0s autopkgtest [16:50:46]: starting date and time: 2026-01-24 16:50:46+0000 0s autopkgtest [16:50:46]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [16:50:46]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.3g5_eh_3/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults --apt-upgrade snakemake --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=python3-defaults/3.14.2-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-amd64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@sto01-14.secgroup --name adt-resolute-amd64-snakemake-20260124-165046-juju-7f2275-prod-proposed-migration-environment-2-2cfca7ad-5045-44c3-ac86-abaf244cce88 --image adt/ubuntu-resolute-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-autopkgtest-workers-amd64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 3s Creating nova instance adt-resolute-amd64-snakemake-20260124-165046-juju-7f2275-prod-proposed-migration-environment-2-2cfca7ad-5045-44c3-ac86-abaf244cce88 from image adt/ubuntu-resolute-amd64-server-20260124.img (UUID 46811f22-3700-43f4-953b-ee3c613d71bb)... 75s autopkgtest [16:52:01]: testbed dpkg architecture: amd64 75s autopkgtest [16:52:01]: testbed apt version: 3.1.13 75s autopkgtest [16:52:01]: @@@@@@@@@@@@@@@@@@@@ test bed setup 75s autopkgtest [16:52:01]: testbed release detected to be: None 76s autopkgtest [16:52:02]: updating testbed package index (apt update) 76s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 77s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 77s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 77s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 77s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [2820 B] 77s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [24.3 kB] 77s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [92.4 kB] 77s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [991 kB] 77s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main i386 Packages [96.9 kB] 77s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 Packages [113 kB] 77s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 c-n-f Metadata [3712 B] 77s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/restricted i386 Packages [3696 B] 78s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 Packages [12.3 kB] 78s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 c-n-f Metadata [336 B] 78s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 Packages [897 kB] 78s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/universe i386 Packages [378 kB] 78s Get:17 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 c-n-f Metadata [24.5 kB] 78s Get:18 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 Packages [12.4 kB] 78s Get:19 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse i386 Packages [4704 B] 78s Get:20 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 c-n-f Metadata [824 B] 79s Fetched 2781 kB in 2s (1639 kB/s) 79s Reading package lists... 79s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 80s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 80s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 80s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 80s Reading package lists... 80s Reading package lists... 80s Building dependency tree... 80s Reading state information... 80s Calculating upgrade... 80s The following packages were automatically installed and are no longer required: 80s python3.13 python3.13-minimal 80s Use 'sudo apt autoremove' to remove them. 80s The following NEW packages will be installed: 80s libpython3.14-minimal libpython3.14-stdlib python3.14 python3.14-minimal 80s The following packages will be upgraded: 80s libpython3-stdlib python3 python3-gdbm python3-minimal rust-coreutils 81s 5 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. 81s Need to get 10.4 MB of archives. 81s After this operation, 25.2 MB of additional disk space will be used. 81s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14-minimal amd64 3.14.2-1 [920 kB] 81s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 python3.14-minimal amd64 3.14.2-1 [2563 kB] 81s Get:3 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 python3-minimal amd64 3.14.2-1 [28.2 kB] 81s Get:4 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 python3 amd64 3.14.2-1 [22.9 kB] 81s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14-stdlib amd64 3.14.2-1 [2398 kB] 81s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 python3.14 amd64 3.14.2-1 [816 kB] 81s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libpython3-stdlib amd64 3.14.2-1 [10.9 kB] 81s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 rust-coreutils amd64 0.5.0-0ubuntu1 [3628 kB] 81s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 python3-gdbm amd64 3.14.2-1 [11.1 kB] 81s dpkg-preconfigure: unable to re-open stdin: No such file or directory 81s Fetched 10.4 MB in 1s (15.6 MB/s) 81s Selecting previously unselected package libpython3.14-minimal:amd64. 82s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 124177 files and directories currently installed.) 82s Preparing to unpack .../libpython3.14-minimal_3.14.2-1_amd64.deb ... 82s Unpacking libpython3.14-minimal:amd64 (3.14.2-1) ... 82s Selecting previously unselected package python3.14-minimal. 82s Preparing to unpack .../python3.14-minimal_3.14.2-1_amd64.deb ... 82s Unpacking python3.14-minimal (3.14.2-1) ... 82s Setting up libpython3.14-minimal:amd64 (3.14.2-1) ... 82s Setting up python3.14-minimal (3.14.2-1) ... 82s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 124519 files and directories currently installed.) 82s Preparing to unpack .../python3-minimal_3.14.2-1_amd64.deb ... 82s Unpacking python3-minimal (3.14.2-1) over (3.13.9-3) ... 82s Setting up python3-minimal (3.14.2-1) ... 82s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 124519 files and directories currently installed.) 82s Preparing to unpack .../python3_3.14.2-1_amd64.deb ... 83s running python pre-rtupdate hooks for python3.14... 83s Unpacking python3 (3.14.2-1) over (3.13.9-3) ... 83s Selecting previously unselected package libpython3.14-stdlib:amd64. 83s Preparing to unpack .../libpython3.14-stdlib_3.14.2-1_amd64.deb ... 83s Unpacking libpython3.14-stdlib:amd64 (3.14.2-1) ... 83s Selecting previously unselected package python3.14. 83s Preparing to unpack .../python3.14_3.14.2-1_amd64.deb ... 83s Unpacking python3.14 (3.14.2-1) ... 83s Preparing to unpack .../libpython3-stdlib_3.14.2-1_amd64.deb ... 83s Unpacking libpython3-stdlib:amd64 (3.14.2-1) over (3.13.9-3) ... 83s Preparing to unpack .../rust-coreutils_0.5.0-0ubuntu1_amd64.deb ... 83s Unpacking rust-coreutils (0.5.0-0ubuntu1) over (0.2.2-0ubuntu2) ... 83s Setting up rust-coreutils (0.5.0-0ubuntu1) ... 83s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 124980 files and directories currently installed.) 83s Preparing to unpack .../python3-gdbm_3.14.2-1_amd64.deb ... 83s Unpacking python3-gdbm (3.14.2-1) over (3.13.9-3) ... 83s Setting up libpython3.14-stdlib:amd64 (3.14.2-1) ... 83s Setting up python3.14 (3.14.2-1) ... 84s Setting up libpython3-stdlib:amd64 (3.14.2-1) ... 84s Setting up python3-gdbm (3.14.2-1) ... 84s Setting up python3 (3.14.2-1) ... 84s running python rtupdate hooks for python3.14... 84s running python post-rtupdate hooks for python3.14... 84s Processing triggers for man-db (2.13.1-1) ... 84s Processing triggers for systemd (259-1ubuntu2) ... 84s autopkgtest [16:52:10]: upgrading testbed (apt dist-upgrade and autopurge) 84s Reading package lists... 84s Building dependency tree... 84s Reading state information... 85s Calculating upgrade... 85s The following packages were automatically installed and are no longer required: 85s python3.13 python3.13-minimal 85s Use 'sudo apt autoremove' to remove them. 85s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 85s Reading package lists... 85s Building dependency tree... 85s Reading state information... 85s Solving dependencies... 85s The following packages will be REMOVED: 85s python3.13* python3.13-minimal* 85s 0 upgraded, 0 newly installed, 2 to remove and 0 not upgraded. 85s After this operation, 7860 kB disk space will be freed. 85s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 124978 files and directories currently installed.) 85s Removing python3.13 (3.13.11-1) ... 85s Removing python3.13-minimal (3.13.11-1) ... 86s Processing triggers for man-db (2.13.1-1) ... 86s Processing triggers for systemd (259-1ubuntu2) ... 86s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 124951 files and directories currently installed.) 86s Purging configuration files for python3.13-minimal (3.13.11-1) ... 