_masks.py::test_boolean_array_composite_mask[True] 266s tests/test_spectral_cube.py::TestNumpyMethods::test_transpose[True-median] 266s tests/test_spectral_cube.py::TestNumpyMethods::test_transpose[True-median] 266s /usr/lib/python3/dist-packages/spectral_cube/dask_spectral_cube.py:76: PossiblySlowWarning: Dask requires loading the whole cube into memory for median 266s calculations. This may result in slow computation. 266s warnings.warn(message=textwrap.dedent(f""" 266s 266s tests/test_masks.py: 1 warning 266s tests/test_projection.py: 3 warnings 266s tests/test_spectral_cube.py: 38 warnings 266s /usr/lib/python3/dist-packages/spectral_cube/utils.py:61: PossiblySlowWarning: This function () requires loading the entire cube into memory and may therefore be slow. 266s warnings.warn("This function ({0}) requires loading the entire cube into " 266s 266s tests/test_moments.py: 14 warnings 266s /usr/lib/python3/dist-packages/spectral_cube/spectral_cube.py:1672: VarianceWarning: Note that the second moment returned will be a variance map. To get a linewidth map, use the SpectralCube.linewidth_fwhm() or SpectralCube.linewidth_sigma() methods instead. 266s warnings.warn("Note that the second moment returned will be a " 266s 266s tests/test_moments.py: 86 warnings 266s /usr/lib/python3/dist-packages/spectral_cube/wcs_utils.py:154: WCSWarning: Slicing across a celestial axis results in an invalid WCS, so the celestial projection (TAN) is being removed. The WCS indices being kept were [0 2]. 266s warnings.warn("Slicing across a celestial axis results " 266s 266s tests/test_moments.py: 86 warnings 266s /usr/lib/python3/dist-packages/spectral_cube/wcs_utils.py:154: WCSWarning: Slicing across a celestial axis results in an invalid WCS, so the celestial projection (TAN) is being removed. The WCS indices being kept were [1 2]. 266s warnings.warn("Slicing across a celestial axis results " 266s 266s tests/test_moments.py: 14 warnings 266s /usr/lib/python3/dist-packages/spectral_cube/dask_spectral_cube.py:1061: VarianceWarning: Note that the second moment returned will be a variance map. To get a linewidth map, use the SpectralCube.linewidth_fwhm() or SpectralCube.linewidth_sigma() methods instead. 266s warnings.warn("Note that the second moment returned will be a " 266s 266s tests/test_moments.py::test_consistent_mask_handling[False-2-1] 266s tests/test_moments.py::test_consistent_mask_handling[False-2-2] 266s /usr/lib/python3/dist-packages/spectral_cube/_moments.py:182: RuntimeWarning: invalid value encountered in divide 266s return (np.nansum(data * pix_cen, axis=axis) / 266s 266s tests/test_moments.py::test_consistent_mask_handling[False-2-1] 266s tests/test_moments.py::test_consistent_mask_handling[False-2-2] 266s /usr/lib/python3/dist-packages/spectral_cube/_moments.py:86: RuntimeWarning: invalid value encountered in divide 266s return result / weights 266s 266s tests/test_moments.py::test_consistent_mask_handling[False-2-2] 266s /usr/lib/python3/dist-packages/spectral_cube/_moments.py:192: RuntimeWarning: invalid value encountered in divide 266s return (np.nansum(data * (pix_cen - mom1) ** order, axis=axis) / 266s 266s tests/test_projection.py: 2 warnings 266s tests/test_regrid.py: 2 warnings 266s tests/test_spectral_cube.py: 171 warnings 266s /usr/lib/python3/dist-packages/spectral_cube/wcs_utils.py:154: WCSWarning: Slicing across a celestial axis results in an invalid WCS, so the celestial projection (SIN) is being removed. The WCS indices being kept were [0 2]. 