88s autopkgtest [16:52:14]: testbed running kernel: Linux 6.18.0-9-generic #9-Ubuntu SMP PREEMPT_DYNAMIC Mon Jan 12 16:49:02 UTC 2026 88s autopkgtest [16:52:14]: @@@@@@@@@@@@@@@@@@@@ apt-source snakemake 90s Get:1 http://ftpmaster.internal/ubuntu resolute/universe snakemake 7.32.4-8.1 (dsc) [3330 B] 90s Get:2 http://ftpmaster.internal/ubuntu resolute/universe snakemake 7.32.4-8.1 (tar) [8886 kB] 90s Get:3 http://ftpmaster.internal/ubuntu resolute/universe snakemake 7.32.4-8.1 (diff) [29.9 kB] 90s gpgv: Signature made Mon Dec 29 15:32:14 2025 UTC 90s gpgv: using RSA key 406220C8B8552802378CCE411F5C7A8B45564314 90s gpgv: issuer "bage@debian.org" 90s gpgv: Can't check signature: No public key 90s dpkg-source: warning: cannot verify inline signature for ./snakemake_7.32.4-8.1.dsc: no acceptable signature found 90s autopkgtest [16:52:16]: testing package snakemake version 7.32.4-8.1 91s autopkgtest [16:52:17]: build not needed 93s autopkgtest [16:52:19]: test command1: preparing testbed 94s Reading package lists... 94s Building dependency tree... 94s Reading state information... 94s Solving dependencies... 94s The following NEW packages will be installed: 94s coinor-cbc coinor-libcbc3.1 coinor-libcgl1 coinor-libclp1 94s coinor-libcoinutils3v5 coinor-libosi1v5 docutils-common 94s fonts-glyphicons-halflings git git-man libblas3 libdatrie1 liberror-perl 94s libgfortran5 libjs-bootstrap libjs-jquery liblapack3 python3-configargparse 94s python3-connection-pool python3-datrie python3-decorator python3-docutils 94s python3-dpath python3-fastjsonschema python3-git python3-gitdb 94s python3-humanfriendly python3-jupyter-core python3-nbformat python3-plac 94s python3-platformdirs python3-psutil python3-pulp python3-retry 94s python3-roman-numerals python3-smart-open python3-smmap python3-stopit 94s python3-tabulate python3-throttler python3-toposort python3-traitlets 94s python3-wrapt python3-yte sgml-base snakemake xml-core 94s 0 upgraded, 47 newly installed, 0 to remove and 0 not upgraded. 94s Need to get 15.3 MB of archives. 94s After this operation, 61.7 MB of additional disk space will be used. 94s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas3 amd64 3.12.1-7ubuntu1 [260 kB] 94s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran5 amd64 15.2.0-11ubuntu1 [939 kB] 94s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 liblapack3 amd64 3.12.1-7ubuntu1 [2739 kB] 94s Get:4 http://ftpmaster.internal/ubuntu resolute/universe amd64 coinor-libcoinutils3v5 amd64 2.11.12+ds-1 [491 kB] 94s Get:5 http://ftpmaster.internal/ubuntu resolute/universe amd64 coinor-libosi1v5 amd64 0.108.11+ds-1 [291 kB] 94s Get:6 http://ftpmaster.internal/ubuntu resolute/universe amd64 coinor-libclp1 amd64 1.17.10+ds-1build1 [933 kB] 94s Get:7 http://ftpmaster.internal/ubuntu resolute/universe amd64 coinor-libcgl1 amd64 0.60.9+ds-1build1 [439 kB] 94s Get:8 http://ftpmaster.internal/ubuntu resolute/universe amd64 coinor-libcbc3.1 amd64 2.10.12+ds-1build1 [788 kB] 94s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 sgml-base all 1.31+nmu1 [11.0 kB] 94s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 xml-core all 0.19build1 [20.3 kB] 94s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 docutils-common all 0.22.4+dfsg-1 [130 kB] 94s Get:12 http://ftpmaster.internal/ubuntu resolute/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-6 [119 kB] 94s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 liberror-perl all 0.17030-1 [23.5 kB] 94s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 git-man all 1:2.51.0-1ubuntu1 [1179 kB] 94s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 git amd64 1:2.51.0-1ubuntu1 [4414 kB] 94s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 libdatrie1 amd64 0.2.14-1 [19.8 kB] 94s Get:17 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-bootstrap all 3.4.1+dfsg-6 [129 kB] 94s Get:18 http://ftpmaster.internal/ubuntu resolute/main amd64 libjs-jquery all 3.7.1+dfsg+~3.5.33-1build1 [321 kB] 94s Get:19 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-configargparse all 1.7-2 [31.7 kB] 94s Get:20 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-connection-pool all 0.0.3-2build1 [5792 B] 94s Get:21 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-datrie amd64 0.8.3-2 [207 kB] 94s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-decorator all 5.2.1-2 [28.1 kB] 94s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-roman-numerals all 4.1.0-1 [8660 B] 94s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-docutils all 0.22.4+dfsg-1 [439 kB] 94s Get:25 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-dpath all 2.2.0-2 [20.3 kB] 94s Get:26 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-fastjsonschema all 2.21.1-1 [20.4 kB] 94s Get:27 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-smmap all 6.0.0-1build1 [20.7 kB] 94s Get:28 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-gitdb all 4.0.12-1 [46.4 kB] 94s Get:29 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-git all 3.1.46-1 [149 kB] 94s Get:30 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-humanfriendly all 10.0-6build1 [70.9 kB] 94s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-platformdirs all 4.5.1-1 [17.1 kB] 94s Get:32 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-traitlets all 5.14.3+really5.14.3-2 [71.7 kB] 94s Get:33 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-jupyter-core all 5.9.1-1 [28.9 kB] 94s Get:34 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-nbformat all 5.10.4-1 [39.2 kB] 94s Get:35 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-plac all 1.4.3-2 [63.2 kB] 94s Get:36 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-psutil amd64 7.1.0-1ubuntu1 [191 kB] 94s Get:37 http://ftpmaster.internal/ubuntu resolute/universe amd64 coinor-cbc amd64 2.10.12+ds-1build1 [14.5 kB] 94s Get:38 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pulp all 2.7.0+dfsg-4 [71.4 kB] 94s Get:39 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-retry all 0.9.2-5 [6160 B] 94s Get:40 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-wrapt amd64 1.17.3-3 [40.5 kB] 94s Get:41 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-smart-open all 7.5.0-1 [56.9 kB] 94s Get:42 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-stopit all 1.1.2-3 [12.8 kB] 94s Get:43 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-tabulate all 0.9.0-1build1 [45.4 kB] 94s Get:44 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-throttler all 1.2.2-4ubuntu1 [7758 B] 94s Get:45 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-toposort all 1.10-2 [6348 B] 95s Get:46 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-yte all 1.5.4-1 [12.0 kB] 95s Get:47 http://ftpmaster.internal/ubuntu resolute/universe amd64 snakemake all 7.32.4-8.1 [275 kB] 95s Fetched 15.3 MB in 1s (21.7 MB/s) 95s Selecting previously unselected package libblas3:amd64. 95s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 124953 files and directories currently installed.) 95s Preparing to unpack .../00-libblas3_3.12.1-7ubuntu1_amd64.deb ... 95s Unpacking libblas3:amd64 (3.12.1-7ubuntu1) ... 95s Selecting previously unselected package libgfortran5:amd64. 95s Preparing to unpack .../01-libgfortran5_15.2.0-11ubuntu1_amd64.deb ... 95s Unpacking libgfortran5:amd64 (15.2.0-11ubuntu1) ... 95s Selecting previously unselected package liblapack3:amd64. 95s Preparing to unpack .../02-liblapack3_3.12.1-7ubuntu1_amd64.deb ... 95s Unpacking liblapack3:amd64 (3.12.1-7ubuntu1) ... 95s Selecting previously unselected package coinor-libcoinutils3v5:amd64. 95s Preparing to unpack .../03-coinor-libcoinutils3v5_2.11.12+ds-1_amd64.deb ... 95s Unpacking coinor-libcoinutils3v5:amd64 (2.11.12+ds-1) ... 95s Selecting previously unselected package coinor-libosi1v5:amd64. 95s Preparing to unpack .../04-coinor-libosi1v5_0.108.11+ds-1_amd64.deb ... 95s Unpacking coinor-libosi1v5:amd64 (0.108.11+ds-1) ... 95s Selecting previously unselected package coinor-libclp1:amd64. 95s Preparing to unpack .../05-coinor-libclp1_1.17.10+ds-1build1_amd64.deb ... 95s Unpacking coinor-libclp1:amd64 (1.17.10+ds-1build1) ... 95s Selecting previously unselected package coinor-libcgl1:amd64. 95s Preparing to unpack .../06-coinor-libcgl1_0.60.9+ds-1build1_amd64.deb ... 95s Unpacking coinor-libcgl1:amd64 (0.60.9+ds-1build1) ... 95s Selecting previously unselected package coinor-libcbc3.1:amd64. 95s Preparing to unpack .../07-coinor-libcbc3.1_2.10.12+ds-1build1_amd64.deb ... 95s Unpacking coinor-libcbc3.1:amd64 (2.10.12+ds-1build1) ... 95s Selecting previously unselected package sgml-base. 95s Preparing to unpack .../08-sgml-base_1.31+nmu1_all.deb ... 95s Unpacking sgml-base (1.31+nmu1) ... 95s Selecting previously unselected package xml-core. 95s Preparing to unpack .../09-xml-core_0.19build1_all.deb ... 95s Unpacking xml-core (0.19build1) ... 95s Selecting previously unselected package docutils-common. 95s Preparing to unpack .../10-docutils-common_0.22.4+dfsg-1_all.deb ... 95s Unpacking docutils-common (0.22.4+dfsg-1) ... 95s Selecting previously unselected package fonts-glyphicons-halflings. 95s Preparing to unpack .../11-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-6_all.deb ... 95s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-6) ... 95s Selecting previously unselected package liberror-perl. 95s Preparing to unpack .../12-liberror-perl_0.17030-1_all.deb ... 95s Unpacking liberror-perl (0.17030-1) ... 95s Selecting previously unselected package git-man. 95s Preparing to unpack .../13-git-man_1%3a2.51.0-1ubuntu1_all.deb ... 95s Unpacking git-man (1:2.51.0-1ubuntu1) ... 95s Selecting previously unselected package git. 95s Preparing to unpack .../14-git_1%3a2.51.0-1ubuntu1_amd64.deb ... 95s Unpacking git (1:2.51.0-1ubuntu1) ... 95s Selecting previously unselected package libdatrie1:amd64. 95s Preparing to unpack .../15-libdatrie1_0.2.14-1_amd64.deb ... 95s Unpacking libdatrie1:amd64 (0.2.14-1) ... 95s Selecting previously unselected package libjs-bootstrap. 95s Preparing to unpack .../16-libjs-bootstrap_3.4.1+dfsg-6_all.deb ... 95s Unpacking libjs-bootstrap (3.4.1+dfsg-6) ... 95s Selecting previously unselected package libjs-jquery. 95s Preparing to unpack .../17-libjs-jquery_3.7.1+dfsg+~3.5.33-1build1_all.deb ... 95s Unpacking libjs-jquery (3.7.1+dfsg+~3.5.33-1build1) ... 95s Selecting previously unselected package python3-configargparse. 95s Preparing to unpack .../18-python3-configargparse_1.7-2_all.deb ... 95s Unpacking python3-configargparse (1.7-2) ... 95s Selecting previously unselected package python3-connection-pool. 95s Preparing to unpack .../19-python3-connection-pool_0.0.3-2build1_all.deb ... 95s Unpacking python3-connection-pool (0.0.3-2build1) ... 95s Selecting previously unselected package python3-datrie. 95s Preparing to unpack .../20-python3-datrie_0.8.3-2_amd64.deb ... 95s Unpacking python3-datrie (0.8.3-2) ... 95s Selecting previously unselected package python3-decorator. 95s Preparing to unpack .../21-python3-decorator_5.2.1-2_all.deb ... 95s Unpacking python3-decorator (5.2.1-2) ... 95s Selecting previously unselected package python3-roman-numerals. 95s Preparing to unpack .../22-python3-roman-numerals_4.1.0-1_all.deb ... 95s Unpacking python3-roman-numerals (4.1.0-1) ... 95s Selecting previously unselected package python3-docutils. 95s Preparing to unpack .../23-python3-docutils_0.22.4+dfsg-1_all.deb ... 95s Unpacking python3-docutils (0.22.4+dfsg-1) ... 95s Selecting previously unselected package python3-dpath. 95s Preparing to unpack .../24-python3-dpath_2.2.0-2_all.deb ... 95s Unpacking python3-dpath (2.2.0-2) ... 95s Selecting previously unselected package python3-fastjsonschema. 95s Preparing to unpack .../25-python3-fastjsonschema_2.21.1-1_all.deb ... 95s Unpacking python3-fastjsonschema (2.21.1-1) ... 95s Selecting previously unselected package python3-smmap. 95s Preparing to unpack .../26-python3-smmap_6.0.0-1build1_all.deb ... 95s Unpacking python3-smmap (6.0.0-1build1) ... 95s Selecting previously unselected package python3-gitdb. 95s Preparing to unpack .../27-python3-gitdb_4.0.12-1_all.deb ... 95s Unpacking python3-gitdb (4.0.12-1) ... 95s Selecting previously unselected package python3-git. 95s Preparing to unpack .../28-python3-git_3.1.46-1_all.deb ... 95s Unpacking python3-git (3.1.46-1) ... 95s Selecting previously unselected package python3-humanfriendly. 95s Preparing to unpack .../29-python3-humanfriendly_10.0-6build1_all.deb ... 95s Unpacking python3-humanfriendly (10.0-6build1) ... 95s Selecting previously unselected package python3-platformdirs. 95s Preparing to unpack .../30-python3-platformdirs_4.5.1-1_all.deb ... 95s Unpacking python3-platformdirs (4.5.1-1) ... 95s Selecting previously unselected package python3-traitlets. 95s Preparing to unpack .../31-python3-traitlets_5.14.3+really5.14.3-2_all.deb ... 95s Unpacking python3-traitlets (5.14.3+really5.14.3-2) ... 95s Selecting previously unselected package python3-jupyter-core. 95s Preparing to unpack .../32-python3-jupyter-core_5.9.1-1_all.deb ... 95s Unpacking python3-jupyter-core (5.9.1-1) ... 95s Selecting previously unselected package python3-nbformat. 95s Preparing to unpack .../33-python3-nbformat_5.10.4-1_all.deb ... 95s Unpacking python3-nbformat (5.10.4-1) ... 95s Selecting previously unselected package python3-plac. 95s Preparing to unpack .../34-python3-plac_1.4.3-2_all.deb ... 95s Unpacking python3-plac (1.4.3-2) ... 95s Selecting previously unselected package python3-psutil. 95s Preparing to unpack .../35-python3-psutil_7.1.0-1ubuntu1_amd64.deb ... 95s Unpacking python3-psutil (7.1.0-1ubuntu1) ... 95s Selecting previously unselected package coinor-cbc. 95s Preparing to unpack .../36-coinor-cbc_2.10.12+ds-1build1_amd64.deb ... 95s Unpacking coinor-cbc (2.10.12+ds-1build1) ... 95s Selecting previously unselected package python3-pulp. 95s Preparing to unpack .../37-python3-pulp_2.7.0+dfsg-4_all.deb ... 95s Unpacking python3-pulp (2.7.0+dfsg-4) ... 95s Selecting previously unselected package python3-retry. 95s Preparing to unpack .../38-python3-retry_0.9.2-5_all.deb ... 95s Unpacking python3-retry (0.9.2-5) ... 95s Selecting previously unselected package python3-wrapt. 95s Preparing to unpack .../39-python3-wrapt_1.17.3-3_amd64.deb ... 95s Unpacking python3-wrapt (1.17.3-3) ... 95s Selecting previously unselected package python3-smart-open. 95s Preparing to unpack .../40-python3-smart-open_7.5.0-1_all.deb ... 95s Unpacking python3-smart-open (7.5.0-1) ... 95s Selecting previously unselected package python3-stopit. 95s Preparing to unpack .../41-python3-stopit_1.1.2-3_all.deb ... 95s Unpacking python3-stopit (1.1.2-3) ... 95s Selecting previously unselected package python3-tabulate. 95s Preparing to unpack .../42-python3-tabulate_0.9.0-1build1_all.deb ... 95s Unpacking python3-tabulate (0.9.0-1build1) ... 95s Selecting previously unselected package python3-throttler. 95s Preparing to unpack .../43-python3-throttler_1.2.2-4ubuntu1_all.deb ... 95s Unpacking python3-throttler (1.2.2-4ubuntu1) ... 95s Selecting previously unselected package python3-toposort. 96s Preparing to unpack .../44-python3-toposort_1.10-2_all.deb ... 96s Unpacking python3-toposort (1.10-2) ... 96s Selecting previously unselected package python3-yte. 96s Preparing to unpack .../45-python3-yte_1.5.4-1_all.deb ... 96s Unpacking python3-yte (1.5.4-1) ... 96s Selecting previously unselected package snakemake. 96s Preparing to unpack .../46-snakemake_7.32.4-8.1_all.deb ... 96s Unpacking snakemake (7.32.4-8.1) ... 96s Setting up python3-toposort (1.10-2) ... 96s Setting up python3-configargparse (1.7-2) ... 96s Setting up libdatrie1:amd64 (0.2.14-1) ... 96s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-6) ... 96s Setting up python3-tabulate (0.9.0-1build1) ... 96s Setting up python3-plac (1.4.3-2) ... 96s Setting up python3-platformdirs (4.5.1-1) ... 96s Setting up python3-psutil (7.1.0-1ubuntu1) ... 96s Setting up liberror-perl (0.17030-1) ... 96s Setting up python3-decorator (5.2.1-2) ... 96s Setting up libblas3:amd64 (3.12.1-7ubuntu1) ... 96s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 96s Setting up python3-humanfriendly (10.0-6build1) ... 96s /usr/lib/python3/dist-packages/humanfriendly/testing.py:546: SyntaxWarning: 'return' in a 'finally' block 96s return super(MockedProgram, self).__exit__(*args, **kw) 96s Setting up python3-dpath (2.2.0-2) ... 96s Setting up python3-connection-pool (0.0.3-2build1) ... 96s Setting up python3-wrapt (1.17.3-3) ... 97s Setting up python3-throttler (1.2.2-4ubuntu1) ... 97s Setting up python3-retry (0.9.2-5) ... 97s Setting up libgfortran5:amd64 (15.2.0-11ubuntu1) ... 97s Setting up python3-fastjsonschema (2.21.1-1) ... 97s Setting up python3-stopit (1.1.2-3) ... 97s Setting up python3-traitlets (5.14.3+really5.14.3-2) ... 97s Setting up python3-roman-numerals (4.1.0-1) ... 97s Setting up git-man (1:2.51.0-1ubuntu1) ... 97s Setting up sgml-base (1.31+nmu1) ... 97s Setting up python3-datrie (0.8.3-2) ... 97s Setting up libjs-jquery (3.7.1+dfsg+~3.5.33-1build1) ... 97s Setting up python3-smmap (6.0.0-1build1) ... 97s Setting up python3-jupyter-core (5.9.1-1) ... 97s Setting up libjs-bootstrap (3.4.1+dfsg-6) ... 97s Setting up liblapack3:amd64 (3.12.1-7ubuntu1) ... 97s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 97s Setting up python3-smart-open (7.5.0-1) ... 97s Setting up python3-nbformat (5.10.4-1) ... 97s Setting up python3-gitdb (4.0.12-1) ... 97s Setting up python3-yte (1.5.4-1) ... 98s Setting up coinor-libcoinutils3v5:amd64 (2.11.12+ds-1) ... 98s Setting up git (1:2.51.0-1ubuntu1) ... 