266s warnings.warn("Slicing across a celestial axis results " 266s 266s tests/test_projection.py: 1 warning 266s tests/test_spectral_cube.py: 35 warnings 266s /usr/lib/python3/dist-packages/spectral_cube/utils.py:61: PossiblySlowWarning: This function () requires loading the entire cube into memory and may therefore be slow. 266s warnings.warn("This function ({0}) requires loading the entire cube into " 266s 266s tests/test_projection.py: 1 warning 266s tests/test_spectral_cube.py: 22 warnings 266s /usr/lib/python3/dist-packages/spectral_cube/utils.py:61: PossiblySlowWarning: This function () requires loading the entire cube into memory and may therefore be slow. 266s warnings.warn("This function ({0}) requires loading the entire cube into " 266s 266s tests/test_projection.py: 1 warning 266s tests/test_spectral_cube.py: 11 warnings 266s /usr/lib/python3/dist-packages/spectral_cube/utils.py:61: PossiblySlowWarning: This function () requires loading the entire cube into memory and may therefore be slow. 266s warnings.warn("This function ({0}) requires loading the entire cube into " 266s 266s tests/test_regrid.py::test_spectral_smooth_4cores 266s tests/test_regrid.py::test_spectral_smooth_4cores 266s tests/test_regrid.py::test_spectral_smooth_4cores 266s tests/test_regrid.py::test_spectral_smooth_4cores 266s tests/test_regrid.py::test_spectral_smooth_4cores 266s /usr/lib/python3/dist-packages/joblib/externals/loky/backend/fork_exec.py:38: DeprecationWarning: This process (pid=3380) is multi-threaded, use of fork() may lead to deadlocks in the child. 266s pid = os.fork() 266s 266s tests/test_regrid.py::test_spectral_interpolate_varying_chunksize 266s tests/test_regrid.py::test_spectral_interpolate_rechunk_fail 266s /usr/lib/python3/dist-packages/numpy/_core/fromnumeric.py:3860: RuntimeWarning: Mean of empty slice. 266s return _methods._mean(a, axis=axis, dtype=dtype, 266s 266s tests/test_regrid.py::test_spectral_interpolate_varying_chunksize 266s tests/test_regrid.py::test_spectral_interpolate_rechunk_fail 266s /usr/lib/python3/dist-packages/numpy/_core/_methods.py:145: RuntimeWarning: invalid value encountered in scalar divide 266s ret = ret.dtype.type(ret / rcount) 266s 266s tests/test_spectral_axis.py: 12 warnings 266s /usr/lib/python3/dist-packages/astropy/wcs/wcs.py:805: FITSFixedWarning: 'datfix' made the change 'Set MJD-OBS to 51085.000000 from DATE-OBS. 266s Set DATE-AVG to '1998-09-29T23:29:45.600' from MJD-AVG'. 266s warnings.warn( 266s 266s tests/test_spectral_axis.py::test_byhand_awav2vel 266s tests/test_spectral_axis.py::test_byhand_awav2wav 266s tests/test_spectral_cube.py::test_airwave_to_wave[False] 266s tests/test_spectral_cube.py::test_airwave_to_wave[True] 266s /usr/lib/python3/dist-packages/spectral_cube/spectral_axis.py:287: ExperimentalImplementationWarning: Support for air wavelengths is experimental and only works in the forward direction (air->vac, not vac->air). 266s warnings.warn("Support for air wavelengths is experimental and only " 266s 266s tests/test_spectral_cube.py: 168 warnings 266s /usr/lib/python3/dist-packages/spectral_cube/wcs_utils.py:154: WCSWarning: Slicing across a celestial axis results in an invalid WCS, so the celestial projection (SIN) is being removed. The WCS indices being kept were [1 2]. 266s warnings.warn("Slicing across a celestial axis results " 266s 266s tests/test_spectral_cube.py: 32 warnings 266s /usr/lib/python3/dist-packages/spectral_cube/wcs_utils.py:250: WCSWarning: Slicing across a celestial axis results in an invalid WCS, so the celestial projection (SIN) is being removed. The view used was (slice(None, None, None), slice(None, None, None), 0). 