98s Setting up coinor-libosi1v5:amd64 (0.108.11+ds-1) ... 98s Setting up xml-core (0.19build1) ... 98s Setting up coinor-libclp1:amd64 (1.17.10+ds-1build1) ... 98s Setting up python3-git (3.1.46-1) ... 98s Setting up coinor-libcgl1:amd64 (0.60.9+ds-1build1) ... 98s Setting up coinor-libcbc3.1:amd64 (2.10.12+ds-1build1) ... 98s Setting up coinor-cbc (2.10.12+ds-1build1) ... 98s Setting up python3-pulp (2.7.0+dfsg-4) ... 98s /usr/lib/python3/dist-packages/pulp/apis/xpress_api.py:325: SyntaxWarning: "\ " is an invalid escape sequence. Such sequences will not work in the future. Did you mean "\\ "? A raw string is also an option. 98s otherwise be interpreted by the Tcl shell: \ $ " [ 98s Processing triggers for libc-bin (2.42-2ubuntu4) ... 98s Processing triggers for man-db (2.13.1-1) ... 99s Processing triggers for sgml-base (1.31+nmu1) ... 99s Setting up docutils-common (0.22.4+dfsg-1) ... 99s Processing triggers for sgml-base (1.31+nmu1) ... 99s Setting up python3-docutils (0.22.4+dfsg-1) ... 99s Setting up snakemake (7.32.4-8.1) ... 100s autopkgtest [16:52:26]: test command1: cp tests/test_bash/Snakefile $AUTOPKGTEST_TMP && cd $AUTOPKGTEST_TMP && snakemake --cores 1 && grep -e bash test.out 100s autopkgtest [16:52:26]: test command1: [----------------------- 101s Building DAG of jobs... 101s Using shell: /usr/bin/bash 101s Provided cores: 1 (use --cores to define parallelism) 101s Rules claiming more threads will be scaled down. 101s Job stats: 101s job count 101s ----- ------- 101s a 1 101s total 1 101s 101s Select jobs to execute... 101s 101s [Sat Jan 24 16:52:26 2026] 101s rule a: 101s output: test.out 101s jobid: 0 101s reason: Missing output files: test.out 101s resources: tmpdir=/tmp 101s 101s [Sat Jan 24 16:52:26 2026] 101s Finished job 0. 101s 1 of 1 steps (100%) done 101s Complete log: .snakemake/log/2026-01-24T165226.131528.snakemake.log 101s bash 101s autopkgtest [16:52:27]: test command1: -----------------------] 101s autopkgtest [16:52:27]: test command1: - - - - - - - - - - results - - - - - - - - - - 101s command1 PASS 102s autopkgtest [16:52:28]: test run-unit-test: preparing testbed 102s Reading package lists... 102s Building dependency tree... 102s Reading state information... 102s Solving dependencies... 102s The following NEW packages will be installed: 102s environment-modules fontconfig fontconfig-config fonts-dejavu-core 102s fonts-dejavu-mono glpk-utils graphviz libamd3 libaom3 libcairo2 libcdt6 102s libcgraph8 libcolamd3 libde265-0 libdeflate0 libfontconfig1 libgd3 libglpk40 102s libgomp1 libgraphite2-3 libgvc7 libgvplugin-gd8 libgvplugin-pango8 libgvpr2 102s libharfbuzz0b libheif-plugin-aomdec libheif-plugin-libde265 libheif1 libice6 102s libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 liblerc4 libltdl7 102s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 102s libpaper2 libpathplan4 libpixman-1-0 libsharpyuv0 libsm6 102s libsuitesparseconfig7 libtcl8.6 libthai-data libthai0 libtiff6 libtk8.6 102s libwebp7 libxcb-render0 libxcb-shm0 libxdot4 libxft2 libxpm4 libxrender1 102s libxss1 libxt6t64 python3-ftputil python3-iniconfig python3-numpy 102s python3-numpy-dev python3-pandas python3-pandas-lib python3-pluggy 102s python3-pytest python3-pytest-mock python3-pytz python3-requests-mock 102s r-base-core stress tcl8.6 unzip x11-common xdg-utils zip 102s 0 upgraded, 77 newly installed, 0 to remove and 0 not upgraded. 102s Need to get 59.6 MB of archives. 102s After this operation, 196 MB of additional disk space will be used. 102s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-numpy-dev amd64 1:2.3.5+ds-3 [147 kB] 102s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-numpy amd64 1:2.3.5+ds-3 [8129 kB] 103s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 libtcl8.6 amd64 8.6.17+dfsg-1 [1036 kB] 103s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 tcl8.6 amd64 8.6.17+dfsg-1 [15.0 kB] 103s Get:5 http://ftpmaster.internal/ubuntu resolute/universe amd64 environment-modules amd64 5.6.1-1 [365 kB] 103s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-mono all 2.37-8build1 [502 kB] 103s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-core all 2.37-8build1 [834 kB] 103s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig-config amd64 2.17.1-3ubuntu1 [38.5 kB] 103s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 libfontconfig1 amd64 2.17.1-3ubuntu1 [144 kB] 103s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig amd64 2.17.1-3ubuntu1 [180 kB] 103s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 libgomp1 amd64 15.2.0-11ubuntu1 [151 kB] 103s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 libsuitesparseconfig7 amd64 1:7.12.1+dfsg-1 [22.0 kB] 103s Get:13 http://ftpmaster.internal/ubuntu resolute/universe amd64 libamd3 amd64 1:7.12.1+dfsg-1 [35.8 kB] 103s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 libcolamd3 amd64 1:7.12.1+dfsg-1 [27.4 kB] 103s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 libltdl7 amd64 2.5.4-9 [43.7 kB] 103s Get:16 http://ftpmaster.internal/ubuntu resolute/universe amd64 libglpk40 amd64 5.0-2 [380 kB] 103s Get:17 http://ftpmaster.internal/ubuntu resolute/universe amd64 glpk-utils amd64 5.0-2 [227 kB] 103s Get:18 http://ftpmaster.internal/ubuntu resolute/universe amd64 libcdt6 amd64 14.1.1-2ubuntu2 [20.1 kB] 103s Get:19 http://ftpmaster.internal/ubuntu resolute/universe amd64 libcgraph8 amd64 14.1.1-2ubuntu2 [55.3 kB] 103s Get:20 http://ftpmaster.internal/ubuntu resolute/universe amd64 libpathplan4 amd64 14.1.1-2ubuntu2 [26.3 kB] 103s Get:21 http://ftpmaster.internal/ubuntu resolute/universe amd64 libxdot4 amd64 14.1.1-2ubuntu2 [23.5 kB] 103s Get:22 http://ftpmaster.internal/ubuntu resolute/universe amd64 libgvc7 amd64 14.1.1-2ubuntu2 [397 kB] 103s Get:23 http://ftpmaster.internal/ubuntu resolute/universe amd64 libgvpr2 amd64 14.1.1-2ubuntu2 [128 kB] 103s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 libpixman-1-0 amd64 0.46.4-1 [287 kB] 103s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-render0 amd64 1.17.0-2build1 [17.4 kB] 103s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-shm0 amd64 1.17.0-2build1 [6120 B] 103s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 libxrender1 amd64 1:0.9.12-1 [19.8 kB] 103s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 libcairo2 amd64 1.18.4-3 [579 kB] 103s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 libsharpyuv0 amd64 1.5.0-0.1build1 [17.6 kB] 103s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 libaom3 amd64 3.13.1-2 [1970 kB] 103s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 libheif-plugin-aomdec amd64 1.21.2-1 [14.2 kB] 103s Get:32 http://ftpmaster.internal/ubuntu resolute/main amd64 libde265-0 amd64 1.0.16-1build1 [172 kB] 103s Get:33 http://ftpmaster.internal/ubuntu resolute/main amd64 libheif-plugin-libde265 amd64 1.21.2-1 [9978 B] 103s Get:34 http://ftpmaster.internal/ubuntu resolute/main amd64 libheif1 amd64 1.21.2-1 [544 kB] 103s Get:35 http://ftpmaster.internal/ubuntu resolute/main amd64 libimagequant0 amd64 2.18.0-1build1 [36.3 kB] 103s Get:36 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-turbo8 amd64 2.1.5-4ubuntu2 [152 kB] 103s Get:37 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 103s Get:38 http://ftpmaster.internal/ubuntu resolute/main amd64 libdeflate0 amd64 1.23-2 [49.9 kB] 103s Get:39 http://ftpmaster.internal/ubuntu resolute/main amd64 libjbig0 amd64 2.1-6.1ubuntu3 [30.0 kB] 103s Get:40 http://ftpmaster.internal/ubuntu resolute/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu2 [207 kB] 103s Get:41 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebp7 amd64 1.5.0-0.1build1 [264 kB] 103s Get:42 http://ftpmaster.internal/ubuntu resolute/main amd64 libtiff6 amd64 4.7.0-3ubuntu3 [209 kB] 103s Get:43 http://ftpmaster.internal/ubuntu resolute/main amd64 libxpm4 amd64 1:3.5.17-1build3 [37.3 kB] 103s Get:44 http://ftpmaster.internal/ubuntu resolute/main amd64 libgd3 amd64 2.3.3-13ubuntu1 [130 kB] 103s Get:45 http://ftpmaster.internal/ubuntu resolute/universe amd64 libgvplugin-gd8 amd64 14.1.1-2ubuntu2 [25.5 kB] 103s Get:46 http://ftpmaster.internal/ubuntu resolute/main amd64 libgraphite2-3 amd64 1.3.14-11ubuntu1 [73.7 kB] 103s Get:47 http://ftpmaster.internal/ubuntu resolute/main amd64 libharfbuzz0b amd64 12.3.0-4 [529 kB] 103s Get:48 http://ftpmaster.internal/ubuntu resolute/main amd64 libthai-data all 0.1.30-1 [155 kB] 103s Get:49 http://ftpmaster.internal/ubuntu resolute/main amd64 libthai0 amd64 0.1.30-1 [19.2 kB] 103s Get:50 http://ftpmaster.internal/ubuntu resolute/main amd64 libpango-1.0-0 amd64 1.56.4-1 [240 kB] 103s Get:51 http://ftpmaster.internal/ubuntu resolute/main amd64 libpangoft2-1.0-0 amd64 1.56.4-1 [53.2 kB] 103s Get:52 http://ftpmaster.internal/ubuntu resolute/main amd64 libpangocairo-1.0-0 amd64 1.56.4-1 [29.0 kB] 103s Get:53 http://ftpmaster.internal/ubuntu resolute/universe amd64 libgvplugin-pango8 amd64 14.1.1-2ubuntu2 [24.6 kB] 103s Get:54 http://ftpmaster.internal/ubuntu resolute/universe amd64 graphviz amd64 14.1.1-2ubuntu2 [58.5 kB] 103s Get:55 http://ftpmaster.internal/ubuntu resolute/main amd64 x11-common all 1:7.7+24ubuntu1 [22.4 kB] 103s Get:56 http://ftpmaster.internal/ubuntu resolute/main amd64 libice6 amd64 2:1.1.1-1build1 [44.0 kB] 103s Get:57 http://ftpmaster.internal/ubuntu resolute/main amd64 libpaper2 amd64 2.2.5-0.3build1 [17.3 kB] 103s Get:58 http://ftpmaster.internal/ubuntu resolute/main amd64 libpaper-utils amd64 2.2.5-0.3build1 [15.6 kB] 103s Get:59 http://ftpmaster.internal/ubuntu resolute/main amd64 libsm6 amd64 2:1.2.6-1 [16.4 kB] 103s Get:60 http://ftpmaster.internal/ubuntu resolute/main amd64 libxft2 amd64 2.3.6-1build2 [45.1 kB] 103s Get:61 http://ftpmaster.internal/ubuntu resolute/main amd64 libxss1 amd64 1:1.2.3-1build4 [7084 B] 103s Get:62 http://ftpmaster.internal/ubuntu resolute/main amd64 libtk8.6 amd64 8.6.17-1 [823 kB] 103s Get:63 http://ftpmaster.internal/ubuntu resolute/main amd64 libxt6t64 amd64 1:1.2.1-1.3 [173 kB] 103s Get:64 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-ftputil all 5.1.0-1build1 [41.3 kB] 103s Get:65 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-iniconfig all 2.1.0-2 [6962 B] 103s Get:66 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pytz all 2025.2-5 [32.4 kB] 103s Get:67 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pandas-lib amd64 2.3.3+dfsg-3 [6929 kB] 103s Get:68 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pandas all 2.3.3+dfsg-3 [2948 kB] 103s Get:69 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pluggy all 1.6.0-2 [21.1 kB] 103s Get:70 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pytest all 9.0.2-2 [277 kB] 103s Get:71 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pytest-mock all 3.15.1-1 [11.9 kB] 103s Get:72 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-requests-mock all 1.12.1-4 [17.9 kB] 103s Get:73 http://ftpmaster.internal/ubuntu resolute/main amd64 zip amd64 3.0-15ubuntu2 [178 kB] 103s Get:74 http://ftpmaster.internal/ubuntu resolute/main amd64 unzip amd64 6.0-29ubuntu1 [180 kB] 103s Get:75 http://ftpmaster.internal/ubuntu resolute/main amd64 xdg-utils all 1.2.1-2ubuntu2 [66.1 kB] 103s Get:76 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-base-core amd64 4.5.2-1ubuntu2 [28.8 MB] 104s Get:77 http://ftpmaster.internal/ubuntu resolute/universe amd64 stress amd64 1.0.7-2 [18.2 kB] 104s Preconfiguring packages ... 104s Fetched 59.6 MB in 2s (36.4 MB/s) 104s Selecting previously unselected package python3-numpy-dev:amd64. 104s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 127517 files and directories currently installed.) 104s Preparing to unpack .../00-python3-numpy-dev_1%3a2.3.5+ds-3_amd64.deb ... 104s Unpacking python3-numpy-dev:amd64 (1:2.3.5+ds-3) ... 104s Selecting previously unselected package python3-numpy. 104s Preparing to unpack .../01-python3-numpy_1%3a2.3.5+ds-3_amd64.deb ... 104s Unpacking python3-numpy (1:2.3.5+ds-3) ... 104s Selecting previously unselected package libtcl8.6:amd64. 104s Preparing to unpack .../02-libtcl8.6_8.6.17+dfsg-1_amd64.deb ... 104s Unpacking libtcl8.6:amd64 (8.6.17+dfsg-1) ... 104s Selecting previously unselected package tcl8.6. 104s Preparing to unpack .../03-tcl8.6_8.6.17+dfsg-1_amd64.deb ... 104s Unpacking tcl8.6 (8.6.17+dfsg-1) ... 104s Selecting previously unselected package environment-modules. 104s Preparing to unpack .../04-environment-modules_5.6.1-1_amd64.deb ... 104s Unpacking environment-modules (5.6.1-1) ... 104s Selecting previously unselected package fonts-dejavu-mono. 104s Preparing to unpack .../05-fonts-dejavu-mono_2.37-8build1_all.deb ... 104s Unpacking fonts-dejavu-mono (2.37-8build1) ... 104s Selecting previously unselected package fonts-dejavu-core. 104s Preparing to unpack .../06-fonts-dejavu-core_2.37-8build1_all.deb ... 104s Unpacking fonts-dejavu-core (2.37-8build1) ... 104s Selecting previously unselected package fontconfig-config. 104s Preparing to unpack .../07-fontconfig-config_2.17.1-3ubuntu1_amd64.deb ... 104s Unpacking fontconfig-config (2.17.1-3ubuntu1) ... 104s Selecting previously unselected package libfontconfig1:amd64. 104s Preparing to unpack .../08-libfontconfig1_2.17.1-3ubuntu1_amd64.deb ... 104s Unpacking libfontconfig1:amd64 (2.17.1-3ubuntu1) ... 104s Selecting previously unselected package fontconfig. 104s Preparing to unpack .../09-fontconfig_2.17.1-3ubuntu1_amd64.deb ... 104s Unpacking fontconfig (2.17.1-3ubuntu1) ... 105s Selecting previously unselected package libgomp1:amd64. 105s Preparing to unpack .../10-libgomp1_15.2.0-11ubuntu1_amd64.deb ... 105s Unpacking libgomp1:amd64 (15.2.0-11ubuntu1) ... 105s Selecting previously unselected package libsuitesparseconfig7:amd64. 105s Preparing to unpack .../11-libsuitesparseconfig7_1%3a7.12.1+dfsg-1_amd64.deb ... 105s Unpacking libsuitesparseconfig7:amd64 (1:7.12.1+dfsg-1) ... 105s Selecting previously unselected package libamd3:amd64. 105s Preparing to unpack .../12-libamd3_1%3a7.12.1+dfsg-1_amd64.deb ... 105s Unpacking libamd3:amd64 (1:7.12.1+dfsg-1) ... 105s Selecting previously unselected package libcolamd3:amd64. 105s Preparing to unpack .../13-libcolamd3_1%3a7.12.1+dfsg-1_amd64.deb ... 105s Unpacking libcolamd3:amd64 (1:7.12.1+dfsg-1) ... 105s Selecting previously unselected package libltdl7:amd64. 105s Preparing to unpack .../14-libltdl7_2.5.4-9_amd64.deb ... 105s Unpacking libltdl7:amd64 (2.5.4-9) ... 105s Selecting previously unselected package libglpk40:amd64. 105s Preparing to unpack .../15-libglpk40_5.0-2_amd64.deb ... 105s Unpacking libglpk40:amd64 (5.0-2) ... 105s Selecting previously unselected package glpk-utils. 105s Preparing to unpack .../16-glpk-utils_5.0-2_amd64.deb ... 105s Unpacking glpk-utils (5.0-2) ... 105s Selecting previously unselected package libcdt6:amd64. 105s Preparing to unpack .../17-libcdt6_14.1.1-2ubuntu2_amd64.deb ... 105s Unpacking libcdt6:amd64 (14.1.1-2ubuntu2) ... 105s Selecting previously unselected package libcgraph8:amd64. 105s Preparing to unpack .../18-libcgraph8_14.1.1-2ubuntu2_amd64.deb ... 105s Unpacking libcgraph8:amd64 (14.1.1-2ubuntu2) ... 105s Selecting previously unselected package libpathplan4:amd64. 105s Preparing to unpack .../19-libpathplan4_14.1.1-2ubuntu2_amd64.deb ... 105s Unpacking libpathplan4:amd64 (14.1.1-2ubuntu2) ... 105s Selecting previously unselected package libxdot4:amd64. 105s Preparing to unpack .../20-libxdot4_14.1.1-2ubuntu2_amd64.deb ... 105s Unpacking libxdot4:amd64 (14.1.1-2ubuntu2) ... 105s Selecting previously unselected package libgvc7:amd64. 105s Preparing to unpack .../21-libgvc7_14.1.1-2ubuntu2_amd64.deb ... 105s Unpacking libgvc7:amd64 (14.1.1-2ubuntu2) ... 105s Selecting previously unselected package libgvpr2:amd64. 105s Preparing to unpack .../22-libgvpr2_14.1.1-2ubuntu2_amd64.deb ... 105s Unpacking libgvpr2:amd64 (14.1.1-2ubuntu2) ... 105s Selecting previously unselected package libpixman-1-0:amd64. 105s Preparing to unpack .../23-libpixman-1-0_0.46.4-1_amd64.deb ... 105s Unpacking libpixman-1-0:amd64 (0.46.4-1) ... 105s Selecting previously unselected package libxcb-render0:amd64. 105s Preparing to unpack .../24-libxcb-render0_1.17.0-2build1_amd64.deb ... 105s Unpacking libxcb-render0:amd64 (1.17.0-2build1) ... 105s Selecting previously unselected package libxcb-shm0:amd64. 105s Preparing to unpack .../25-libxcb-shm0_1.17.0-2build1_amd64.deb ... 105s Unpacking libxcb-shm0:amd64 (1.17.0-2build1) ... 105s Selecting previously unselected package libxrender1:amd64. 105s Preparing to unpack .../26-libxrender1_1%3a0.9.12-1_amd64.deb ... 105s Unpacking libxrender1:amd64 (1:0.9.12-1) ... 105s Selecting previously unselected package libcairo2:amd64. 105s Preparing to unpack .../27-libcairo2_1.18.4-3_amd64.deb ... 105s Unpacking libcairo2:amd64 (1.18.4-3) ... 105s Selecting previously unselected package libsharpyuv0:amd64. 105s Preparing to unpack .../28-libsharpyuv0_1.5.0-0.1build1_amd64.deb ... 105s Unpacking libsharpyuv0:amd64 (1.5.0-0.1build1) ... 105s Selecting previously unselected package libaom3:amd64. 105s Preparing to unpack .../29-libaom3_3.13.1-2_amd64.deb ... 105s Unpacking libaom3:amd64 (3.13.1-2) ... 105s Selecting previously unselected package libheif-plugin-aomdec:amd64. 105s Preparing to unpack .../30-libheif-plugin-aomdec_1.21.2-1_amd64.deb ... 105s Unpacking libheif-plugin-aomdec:amd64 (1.21.2-1) ... 105s Selecting previously unselected package libde265-0:amd64. 105s Preparing to unpack .../31-libde265-0_1.0.16-1build1_amd64.deb ... 105s Unpacking libde265-0:amd64 (1.0.16-1build1) ... 