266s warnings.warn("Slicing across a celestial axis results " 266s 266s tests/test_spectral_cube.py: 32 warnings 266s /usr/lib/python3/dist-packages/spectral_cube/wcs_utils.py:250: WCSWarning: Slicing across a celestial axis results in an invalid WCS, so the celestial projection (SIN) is being removed. The view used was (slice(None, None, None), 0, slice(None, None, None)). 266s warnings.warn("Slicing across a celestial axis results " 266s 266s tests/test_spectral_cube.py: 36 warnings 266s /usr/lib/python3/dist-packages/spectral_cube/wcs_utils.py:250: WCSWarning: Slicing across a celestial axis results in an invalid WCS, so the celestial projection (SIN) is being removed. The view used was (slice(None, None, None), slice(None, None, None), 1). 266s warnings.warn("Slicing across a celestial axis results " 266s 266s tests/test_spectral_cube.py: 38 warnings 266s /usr/lib/python3/dist-packages/spectral_cube/wcs_utils.py:250: WCSWarning: Slicing across a celestial axis results in an invalid WCS, so the celestial projection (SIN) is being removed. The view used was (slice(None, None, None), 1, slice(None, None, None)). 266s warnings.warn("Slicing across a celestial axis results " 266s 266s tests/test_spectral_cube.py::TestArithmetic::test_div_cubes[False] 266s tests/test_spectral_cube.py::TestArithmetic::test_div_cubes[True] 266s /usr/lib/python3/dist-packages/spectral_cube/tests/test_spectral_cube.py:526: RuntimeWarning: invalid value encountered in divide 266s d2 = self.d1 / self.d1 266s 266s tests/test_spectral_cube.py::TestArithmetic::test_div_cubes[False] 266s /usr/lib/python3/dist-packages/spectral_cube/spectral_cube.py:987: RuntimeWarning: invalid value encountered in divide 266s data = function(self._data, cube._data) 266s 266s tests/test_spectral_cube.py::TestArithmetic::test_div_cubes[True] 266s /usr/lib/python3/dist-packages/dask/_task_spec.py:745: RuntimeWarning: invalid value encountered in divide 266s return self.func(*new_argspec) 266s 266s tests/test_spectral_cube.py: 32 warnings 266s /usr/lib/python3/dist-packages/spectral_cube/tests/test_spectral_cube.py:621: RuntimeWarning: All-NaN slice encountered 266s expected = func(array, axis=axis) 266s 266s tests/test_spectral_cube.py: 18 warnings 266s /usr/lib/python3/dist-packages/spectral_cube/spectral_cube.py:436: RuntimeWarning: All-NaN slice encountered 266s out = function(self._get_filled_data(fill=fill, 266s 266s tests/test_spectral_cube.py: 11 warnings 266s /usr/lib/python3/dist-packages/spectral_cube/utils.py:61: PossiblySlowWarning: This function () requires loading the entire cube into memory and may therefore be slow. 266s warnings.warn("This function ({0}) requires loading the entire cube into " 266s 266s tests/test_spectral_cube.py: 11 warnings 266s /usr/lib/python3/dist-packages/spectral_cube/utils.py:61: PossiblySlowWarning: This function () requires loading the entire cube into memory and may therefore be slow. 266s warnings.warn("This function ({0}) requires loading the entire cube into " 266s 266s tests/test_spectral_cube.py::TestNumpyMethods::test_bad_median_apply[True] 266s tests/test_spectral_cube.py::TestNumpyMethods::test_bad_median[True-False] 266s /usr/lib/python3/dist-packages/dask/_task_spec.py:744: RuntimeWarning: All-NaN slice encountered 266s return self.func(*new_argspec, **kwargs) 266s 266s tests/test_spectral_cube.py: 19 warnings 266s /usr/lib/python3/dist-packages/spectral_cube/utils.py:61: PossiblySlowWarning: This function () requires loading the entire cube into memory and may therefore be slow. 266s warnings.warn("This function ({0}) requires loading the entire cube into " 266s 266s tests/test_spectral_cube.py::TestNumpyMethods::test_transpose[True-mad_std] 266s tests/test_spectral_cube.py::TestNumpyMethods::test_transpose[True-mad_std] 266s /usr/lib/python3/dist-packages/spectral_cube/dask_spectral_cube.py:76: PossiblySlowWarning: Dask requires loading the whole cube into memory for mad_std 266s calculations. This may result in slow computation. 