105s Selecting previously unselected package libheif-plugin-libde265:amd64. 105s Preparing to unpack .../32-libheif-plugin-libde265_1.21.2-1_amd64.deb ... 105s Unpacking libheif-plugin-libde265:amd64 (1.21.2-1) ... 105s Selecting previously unselected package libheif1:amd64. 105s Preparing to unpack .../33-libheif1_1.21.2-1_amd64.deb ... 105s Unpacking libheif1:amd64 (1.21.2-1) ... 105s Selecting previously unselected package libimagequant0:amd64. 105s Preparing to unpack .../34-libimagequant0_2.18.0-1build1_amd64.deb ... 105s Unpacking libimagequant0:amd64 (2.18.0-1build1) ... 105s Selecting previously unselected package libjpeg-turbo8:amd64. 105s Preparing to unpack .../35-libjpeg-turbo8_2.1.5-4ubuntu2_amd64.deb ... 105s Unpacking libjpeg-turbo8:amd64 (2.1.5-4ubuntu2) ... 105s Selecting previously unselected package libjpeg8:amd64. 105s Preparing to unpack .../36-libjpeg8_8c-2ubuntu11_amd64.deb ... 105s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 105s Selecting previously unselected package libdeflate0:amd64. 105s Preparing to unpack .../37-libdeflate0_1.23-2_amd64.deb ... 105s Unpacking libdeflate0:amd64 (1.23-2) ... 105s Selecting previously unselected package libjbig0:amd64. 105s Preparing to unpack .../38-libjbig0_2.1-6.1ubuntu3_amd64.deb ... 105s Unpacking libjbig0:amd64 (2.1-6.1ubuntu3) ... 105s Selecting previously unselected package liblerc4:amd64. 105s Preparing to unpack .../39-liblerc4_4.0.0+ds-5ubuntu2_amd64.deb ... 105s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu2) ... 105s Selecting previously unselected package libwebp7:amd64. 105s Preparing to unpack .../40-libwebp7_1.5.0-0.1build1_amd64.deb ... 105s Unpacking libwebp7:amd64 (1.5.0-0.1build1) ... 105s Selecting previously unselected package libtiff6:amd64. 105s Preparing to unpack .../41-libtiff6_4.7.0-3ubuntu3_amd64.deb ... 105s Unpacking libtiff6:amd64 (4.7.0-3ubuntu3) ... 105s Selecting previously unselected package libxpm4:amd64. 105s Preparing to unpack .../42-libxpm4_1%3a3.5.17-1build3_amd64.deb ... 105s Unpacking libxpm4:amd64 (1:3.5.17-1build3) ... 105s Selecting previously unselected package libgd3:amd64. 105s Preparing to unpack .../43-libgd3_2.3.3-13ubuntu1_amd64.deb ... 105s Unpacking libgd3:amd64 (2.3.3-13ubuntu1) ... 105s Selecting previously unselected package libgvplugin-gd8:amd64. 105s Preparing to unpack .../44-libgvplugin-gd8_14.1.1-2ubuntu2_amd64.deb ... 105s Unpacking libgvplugin-gd8:amd64 (14.1.1-2ubuntu2) ... 105s Selecting previously unselected package libgraphite2-3:amd64. 105s Preparing to unpack .../45-libgraphite2-3_1.3.14-11ubuntu1_amd64.deb ... 105s Unpacking libgraphite2-3:amd64 (1.3.14-11ubuntu1) ... 105s Selecting previously unselected package libharfbuzz0b:amd64. 105s Preparing to unpack .../46-libharfbuzz0b_12.3.0-4_amd64.deb ... 105s Unpacking libharfbuzz0b:amd64 (12.3.0-4) ... 105s Selecting previously unselected package libthai-data. 105s Preparing to unpack .../47-libthai-data_0.1.30-1_all.deb ... 105s Unpacking libthai-data (0.1.30-1) ... 105s Selecting previously unselected package libthai0:amd64. 105s Preparing to unpack .../48-libthai0_0.1.30-1_amd64.deb ... 105s Unpacking libthai0:amd64 (0.1.30-1) ... 105s Selecting previously unselected package libpango-1.0-0:amd64. 105s Preparing to unpack .../49-libpango-1.0-0_1.56.4-1_amd64.deb ... 105s Unpacking libpango-1.0-0:amd64 (1.56.4-1) ... 105s Selecting previously unselected package libpangoft2-1.0-0:amd64. 105s Preparing to unpack .../50-libpangoft2-1.0-0_1.56.4-1_amd64.deb ... 105s Unpacking libpangoft2-1.0-0:amd64 (1.56.4-1) ... 105s Selecting previously unselected package libpangocairo-1.0-0:amd64. 105s Preparing to unpack .../51-libpangocairo-1.0-0_1.56.4-1_amd64.deb ... 105s Unpacking libpangocairo-1.0-0:amd64 (1.56.4-1) ... 105s Selecting previously unselected package libgvplugin-pango8:amd64. 105s Preparing to unpack .../52-libgvplugin-pango8_14.1.1-2ubuntu2_amd64.deb ... 105s Unpacking libgvplugin-pango8:amd64 (14.1.1-2ubuntu2) ... 105s Selecting previously unselected package graphviz. 105s Preparing to unpack .../53-graphviz_14.1.1-2ubuntu2_amd64.deb ... 105s Unpacking graphviz (14.1.1-2ubuntu2) ... 105s Selecting previously unselected package x11-common. 105s Preparing to unpack .../54-x11-common_1%3a7.7+24ubuntu1_all.deb ... 105s Unpacking x11-common (1:7.7+24ubuntu1) ... 105s Selecting previously unselected package libice6:amd64. 105s Preparing to unpack .../55-libice6_2%3a1.1.1-1build1_amd64.deb ... 105s Unpacking libice6:amd64 (2:1.1.1-1build1) ... 105s Selecting previously unselected package libpaper2:amd64. 105s Preparing to unpack .../56-libpaper2_2.2.5-0.3build1_amd64.deb ... 105s Unpacking libpaper2:amd64 (2.2.5-0.3build1) ... 105s Selecting previously unselected package libpaper-utils. 105s Preparing to unpack .../57-libpaper-utils_2.2.5-0.3build1_amd64.deb ... 105s Unpacking libpaper-utils (2.2.5-0.3build1) ... 105s Selecting previously unselected package libsm6:amd64. 105s Preparing to unpack .../58-libsm6_2%3a1.2.6-1_amd64.deb ... 105s Unpacking libsm6:amd64 (2:1.2.6-1) ... 105s Selecting previously unselected package libxft2:amd64. 105s Preparing to unpack .../59-libxft2_2.3.6-1build2_amd64.deb ... 105s Unpacking libxft2:amd64 (2.3.6-1build2) ... 105s Selecting previously unselected package libxss1:amd64. 105s Preparing to unpack .../60-libxss1_1%3a1.2.3-1build4_amd64.deb ... 105s Unpacking libxss1:amd64 (1:1.2.3-1build4) ... 105s Selecting previously unselected package libtk8.6:amd64. 105s Preparing to unpack .../61-libtk8.6_8.6.17-1_amd64.deb ... 105s Unpacking libtk8.6:amd64 (8.6.17-1) ... 105s Selecting previously unselected package libxt6t64:amd64. 105s Preparing to unpack .../62-libxt6t64_1%3a1.2.1-1.3_amd64.deb ... 105s Unpacking libxt6t64:amd64 (1:1.2.1-1.3) ... 105s Selecting previously unselected package python3-ftputil. 105s Preparing to unpack .../63-python3-ftputil_5.1.0-1build1_all.deb ... 105s Unpacking python3-ftputil (5.1.0-1build1) ... 105s Selecting previously unselected package python3-iniconfig. 105s Preparing to unpack .../64-python3-iniconfig_2.1.0-2_all.deb ... 105s Unpacking python3-iniconfig (2.1.0-2) ... 105s Selecting previously unselected package python3-pytz. 105s Preparing to unpack .../65-python3-pytz_2025.2-5_all.deb ... 105s Unpacking python3-pytz (2025.2-5) ... 105s Selecting previously unselected package python3-pandas-lib:amd64. 105s Preparing to unpack .../66-python3-pandas-lib_2.3.3+dfsg-3_amd64.deb ... 105s Unpacking python3-pandas-lib:amd64 (2.3.3+dfsg-3) ... 105s Selecting previously unselected package python3-pandas. 105s Preparing to unpack .../67-python3-pandas_2.3.3+dfsg-3_all.deb ... 105s Unpacking python3-pandas (2.3.3+dfsg-3) ... 105s Selecting previously unselected package python3-pluggy. 105s Preparing to unpack .../68-python3-pluggy_1.6.0-2_all.deb ... 105s Unpacking python3-pluggy (1.6.0-2) ... 105s Selecting previously unselected package python3-pytest. 105s Preparing to unpack .../69-python3-pytest_9.0.2-2_all.deb ... 105s Unpacking python3-pytest (9.0.2-2) ... 105s Selecting previously unselected package python3-pytest-mock. 105s Preparing to unpack .../70-python3-pytest-mock_3.15.1-1_all.deb ... 105s Unpacking python3-pytest-mock (3.15.1-1) ... 105s Selecting previously unselected package python3-requests-mock. 105s Preparing to unpack .../71-python3-requests-mock_1.12.1-4_all.deb ... 105s Unpacking python3-requests-mock (1.12.1-4) ... 105s Selecting previously unselected package zip. 106s Preparing to unpack .../72-zip_3.0-15ubuntu2_amd64.deb ... 106s Unpacking zip (3.0-15ubuntu2) ... 106s Selecting previously unselected package unzip. 106s Preparing to unpack .../73-unzip_6.0-29ubuntu1_amd64.deb ... 106s Unpacking unzip (6.0-29ubuntu1) ... 106s Selecting previously unselected package xdg-utils. 106s Preparing to unpack .../74-xdg-utils_1.2.1-2ubuntu2_all.deb ... 106s Unpacking xdg-utils (1.2.1-2ubuntu2) ... 106s Selecting previously unselected package r-base-core. 106s Preparing to unpack .../75-r-base-core_4.5.2-1ubuntu2_amd64.deb ... 106s Unpacking r-base-core (4.5.2-1ubuntu2) ... 106s Selecting previously unselected package stress. 106s Preparing to unpack .../76-stress_1.0.7-2_amd64.deb ... 106s Unpacking stress (1.0.7-2) ... 106s Setting up libxdot4:amd64 (14.1.1-2ubuntu2) ... 106s Setting up libgraphite2-3:amd64 (1.3.14-11ubuntu1) ... 106s Setting up python3-iniconfig (2.1.0-2) ... 106s Setting up libcdt6:amd64 (14.1.1-2ubuntu2) ... 106s Setting up libpixman-1-0:amd64 (0.46.4-1) ... 106s Setting up libsharpyuv0:amd64 (1.5.0-0.1build1) ... 106s Setting up libaom3:amd64 (3.13.1-2) ... 106s Setting up python3-ftputil (5.1.0-1build1) ... 106s Setting up liblerc4:amd64 (4.0.0+ds-5ubuntu2) ... 106s Setting up libxpm4:amd64 (1:3.5.17-1build3) ... 106s Setting up libxrender1:amd64 (1:0.9.12-1) ... 