266s warnings.warn(message=textwrap.dedent(f""" 266s 266s tests/test_spectral_cube.py: 16 warnings 266s tests/test_wcs_utils.py: 5 warnings 266s /usr/lib/python3/dist-packages/spectral_cube/wcs_utils.py:295: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) 266s wcs_new.wcs.crval[wcs_index] = crval 266s 266s tests/test_spectral_cube.py::test_varyres_moment[False] 266s tests/test_spectral_cube.py::test_varyres_moment[True] 266s tests/test_spectral_cube.py::test_varyres_moment_logic_issue364[False] 266s tests/test_spectral_cube.py::test_varyres_moment_logic_issue364[True] 266s /usr/lib/python3/dist-packages/radio_beam/multiple_beams.py:278: UserWarning: Do not use the average beam for convolution! Use the smallest common beam from `Beams.common_beam()`. 266s warnings.warn("Do not use the average beam for convolution! Use the" 266s 266s tests/test_spectral_cube.py::test_convolve_to_equal[False] 266s /usr/lib/python3/dist-packages/spectral_cube/spectral_cube.py:3362: UserWarning: The given beam is identical to the current beam. Skipping convolution. 266s warnings.warn("The given beam is identical to the current beam. " 266s 266s tests/test_spectral_cube.py::test_convolve_to_equal[False] 266s tests/test_spectral_cube.py::test_convolve_to_equal[True] 266s /usr/lib/python3/dist-packages/spectral_cube/lower_dimensional_structures.py:477: UserWarning: The given beam is identical to the current beam. Skipping convolution. 266s warnings.warn("The given beam is identical to the current beam. " 266s 266s tests/test_spectral_cube.py::test_convolve_to_equal[True] 266s /usr/lib/python3/dist-packages/spectral_cube/dask_spectral_cube.py:1425: UserWarning: The given beam is identical to the current beam. Skipping convolution. 266s warnings.warn("The given beam is identical to the current beam. " 266s 266s tests/test_spectral_cube.py::test_spatial_smooth_maxfilter[False-None] 266s tests/test_spectral_cube.py::test_spatial_smooth_maxfilter[False-1] 266s tests/test_spectral_cube.py::test_spatial_smooth_maxfilter[True-None] 266s tests/test_spectral_cube.py::test_spatial_smooth_maxfilter[True-1] 266s /usr/lib/python3/dist-packages/spectral_cube/tests/test_spectral_cube.py:2492: DeprecationWarning: Please import `maximum_filter` from the `scipy.ndimage` namespace; the `scipy.ndimage.filters` namespace is deprecated and will be removed in SciPy 2.0.0. 266s filter=ndimage.filters.maximum_filter, num_cores=num_cores) 266s 266s tests/test_spectral_cube.py::test_spatial_smooth_maxfilter[False-1] 266s tests/test_spectral_cube.py::test_spectral_smooth_maxfilter[False-1] 266s tests/test_spectral_cube.py::test_spectral_smooth_median[False-1] 266s /usr/lib/python3/dist-packages/spectral_cube/spectral_cube.py:2968: UserWarning: parallel=True was specified but num_cores=1. Joblib will be used to run the task with a single thread. 266s warnings.warn("parallel=True was specified but num_cores=1. " 266s 266s tests/test_spectral_cube.py::test_spectral_smooth_maxfilter[False-None] 266s tests/test_spectral_cube.py::test_spectral_smooth_maxfilter[False-1] 266s tests/test_spectral_cube.py::test_spectral_smooth_maxfilter[True-None] 266s tests/test_spectral_cube.py::test_spectral_smooth_maxfilter[True-1] 266s /usr/lib/python3/dist-packages/spectral_cube/tests/test_spectral_cube.py:2511: DeprecationWarning: Please import `maximum_filter` from the `scipy.ndimage` namespace; the `scipy.ndimage.filters` namespace is deprecated and will be removed in SciPy 2.0.0. 