106s Setting up libxcb-render0:amd64 (1.17.0-2build1) ... 106s Setting up stress (1.0.7-2) ... 106s Setting up unzip (6.0-29ubuntu1) ... 106s Setting up x11-common (1:7.7+24ubuntu1) ... 106s Setting up libdeflate0:amd64 (1.23-2) ... 106s Setting up python3-pytz (2025.2-5) ... 106s Setting up libxcb-shm0:amd64 (1.17.0-2build1) ... 106s Setting up libgomp1:amd64 (15.2.0-11ubuntu1) ... 106s Setting up libjbig0:amd64 (2.1-6.1ubuntu3) ... 106s Setting up zip (3.0-15ubuntu2) ... 106s Setting up libpathplan4:amd64 (14.1.1-2ubuntu2) ... 106s Setting up 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Setting up xdg-utils (1.2.1-2ubuntu2) ... 108s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 108s Setting up libjpeg8:amd64 (8c-2ubuntu11) ... 108s Setting up libice6:amd64 (2:1.1.1-1build1) ... 108s Setting up tcl8.6 (8.6.17+dfsg-1) ... 108s Setting up libamd3:amd64 (1:7.12.1+dfsg-1) ... 108s Setting up libcolamd3:amd64 (1:7.12.1+dfsg-1) ... 108s Setting up fontconfig-config (2.17.1-3ubuntu1) ... 108s Setting up python3-pytest (9.0.2-2) ... 108s Setting up python3-pandas-lib:amd64 (2.3.3+dfsg-3) ... 108s Setting up libpaper-utils (2.2.5-0.3build1) ... 108s Setting up libthai0:amd64 (0.1.30-1) ... 108s Setting up python3-pandas (2.3.3+dfsg-3) ... 111s Setting up libglpk40:amd64 (5.0-2) ... 111s Setting up glpk-utils (5.0-2) ... 111s Setting up libgvc7:amd64 (14.1.1-2ubuntu2) ... 111s Setting up python3-pytest-mock (3.15.1-1) ... 111s Setting up libtiff6:amd64 (4.7.0-3ubuntu3) ... 111s Setting up environment-modules (5.6.1-1) ... 111s Setting up libsm6:amd64 (2:1.2.6-1) ... 111s Setting up libxt6t64:amd64 (1:1.2.1-1.3) ... 111s Setting up libheif-plugin-libde265:amd64 (1.21.2-1) ... 111s Setting up libheif1:amd64 (1.21.2-1) ... 111s Setting up libheif-plugin-aomdec:amd64 (1.21.2-1) ... 111s Processing triggers for libc-bin (2.42-2ubuntu4) ... 111s Processing triggers for man-db (2.13.1-1) ... 111s Processing triggers for sgml-base (1.31+nmu1) ... 111s Setting up libfontconfig1:amd64 (2.17.1-3ubuntu1) ... 111s Processing triggers for install-info (7.2-5) ... 111s Setting up fontconfig (2.17.1-3ubuntu1) ... 113s Regenerating fonts cache... done. 113s Setting up libxft2:amd64 (2.3.6-1build2) ... 113s Setting up libtk8.6:amd64 (8.6.17-1) ... 113s Setting up libpango-1.0-0:amd64 (1.56.4-1) ... 113s Setting up libcairo2:amd64 (1.18.4-3) ... 113s Setting up libgd3:amd64 (2.3.3-13ubuntu1) ... 113s Setting up libpangoft2-1.0-0:amd64 (1.56.4-1) ... 113s Setting up libpangocairo-1.0-0:amd64 (1.56.4-1) ... 113s Setting up libgvplugin-pango8:amd64 (14.1.1-2ubuntu2) ... 113s Setting up libgvplugin-gd8:amd64 (14.1.1-2ubuntu2) ... 113s Setting up r-base-core (4.5.2-1ubuntu2) ... 114s Creating config file /etc/R/Renviron with new version 114s Setting up graphviz (14.1.1-2ubuntu2) ... 114s Processing triggers for libc-bin (2.42-2ubuntu4) ... 114s autopkgtest [16:52:40]: test run-unit-test: [----------------------- 115s ============================= test session starts ============================== 115s platform linux -- Python 3.14.2, pytest-9.0.2, pluggy-1.6.0 -- /usr/bin/python3 115s cachedir: .pytest_cache 115s rootdir: /tmp/autopkgtest.SIIsqA/autopkgtest_tmp 115s plugins: typeguard-4.4.4, requests_mock-1.12.1, mock-3.15.1 117s collecting ... collected 395 items / 97 deselected / 298 selected 117s 117s tests/test_expand.py::test_simple_expand PASSED [ 0%] 117s tests/test_expand.py::test_allow_missing PASSED [ 0%] 117s tests/test_google_lifesciences.py::test_google_lifesciences SKIPPED [ 1%] 117s 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[ 2%] 117s tests/test_kubernetes.py::test_kubernetes_conda SKIPPED (Skipping GC...) [ 3%] 117s tests/test_kubernetes.py::test_kubernetes_singularity SKIPPED (Skipp...) [ 3%] 117s tests/test_kubernetes.py::test_kubernetes_conda_singularity SKIPPED [ 3%] 117s tests/test_kubernetes.py::test_issue1041 SKIPPED (Skipping GCLOUD te...) [ 4%] 117s tests/test_linting.py::test_lint[params_prefix-positive] SKIPPED (Th...) [ 4%] 117s tests/test_linting.py::test_lint[params_prefix-negative] SKIPPED (Th...) [ 4%] 117s tests/test_linting.py::test_lint[absolute_paths-positive] SKIPPED (T...) [ 5%] 117s tests/test_linting.py::test_lint[absolute_paths-negative] SKIPPED (T...) [ 5%] 117s tests/test_linting.py::test_lint[long_run-positive] SKIPPED (This te...) [ 5%] 117s tests/test_linting.py::test_lint[long_run-negative] SKIPPED (This te...) 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[ 12%] 117s tests/test_linting.py::test_lint[mixed_func_and_rules-positive] SKIPPED [ 13%] 117s tests/test_linting.py::test_lint[mixed_func_and_rules-negative] SKIPPED [ 13%] 117s tests/test_persistence.py::TestCleanupContainers::test_one_unrequired_container_gets_removed PASSED [ 13%] 117s tests/test_schema.py::test_config PASSED [ 14%] 117s tests/test_schema.py::test_config_ref FAILED [ 14%] 117s tests/test_schema.py::test_dataframe PASSED [ 14%] 117s tests/test_slurm.py::test_slurm_mpi SKIPPED (Slurm is not setup when...) [ 15%] 117s tests/test_slurm.py::test_slurm_group_job SKIPPED (Slurm is not setu...) [ 15%] 117s tests/test_slurm.py::test_slurm_group_parallel SKIPPED (Slurm is not...) [ 15%] 117s tests/test_slurm.py::test_slurm_complex SKIPPED (Slurm is not setup ...) [ 16%] 117s tests/test_slurm.py::test_slurm_extra_arguments SKIPPED (Slurm and C...) 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tests/tests.py::test_new_resources_can_be_defined_as_local PASSED [ 55%] 756s tests/tests.py::test_resources_can_be_overwritten_as_global PASSED [ 55%] 776s tests/tests.py::test_scopes_submitted_to_cluster PASSED [ 56%] 797s tests/tests.py::test_resources_submitted_to_cluster PASSED [ 56%] 817s tests/tests.py::test_excluded_resources_not_submitted_to_cluster PASSED [ 56%] 837s tests/tests.py::test_group_job_fail PASSED [ 57%] 837s tests/tests.py::test_validate PASSED [ 57%] 837s tests/tests.py::test_validate_fail PASSED [ 57%] 837s tests/tests.py::test_issue854 PASSED [ 58%] 867s tests/tests.py::test_issue850 PASSED [ 58%] 897s tests/tests.py::test_issue860 PASSED [ 58%] 897s tests/tests.py::test_issue894 PASSED [ 59%] 897s tests/tests.py::test_issue584 PASSED [ 59%] 897s tests/tests.py::test_issue912 PASSED [ 59%] 927s tests/tests.py::test_job_properties PASSED [ 60%] 927s tests/tests.py::test_issue916 PASSED [ 60%] 967s tests/tests.py::test_issue930 PASSED [ 60%] 967s tests/tests.py::test_issue1037 PASSED [ 61%] 967s tests/tests.py::test_issue1046 PASSED [ 61%] 967s tests/tests.py::test_checkpoints PASSED [ 61%] 967s tests/tests.py::test_checkpoints_dir PASSED [ 62%] 968s tests/tests.py::test_issue1092 PASSED [ 62%] 968s tests/tests.py::test_issue958 PASSED [ 62%] 968s tests/tests.py::test_issue471 PASSED [ 63%] 968s tests/tests.py::test_issue1085 PASSED [ 63%] 968s tests/tests.py::test_expand_flag PASSED [ 63%] 968s tests/tests.py::test_tmpdir PASSED [ 64%] 968s tests/tests.py::test_tmpdir_default PASSED [ 64%] 968s tests/tests.py::test_issue1284 PASSED [ 64%] 968s tests/tests.py::test_issue1281 PASSED [ 65%] 969s tests/tests.py::test_filegraph PASSED [ 65%] 969s tests/tests.py::test_batch PASSED [ 65%] 969s tests/tests.py::test_batch_final PASSED [ 66%] 969s tests/tests.py::test_batch_fail PASSED [ 66%] 969s tests/tests.py::test_github_issue52 PASSED [ 66%] 969s tests/tests.py::test_envvars PASSED [ 67%] 969s tests/tests.py::test_github_issue105 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1175s tests/tests.py::test_cleanup_metadata_fail PASSED [ 92%] 1175s tests/tests.py::test_github_issue1389 PASSED [ 93%] 1175s tests/tests.py::test_github_issue2142 PASSED [ 93%] 1175s tests/tests.py::test_ensure_nonempty_fail PASSED [ 93%] 1175s tests/tests.py::test_ensure_success PASSED [ 94%] 1175s tests/tests.py::test_ensure_checksum_fail PASSED [ 94%] 1176s tests/tests.py::test_fstring PASSED [ 94%] 1187s tests/tests.py::test_github_issue1261 PASSED [ 95%] 1188s tests/tests.py::test_retries PASSED [ 95%] 1189s tests/tests.py::test_retries_not_overriden PASSED [ 95%] 1189s tests/tests.py::test_module_input_func PASSED [ 96%] 1189s tests/tests.py::test_github_issue1618 PASSED [ 96%] 1189s tests/tests.py::test_github_issue1818 PASSED [ 96%] 1189s tests/tests.py::test_match_by_wildcard_names PASSED [ 97%] 1189s tests/tests.py::test_github_issue929 PASSED [ 97%] 1191s tests/tests.py::test_github_issue1882 PASSED [ 97%] 1191s tests/tests.py::test_inferred_resources PASSED [ 98%] 1192s tests/tests.py::test_workflow_profile PASSED [ 98%] 1192s tests/tests.py::test_no_workflow_profile PASSED [ 98%] 1192s tests/tests.py::test_localrule PASSED [ 99%] 1192s tests/tests.py::test_module_wildcard_constraints PASSED [ 99%] 1193s tests/tests.py::test_config_yte PASSED [100%] 1193s 1193s =================================== FAILURES =================================== 1193s _______________________________ test_config_ref ________________________________ 1193s 1193s self = 1193s url = 'file:/tmp/pytest-of-ubuntu/pytest-0/test_config_ref0/schema/bar.schema.yaml' 1193s 1193s def resolve_from_url(self, url): 1193s """ 1193s Resolve the given URL. 1193s """ 1193s url, fragment = urldefrag(url) 1193s if not url: 1193s url = self.base_uri 1193s 1193s try: 1193s > document = self.store[url] 1193s ^^^^^^^^^^^^^^^ 1193s 1193s /usr/lib/python3/dist-packages/jsonschema/validators.py:1096: 1193s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 1193s 1193s self = {'https://json-schema.org/draft/2019-09/meta/meta-data': {'$schema': 'https://json-schema.org/draft/2019-09/schema', '...t': 'json', '$ref': '/tmp/pytest-of-ubuntu/pytest-0/test_config_ref0/schema/bar.schema.json#/definitions/jsonbar'}}}}}} 1193s uri = 'file:/tmp/pytest-of-ubuntu/pytest-0/test_config_ref0/schema/bar.schema.yaml' 1193s 1193s def __getitem__(self, uri): 1193s > return self.store[self.normalize(uri)] 1193s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 1193s E KeyError: 'file:///tmp/pytest-of-ubuntu/pytest-0/test_config_ref0/schema/bar.schema.yaml' 1193s 1193s /usr/lib/python3/dist-packages/jsonschema/_utils.py:20: KeyError 1193s 1193s During handling of the above exception, another exception occurred: 1193s 1193s self = 1193s url = 'file:/tmp/pytest-of-ubuntu/pytest-0/test_config_ref0/schema/bar.schema.yaml' 1193s 1193s def resolve_from_url(self, url): 1193s """ 1193s Resolve the given URL. 1193s """ 1193s url, fragment = urldefrag(url) 1193s if not url: 1193s url = self.base_uri 1193s 1193s try: 1193s document = self.store[url] 1193s except KeyError: 1193s try: 1193s > document = self.resolve_remote(url) 1193s ^^^^^^^^^^^^^^^^^^^^^^^^ 1193s 1193s /usr/lib/python3/dist-packages/jsonschema/validators.py:1099: 1193s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 1193s /usr/lib/python3/dist-packages/jsonschema/validators.py:1196: in resolve_remote 1193s result = self.handlers[scheme](uri) 1193s ^^^^^^^^^^^^^^^^^^^^^^^^^^ 1193s /usr/lib/python3/dist-packages/snakemake/utils.py:74: in 1193s "file": lambda uri: _load_configfile(re.sub("^file://", "", uri)) 1193s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 1193s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 1193s 1193s configpath_or_obj = 'file:/tmp/pytest-of-ubuntu/pytest-0/test_config_ref0/schema/bar.schema.yaml' 1193s filetype = 'Config' 1193s 1193s def _load_configfile(configpath_or_obj, filetype="Config"): 1193s "Tries to load a configfile first as JSON, then as YAML, into a dict." 1193s import yaml 1193s 1193s if isinstance(configpath_or_obj, str) or isinstance(configpath_or_obj, Path): 1193s > obj = open(configpath_or_obj, encoding="utf-8") 1193s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 1193s E FileNotFoundError: [Errno 2] No such file or directory: 'file:/tmp/pytest-of-ubuntu/pytest-0/test_config_ref0/schema/bar.schema.yaml' 1193s 1193s /usr/lib/python3/dist-packages/snakemake/io.py:1694: FileNotFoundError 1193s 1193s During handling of the above exception, another exception occurred: 1193s 1193s config_schema_ref = local('/tmp/pytest-of-ubuntu/pytest-0/test_config_ref0/schema/config.ref.schema.yaml') 1193s 1193s def test_config_ref(config_schema_ref): 1193s config = {} 1193s > validate(config, str(config_schema_ref)) 1193s 1193s tests/test_schema.py:127: 1193s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 1193s /usr/lib/python3/dist-packages/snakemake/utils.py:141: in validate 1193s DefaultValidator(schema, resolver=resolver).validate(data) 1193s /usr/lib/python3/dist-packages/jsonschema/validators.py:434: in validate 1193s for error in self.iter_errors(*args, **kwargs): 1193s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 1193s /usr/lib/python3/dist-packages/jsonschema/validators.py:368: in iter_errors 1193s for error in errors: 1193s ^^^^^^ 1193s /usr/lib/python3/dist-packages/snakemake/utils.py:89: in set_defaults 1193s for error in validate_properties(validator, properties, instance, schema): 1193s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 1193s /usr/lib/python3/dist-packages/jsonschema/_keywords.py:295: in properties 1193s yield from validator.descend( 1193s /usr/lib/python3/dist-packages/jsonschema/validators.py:416: in descend 1193s for error in errors: 1193s ^^^^^^ 1193s /usr/lib/python3/dist-packages/snakemake/utils.py:89: in set_defaults 1193s for error in validate_properties(validator, properties, instance, schema): 1193s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 1193s /usr/lib/python3/dist-packages/jsonschema/_keywords.py:295: in properties 1193s yield from validator.descend( 1193s /usr/lib/python3/dist-packages/jsonschema/validators.py:416: in descend 1193s for error in errors: 1193s ^^^^^^ 1193s /usr/lib/python3/dist-packages/jsonschema/_keywords.py:274: in ref 1193s yield from validator._validate_reference(ref=ref, instance=instance) 1193s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 1193s /usr/lib/python3/dist-packages/jsonschema/validators.py:461: in _validate_reference 1193s scope, resolved = resolve(ref) 1193s ^^^^^^^^^^^^ 1193s /usr/lib/python3/dist-packages/jsonschema/validators.py:1085: in resolve 1193s return url, self._remote_cache(url) 1193s ^^^^^^^^^^^^^^^^^^^^^^^ 1193s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 1193s 1193s self = 1193s url = 'file:/tmp/pytest-of-ubuntu/pytest-0/test_config_ref0/schema/bar.schema.yaml' 1193s 1193s def resolve_from_url(self, url): 1193s """ 1193s Resolve the given URL. 1193s """ 1193s url, fragment = urldefrag(url) 1193s if not url: 1193s url = self.base_uri 1193s 1193s try: 1193s document = self.store[url] 1193s except KeyError: 1193s try: 1193s document = self.resolve_remote(url) 1193s except Exception as exc: 1193s > raise exceptions._RefResolutionError(exc) 1193s E jsonschema.exceptions._RefResolutionError: [Errno 2] No such file or directory: 'file:/tmp/pytest-of-ubuntu/pytest-0/test_config_ref0/schema/bar.schema.yaml' 1193s 1193s /usr/lib/python3/dist-packages/jsonschema/validators.py:1101: _RefResolutionError 1193s ------------------------------ Captured log call ------------------------------- 1193s CRITICAL snakemake.logging:logging.py:582 No validator found for JSON Schema version identifier 'https://json-schema.org/draft/2020-12/schema#' 1193s CRITICAL snakemake.logging:logging.py:582 Defaulting to validator for JSON Schema version 'https://json-schema.org/draft/2020-12/schema' 1193s CRITICAL snakemake.logging:logging.py:582 Note that schema file may not be validated correctly. 1193s =============================== warnings summary =============================== 1193s tests/test_schema.py: 10 warnings 1193s tests/tests.py: 6 warnings 1193s /usr/lib/python3/dist-packages/snakemake/utils.py:50: DeprecationWarning: jsonschema.RefResolver is deprecated as of v4.18.0, in favor of the https://github.com/python-jsonschema/referencing library, which provides more compliant referencing behavior as well as more flexible APIs for customization. A future release will remove RefResolver. Please file a feature request (on referencing) if you are missing an API for the kind of customization you need. 1193s from jsonschema import validators, RefResolver 1193s 1193s tests/testapi.py::test_keep_logger 1193s /usr/lib/python3/dist-packages/stopit/__init__.py:10: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html 1193s import pkg_resources 1193s 1193s tests/testapi.py::test_lockexception 1193s /usr/lib/python3/dist-packages/_pytest/python.py:170: PytestReturnNotNoneWarning: Test functions should return None, but tests/testapi.py::test_lockexception returned . 1193s Did you mean to use `assert` instead of `return`? 1193s See https://docs.pytest.org/en/stable/how-to/assert.html#return-not-none for more information. 1193s warnings.warn( 1193s 1193s tests/tests.py::test_glpk_solver 1193s :898: DeprecationWarning: This process (pid=4379) is multi-threaded, use of fork() may lead to deadlocks in the child. 1193s 1193s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 1193s =========================== short test summary info ============================ 1193s FAILED tests/test_schema.py::test_config_ref - jsonschema.exceptions._RefReso... 1193s = 1 failed, 251 passed, 46 skipped, 97 deselected, 19 warnings in 1077.38s (0:17:57) = 1193s autopkgtest [17:10:39]: test run-unit-test: -----------------------] 1194s run-unit-test FAIL non-zero exit status 1 1194s autopkgtest [17:10:40]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 1194s autopkgtest [17:10:40]: @@@@@@@@@@@@@@@@@@@@ summary 1194s command1 PASS 1194s run-unit-test FAIL non-zero exit status 1