266s filter=ndimage.filters.maximum_filter, num_cores=num_cores) 266s 266s tests/test_spectral_cube.py::test_smooth_update_function_parallel 266s tests/test_spectral_cube.py::test_smooth_update_function_parallel 266s tests/test_spectral_cube.py::test_smooth_update_function_parallel 266s tests/test_spectral_cube.py::test_smooth_update_function_parallel 266s /usr/lib/python3.13/multiprocessing/popen_fork.py:67: DeprecationWarning: This process (pid=3380) is multi-threaded, use of fork() may lead to deadlocks in the child. 266s self.pid = os.fork() 266s 266s tests/test_spectral_cube.py::test_minimal_subcube[False] 266s /usr/lib/python3/dist-packages/scipy/ndimage/_measurements.py:308: DeprecationWarning: In future, it will be an error for 'np.bool' scalars to be interpreted as an index 266s return _nd_image.find_objects(input, max_label) 266s 266s tests/test_wcs_utils.py::test_strip_wcs[cubewcs2.hdr] 266s /usr/lib/python3/dist-packages/astropy/wcs/wcs.py:537: FITSFixedWarning: PC01_01 = 1 / 266s indices in parameterized keywords must not have leading zeroes. 266s wcsprm = _wcs.Wcsprm( 266s 266s tests/test_wcs_utils.py::test_strip_wcs[cubewcs2.hdr] 266s /usr/lib/python3/dist-packages/astropy/wcs/wcs.py:537: FITSFixedWarning: PC01_02 = 0 / 266s indices in parameterized keywords must not have leading zeroes. 266s wcsprm = _wcs.Wcsprm( 266s 266s tests/test_wcs_utils.py::test_strip_wcs[cubewcs2.hdr] 266s /usr/lib/python3/dist-packages/astropy/wcs/wcs.py:537: FITSFixedWarning: PC01_03 = 0 / 266s indices in parameterized keywords must not have leading zeroes. 266s wcsprm = _wcs.Wcsprm( 266s 266s tests/test_wcs_utils.py::test_strip_wcs[cubewcs2.hdr] 266s /usr/lib/python3/dist-packages/astropy/wcs/wcs.py:537: FITSFixedWarning: PC02_01 = 0 / 266s indices in parameterized keywords must not have leading zeroes. 266s wcsprm = _wcs.Wcsprm( 266s 266s tests/test_wcs_utils.py::test_strip_wcs[cubewcs2.hdr] 266s /usr/lib/python3/dist-packages/astropy/wcs/wcs.py:537: FITSFixedWarning: PC02_02 = 1 / 266s indices in parameterized keywords must not have leading zeroes. 266s wcsprm = _wcs.Wcsprm( 266s 266s tests/test_wcs_utils.py::test_strip_wcs[cubewcs2.hdr] 266s /usr/lib/python3/dist-packages/astropy/wcs/wcs.py:537: FITSFixedWarning: PC02_03 = 0 / 266s indices in parameterized keywords must not have leading zeroes. 266s wcsprm = _wcs.Wcsprm( 266s 266s tests/test_wcs_utils.py::test_strip_wcs[cubewcs2.hdr] 266s /usr/lib/python3/dist-packages/astropy/wcs/wcs.py:537: FITSFixedWarning: PC03_01 = 0 / 266s indices in parameterized keywords must not have leading zeroes. 266s wcsprm = _wcs.Wcsprm( 266s 266s tests/test_wcs_utils.py::test_strip_wcs[cubewcs2.hdr] 266s /usr/lib/python3/dist-packages/astropy/wcs/wcs.py:537: FITSFixedWarning: PC03_02 = 0 / 266s indices in parameterized keywords must not have leading zeroes. 266s wcsprm = _wcs.Wcsprm( 266s 266s tests/test_wcs_utils.py::test_strip_wcs[cubewcs2.hdr] 266s /usr/lib/python3/dist-packages/astropy/wcs/wcs.py:537: FITSFixedWarning: PC03_03 = 1 / 266s indices in parameterized keywords must not have leading zeroes. 266s wcsprm = _wcs.Wcsprm( 266s 266s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 266s = 1492 passed, 208 skipped, 17 xfailed, 2 xpassed, 5971 warnings in 198.02s (0:03:18) = 267s autopkgtest [07:09:55]: test command1: -----------------------] 268s command1 PASS 268s autopkgtest [07:09:56]: test command1: - - - - - - - - - - results - - - - - - - - - - 268s autopkgtest [07:09:56]: @@@@@@@@@@@@@@@@@@@@ summary 268s command1 PASS